BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBJ4h04.xg.2.1
(393 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK069907.1| Oryza sativa (japonica cultivar-group) cDNA... 100 1e-018
ref|XM_473290.1| Oryza sativa (japonica cultivar-group), p... 100 1e-018
gb|AACV01010174.1| Oryza sativa (japonica cultivar-group) c... 82 3e-013
ref|NT_079865.2| Oryza sativa (japonica cultivar-group) 82 3e-013
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 82 3e-013
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 82 3e-013
emb|AL663006.3|OSJN00204 Oryza sativa genomic DNA, chromoso... 82 3e-013
emb|AL662984.3|OSJN00183 Oryza sativa genomic DNA, chromoso... 82 3e-013
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 82 3e-013
dbj|AP004788.1| Oryza sativa (japonica cultivar-group) chro... 48 0.004
dbj|AP004133.3| Oryza sativa (japonica cultivar-group) geno... 48 0.004
dbj|AP004768.3| Oryza sativa (japonica cultivar-group) geno... 48 0.004
gb|AACV01005009.1| Oryza sativa (japonica cultivar-group) c... 48 0.004
ref|XM_466988.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.004
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 48 0.004
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.004
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.004
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 48 0.004
>dbj|AK069907.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023034M24, full
insert sequence
Length = 955
Score = 99.6 bits (50), Expect = 1e-018
Identities = 100/122 (81%)
Strand = Plus / Plus
Query: 182 ccactgcaaagggnnnntctcgatgtncngctactcctccatggacgnnnnnctgtactg 241
||||||||||||| ||||||||| | ||||||| |||||||||| || |||||
Sbjct: 178 ccactgcaaagggattctctcgatgtgcagctactcgtccatggacggcgtcctctactg 237
Query: 242 caagacccacttcnngcagctcttcaagnnnaccgggagcttctccaagaacttcacgcc 301
|||||||||||| ||||||||||||| || ||||||||||||||||| ||| ||||
Sbjct: 238 caagacccactttgagcagctcttcaaggagacggggagcttctccaagaagttcgcgcc 297
Query: 302 ag 303
||
Sbjct: 298 ag 299
Score = 71.9 bits (36), Expect = 2e-010
Identities = 62/75 (82%)
Strand = Plus / Plus
Query: 65 caccatgtctttcaccggcncgcngnacaagtgcacnnnntgcgacaagnnnnnncactt 124
||||||||||||||||||| ||| | |||||||||| ||||||||| |||||
Sbjct: 61 caccatgtctttcaccggcacgcaggacaagtgcacggcgtgcgacaagaccgtccactt 120
Query: 125 catcgacctcctcac 139
|||||||||||||||
Sbjct: 121 catcgacctcctcac 135
>ref|XM_473290.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 606
Score = 99.6 bits (50), Expect = 1e-018
Identities = 100/122 (81%)
Strand = Plus / Plus
Query: 182 ccactgcaaagggnnnntctcgatgtncngctactcctccatggacgnnnnnctgtactg 241
||||||||||||| ||||||||| | ||||||| |||||||||| || |||||
Sbjct: 114 ccactgcaaagggattctctcgatgtgcagctactcgtccatggacggcgtcctctactg 173
Query: 242 caagacccacttcnngcagctcttcaagnnnaccgggagcttctccaagaacttcacgcc 301
