BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBJ4h04.xg.2.2
(494 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK069907.1| Oryza sativa (japonica cultivar-group) cDNA... 135 2e-029
ref|XM_473290.1| Oryza sativa (japonica cultivar-group), p... 135 2e-029
gb|AACV01010174.1| Oryza sativa (japonica cultivar-group) c... 111 4e-022
ref|XM_466988.1| Oryza sativa (japonica cultivar-group), mRNA 111 4e-022
ref|NT_079865.2| Oryza sativa (japonica cultivar-group) 111 4e-022
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 111 4e-022
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 111 4e-022
emb|AL663006.3|OSJN00204 Oryza sativa genomic DNA, chromoso... 111 4e-022
emb|AL662984.3|OSJN00183 Oryza sativa genomic DNA, chromoso... 111 4e-022
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 111 4e-022
dbj|AP004788.1| Oryza sativa (japonica cultivar-group) chro... 80 1e-012
dbj|AP004133.3| Oryza sativa (japonica cultivar-group) geno... 80 1e-012
dbj|AP004768.3| Oryza sativa (japonica cultivar-group) geno... 80 1e-012
gb|AACV01005009.1| Oryza sativa (japonica cultivar-group) c... 80 1e-012
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 80 1e-012
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 80 1e-012
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 80 1e-012
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 80 1e-012
gb|BP185090.1|BP185090 BP185090 pNS rice panicle cDNA, flow... 52 3e-004
dbj|AK072520.1| Oryza sativa (japonica cultivar-group) cDNA... 52 3e-004
ref|NM_197225.1| Oryza sativa (japonica cultivar-group) put... 52 3e-004
gb|AU030413.1|AU030413 AU030413 Rice cDNA from immature lea... 48 0.004
gb|AU065317.1|AU065317 AU065317 Rice cDNA from immature lea... 48 0.004
gb|CF323532.1|CF323532 HDN--04-B15.g1 OsHDAC1-overexpressin... 48 0.004
gb|CD670811.1|CD670811 OsMR230 5MT resistant rice mutant cD... 48 0.004
gb|CV723028.1|CV723028 root--02-E17.g1 Rice root lambda pha... 48 0.004
dbj|AK058507.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.004
gb|AC078840.6| Oryza sativa chromosome 10 BAC OSJNBb0073N24... 48 0.004
gb|AC135205.4| Oryza sativa (japonica cultivar-group) chrom... 48 0.004
gb|AC135208.3| Oryza sativa (japonica cultivar-group) chrom... 48 0.004
gb|AACV01006284.1| Oryza sativa (japonica cultivar-group) c... 48 0.004
gb|AACV01021892.1| Oryza sativa (japonica cultivar-group) c... 48 0.004
ref|NM_187463.1| Oryza sativa (japonica cultivar-group), p... 48 0.004
ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chr... 48 0.004
ref|NT_107192.1| Oryza sativa (japonica cultivar-group) 48 0.004
gb|CH401254.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.004
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.004
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.004
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.004
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 48 0.004
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 48 0.004
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.004
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 48 0.004
gb|C71856.1|C71856 C71856 Rice panicle at flowering stage O... 42 0.28
gb|AU063889.1|AU063889 AU063889 Rice panicle at flowering s... 42 0.28
>dbj|AK069907.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023034M24, full
insert sequence
Length = 955
Score = 135 bits (68), Expect = 2e-029
Identities = 124/148 (83%)
Strand = Plus / Plus
Query: 158 taccataagacatgcntcaannncngccactgcaaagggnnncnctcgatgtgcagctac 217
||||| ||||| ||| |||| | |||||||||||||| | ||||||||||||||||
Sbjct: 152 taccacaagacctgcttcaagtgcagccactgcaaagggattctctcgatgtgcagctac 211
Query: 218 tcctccatggacgnnnnnctgtactgcaagacccacttcgagcagctcttcaagnngacc 277
|| |||||||||| || ||||||||||||||||| ||||||||||||||| |||
Sbjct: 212 tcgtccatggacggcgtcctctactgcaagacccactttgagcagctcttcaaggagacg 271
Query: 278 gggagcttctccaagaacttcacgccag 305
||||||||||||||||| ||| ||||||
Sbjct: 272 gggagcttctccaagaagttcgcgccag 299
Score = 107 bits (54), Expect = 6e-021
Identities = 68/75 (90%)
Strand = Plus / Plus
Query: 67 caccatgtctttcaccggcncgcaggacaagtgcacnnnntgcgacaagaccnnccactt 126
