BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBJ7h03.xg.2.1
(487 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK069907.1| Oryza sativa (japonica cultivar-group) cDNA... 145 3e-032
ref|XM_473290.1| Oryza sativa (japonica cultivar-group), p... 145 3e-032
gb|AACV01010174.1| Oryza sativa (japonica cultivar-group) c... 100 1e-018
ref|NT_079865.2| Oryza sativa (japonica cultivar-group) 100 1e-018
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 100 1e-018
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 100 1e-018
emb|AL663006.3|OSJN00204 Oryza sativa genomic DNA, chromoso... 100 1e-018
emb|AL662984.3|OSJN00183 Oryza sativa genomic DNA, chromoso... 100 1e-018
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 100 1e-018
ref|XM_466988.1| Oryza sativa (japonica cultivar-group), mRNA 94 8e-017
dbj|AP004788.1| Oryza sativa (japonica cultivar-group) chro... 78 5e-012
dbj|AP004133.3| Oryza sativa (japonica cultivar-group) geno... 78 5e-012
dbj|AP004768.3| Oryza sativa (japonica cultivar-group) geno... 78 5e-012
gb|AACV01005009.1| Oryza sativa (japonica cultivar-group) c... 78 5e-012
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 78 5e-012
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 78 5e-012
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 78 5e-012
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 78 5e-012
gb|AU030413.1|AU030413 AU030413 Rice cDNA from immature lea... 60 1e-006
gb|AU065317.1|AU065317 AU065317 Rice cDNA from immature lea... 60 1e-006
gb|CF323532.1|CF323532 HDN--04-B15.g1 OsHDAC1-overexpressin... 60 1e-006
gb|CD670811.1|CD670811 OsMR230 5MT resistant rice mutant cD... 60 1e-006
gb|CV723028.1|CV723028 root--02-E17.g1 Rice root lambda pha... 60 1e-006
dbj|AK058507.1| Oryza sativa (japonica cultivar-group) cDNA... 60 1e-006
gb|AC135205.4| Oryza sativa (japonica cultivar-group) chrom... 60 1e-006
gb|AC135208.3| Oryza sativa (japonica cultivar-group) chrom... 60 1e-006
gb|AACV01006284.1| Oryza sativa (japonica cultivar-group) c... 60 1e-006
ref|NM_187463.1| Oryza sativa (japonica cultivar-group), p... 60 1e-006
ref|NT_107192.1| Oryza sativa (japonica cultivar-group) 60 1e-006
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 60 1e-006
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 60 1e-006
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 60 1e-006
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 60 1e-006
gb|C71856.1|C71856 C71856 Rice panicle at flowering stage O... 46 0.017
gb|AU063889.1|AU063889 AU063889 Rice panicle at flowering s... 46 0.017
gb|BP185090.1|BP185090 BP185090 pNS rice panicle cDNA, flow... 46 0.017
dbj|AK072520.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.017
gb|AC078840.6| Oryza sativa chromosome 10 BAC OSJNBb0073N24... 46 0.017
gb|AACV01021892.1| Oryza sativa (japonica cultivar-group) c... 46 0.017
ref|NM_197225.1| Oryza sativa (japonica cultivar-group) put... 46 0.017
ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chr... 46 0.017
gb|CH401254.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.017
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.017
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 46 0.017
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 46 0.017
>dbj|AK069907.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023034M24, full
insert sequence
Length = 955
Score = 145 bits (73), Expect = 3e-032
Identities = 217/274 (79%), Gaps = 3/274 (1%)