|||||||||||| ||||||||||||| || ||||||||||||||||| ||| ||||
Sbjct: 174 caagacccactttgagcagctcttcaaggagacggggagcttctccaagaagttcgcgcc 233
Query: 302 ag 303
||
Sbjct: 234 ag 235
Score = 63.9 bits (32), Expect = 6e-008
Identities = 58/71 (81%)
Strand = Plus / Plus
Query: 69 atgtctttcaccggcncgcngnacaagtgcacnnnntgcgacaagnnnnnncacttcatc 128
||||||||||||||| ||| | |||||||||| ||||||||| |||||||||
Sbjct: 1 atgtctttcaccggcacgcaggacaagtgcacggcgtgcgacaagaccgtccacttcatc 60
Query: 129 gacctcctcac 139
|||||||||||
Sbjct: 61 gacctcctcac 71
>gb|AACV01010174.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010174, whole
genome shotgun sequence
Length = 20753
Score = 81.8 bits (41), Expect = 3e-013
Identities = 83/101 (82%)
Strand = Plus / Plus
Query: 203 gatgtncngctactcctccatggacgnnnnnctgtactgcaagacccacttcnngcagct 262
||||| | ||||||| |||||||||| || ||||||||||||||||| ||||||
Sbjct: 8444 gatgtgcagctactcgtccatggacggcgtcctctactgcaagacccactttgagcagct 8503
Query: 263 cttcaagnnnaccgggagcttctccaagaacttcacgccag 303
||||||| || ||||||||||||||||| ||| ||||||
Sbjct: 8504 cttcaaggagacggggagcttctccaagaagttcgcgccag 8544
Score = 71.9 bits (36), Expect = 2e-010
Identities = 62/75 (82%)
Strand = Plus / Plus
Query: 65 caccatgtctttcaccggcncgcngnacaagtgcacnnnntgcgacaagnnnnnncactt 124
||||||||||||||||||| ||| | |||||||||| ||||||||| |||||
Sbjct: 8189 caccatgtctttcaccggcacgcaggacaagtgcacggcgtgcgacaagaccgtccactt 8248
Query: 125 catcgacctcctcac 139
|||||||||||||||
Sbjct: 8249 catcgacctcctcac 8263
>ref|NT_079865.2| Oryza sativa (japonica cultivar-group)
Length = 3674553
Score = 81.8 bits (41), Expect = 3e-013
Identities = 83/101 (82%)
Strand = Plus / Minus
Query: 203 gatgtncngctactcctccatggacgnnnnnctgtactgcaagacccacttcnngcagct 262
||||| | ||||||| |||||||||| || ||||||||||||||||| ||||||
Sbjct: 372287 gatgtgcagctactcgtccatggacggcgtcctctactgcaagacccactttgagcagct 372228
Query: 263 cttcaagnnnaccgggagcttctccaagaacttcacgccag 303
||||||| || ||||||||||||||||| ||| ||||||
Sbjct: 372227 cttcaaggagacggggagcttctccaagaagttcgcgccag 372187
Score = 71.9 bits (36), Expect = 2e-010
Identities = 62/75 (82%)
Strand = Plus / Minus
Query: 65 caccatgtctttcaccggcncgcngnacaagtgcacnnnntgcgacaagnnnnnncactt 124
||||||||||||||||||| ||| | |||||||||| ||||||||| |||||
Sbjct: 372542 caccatgtctttcaccggcacgcaggacaagtgcacggcgtgcgacaagaccgtccactt 372483
Query: 125 catcgacctcctcac 139
|||||||||||||||
Sbjct: 372482 catcgacctcctcac 372468
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 81.8 bits (41), Expect = 3e-013
Identities = 83/101 (82%)
Strand = Plus / Minus
Query: 203 gatgtncngctactcctccatggacgnnnnnctgtactgcaagacccacttcnngcagct 262
||||| | ||||||| |||||||||| || ||||||||||||||||| ||||||
Sbjct: 4427487 gatgtgcagctactcgtccatggacggcgtcctctactgcaagacccactttgagcagct 4427428
Query: 263 cttcaagnnnaccgggagcttctccaagaacttcacgccag 303