||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||
Sbjct: 61 caccatgtctttcaccggcacgcaggacaagtgcacggcgtgcgacaagaccgtccactt 120
Query: 127 catcgacctcctcac 141
|||||||||||||||
Sbjct: 121 catcgacctcctcac 135
>ref|XM_473290.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 606
Score = 135 bits (68), Expect = 2e-029
Identities = 124/148 (83%)
Strand = Plus / Plus
Query: 158 taccataagacatgcntcaannncngccactgcaaagggnnncnctcgatgtgcagctac 217
||||| ||||| ||| |||| | |||||||||||||| | ||||||||||||||||
Sbjct: 88 taccacaagacctgcttcaagtgcagccactgcaaagggattctctcgatgtgcagctac 147
Query: 218 tcctccatggacgnnnnnctgtactgcaagacccacttcgagcagctcttcaagnngacc 277
|| |||||||||| || ||||||||||||||||| ||||||||||||||| |||
Sbjct: 148 tcgtccatggacggcgtcctctactgcaagacccactttgagcagctcttcaaggagacg 207
Query: 278 gggagcttctccaagaacttcacgccag 305
||||||||||||||||| ||| ||||||
Sbjct: 208 gggagcttctccaagaagttcgcgccag 235
Score = 99.6 bits (50), Expect = 1e-018
Identities = 64/71 (90%)
Strand = Plus / Plus
Query: 71 atgtctttcaccggcncgcaggacaagtgcacnnnntgcgacaagaccnnccacttcatc 130
||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||
Sbjct: 1 atgtctttcaccggcacgcaggacaagtgcacggcgtgcgacaagaccgtccacttcatc 60
Query: 131 gacctcctcac 141
|||||||||||
Sbjct: 61 gacctcctcac 71
>gb|AACV01010174.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010174, whole
genome shotgun sequence
Length = 20753
Score = 111 bits (56), Expect = 4e-022
Identities = 88/101 (87%)
Strand = Plus / Plus
Query: 205 gatgtgcagctactcctccatggacgnnnnnctgtactgcaagacccacttcgagcagct 264
||||||||||||||| |||||||||| || ||||||||||||||||| ||||||||
Sbjct: 8444 gatgtgcagctactcgtccatggacggcgtcctctactgcaagacccactttgagcagct 8503
Query: 265 cttcaagnngaccgggagcttctccaagaacttcacgccag 305
||||||| ||| ||||||||||||||||| ||| ||||||
Sbjct: 8504 cttcaaggagacggggagcttctccaagaagttcgcgccag 8544
Score = 107 bits (54), Expect = 6e-021
Identities = 68/75 (90%)
Strand = Plus / Plus
Query: 67 caccatgtctttcaccggcncgcaggacaagtgcacnnnntgcgacaagaccnnccactt 126
||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||
Sbjct: 8189 caccatgtctttcaccggcacgcaggacaagtgcacggcgtgcgacaagaccgtccactt 8248
Query: 127 catcgacctcctcac 141
|||||||||||||||
Sbjct: 8249 catcgacctcctcac 8263
Score = 42.1 bits (21), Expect = 0.28
Identities = 57/70 (81%)
Strand = Plus / Plus
Query: 336 caagggccccaagcaagctgtcgtctgcattttctggtacccnngataagtncgcagcat 395
||||||||||||||||| | | || || |||||||| || | ||||||| ||||| |
Sbjct: 8752 caagggccccaagcaagatatgttcagcgttttctggaactcaggataagtgtgcagcct 8811
Query: 396 gccagaaaac 405
||||||||||
Sbjct: 8812 gccagaaaac 8821
>ref|XM_466988.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 621
Score = 111 bits (56), Expect = 4e-022
Identities = 174/224 (77%)
Strand = Plus / Plus
Query: 71 atgtctttcaccggcncgcaggacaagtgcacnnnntgcgacaagaccnnccacttcatc 130
||||| ||||||||| ||||||||||||||| |||||||||||| ||| ||||||
Sbjct: 1 atgtcgttcaccggcacgcaggacaagtgcaaggcgtgcgacaagaccgtccatttcatc 60
Query: 131 gacctcctcacnnnnnacnnnnccatctaccataagacatgcntcaannncngccactgc 190
||||||||||| || | |||||| ||||||||| |||| | ||||||||
Sbjct: 61 gacctcctcaccgccgacggcgtctcctaccacaagacatgcttcaagtgcagccactgc 120
Query: 191 aaagggnnncnctcgatgtgcagctactcctccatggacgnnnnnctgtactgcaagacc 250
|| ||| | ||||||||| | |||||| || ||||| | ||||||||||||||
Sbjct: 121 aaggggaccctctcgatgtgtaactactcttcgatggatggtgtcctgtactgcaagacg 180
Query: 251 cacttcgagcagctcttcaagnngaccgggagcttctccaagaa 294
||||| |||||||||||||| ||| ||||||||||| |||||
Sbjct: 181 cactttgagcagctcttcaaagagacggggagcttctcaaagaa 224
>ref|NT_079865.2| Oryza sativa (japonica cultivar-group)
Length = 3674553
Score = 111 bits (56), Expect = 4e-022
Identities = 88/101 (87%)
Strand = Plus / Minus
Query: 205 gatgtgcagctactcctccatggacgnnnnnctgtactgcaagacccacttcgagcagct 264
||||||||||||||| |||||||||| || ||||||||||||||||| ||||||||
Sbjct: 372287 gatgtgcagctactcgtccatggacggcgtcctctactgcaagacccactttgagcagct 372228
Query: 265 cttcaagnngaccgggagcttctccaagaacttcacgccag 305
||||||| ||| ||||||||||||||||| ||| ||||||
Sbjct: 372227 cttcaaggagacggggagcttctccaagaagttcgcgccag 372187
Score = 107 bits (54), Expect = 6e-021
Identities = 68/75 (90%)
Strand = Plus / Minus