Strand = Plus / Plus
Query: 180 gccactgcaaagggatcctctcgatnnncagctactcttccatggannnnnnnctgtact 239
|||||||||||||||| |||||||| ||||||||| |||||||| || ||||
Sbjct: 177 gccactgcaaagggattctctcgatgtgcagctactcgtccatggacggcgtcctctact 236
Query: 240 gcaagacccacttcgagcagctcttcaaggagaccgggagcttctccaagaacttcacgc 299
||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||| |||
Sbjct: 237 gcaagacccactttgagcagctcttcaaggagacggggagcttctccaagaagttcgcgc 296
Query: 300 cannnnnnaagtcttcagacaaggnnnaactgacaagggcccccagcaagctatcatctn 359
|| | ||| ||||||||| ||||| |||||||||| |||||| ||| ||
Sbjct: 297 caggttgcagatctacagacaagg---aactggcaagggccccaagcaagatatgttcag 353
Query: 360 cnttttctggtactcannataannnnncagcttgccagaaaacagtgtacccgctggagn 419
| |||||||| ||||| |||| |||| |||||||||||||||||||| || ||
Sbjct: 354 cgttttctggaactcaggataagtgtgcagcctgccagaaaacagtgtacccactagaaa 413
Query: 420 agttgactctggaagnnnagtcctaccacaagag 453
|| | ||| |||||| |||| |||||||||||
Sbjct: 414 agctaactttggaaggtgagtcataccacaagag 447
Score = 46.1 bits (23), Expect = 0.017
Identities = 37/43 (86%)
Strand = Plus / Plus
Query: 71 tctttcaccggcacncaggannngtgcgcggagtgcgacaaga 113
|||||||||||||| ||||| |||| ||| |||||||||||
Sbjct: 68 tctttcaccggcacgcaggacaagtgcacggcgtgcgacaaga 110
>ref|XM_473290.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 606
Score = 145 bits (73), Expect = 3e-032
Identities = 217/274 (79%), Gaps = 3/274 (1%)
Strand = Plus / Plus
Query: 180 gccactgcaaagggatcctctcgatnnncagctactcttccatggannnnnnnctgtact 239
|||||||||||||||| |||||||| ||||||||| |||||||| || ||||
Sbjct: 113 gccactgcaaagggattctctcgatgtgcagctactcgtccatggacggcgtcctctact 172
Query: 240 gcaagacccacttcgagcagctcttcaaggagaccgggagcttctccaagaacttcacgc 299
||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||| |||
Sbjct: 173 gcaagacccactttgagcagctcttcaaggagacggggagcttctccaagaagttcgcgc 232
Query: 300 cannnnnnaagtcttcagacaaggnnnaactgacaagggcccccagcaagctatcatctn 359
|| | ||| ||||||||| ||||| |||||||||| |||||| ||| ||
Sbjct: 233 caggttgcagatctacagacaagg---aactggcaagggccccaagcaagatatgttcag 289
Query: 360 cnttttctggtactcannataannnnncagcttgccagaaaacagtgtacccgctggagn 419
| |||||||| ||||| |||| |||| |||||||||||||||||||| || ||
Sbjct: 290 cgttttctggaactcaggataagtgtgcagcctgccagaaaacagtgtacccactagaaa 349
Query: 420 agttgactctggaagnnnagtcctaccacaagag 453
|| | ||| |||||| |||| |||||||||||
Sbjct: 350 agctaactttggaaggtgagtcataccacaagag 383
Score = 46.1 bits (23), Expect = 0.017
Identities = 37/43 (86%)
Strand = Plus / Plus
Query: 71 tctttcaccggcacncaggannngtgcgcggagtgcgacaaga 113
|||||||||||||| ||||| |||| ||| |||||||||||
Sbjct: 4 tctttcaccggcacgcaggacaagtgcacggcgtgcgacaaga 46
>gb|AACV01010174.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010174, whole
genome shotgun sequence
Length = 20753
Score = 99.6 bits (50), Expect = 1e-018
Identities = 62/66 (93%)
Strand = Plus / Plus
Query: 236 tactgcaagacccacttcgagcagctcttcaaggagaccgggagcttctccaagaacttc 295
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 8478 tactgcaagacccactttgagcagctcttcaaggagacggggagcttctccaagaagttc 8537
Query: 296 acgcca 301
|||||
Sbjct: 8538 gcgcca 8543
Score = 48.1 bits (24), Expect = 0.004
Identities = 63/79 (79%)
Strand = Plus / Plus
Query: 333 caagggcccccagcaagctatcatctncnttttctggtactcannataannnnncagctt 392
|||||||||| |||||| ||| || | |||||||| ||||| |||| |||| |
Sbjct: 8752 caagggccccaagcaagatatgttcagcgttttctggaactcaggataagtgtgcagcct 8811
Query: 393 gccagaaaacagtgtaccc 411
|||||||||||||||||||
Sbjct: 8812 gccagaaaacagtgtaccc 8830
