BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAZ4d09.yg.2.1
(542 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB659204.1|CB659204 OSJNEc15P22.f OSJNEc Oryza sativa (j... 230 6e-058
gb|CB660412.1|CB660412 OSJNEd02B23.f OSJNEd Oryza sativa (j... 230 6e-058
gb|CB660442.1|CB660442 OSJNEd02C23.f OSJNEd Oryza sativa (j... 230 6e-058
gb|CV731800.1|CV731800 FLO--05-P20.b1 Rice flower lambda ph... 230 6e-058
dbj|AK062163.1| Oryza sativa (japonica cultivar-group) cDNA... 230 6e-058
dbj|AK067578.1| Oryza sativa (japonica cultivar-group) cDNA... 230 6e-058
gb|CB669558.1|CB669558 OSJNEe02C07.r OSJNEe Oryza sativa (j... 214 4e-053
gb|CB684023.1|CB684023 OSJNEf13C11.f OSJNEf Oryza sativa (j... 192 1e-046
gb|CA758821.1|CA758821 BR030028000_PLATE_A05_33_035.ab1 OA ... 157 7e-036
gb|CB648385.1|CB648385 OSJNEb11L23.f OSJNEb Oryza sativa (j... 157 7e-036
gb|D49346.1|D49346 RICS16588A Rice green shoot Oryza sativa... 155 3e-035
gb|AC091735.3| Genomic sequence for Oryza sativa, Nipponbar... 127 7e-027
gb|AACV01021133.1| Oryza sativa (japonica cultivar-group) c... 127 7e-027
gb|AACV01021134.1| Oryza sativa (japonica cultivar-group) c... 127 7e-027
ref|NT_080063.1| Oryza sativa (japonica cultivar-group) chr... 127 7e-027
gb|CH401249.1| Oryza sativa (japonica cultivar-group) chrom... 127 7e-027
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 127 7e-027
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 127 7e-027
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 127 7e-027
gb|D24576.1|D24576 RICR2194A Rice root Oryza sativa (japoni... 123 1e-025
gb|AU164695.1|AU164695 AU164695 Rice root Oryza sativa (jap... 115 3e-023
ref|NM_195516.1| Oryza sativa (japonica cultivar-group) put... 105 2e-020
>gb|CB659204.1|CB659204 OSJNEc15P22.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc15P22 5', mRNA sequence
Length = 847
Score = 230 bits (116), Expect = 6e-058
Identities = 305/368 (82%)
Strand = Plus / Plus
Query: 52 gggacatggaggaaggtgatgccttacatggccatggtgtttcttcagttcggcttcgcc 111
|||| ||||||||||| ||||| |||||||| ||||| || || |||||||||||||||
Sbjct: 81 gggaaatggaggaaggccatgccatacatggcgatggtcttcctacagttcggcttcgcc 140
Query: 112 ggaatgttcctcatctccgtcgcgtccctgcggcagggaatgagccactatgtccttgtt 171
|| |||||||||||||||||||||| || ||||| || ||||||||||| || || ||
Sbjct: 141 gggctgttcctcatctccgtcgcgtcgctacggcaaggcatgagccactacgtgctcgtc 200
Query: 172 gtctaccggaacgtagtggcagccattgtcatggctccattcgcgctatggtttgagagg 231
|| |||||||| | || || ||| | |||||||| ||||||||||| ||||| ||||||
Sbjct: 201 gtataccggaatgccgtcgccgccgtcgtcatggcaccattcgcgctctggttcgagagg 260
Query: 232 aaaacaaggcctaaaatgagcctaccggtgttcatcaagatccttgctttgggattactc 291
||||||||||| ||||||| || | ||||| ||||||| | ||| ||||| |||||
Sbjct: 261 aaaacaaggcccaaaatgacgctttctgtgtttttcaagattatggctctgggactactc 320
Query: 292 gaacccgtgcttgaccaaaacttcatctacatgggagtgaatagcacatcagcaagcttc 351