Query: 67 caccatgtctttcaccggcncgcaggacaagtgcacnnnntgcgacaagaccnnccactt 126
||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||
Sbjct: 372542 caccatgtctttcaccggcacgcaggacaagtgcacggcgtgcgacaagaccgtccactt 372483
Query: 127 catcgacctcctcac 141
|||||||||||||||
Sbjct: 372482 catcgacctcctcac 372468
Score = 42.1 bits (21), Expect = 0.28
Identities = 57/70 (81%)
Strand = Plus / Minus
Query: 336 caagggccccaagcaagctgtcgtctgcattttctggtacccnngataagtncgcagcat 395
||||||||||||||||| | | || || |||||||| || | ||||||| ||||| |
Sbjct: 371979 caagggccccaagcaagatatgttcagcgttttctggaactcaggataagtgtgcagcct 371920
Query: 396 gccagaaaac 405
||||||||||
Sbjct: 371919 gccagaaaac 371910
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 111 bits (56), Expect = 4e-022
Identities = 88/101 (87%)
Strand = Plus / Minus
Query: 205 gatgtgcagctactcctccatggacgnnnnnctgtactgcaagacccacttcgagcagct 264
||||||||||||||| |||||||||| || ||||||||||||||||| ||||||||
Sbjct: 4427487 gatgtgcagctactcgtccatggacggcgtcctctactgcaagacccactttgagcagct 4427428
Query: 265 cttcaagnngaccgggagcttctccaagaacttcacgccag 305
||||||| ||| ||||||||||||||||| ||| ||||||
Sbjct: 4427427 cttcaaggagacggggagcttctccaagaagttcgcgccag 4427387
Score = 107 bits (54), Expect = 6e-021
Identities = 68/75 (90%)
Strand = Plus / Minus
Query: 67 caccatgtctttcaccggcncgcaggacaagtgcacnnnntgcgacaagaccnnccactt 126
||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||
Sbjct: 4427742 caccatgtctttcaccggcacgcaggacaagtgcacggcgtgcgacaagaccgtccactt 4427683
Query: 127 catcgacctcctcac 141
|||||||||||||||
Sbjct: 4427682 catcgacctcctcac 4427668
Score = 42.1 bits (21), Expect = 0.28
Identities = 57/70 (81%)
Strand = Plus / Minus
Query: 336 caagggccccaagcaagctgtcgtctgcattttctggtacccnngataagtncgcagcat 395
||||||||||||||||| | | || || |||||||| || | ||||||| ||||| |
Sbjct: 4427179 caagggccccaagcaagatatgttcagcgttttctggaactcaggataagtgtgcagcct 4427120
Query: 396 gccagaaaac 405
||||||||||
Sbjct: 4427119 gccagaaaac 4427110
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 111 bits (56), Expect = 4e-022
Identities = 88/101 (87%)
Strand = Plus / Minus
Query: 205 gatgtgcagctactcctccatggacgnnnnnctgtactgcaagacccacttcgagcagct 264
||||||||||||||| |||||||||| || ||||||||||||||||| ||||||||
Sbjct: 23571586 gatgtgcagctactcgtccatggacggcgtcctctactgcaagacccactttgagcagct 23571527
Query: 265 cttcaagnngaccgggagcttctccaagaacttcacgccag 305
||||||| ||| ||||||||||||||||| ||| ||||||
Sbjct: 23571526 cttcaaggagacggggagcttctccaagaagttcgcgccag 23571486
Score = 107 bits (54), Expect = 6e-021
Identities = 68/75 (90%)
Strand = Plus / Minus
Query: 67 caccatgtctttcaccggcncgcaggacaagtgcacnnnntgcgacaagaccnnccactt 126
||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||
Sbjct: 23571841 caccatgtctttcaccggcacgcaggacaagtgcacggcgtgcgacaagaccgtccactt 23571782
Query: 127 catcgacctcctcac 141
|||||||||||||||
Sbjct: 23571781 catcgacctcctcac 23571767
Score = 42.1 bits (21), Expect = 0.28
Identities = 57/70 (81%)
Strand = Plus / Minus
Query: 336 caagggccccaagcaagctgtcgtctgcattttctggtacccnngataagtncgcagcat 395
||||||||||||||||| | | || || |||||||| || | ||||||| ||||| |
Sbjct: 23571278 caagggccccaagcaagatatgttcagcgttttctggaactcaggataagtgtgcagcct 23571219
Query: 396 gccagaaaac 405
||||||||||
Sbjct: 23571218 gccagaaaac 23571209
>emb|AL663006.3|OSJN00204 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0039L24,
complete sequence
Length = 121056
Score = 111 bits (56), Expect = 4e-022
Identities = 88/101 (87%)
Strand = Plus / Minus
Query: 205 gatgtgcagctactcctccatggacgnnnnnctgtactgcaagacccacttcgagcagct 264
||||||||||||||| |||||||||| || ||||||||||||||||| ||||||||
Sbjct: 35261 gatgtgcagctactcgtccatggacggcgtcctctactgcaagacccactttgagcagct 35202
Query: 265 cttcaagnngaccgggagcttctccaagaacttcacgccag 305
||||||| ||| ||||||||||||||||| ||| ||||||
Sbjct: 35201 cttcaaggagacggggagcttctccaagaagttcgcgccag 35161
Score = 107 bits (54), Expect = 6e-021
Identities = 68/75 (90%)
Strand = Plus / Minus
Query: 67 caccatgtctttcaccggcncgcaggacaagtgcacnnnntgcgacaagaccnnccactt 126
||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||
Sbjct: 35516 caccatgtctttcaccggcacgcaggacaagtgcacggcgtgcgacaagaccgtccactt 35457
Query: 127 catcgacctcctcac 141