Score = 46.1 bits (23), Expect = 0.017
Identities = 37/43 (86%)
Strand = Plus / Plus
Query: 71 tctttcaccggcacncaggannngtgcgcggagtgcgacaaga 113
|||||||||||||| ||||| |||| ||| |||||||||||
Sbjct: 8196 tctttcaccggcacgcaggacaagtgcacggcgtgcgacaaga 8238
>ref|NT_079865.2| Oryza sativa (japonica cultivar-group)
Length = 3674553
Score = 99.6 bits (50), Expect = 1e-018
Identities = 62/66 (93%)
Strand = Plus / Minus
Query: 236 tactgcaagacccacttcgagcagctcttcaaggagaccgggagcttctccaagaacttc 295
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 372253 tactgcaagacccactttgagcagctcttcaaggagacggggagcttctccaagaagttc 372194
Query: 296 acgcca 301
|||||
Sbjct: 372193 gcgcca 372188
Score = 48.1 bits (24), Expect = 0.004
Identities = 63/79 (79%)
Strand = Plus / Minus
Query: 333 caagggcccccagcaagctatcatctncnttttctggtactcannataannnnncagctt 392
|||||||||| |||||| ||| || | |||||||| ||||| |||| |||| |
Sbjct: 371979 caagggccccaagcaagatatgttcagcgttttctggaactcaggataagtgtgcagcct 371920
Query: 393 gccagaaaacagtgtaccc 411
|||||||||||||||||||
Sbjct: 371919 gccagaaaacagtgtaccc 371901
Score = 46.1 bits (23), Expect = 0.017
Identities = 37/43 (86%)
Strand = Plus / Minus
Query: 71 tctttcaccggcacncaggannngtgcgcggagtgcgacaaga 113
|||||||||||||| ||||| |||| ||| |||||||||||
Sbjct: 372535 tctttcaccggcacgcaggacaagtgcacggcgtgcgacaaga 372493
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 99.6 bits (50), Expect = 1e-018
Identities = 62/66 (93%)
Strand = Plus / Minus
Query: 236 tactgcaagacccacttcgagcagctcttcaaggagaccgggagcttctccaagaacttc 295
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 4427453 tactgcaagacccactttgagcagctcttcaaggagacggggagcttctccaagaagttc 4427394
Query: 296 acgcca 301
|||||
Sbjct: 4427393 gcgcca 4427388
Score = 48.1 bits (24), Expect = 0.004
Identities = 63/79 (79%)
Strand = Plus / Minus
Query: 333 caagggcccccagcaagctatcatctncnttttctggtactcannataannnnncagctt 392
|||||||||| |||||| ||| || | |||||||| ||||| |||| |||| |
Sbjct: 4427179 caagggccccaagcaagatatgttcagcgttttctggaactcaggataagtgtgcagcct 4427120
Query: 393 gccagaaaacagtgtaccc 411
|||||||||||||||||||
Sbjct: 4427119 gccagaaaacagtgtaccc 4427101
Score = 46.1 bits (23), Expect = 0.017
Identities = 37/43 (86%)
Strand = Plus / Minus
Query: 71 tctttcaccggcacncaggannngtgcgcggagtgcgacaaga 113
|||||||||||||| ||||| |||| ||| |||||||||||
Sbjct: 4427735 tctttcaccggcacgcaggacaagtgcacggcgtgcgacaaga 4427693
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 99.6 bits (50), Expect = 1e-018
Identities = 62/66 (93%)
Strand = Plus / Minus
Query: 236 tactgcaagacccacttcgagcagctcttcaaggagaccgggagcttctccaagaacttc 295
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 23571552 tactgcaagacccactttgagcagctcttcaaggagacggggagcttctccaagaagttc 23571493
Query: 296 acgcca 301
|||||
Sbjct: 23571492 gcgcca 23571487
Score = 48.1 bits (24), Expect = 0.004
Identities = 63/79 (79%)
Strand = Plus / Minus
Query: 333 caagggcccccagcaagctatcatctncnttttctggtactcannataannnnncagctt 392
|||||||||| |||||| ||| || | |||||||| ||||| |||| |||| |
Sbjct: 23571278 caagggccccaagcaagatatgttcagcgttttctggaactcaggataagtgtgcagcct 23571219
Query: 393 gccagaaaacagtgtaccc 411
|||||||||||||||||||
Sbjct: 23571218 gccagaaaacagtgtaccc 23571200
Score = 46.1 bits (23), Expect = 0.017
Identities = 37/43 (86%)
Strand = Plus / Minus
Query: 71 tctttcaccggcacncaggannngtgcgcggagtgcgacaaga 113
|||||||||||||| ||||| |||| ||| |||||||||||
Sbjct: 23571834 tctttcaccggcacgcaggacaagtgcacggcgtgcgacaaga 23571792