||||||| || ||||||||||||||||| ||| ||||||
Sbjct: 4427427 cttcaaggagacggggagcttctccaagaagttcgcgccag 4427387
Score = 71.9 bits (36), Expect = 2e-010
Identities = 62/75 (82%)
Strand = Plus / Minus
Query: 65 caccatgtctttcaccggcncgcngnacaagtgcacnnnntgcgacaagnnnnnncactt 124
||||||||||||||||||| ||| | |||||||||| ||||||||| |||||
Sbjct: 4427742 caccatgtctttcaccggcacgcaggacaagtgcacggcgtgcgacaagaccgtccactt 4427683
Query: 125 catcgacctcctcac 139
|||||||||||||||
Sbjct: 4427682 catcgacctcctcac 4427668
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 81.8 bits (41), Expect = 3e-013
Identities = 83/101 (82%)
Strand = Plus / Minus
Query: 203 gatgtncngctactcctccatggacgnnnnnctgtactgcaagacccacttcnngcagct 262
||||| | ||||||| |||||||||| || ||||||||||||||||| ||||||
Sbjct: 23571586 gatgtgcagctactcgtccatggacggcgtcctctactgcaagacccactttgagcagct 23571527
Query: 263 cttcaagnnnaccgggagcttctccaagaacttcacgccag 303
||||||| || ||||||||||||||||| ||| ||||||
Sbjct: 23571526 cttcaaggagacggggagcttctccaagaagttcgcgccag 23571486
Score = 71.9 bits (36), Expect = 2e-010
Identities = 62/75 (82%)
Strand = Plus / Minus
Query: 65 caccatgtctttcaccggcncgcngnacaagtgcacnnnntgcgacaagnnnnnncactt 124
||||||||||||||||||| ||| | |||||||||| ||||||||| |||||
Sbjct: 23571841 caccatgtctttcaccggcacgcaggacaagtgcacggcgtgcgacaagaccgtccactt 23571782
Query: 125 catcgacctcctcac 139
|||||||||||||||
Sbjct: 23571781 catcgacctcctcac 23571767
>emb|AL663006.3|OSJN00204 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0039L24,
complete sequence
Length = 121056
Score = 81.8 bits (41), Expect = 3e-013
Identities = 83/101 (82%)
Strand = Plus / Minus
Query: 203 gatgtncngctactcctccatggacgnnnnnctgtactgcaagacccacttcnngcagct 262
||||| | ||||||| |||||||||| || ||||||||||||||||| ||||||
Sbjct: 35261 gatgtgcagctactcgtccatggacggcgtcctctactgcaagacccactttgagcagct 35202
Query: 263 cttcaagnnnaccgggagcttctccaagaacttcacgccag 303
||||||| || ||||||||||||||||| ||| ||||||
Sbjct: 35201 cttcaaggagacggggagcttctccaagaagttcgcgccag 35161
Score = 71.9 bits (36), Expect = 2e-010
Identities = 62/75 (82%)
Strand = Plus / Minus
Query: 65 caccatgtctttcaccggcncgcngnacaagtgcacnnnntgcgacaagnnnnnncactt 124
||||||||||||||||||| ||| | |||||||||| ||||||||| |||||
Sbjct: 35516 caccatgtctttcaccggcacgcaggacaagtgcacggcgtgcgacaagaccgtccactt 35457
Query: 125 catcgacctcctcac 139
|||||||||||||||
Sbjct: 35456 catcgacctcctcac 35442
>emb|AL662984.3|OSJN00183 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0081C01,
complete sequence
Length = 140454
Score = 81.8 bits (41), Expect = 3e-013
Identities = 83/101 (82%)
Strand = Plus / Minus
Query: 203 gatgtncngctactcctccatggacgnnnnnctgtactgcaagacccacttcnngcagct 262
||||| | ||||||| |||||||||| || ||||||||||||||||| ||||||
Sbjct: 132589 gatgtgcagctactcgtccatggacggcgtcctctactgcaagacccactttgagcagct 132530
Query: 263 cttcaagnnnaccgggagcttctccaagaacttcacgccag 303