|||||||||||||||
Sbjct: 35456 catcgacctcctcac 35442
Score = 42.1 bits (21), Expect = 0.28
Identities = 57/70 (81%)
Strand = Plus / Minus
Query: 336 caagggccccaagcaagctgtcgtctgcattttctggtacccnngataagtncgcagcat 395
||||||||||||||||| | | || || |||||||| || | ||||||| ||||| |
Sbjct: 34953 caagggccccaagcaagatatgttcagcgttttctggaactcaggataagtgtgcagcct 34894
Query: 396 gccagaaaac 405
||||||||||
Sbjct: 34893 gccagaaaac 34884
>emb|AL662984.3|OSJN00183 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0081C01,
complete sequence
Length = 140454
Score = 111 bits (56), Expect = 4e-022
Identities = 88/101 (87%)
Strand = Plus / Minus
Query: 205 gatgtgcagctactcctccatggacgnnnnnctgtactgcaagacccacttcgagcagct 264
||||||||||||||| |||||||||| || ||||||||||||||||| ||||||||
Sbjct: 132589 gatgtgcagctactcgtccatggacggcgtcctctactgcaagacccactttgagcagct 132530
Query: 265 cttcaagnngaccgggagcttctccaagaacttcacgccag 305
||||||| ||| ||||||||||||||||| ||| ||||||
Sbjct: 132529 cttcaaggagacggggagcttctccaagaagttcgcgccag 132489
Score = 107 bits (54), Expect = 6e-021
Identities = 68/75 (90%)
Strand = Plus / Minus
Query: 67 caccatgtctttcaccggcncgcaggacaagtgcacnnnntgcgacaagaccnnccactt 126
||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||
Sbjct: 132844 caccatgtctttcaccggcacgcaggacaagtgcacggcgtgcgacaagaccgtccactt 132785
Query: 127 catcgacctcctcac 141
|||||||||||||||
Sbjct: 132784 catcgacctcctcac 132770
Score = 42.1 bits (21), Expect = 0.28
Identities = 57/70 (81%)
Strand = Plus / Minus
Query: 336 caagggccccaagcaagctgtcgtctgcattttctggtacccnngataagtncgcagcat 395
||||||||||||||||| | | || || |||||||| || | ||||||| ||||| |
Sbjct: 132281 caagggccccaagcaagatatgttcagcgttttctggaactcaggataagtgtgcagcct 132222
Query: 396 gccagaaaac 405
||||||||||
Sbjct: 132221 gccagaaaac 132212
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 111 bits (56), Expect = 4e-022
Identities = 88/101 (87%)
Strand = Plus / Minus
Query: 205 gatgtgcagctactcctccatggacgnnnnnctgtactgcaagacccacttcgagcagct 264
||||||||||||||| |||||||||| || ||||||||||||||||| ||||||||
Sbjct: 26595703 gatgtgcagctactcgtccatggacggcgtcctctactgcaagacccactttgagcagct 26595644
Query: 265 cttcaagnngaccgggagcttctccaagaacttcacgccag 305
||||||| ||| ||||||||||||||||| ||| ||||||
Sbjct: 26595643 cttcaaggagacggggagcttctccaagaagttcgcgccag 26595603
Score = 107 bits (54), Expect = 6e-021
Identities = 68/75 (90%)
Strand = Plus / Minus
Query: 67 caccatgtctttcaccggcncgcaggacaagtgcacnnnntgcgacaagaccnnccactt 126
||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||
Sbjct: 26595958 caccatgtctttcaccggcacgcaggacaagtgcacggcgtgcgacaagaccgtccactt 26595899
Query: 127 catcgacctcctcac 141
|||||||||||||||
Sbjct: 26595898 catcgacctcctcac 26595884
Score = 42.1 bits (21), Expect = 0.28
Identities = 57/70 (81%)
Strand = Plus / Minus
Query: 336 caagggccccaagcaagctgtcgtctgcattttctggtacccnngataagtncgcagcat 395
||||||||||||||||| | | || || |||||||| || | ||||||| ||||| |
Sbjct: 26595395 caagggccccaagcaagatatgttcagcgttttctggaactcaggataagtgtgcagcct 26595336
Query: 396 gccagaaaac 405
||||||||||
Sbjct: 26595335 gccagaaaac 26595326
>dbj|AP004788.1| Oryza sativa (japonica cultivar-group) chromosome 2 clone P0408D11, ***
SEQUENCING IN PROGRESS ***
Length = 138934
Score = 79.8 bits (40), Expect = 1e-012
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 69 ccatgtctttcaccggcncgcaggacaagtgcacnnnntgcgacaagaccnnccacttca 128
||||||| ||||||||| ||||||||||||||| |||||||||||| ||| ||||
Sbjct: 77839 ccatgtcgttcaccggcacgcaggacaagtgcaaggcgtgcgacaagaccgtccatttca 77898
Query: 129 tcgacctcctcac 141
|||||||||||||
Sbjct: 77899 tcgacctcctcac 77911
Score = 65.9 bits (33), Expect = 2e-008
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 236 ctgtactgcaagacccacttcgagcagctcttcaagnngaccgggagcttctccaagaa 294
|||||||||||||| ||||| |||||||||||||| ||| ||||||||||| |||||
Sbjct: 78109 ctgtactgcaagacgcactttgagcagctcttcaaagagacggggagcttctcaaagaa 78167
>dbj|AP004133.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1112_G03
Length = 106401
Score = 79.8 bits (40), Expect = 1e-012
Identities = 63/73 (86%)
Strand = Plus / Minus
Query: 69 ccatgtctttcaccggcncgcaggacaagtgcacnnnntgcgacaagaccnnccacttca 128