>emb|AL663006.3|OSJN00204 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0039L24,
complete sequence
Length = 121056
Score = 99.6 bits (50), Expect = 1e-018
Identities = 62/66 (93%)
Strand = Plus / Minus
Query: 236 tactgcaagacccacttcgagcagctcttcaaggagaccgggagcttctccaagaacttc 295
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 35227 tactgcaagacccactttgagcagctcttcaaggagacggggagcttctccaagaagttc 35168
Query: 296 acgcca 301
|||||
Sbjct: 35167 gcgcca 35162
Score = 48.1 bits (24), Expect = 0.004
Identities = 63/79 (79%)
Strand = Plus / Minus
Query: 333 caagggcccccagcaagctatcatctncnttttctggtactcannataannnnncagctt 392
|||||||||| |||||| ||| || | |||||||| ||||| |||| |||| |
Sbjct: 34953 caagggccccaagcaagatatgttcagcgttttctggaactcaggataagtgtgcagcct 34894
Query: 393 gccagaaaacagtgtaccc 411
|||||||||||||||||||
Sbjct: 34893 gccagaaaacagtgtaccc 34875
Score = 46.1 bits (23), Expect = 0.017
Identities = 37/43 (86%)
Strand = Plus / Minus
Query: 71 tctttcaccggcacncaggannngtgcgcggagtgcgacaaga 113
|||||||||||||| ||||| |||| ||| |||||||||||
Sbjct: 35509 tctttcaccggcacgcaggacaagtgcacggcgtgcgacaaga 35467
>emb|AL662984.3|OSJN00183 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0081C01,
complete sequence
Length = 140454
Score = 99.6 bits (50), Expect = 1e-018
Identities = 62/66 (93%)
Strand = Plus / Minus
Query: 236 tactgcaagacccacttcgagcagctcttcaaggagaccgggagcttctccaagaacttc 295
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 132555 tactgcaagacccactttgagcagctcttcaaggagacggggagcttctccaagaagttc 132496
Query: 296 acgcca 301
|||||
Sbjct: 132495 gcgcca 132490
Score = 48.1 bits (24), Expect = 0.004
Identities = 63/79 (79%)
Strand = Plus / Minus
Query: 333 caagggcccccagcaagctatcatctncnttttctggtactcannataannnnncagctt 392
|||||||||| |||||| ||| || | |||||||| ||||| |||| |||| |
Sbjct: 132281 caagggccccaagcaagatatgttcagcgttttctggaactcaggataagtgtgcagcct 132222
Query: 393 gccagaaaacagtgtaccc 411
|||||||||||||||||||
Sbjct: 132221 gccagaaaacagtgtaccc 132203
Score = 46.1 bits (23), Expect = 0.017
Identities = 37/43 (86%)
Strand = Plus / Minus
Query: 71 tctttcaccggcacncaggannngtgcgcggagtgcgacaaga 113
|||||||||||||| ||||| |||| ||| |||||||||||
Sbjct: 132837 tctttcaccggcacgcaggacaagtgcacggcgtgcgacaaga 132795
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 99.6 bits (50), Expect = 1e-018
Identities = 62/66 (93%)
Strand = Plus / Minus
Query: 236 tactgcaagacccacttcgagcagctcttcaaggagaccgggagcttctccaagaacttc 295
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 26595669 tactgcaagacccactttgagcagctcttcaaggagacggggagcttctccaagaagttc 26595610
Query: 296 acgcca 301
|||||
Sbjct: 26595609 gcgcca 26595604
Score = 48.1 bits (24), Expect = 0.004
Identities = 63/79 (79%)
Strand = Plus / Minus
Query: 333 caagggcccccagcaagctatcatctncnttttctggtactcannataannnnncagctt 392
|||||||||| |||||| ||| || | |||||||| ||||| |||| |||| |
Sbjct: 26595395 caagggccccaagcaagatatgttcagcgttttctggaactcaggataagtgtgcagcct 26595336
Query: 393 gccagaaaacagtgtaccc 411
|||||||||||||||||||
Sbjct: 26595335 gccagaaaacagtgtaccc 26595317
Score = 46.1 bits (23), Expect = 0.017
Identities = 37/43 (86%)
Strand = Plus / Minus
Query: 71 tctttcaccggcacncaggannngtgcgcggagtgcgacaaga 113
|||||||||||||| ||||| |||| ||| |||||||||||
Sbjct: 26595951 tctttcaccggcacgcaggacaagtgcacggcgtgcgacaaga 26595909
>ref|XM_466988.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 621
Score = 93.7 bits (47), Expect = 8e-017
Identities = 112/139 (80%)
Strand = Plus / Plus