||||||| || ||||||||||||||||| ||| ||||||
Sbjct: 132529 cttcaaggagacggggagcttctccaagaagttcgcgccag 132489
Score = 71.9 bits (36), Expect = 2e-010
Identities = 62/75 (82%)
Strand = Plus / Minus
Query: 65 caccatgtctttcaccggcncgcngnacaagtgcacnnnntgcgacaagnnnnnncactt 124
||||||||||||||||||| ||| | |||||||||| ||||||||| |||||
Sbjct: 132844 caccatgtctttcaccggcacgcaggacaagtgcacggcgtgcgacaagaccgtccactt 132785
Query: 125 catcgacctcctcac 139
|||||||||||||||
Sbjct: 132784 catcgacctcctcac 132770
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 81.8 bits (41), Expect = 3e-013
Identities = 83/101 (82%)
Strand = Plus / Minus
Query: 203 gatgtncngctactcctccatggacgnnnnnctgtactgcaagacccacttcnngcagct 262
||||| | ||||||| |||||||||| || ||||||||||||||||| ||||||
Sbjct: 26595703 gatgtgcagctactcgtccatggacggcgtcctctactgcaagacccactttgagcagct 26595644
Query: 263 cttcaagnnnaccgggagcttctccaagaacttcacgccag 303
||||||| || ||||||||||||||||| ||| ||||||
Sbjct: 26595643 cttcaaggagacggggagcttctccaagaagttcgcgccag 26595603
Score = 71.9 bits (36), Expect = 2e-010
Identities = 62/75 (82%)
Strand = Plus / Minus
Query: 65 caccatgtctttcaccggcncgcngnacaagtgcacnnnntgcgacaagnnnnnncactt 124
||||||||||||||||||| ||| | |||||||||| ||||||||| |||||
Sbjct: 26595958 caccatgtctttcaccggcacgcaggacaagtgcacggcgtgcgacaagaccgtccactt 26595899
Query: 125 catcgacctcctcac 139
|||||||||||||||
Sbjct: 26595898 catcgacctcctcac 26595884
>dbj|AP004788.1| Oryza sativa (japonica cultivar-group) chromosome 2 clone P0408D11, ***
SEQUENCING IN PROGRESS ***
Length = 138934
Score = 48.1 bits (24), Expect = 0.004
Identities = 49/59 (83%)
Strand = Plus / Plus
Query: 234 ctgtactgcaagacccacttcnngcagctcttcaagnnnaccgggagcttctccaagaa 292
|||||||||||||| ||||| |||||||||||| || ||||||||||| |||||
Sbjct: 78109 ctgtactgcaagacgcactttgagcagctcttcaaagagacggggagcttctcaaagaa 78167
Score = 44.1 bits (22), Expect = 0.055
Identities = 57/73 (78%)
Strand = Plus / Plus
Query: 67 ccatgtctttcaccggcncgcngnacaagtgcacnnnntgcgacaagnnnnnncacttca 126
||||||| ||||||||| ||| | ||||||||| ||||||||| || ||||
Sbjct: 77839 ccatgtcgttcaccggcacgcaggacaagtgcaaggcgtgcgacaagaccgtccatttca 77898
Query: 127 tcgacctcctcac 139
|||||||||||||
Sbjct: 77899 tcgacctcctcac 77911
>dbj|AP004133.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1112_G03
Length = 106401
Score = 48.1 bits (24), Expect = 0.004
Identities = 49/59 (83%)
Strand = Plus / Minus
Query: 234 ctgtactgcaagacccacttcnngcagctcttcaagnnnaccgggagcttctccaagaa 292
|||||||||||||| ||||| |||||||||||| || ||||||||||| |||||
Sbjct: 5883 ctgtactgcaagacgcactttgagcagctcttcaaagagacggggagcttctcaaagaa 5825
Score = 44.1 bits (22), Expect = 0.055
Identities = 57/73 (78%)
Strand = Plus / Minus
Query: 67 ccatgtctttcaccggcncgcngnacaagtgcacnnnntgcgacaagnnnnnncacttca 126
||||||| ||||||||| ||| | ||||||||| ||||||||| || ||||