||||||| ||||||||| ||||||||||||||| |||||||||||| ||| ||||
Sbjct: 6153 ccatgtcgttcaccggcacgcaggacaagtgcaaggcgtgcgacaagaccgtccatttca 6094
Query: 129 tcgacctcctcac 141
|||||||||||||
Sbjct: 6093 tcgacctcctcac 6081
Score = 65.9 bits (33), Expect = 2e-008
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 236 ctgtactgcaagacccacttcgagcagctcttcaagnngaccgggagcttctccaagaa 294
|||||||||||||| ||||| |||||||||||||| ||| ||||||||||| |||||
Sbjct: 5883 ctgtactgcaagacgcactttgagcagctcttcaaagagacggggagcttctcaaagaa 5825
>dbj|AP004768.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0010C01
Length = 186185
Score = 79.8 bits (40), Expect = 1e-012
Identities = 63/73 (86%)
Strand = Plus / Minus
Query: 69 ccatgtctttcaccggcncgcaggacaagtgcacnnnntgcgacaagaccnnccacttca 128
||||||| ||||||||| ||||||||||||||| |||||||||||| ||| ||||
Sbjct: 162223 ccatgtcgttcaccggcacgcaggacaagtgcaaggcgtgcgacaagaccgtccatttca 162164
Query: 129 tcgacctcctcac 141
|||||||||||||
Sbjct: 162163 tcgacctcctcac 162151
Score = 65.9 bits (33), Expect = 2e-008
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 236 ctgtactgcaagacccacttcgagcagctcttcaagnngaccgggagcttctccaagaa 294
|||||||||||||| ||||| |||||||||||||| ||| ||||||||||| |||||
Sbjct: 161953 ctgtactgcaagacgcactttgagcagctcttcaaagagacggggagcttctcaaagaa 161895
>gb|AACV01005009.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005009, whole
genome shotgun sequence
Length = 78753
Score = 79.8 bits (40), Expect = 1e-012
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 69 ccatgtctttcaccggcncgcaggacaagtgcacnnnntgcgacaagaccnnccacttca 128
||||||| ||||||||| ||||||||||||||| |||||||||||| ||| ||||
Sbjct: 76465 ccatgtcgttcaccggcacgcaggacaagtgcaaggcgtgcgacaagaccgtccatttca 76524
Query: 129 tcgacctcctcac 141
|||||||||||||
Sbjct: 76525 tcgacctcctcac 76537
Score = 65.9 bits (33), Expect = 2e-008
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 236 ctgtactgcaagacccacttcgagcagctcttcaagnngaccgggagcttctccaagaa 294
|||||||||||||| ||||| |||||||||||||| ||| ||||||||||| |||||
Sbjct: 76735 ctgtactgcaagacgcactttgagcagctcttcaaagagacggggagcttctcaaagaa 76793
>ref|NT_107181.1| Oryza sativa (japonica cultivar-group)
Length = 9248309
Score = 79.8 bits (40), Expect = 1e-012
Identities = 63/73 (86%)
Strand = Plus / Minus
Query: 69 ccatgtctttcaccggcncgcaggacaagtgcacnnnntgcgacaagaccnnccacttca 128
||||||| ||||||||| ||||||||||||||| |||||||||||| ||| ||||
Sbjct: 924546 ccatgtcgttcaccggcacgcaggacaagtgcaaggcgtgcgacaagaccgtccatttca 924487
Query: 129 tcgacctcctcac 141
|||||||||||||
Sbjct: 924486 tcgacctcctcac 924474
Score = 65.9 bits (33), Expect = 2e-008
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 236 ctgtactgcaagacccacttcgagcagctcttcaagnngaccgggagcttctccaagaa 294
|||||||||||||| ||||| |||||||||||||| ||| ||||||||||| |||||
Sbjct: 924276 ctgtactgcaagacgcactttgagcagctcttcaaagagacggggagcttctcaaagaa 924218
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 79.8 bits (40), Expect = 1e-012
Identities = 63/73 (86%)
Strand = Plus / Minus
Query: 69 ccatgtctttcaccggcncgcaggacaagtgcacnnnntgcgacaagaccnnccacttca 128
||||||| ||||||||| ||||||||||||||| |||||||||||| ||| ||||
Sbjct: 12119921 ccatgtcgttcaccggcacgcaggacaagtgcaaggcgtgcgacaagaccgtccatttca 12119862
Query: 129 tcgacctcctcac 141
|||||||||||||
Sbjct: 12119861 tcgacctcctcac 12119849
Score = 65.9 bits (33), Expect = 2e-008
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 236 ctgtactgcaagacccacttcgagcagctcttcaagnngaccgggagcttctccaagaa 294
|||||||||||||| ||||| |||||||||||||| ||| ||||||||||| |||||
Sbjct: 12119651 ctgtactgcaagacgcactttgagcagctcttcaaagagacggggagcttctcaaagaa 12119593
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 79.8 bits (40), Expect = 1e-012
Identities = 63/73 (86%)
Strand = Plus / Minus
Query: 69 ccatgtctttcaccggcncgcaggacaagtgcacnnnntgcgacaagaccnnccacttca 128
||||||| ||||||||| ||||||||||||||| |||||||||||| ||| ||||
Sbjct: 25572985 ccatgtcgttcaccggcacgcaggacaagtgcaaggcgtgcgacaagaccgtccatttca 25572926
Query: 129 tcgacctcctcac 141
|||||||||||||
Sbjct: 25572925 tcgacctcctcac 25572913
Score = 65.9 bits (33), Expect = 2e-008
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 236 ctgtactgcaagacccacttcgagcagctcttcaagnngaccgggagcttctccaagaa 294