Query: 153 cctaccataagacatgcttcnannnnngccactgcaaagggatcctctcgatnnncagct 212
||||||| |||||||||||| | |||||||||| |||| ||||||||| | ||
Sbjct: 86 cctaccacaagacatgcttcaagtgcagccactgcaaggggaccctctcgatgtgtaact 145
Query: 213 actcttccatggannnnnnnctgtactgcaagacccacttcgagcagctcttcaaggaga 272
||||||| ||||| |||||||||||||| ||||| |||||||||||||| ||||
Sbjct: 146 actcttcgatggatggtgtcctgtactgcaagacgcactttgagcagctcttcaaagaga 205
Query: 273 ccgggagcttctccaagaa 291
| ||||||||||| |||||
Sbjct: 206 cggggagcttctcaaagaa 224
>dbj|AP004788.1| Oryza sativa (japonica cultivar-group) chromosome 2 clone P0408D11, ***
SEQUENCING IN PROGRESS ***
Length = 138934
Score = 77.8 bits (39), Expect = 5e-012
Identities = 54/59 (91%)
Strand = Plus / Plus
Query: 233 ctgtactgcaagacccacttcgagcagctcttcaaggagaccgggagcttctccaagaa 291
|||||||||||||| ||||| |||||||||||||| ||||| ||||||||||| |||||
Sbjct: 78109 ctgtactgcaagacgcactttgagcagctcttcaaagagacggggagcttctcaaagaa 78167
>dbj|AP004133.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1112_G03
Length = 106401
Score = 77.8 bits (39), Expect = 5e-012
Identities = 54/59 (91%)
Strand = Plus / Minus
Query: 233 ctgtactgcaagacccacttcgagcagctcttcaaggagaccgggagcttctccaagaa 291
|||||||||||||| ||||| |||||||||||||| ||||| ||||||||||| |||||
Sbjct: 5883 ctgtactgcaagacgcactttgagcagctcttcaaagagacggggagcttctcaaagaa 5825
>dbj|AP004768.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0010C01
Length = 186185
Score = 77.8 bits (39), Expect = 5e-012
Identities = 54/59 (91%)
Strand = Plus / Minus
Query: 233 ctgtactgcaagacccacttcgagcagctcttcaaggagaccgggagcttctccaagaa 291
|||||||||||||| ||||| |||||||||||||| ||||| ||||||||||| |||||
Sbjct: 161953 ctgtactgcaagacgcactttgagcagctcttcaaagagacggggagcttctcaaagaa 161895
>gb|AACV01005009.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005009, whole
genome shotgun sequence
Length = 78753
Score = 77.8 bits (39), Expect = 5e-012
Identities = 54/59 (91%)
Strand = Plus / Plus
Query: 233 ctgtactgcaagacccacttcgagcagctcttcaaggagaccgggagcttctccaagaa 291
|||||||||||||| ||||| |||||||||||||| ||||| ||||||||||| |||||
Sbjct: 76735 ctgtactgcaagacgcactttgagcagctcttcaaagagacggggagcttctcaaagaa 76793
>ref|NT_107181.1| Oryza sativa (japonica cultivar-group)
Length = 9248309
Score = 77.8 bits (39), Expect = 5e-012
Identities = 54/59 (91%)
Strand = Plus / Minus
Query: 233 ctgtactgcaagacccacttcgagcagctcttcaaggagaccgggagcttctccaagaa 291
|||||||||||||| ||||| |||||||||||||| ||||| ||||||||||| |||||
Sbjct: 924276 ctgtactgcaagacgcactttgagcagctcttcaaagagacggggagcttctcaaagaa 924218
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 77.8 bits (39), Expect = 5e-012
Identities = 54/59 (91%)
Strand = Plus / Minus
Query: 233 ctgtactgcaagacccacttcgagcagctcttcaaggagaccgggagcttctccaagaa 291
|||||||||||||| ||||| |||||||||||||| ||||| ||||||||||| |||||
Sbjct: 12119651 ctgtactgcaagacgcactttgagcagctcttcaaagagacggggagcttctcaaagaa 12119593
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 77.8 bits (39), Expect = 5e-012
Identities = 54/59 (91%)
Strand = Plus / Minus
Query: 233 ctgtactgcaagacccacttcgagcagctcttcaaggagaccgggagcttctccaagaa 291
|||||||||||||| ||||| |||||||||||||| ||||| ||||||||||| |||||
Sbjct: 25572715 ctgtactgcaagacgcactttgagcagctcttcaaagagacggggagcttctcaaagaa 25572657
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 77.8 bits (39), Expect = 5e-012
Identities = 54/59 (91%)
Strand = Plus / Minus
Query: 233 ctgtactgcaagacccacttcgagcagctcttcaaggagaccgggagcttctccaagaa 291
|||||||||||||| ||||| |||||||||||||| ||||| ||||||||||| |||||