Sbjct: 6153 ccatgtcgttcaccggcacgcaggacaagtgcaaggcgtgcgacaagaccgtccatttca 6094
Query: 127 tcgacctcctcac 139
|||||||||||||
Sbjct: 6093 tcgacctcctcac 6081
>dbj|AP004768.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0010C01
Length = 186185
Score = 48.1 bits (24), Expect = 0.004
Identities = 49/59 (83%)
Strand = Plus / Minus
Query: 234 ctgtactgcaagacccacttcnngcagctcttcaagnnnaccgggagcttctccaagaa 292
|||||||||||||| ||||| |||||||||||| || ||||||||||| |||||
Sbjct: 161953 ctgtactgcaagacgcactttgagcagctcttcaaagagacggggagcttctcaaagaa 161895
Score = 44.1 bits (22), Expect = 0.055
Identities = 57/73 (78%)
Strand = Plus / Minus
Query: 67 ccatgtctttcaccggcncgcngnacaagtgcacnnnntgcgacaagnnnnnncacttca 126
||||||| ||||||||| ||| | ||||||||| ||||||||| || ||||
Sbjct: 162223 ccatgtcgttcaccggcacgcaggacaagtgcaaggcgtgcgacaagaccgtccatttca 162164
Query: 127 tcgacctcctcac 139
|||||||||||||
Sbjct: 162163 tcgacctcctcac 162151
>gb|AACV01005009.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005009, whole
genome shotgun sequence
Length = 78753
Score = 48.1 bits (24), Expect = 0.004
Identities = 49/59 (83%)
Strand = Plus / Plus
Query: 234 ctgtactgcaagacccacttcnngcagctcttcaagnnnaccgggagcttctccaagaa 292
|||||||||||||| ||||| |||||||||||| || ||||||||||| |||||
Sbjct: 76735 ctgtactgcaagacgcactttgagcagctcttcaaagagacggggagcttctcaaagaa 76793
Score = 44.1 bits (22), Expect = 0.055
Identities = 57/73 (78%)
Strand = Plus / Plus
Query: 67 ccatgtctttcaccggcncgcngnacaagtgcacnnnntgcgacaagnnnnnncacttca 126
||||||| ||||||||| ||| | ||||||||| ||||||||| || ||||
Sbjct: 76465 ccatgtcgttcaccggcacgcaggacaagtgcaaggcgtgcgacaagaccgtccatttca 76524
Query: 127 tcgacctcctcac 139
|||||||||||||
Sbjct: 76525 tcgacctcctcac 76537
>ref|XM_466988.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 621
Score = 48.1 bits (24), Expect = 0.004
Identities = 49/59 (83%)
Strand = Plus / Plus
Query: 234 ctgtactgcaagacccacttcnngcagctcttcaagnnnaccgggagcttctccaagaa 292
|||||||||||||| ||||| |||||||||||| || ||||||||||| |||||
Sbjct: 166 ctgtactgcaagacgcactttgagcagctcttcaaagagacggggagcttctcaaagaa 224
>ref|NT_107181.1| Oryza sativa (japonica cultivar-group)
Length = 9248309
Score = 48.1 bits (24), Expect = 0.004
Identities = 49/59 (83%)
Strand = Plus / Minus
Query: 234 ctgtactgcaagacccacttcnngcagctcttcaagnnnaccgggagcttctccaagaa 292
|||||||||||||| ||||| |||||||||||| || ||||||||||| |||||
Sbjct: 924276 ctgtactgcaagacgcactttgagcagctcttcaaagagacggggagcttctcaaagaa 924218
Score = 44.1 bits (22), Expect = 0.055
Identities = 57/73 (78%)
Strand = Plus / Minus
Query: 67 ccatgtctttcaccggcncgcngnacaagtgcacnnnntgcgacaagnnnnnncacttca 126
||||||| ||||||||| ||| | ||||||||| ||||||||| || ||||
Sbjct: 924546 ccatgtcgttcaccggcacgcaggacaagtgcaaggcgtgcgacaagaccgtccatttca 924487
Query: 127 tcgacctcctcac 139
|||||||||||||
Sbjct: 924486 tcgacctcctcac 924474