|||||||||||||| ||||| |||||||||||||| ||| ||||||||||| |||||
Sbjct: 25572715 ctgtactgcaagacgcactttgagcagctcttcaaagagacggggagcttctcaaagaa 25572657
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 79.8 bits (40), Expect = 1e-012
Identities = 63/73 (86%)
Strand = Plus / Minus
Query: 69 ccatgtctttcaccggcncgcaggacaagtgcacnnnntgcgacaagaccnnccacttca 128
||||||| ||||||||| ||||||||||||||| |||||||||||| ||| ||||
Sbjct: 25759547 ccatgtcgttcaccggcacgcaggacaagtgcaaggcgtgcgacaagaccgtccatttca 25759488
Query: 129 tcgacctcctcac 141
|||||||||||||
Sbjct: 25759487 tcgacctcctcac 25759475
Score = 65.9 bits (33), Expect = 2e-008
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 236 ctgtactgcaagacccacttcgagcagctcttcaagnngaccgggagcttctccaagaa 294
|||||||||||||| ||||| |||||||||||||| ||| ||||||||||| |||||
Sbjct: 25759277 ctgtactgcaagacgcactttgagcagctcttcaaagagacggggagcttctcaaagaa 25759219
>gb|BP185090.1|BP185090 BP185090 pNS rice panicle cDNA, flowering stage Oryza sativa
(japonica cultivar-group) cDNA clone pNS-YP32, mRNA
sequence
Length = 595
Score = 52.0 bits (26), Expect = 3e-004
Identities = 57/69 (82%)
Strand = Plus / Plus
Query: 203 tcgatgtgcagctactcctccatggacgnnnnnctgtactgcaagacccacttcgagcag 262
|||||||||||||| || |||||||| | || |||||||||||||| || ||||||
Sbjct: 193 tcgatgtgcagctattcgtccatggatggggttctttactgcaagacccattttgagcag 252
Query: 263 ctcttcaag 271
|| ||||||
Sbjct: 253 ctattcaag 261
>dbj|AK072520.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023131K23, full
insert sequence
Length = 1267
Score = 52.0 bits (26), Expect = 3e-004
Identities = 57/69 (82%)
Strand = Plus / Plus
Query: 203 tcgatgtgcagctactcctccatggacgnnnnnctgtactgcaagacccacttcgagcag 262
|||||||||||||| || |||||||| | || |||||||||||||| || ||||||
Sbjct: 331 tcgatgtgcagctattcgtccatggatggggttctttactgcaagacccattttgagcag 390
Query: 263 ctcttcaag 271
|| ||||||
Sbjct: 391 ctattcaag 399
>ref|NM_197225.1| Oryza sativa (japonica cultivar-group) putative LIM domain protein
(OSJNBb0073N24.9), mRNA
Length = 1040
Score = 52.0 bits (26), Expect = 3e-004
Identities = 57/69 (82%)
Strand = Plus / Plus
Query: 203 tcgatgtgcagctactcctccatggacgnnnnnctgtactgcaagacccacttcgagcag 262
|||||||||||||| || |||||||| | || |||||||||||||| || ||||||
Sbjct: 310 tcgatgtgcagctattcgtccatggatggggttctttactgcaagacccattttgagcag 369
Query: 263 ctcttcaag 271
|| ||||||
Sbjct: 370 ctattcaag 378
>gb|AU030413.1|AU030413 AU030413 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E51032_1A, mRNA sequence
Length = 399
Score = 48.1 bits (24), Expect = 0.004
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 239 tactgcaagacccacttcgagcagctcttcaagnngaccgggagct 284
||||||||| |||| |||||||| || |||||| |||||||||||
Sbjct: 274 tactgcaagccccatttcgagcaactgttcaaggagaccgggagct 319
>gb|AU065317.1|AU065317 AU065317 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E61601_1A, mRNA sequence
Length = 485
Score = 48.1 bits (24), Expect = 0.004
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 239 tactgcaagacccacttcgagcagctcttcaagnngaccgggagct 284
||||||||| |||| |||||||| || |||||| |||||||||||
Sbjct: 352 tactgcaagccccatttcgagcaactgttcaaggagaccgggagct 397
>gb|CF323532.1|CF323532 HDN--04-B15.g1 OsHDAC1-overexpressing transgenic rice lambda phage
cDNA library II (HDN) Oryza sativa (japonica
cultivar-group) cDNA clone HDN--04-B15, mRNA sequence
Length = 512
Score = 48.1 bits (24), Expect = 0.004
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 239 tactgcaagacccacttcgagcagctcttcaagnngaccgggagct 284
||||||||| |||| |||||||| || |||||| |||||||||||
Sbjct: 325 tactgcaagccccatttcgagcaactgttcaaggagaccgggagct 370
>gb|CD670811.1|CD670811 OsMR230 5MT resistant rice mutant cDNA library Oryza sativa
(japonica cultivar-group) cDNA, mRNA sequence
Length = 612
Score = 48.1 bits (24), Expect = 0.004
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 239 tactgcaagacccacttcgagcagctcttcaagnngaccgggagct 284
||||||||| |||| |||||||| || |||||| |||||||||||
Sbjct: 181 tactgcaagccccatttcgagcaactgttcaaggagaccgggagct 226
>gb|CV723028.1|CV723028 root--02-E17.g1 Rice root lambda phage cDNA library (root) Oryza
sativa (japonica cultivar-group) cDNA clone
root--02-E17, mRNA sequence
Length = 482