Sbjct: 25759277 ctgtactgcaagacgcactttgagcagctcttcaaagagacggggagcttctcaaagaa 25759219
>gb|AU030413.1|AU030413 AU030413 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E51032_1A, mRNA sequence
Length = 399
Score = 60.0 bits (30), Expect = 1e-006
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 236 tactgcaagacccacttcgagcagctcttcaaggagaccgggagct 281
||||||||| |||| |||||||| || |||||||||||||||||||
Sbjct: 274 tactgcaagccccatttcgagcaactgttcaaggagaccgggagct 319
>gb|AU065317.1|AU065317 AU065317 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E61601_1A, mRNA sequence
Length = 485
Score = 60.0 bits (30), Expect = 1e-006
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 236 tactgcaagacccacttcgagcagctcttcaaggagaccgggagct 281
||||||||| |||| |||||||| || |||||||||||||||||||
Sbjct: 352 tactgcaagccccatttcgagcaactgttcaaggagaccgggagct 397
>gb|CF323532.1|CF323532 HDN--04-B15.g1 OsHDAC1-overexpressing transgenic rice lambda phage
cDNA library II (HDN) Oryza sativa (japonica
cultivar-group) cDNA clone HDN--04-B15, mRNA sequence
Length = 512
Score = 60.0 bits (30), Expect = 1e-006
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 236 tactgcaagacccacttcgagcagctcttcaaggagaccgggagct 281
||||||||| |||| |||||||| || |||||||||||||||||||
Sbjct: 325 tactgcaagccccatttcgagcaactgttcaaggagaccgggagct 370
>gb|CD670811.1|CD670811 OsMR230 5MT resistant rice mutant cDNA library Oryza sativa
(japonica cultivar-group) cDNA, mRNA sequence
Length = 612
Score = 60.0 bits (30), Expect = 1e-006
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 236 tactgcaagacccacttcgagcagctcttcaaggagaccgggagct 281
||||||||| |||| |||||||| || |||||||||||||||||||
Sbjct: 181 tactgcaagccccatttcgagcaactgttcaaggagaccgggagct 226
>gb|CV723028.1|CV723028 root--02-E17.g1 Rice root lambda phage cDNA library (root) Oryza
sativa (japonica cultivar-group) cDNA clone
root--02-E17, mRNA sequence
Length = 482
Score = 60.0 bits (30), Expect = 1e-006
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 236 tactgcaagacccacttcgagcagctcttcaaggagaccgggagct 281
||||||||| |||| |||||||| || |||||||||||||||||||
Sbjct: 255 tactgcaagccccatttcgagcaactgttcaaggagaccgggagct 300
>dbj|AK058507.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-G03, full
insert sequence
Length = 962
Score = 60.0 bits (30), Expect = 1e-006
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 236 tactgcaagacccacttcgagcagctcttcaaggagaccgggagct 281
||||||||| |||| |||||||| || |||||||||||||||||||
Sbjct: 342 tactgcaagccccatttcgagcaactgttcaaggagaccgggagct 387
>gb|AC135205.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1012B02,
complete sequence
Length = 115270
Score = 60.0 bits (30), Expect = 1e-006
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 236 tactgcaagacccacttcgagcagctcttcaaggagaccgggagct 281
||||||||| |||| |||||||| || |||||||||||||||||||
Sbjct: 114583 tactgcaagccccatttcgagcaactgttcaaggagaccgggagct 114628
>gb|AC135208.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1364E02,
complete sequence
Length = 112265
Score = 60.0 bits (30), Expect = 1e-006
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 236 tactgcaagacccacttcgagcagctcttcaaggagaccgggagct 281
||||||||| |||| |||||||| || |||||||||||||||||||
Sbjct: 14085 tactgcaagccccatttcgagcaactgttcaaggagaccgggagct 14130
>gb|AACV01006284.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006284, whole
genome shotgun sequence
Length = 17397
Score = 60.0 bits (30), Expect = 1e-006