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 48.1 bits (24), Expect = 0.004
Identities = 49/59 (83%)
Strand = Plus / Minus
Query: 234 ctgtactgcaagacccacttcnngcagctcttcaagnnnaccgggagcttctccaagaa 292
|||||||||||||| ||||| |||||||||||| || ||||||||||| |||||
Sbjct: 12119651 ctgtactgcaagacgcactttgagcagctcttcaaagagacggggagcttctcaaagaa 12119593
Score = 44.1 bits (22), Expect = 0.055
Identities = 57/73 (78%)
Strand = Plus / Minus
Query: 67 ccatgtctttcaccggcncgcngnacaagtgcacnnnntgcgacaagnnnnnncacttca 126
||||||| ||||||||| ||| | ||||||||| ||||||||| || ||||
Sbjct: 12119921 ccatgtcgttcaccggcacgcaggacaagtgcaaggcgtgcgacaagaccgtccatttca 12119862
Query: 127 tcgacctcctcac 139
|||||||||||||
Sbjct: 12119861 tcgacctcctcac 12119849
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 48.1 bits (24), Expect = 0.004
Identities = 49/59 (83%)
Strand = Plus / Minus
Query: 234 ctgtactgcaagacccacttcnngcagctcttcaagnnnaccgggagcttctccaagaa 292
|||||||||||||| ||||| |||||||||||| || ||||||||||| |||||
Sbjct: 25572715 ctgtactgcaagacgcactttgagcagctcttcaaagagacggggagcttctcaaagaa 25572657
Score = 44.1 bits (22), Expect = 0.055
Identities = 57/73 (78%)
Strand = Plus / Minus
Query: 67 ccatgtctttcaccggcncgcngnacaagtgcacnnnntgcgacaagnnnnnncacttca 126
||||||| ||||||||| ||| | ||||||||| ||||||||| || ||||
Sbjct: 25572985 ccatgtcgttcaccggcacgcaggacaagtgcaaggcgtgcgacaagaccgtccatttca 25572926
Query: 127 tcgacctcctcac 139
|||||||||||||
Sbjct: 25572925 tcgacctcctcac 25572913
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 48.1 bits (24), Expect = 0.004
Identities = 49/59 (83%)
Strand = Plus / Minus
Query: 234 ctgtactgcaagacccacttcnngcagctcttcaagnnnaccgggagcttctccaagaa 292
|||||||||||||| ||||| |||||||||||| || ||||||||||| |||||
Sbjct: 25759277 ctgtactgcaagacgcactttgagcagctcttcaaagagacggggagcttctcaaagaa 25759219
Score = 44.1 bits (22), Expect = 0.055
Identities = 57/73 (78%)
Strand = Plus / Minus
Query: 67 ccatgtctttcaccggcncgcngnacaagtgcacnnnntgcgacaagnnnnnncacttca 126
||||||| ||||||||| ||| | ||||||||| ||||||||| || ||||
Sbjct: 25759547 ccatgtcgttcaccggcacgcaggacaagtgcaaggcgtgcgacaagaccgtccatttca 25759488
Query: 127 tcgacctcctcac 139
|||||||||||||
Sbjct: 25759487 tcgacctcctcac 25759475
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 152,501
Number of Sequences: 438736
Number of extensions: 152501
Number of successful extensions: 2188
Number of sequences better than 0.5: 18
Number of HSP's better than 0.5 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2117
Number of HSP's gapped (non-prelim): 62
length of query: 393
length of database: 2,800,419,916
effective HSP length: 20
effective length of query: 373
effective length of database: 2,791,645,196
effective search space: 1041283658108
effective search space used: 1041283658108
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)