Score = 48.1 bits (24), Expect = 0.004
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 239 tactgcaagacccacttcgagcagctcttcaagnngaccgggagct 284
||||||||| |||| |||||||| || |||||| |||||||||||
Sbjct: 255 tactgcaagccccatttcgagcaactgttcaaggagaccgggagct 300
>dbj|AK058507.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-G03, full
insert sequence
Length = 962
Score = 48.1 bits (24), Expect = 0.004
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 239 tactgcaagacccacttcgagcagctcttcaagnngaccgggagct 284
||||||||| |||| |||||||| || |||||| |||||||||||
Sbjct: 342 tactgcaagccccatttcgagcaactgttcaaggagaccgggagct 387
>gb|AC078840.6| Oryza sativa chromosome 10 BAC OSJNBb0073N24 genomic sequence, complete
sequence
Length = 130058
Score = 48.1 bits (24), Expect = 0.004
Identities = 55/67 (82%)
Strand = Plus / Minus
Query: 205 gatgtgcagctactcctccatggacgnnnnnctgtactgcaagacccacttcgagcagct 264
|||||||||||| || |||||||| | || |||||||||||||| || ||||||||
Sbjct: 44775 gatgtgcagctattcgtccatggatggggttctttactgcaagacccattttgagcagct 44716
Query: 265 cttcaag 271
||||||
Sbjct: 44715 attcaag 44709
>gb|AC135205.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1012B02,
complete sequence
Length = 115270
Score = 48.1 bits (24), Expect = 0.004
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 239 tactgcaagacccacttcgagcagctcttcaagnngaccgggagct 284
||||||||| |||| |||||||| || |||||| |||||||||||
Sbjct: 114583 tactgcaagccccatttcgagcaactgttcaaggagaccgggagct 114628
>gb|AC135208.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1364E02,
complete sequence
Length = 112265
Score = 48.1 bits (24), Expect = 0.004
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 239 tactgcaagacccacttcgagcagctcttcaagnngaccgggagct 284
||||||||| |||| |||||||| || |||||| |||||||||||
Sbjct: 14085 tactgcaagccccatttcgagcaactgttcaaggagaccgggagct 14130
>gb|AACV01006284.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006284, whole
genome shotgun sequence
Length = 17397
Score = 48.1 bits (24), Expect = 0.004
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 239 tactgcaagacccacttcgagcagctcttcaagnngaccgggagct 284
||||||||| |||| |||||||| || |||||| |||||||||||
Sbjct: 1205 tactgcaagccccatttcgagcaactgttcaaggagaccgggagct 1250
>gb|AACV01021892.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg021892, whole
genome shotgun sequence
Length = 87744
Score = 48.1 bits (24), Expect = 0.004
Identities = 55/67 (82%)
Strand = Plus / Minus
Query: 205 gatgtgcagctactcctccatggacgnnnnnctgtactgcaagacccacttcgagcagct 264
|||||||||||| || |||||||| | || |||||||||||||| || ||||||||
Sbjct: 51203 gatgtgcagctattcgtccatggatggggttctttactgcaagacccattttgagcagct 51144
Query: 265 cttcaag 271
||||||
Sbjct: 51143 attcaag 51137
>ref|NM_187463.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 591
Score = 48.1 bits (24), Expect = 0.004
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 239 tactgcaagacccacttcgagcagctcttcaagnngaccgggagct 284
||||||||| |||| |||||||| || |||||| |||||||||||
Sbjct: 166 tactgcaagccccatttcgagcaactgttcaaggagaccgggagct 211
>ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chromosome 10
Length = 4609300
Score = 48.1 bits (24), Expect = 0.004
Identities = 55/67 (82%)
Strand = Plus / Minus
Query: 205 gatgtgcagctactcctccatggacgnnnnnctgtactgcaagacccacttcgagcagct 264
|||||||||||| || |||||||| | || |||||||||||||| || ||||||||
Sbjct: 605291 gatgtgcagctattcgtccatggatggggttctttactgcaagacccattttgagcagct 605232
Query: 265 cttcaag 271
||||||
Sbjct: 605231 attcaag 605225
>ref|NT_107192.1| Oryza sativa (japonica cultivar-group)
Length = 4781381
Score = 48.1 bits (24), Expect = 0.004
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 239 tactgcaagacccacttcgagcagctcttcaagnngaccgggagct 284
||||||||| |||| |||||||| || |||||| |||||||||||
Sbjct: 114583 tactgcaagccccatttcgagcaactgttcaaggagaccgggagct 114628
>gb|CH401254.1| Oryza sativa (japonica cultivar-group) chromosome 10 scaffold000091 genomic
scaffold, whole genome shotgun sequence
Length = 10615099
Score = 48.1 bits (24), Expect = 0.004
Identities = 55/67 (82%)
Strand = Plus / Minus
Query: 205 gatgtgcagctactcctccatggacgnnnnnctgtactgcaagacccacttcgagcagct 264