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 236 tactgcaagacccacttcgagcagctcttcaaggagaccgggagct 281
||||||||| |||| |||||||| || |||||||||||||||||||
Sbjct: 1205 tactgcaagccccatttcgagcaactgttcaaggagaccgggagct 1250
>ref|NM_187463.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 591
Score = 60.0 bits (30), Expect = 1e-006
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 236 tactgcaagacccacttcgagcagctcttcaaggagaccgggagct 281
||||||||| |||| |||||||| || |||||||||||||||||||
Sbjct: 166 tactgcaagccccatttcgagcaactgttcaaggagaccgggagct 211
>ref|NT_107192.1| Oryza sativa (japonica cultivar-group)
Length = 4781381
Score = 60.0 bits (30), Expect = 1e-006
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 236 tactgcaagacccacttcgagcagctcttcaaggagaccgggagct 281
||||||||| |||| |||||||| || |||||||||||||||||||
Sbjct: 114583 tactgcaagccccatttcgagcaactgttcaaggagaccgggagct 114628
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
scaffold, whole genome shotgun sequence
Length = 13858245
Score = 60.0 bits (30), Expect = 1e-006
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 236 tactgcaagacccacttcgagcagctcttcaaggagaccgggagct 281
||||||||| |||| |||||||| || |||||||||||||||||||
Sbjct: 8727001 tactgcaagccccatttcgagcaactgttcaaggagaccgggagct 8727046
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 60.0 bits (30), Expect = 1e-006
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 236 tactgcaagacccacttcgagcagctcttcaaggagaccgggagct 281
||||||||| |||| |||||||| || |||||||||||||||||||
Sbjct: 8919363 tactgcaagccccatttcgagcaactgttcaaggagaccgggagct 8919408
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 60.0 bits (30), Expect = 1e-006
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 236 tactgcaagacccacttcgagcagctcttcaaggagaccgggagct 281
||||||||| |||| |||||||| || |||||||||||||||||||
Sbjct: 8768767 tactgcaagccccatttcgagcaactgttcaaggagaccgggagct 8768812
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 60.0 bits (30), Expect = 1e-006
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 236 tactgcaagacccacttcgagcagctcttcaaggagaccgggagct 281
||||||||| |||| |||||||| || |||||||||||||||||||
Sbjct: 8770932 tactgcaagccccatttcgagcaactgttcaaggagaccgggagct 8770977
>gb|C71856.1|C71856 C71856 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E0473_1A, mRNA sequence
Length = 459
Score = 46.1 bits (23), Expect = 0.017
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 236 tactgcaagacccacttcgagcagctcttcaagga 270
|||||||||||||| || |||||||| ||||||||
Sbjct: 355 tactgcaagacccattttgagcagctattcaagga 389
>gb|AU063889.1|AU063889 AU063889 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E1632_1A, mRNA sequence
Length = 463
Score = 46.1 bits (23), Expect = 0.017
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 236 tactgcaagacccacttcgagcagctcttcaagga 270
|||||||||||||| || |||||||| ||||||||
Sbjct: 344 tactgcaagacccattttgagcagctattcaagga 378
>gb|BP185090.1|BP185090 BP185090 pNS rice panicle cDNA, flowering stage Oryza sativa
(japonica cultivar-group) cDNA clone pNS-YP32, mRNA
sequence
Length = 595
Score = 46.1 bits (23), Expect = 0.017
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 236 tactgcaagacccacttcgagcagctcttcaagga 270
|||||||||||||| || |||||||| ||||||||
Sbjct: 229 tactgcaagacccattttgagcagctattcaagga 263
>dbj|AK072520.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023131K23, full
insert sequence
Length = 1267
Score = 46.1 bits (23), Expect = 0.017