|||||||||||| || |||||||| | || |||||||||||||| || ||||||||
Sbjct: 6719555 gatgtgcagctattcgtccatggatggggttctttactgcaagacccattttgagcagct 6719496
Query: 265 cttcaag 271
||||||
Sbjct: 6719495 attcaag 6719489
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
scaffold, whole genome shotgun sequence
Length = 13858245
Score = 48.1 bits (24), Expect = 0.004
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 239 tactgcaagacccacttcgagcagctcttcaagnngaccgggagct 284
||||||||| |||| |||||||| || |||||| |||||||||||
Sbjct: 8727001 tactgcaagccccatttcgagcaactgttcaaggagaccgggagct 8727046
>gb|CM000147.1| Oryza sativa (japonica cultivar-group) chromosome 10, whole genome shotgun
sequence
Length = 21480893
Score = 48.1 bits (24), Expect = 0.004
Identities = 55/67 (82%)
Strand = Plus / Minus
Query: 205 gatgtgcagctactcctccatggacgnnnnnctgtactgcaagacccacttcgagcagct 264
|||||||||||| || |||||||| | || |||||||||||||| || ||||||||
Sbjct: 17585349 gatgtgcagctattcgtccatggatggggttctttactgcaagacccattttgagcagct 17585290
Query: 265 cttcaag 271
||||||
Sbjct: 17585289 attcaag 17585283
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 48.1 bits (24), Expect = 0.004
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 239 tactgcaagacccacttcgagcagctcttcaagnngaccgggagct 284
||||||||| |||| |||||||| || |||||| |||||||||||
Sbjct: 8919363 tactgcaagccccatttcgagcaactgttcaaggagaccgggagct 8919408
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 48.1 bits (24), Expect = 0.004
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 239 tactgcaagacccacttcgagcagctcttcaagnngaccgggagct 284
||||||||| |||| |||||||| || |||||| |||||||||||
Sbjct: 8768767 tactgcaagccccatttcgagcaactgttcaaggagaccgggagct 8768812
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
sequence
Length = 22685906
Score = 48.1 bits (24), Expect = 0.004
Identities = 55/67 (82%)
Strand = Plus / Minus
Query: 205 gatgtgcagctactcctccatggacgnnnnnctgtactgcaagacccacttcgagcagct 264
|||||||||||| || |||||||| | || |||||||||||||| || ||||||||
Sbjct: 18683497 gatgtgcagctattcgtccatggatggggttctttactgcaagacccattttgagcagct 18683438
Query: 265 cttcaag 271
||||||
Sbjct: 18683437 attcaag 18683431
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 48.1 bits (24), Expect = 0.004
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 239 tactgcaagacccacttcgagcagctcttcaagnngaccgggagct 284
||||||||| |||| |||||||| || |||||| |||||||||||
Sbjct: 8770932 tactgcaagccccatttcgagcaactgttcaaggagaccgggagct 8770977
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
Length = 22698374
Score = 48.1 bits (24), Expect = 0.004
Identities = 55/67 (82%)
Strand = Plus / Minus
Query: 205 gatgtgcagctactcctccatggacgnnnnnctgtactgcaagacccacttcgagcagct 264
|||||||||||| || |||||||| | || |||||||||||||| || ||||||||
Sbjct: 18694350 gatgtgcagctattcgtccatggatggggttctttactgcaagacccattttgagcagct 18694291
Query: 265 cttcaag 271
||||||
Sbjct: 18694290 attcaag 18694284
>gb|C71856.1|C71856 C71856 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E0473_1A, mRNA sequence
Length = 459
Score = 42.1 bits (21), Expect = 0.28
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 239 tactgcaagacccacttcgagcagctcttcaag 271
|||||||||||||| || |||||||| ||||||
Sbjct: 355 tactgcaagacccattttgagcagctattcaag 387
>gb|AU063889.1|AU063889 AU063889 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E1632_1A, mRNA sequence
Length = 463
Score = 42.1 bits (21), Expect = 0.28
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 239 tactgcaagacccacttcgagcagctcttcaag 271
|||||||||||||| || |||||||| ||||||
Sbjct: 344 tactgcaagacccattttgagcagctattcaag 376
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 260,116
Number of Sequences: 438736
Number of extensions: 260116
Number of successful extensions: 4133
Number of sequences better than 0.5: 45
Number of HSP's better than 0.5 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3922
Number of HSP's gapped (non-prelim): 192
length of query: 494
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 473
effective length of database: 2,791,206,460
effective search space: 1320240655580
effective search space used: 1320240655580
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)