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 236 tactgcaagacccacttcgagcagctcttcaagga 270
|||||||||||||| || |||||||| ||||||||
Sbjct: 367 tactgcaagacccattttgagcagctattcaagga 401
>gb|AC078840.6| Oryza sativa chromosome 10 BAC OSJNBb0073N24 genomic sequence, complete
sequence
Length = 130058
Score = 46.1 bits (23), Expect = 0.017
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 236 tactgcaagacccacttcgagcagctcttcaagga 270
|||||||||||||| || |||||||| ||||||||
Sbjct: 44741 tactgcaagacccattttgagcagctattcaagga 44707
>gb|AACV01021892.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg021892, whole
genome shotgun sequence
Length = 87744
Score = 46.1 bits (23), Expect = 0.017
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 236 tactgcaagacccacttcgagcagctcttcaagga 270
|||||||||||||| || |||||||| ||||||||
Sbjct: 51169 tactgcaagacccattttgagcagctattcaagga 51135
>ref|NM_197225.1| Oryza sativa (japonica cultivar-group) putative LIM domain protein
(OSJNBb0073N24.9), mRNA
Length = 1040
Score = 46.1 bits (23), Expect = 0.017
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 236 tactgcaagacccacttcgagcagctcttcaagga 270
|||||||||||||| || |||||||| ||||||||
Sbjct: 346 tactgcaagacccattttgagcagctattcaagga 380
>ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chromosome 10
Length = 4609300
Score = 46.1 bits (23), Expect = 0.017
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 236 tactgcaagacccacttcgagcagctcttcaagga 270
|||||||||||||| || |||||||| ||||||||
Sbjct: 605257 tactgcaagacccattttgagcagctattcaagga 605223
>gb|CH401254.1| Oryza sativa (japonica cultivar-group) chromosome 10 scaffold000091 genomic
scaffold, whole genome shotgun sequence
Length = 10615099
Score = 46.1 bits (23), Expect = 0.017
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 236 tactgcaagacccacttcgagcagctcttcaagga 270
|||||||||||||| || |||||||| ||||||||
Sbjct: 6719521 tactgcaagacccattttgagcagctattcaagga 6719487
>gb|CM000147.1| Oryza sativa (japonica cultivar-group) chromosome 10, whole genome shotgun
sequence
Length = 21480893
Score = 46.1 bits (23), Expect = 0.017
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 236 tactgcaagacccacttcgagcagctcttcaagga 270
|||||||||||||| || |||||||| ||||||||
Sbjct: 17585315 tactgcaagacccattttgagcagctattcaagga 17585281
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
sequence
Length = 22685906
Score = 46.1 bits (23), Expect = 0.017
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 236 tactgcaagacccacttcgagcagctcttcaagga 270
|||||||||||||| || |||||||| ||||||||
Sbjct: 18683463 tactgcaagacccattttgagcagctattcaagga 18683429
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
Length = 22698374
Score = 46.1 bits (23), Expect = 0.017
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 236 tactgcaagacccacttcgagcagctcttcaagga 270
|||||||||||||| || |||||||| ||||||||
Sbjct: 18694316 tactgcaagacccattttgagcagctattcaagga 18694282
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 280,276
Number of Sequences: 438736
Number of extensions: 280276
Number of successful extensions: 5076
Number of sequences better than 0.5: 45
Number of HSP's better than 0.5 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4802
Number of HSP's gapped (non-prelim): 271
length of query: 487
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 466
effective length of database: 2,791,206,460
effective search space: 1300702210360
effective search space used: 1300702210360
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)