|| || |||||||||||||||||| |||| ||||||| || | ||| || || ||||||
Sbjct: 321 gagcctgtgcttgaccaaaacttcttctatatgggagccaagaacacgtcggcgagcttc 380
Query: 352 tcctctgcgttaaccaacatattgccagctctaacttttgtaaatgccatcatactcagg 411
|| || || | ||||||||||| || ||| |||| |||||||||||||||||||| |||
Sbjct: 381 tcatcagcactcaccaacatattacctgctgtaacgtttgtaaatgccatcatactgagg 440
Query: 412 atggagag 419
||||||||
Sbjct: 441 atggagag 448
>gb|CB660412.1|CB660412 OSJNEd02B23.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd02B23 5', mRNA sequence
Length = 824
Score = 230 bits (116), Expect = 6e-058
Identities = 305/368 (82%)
Strand = Plus / Plus
Query: 52 gggacatggaggaaggtgatgccttacatggccatggtgtttcttcagttcggcttcgcc 111
|||| ||||||||||| ||||| |||||||| ||||| || || |||||||||||||||
Sbjct: 92 gggaaatggaggaaggccatgccatacatggcgatggtcttcctacagttcggcttcgcc 151
Query: 112 ggaatgttcctcatctccgtcgcgtccctgcggcagggaatgagccactatgtccttgtt 171
|| |||||||||||||||||||||| || ||||| || ||||||||||| || || ||
Sbjct: 152 gggctgttcctcatctccgtcgcgtcgctacggcaaggcatgagccactacgtgctcgtc 211
Query: 172 gtctaccggaacgtagtggcagccattgtcatggctccattcgcgctatggtttgagagg 231
|| |||||||| | || || ||| | |||||||| ||||||||||| ||||| ||||||
Sbjct: 212 gtataccggaatgccgtcgccgccgtcgtcatggcaccattcgcgctctggttcgagagg 271
Query: 232 aaaacaaggcctaaaatgagcctaccggtgttcatcaagatccttgctttgggattactc 291
||||||||||| ||||||| || | ||||| ||||||| | ||| ||||| |||||
Sbjct: 272 aaaacaaggcccaaaatgacgctttctgtgtttttcaagattatggctctgggactactc 331
Query: 292 gaacccgtgcttgaccaaaacttcatctacatgggagtgaatagcacatcagcaagcttc 351
|| || |||||||||||||||||| |||| ||||||| || | ||| || || ||||||
Sbjct: 332 gagcctgtgcttgaccaaaacttcttctatatgggagccaagaacacgtcggcgagcttc 391
Query: 352 tcctctgcgttaaccaacatattgccagctctaacttttgtaaatgccatcatactcagg 411
|| || || | ||||||||||| || ||| |||| |||||||||||||||||||| |||
Sbjct: 392 tcatcagcactcaccaacatattacctgctgtaacgtttgtaaatgccatcatactgagg 451
Query: 412 atggagag 419
||||||||
Sbjct: 452 atggagag 459
>gb|CB660442.1|CB660442 OSJNEd02C23.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd02C23 5', mRNA sequence
Length = 881
Score = 230 bits (116), Expect = 6e-058
Identities = 305/368 (82%)
Strand = Plus / Plus
Query: 52 gggacatggaggaaggtgatgccttacatggccatggtgtttcttcagttcggcttcgcc 111
|||| ||||||||||| ||||| |||||||| ||||| || || |||||||||||||||
Sbjct: 90 gggaaatggaggaaggccatgccatacatggcgatggtcttcctacagttcggcttcgcc 149
Query: 112 ggaatgttcctcatctccgtcgcgtccctgcggcagggaatgagccactatgtccttgtt 171
|| |||||||||||||||||||||| || ||||| || ||||||||||| || || ||
Sbjct: 150 gggctgttcctcatctccgtcgcgtcgctacggcaaggcatgagccactacgtgctcgtc 209
Query: 172 gtctaccggaacgtagtggcagccattgtcatggctccattcgcgctatggtttgagagg 231
|| |||||||| | || || ||| | |||||||| ||||||||||| ||||| ||||||
Sbjct: 210 gtataccggaatgccgtcgccgccgtcgtcatggcaccattcgcgctctggttcgagagg 269
Query: 232 aaaacaaggcctaaaatgagcctaccggtgttcatcaagatccttgctttgggattactc 291
||||||||||| ||||||| || | ||||| ||||||| | ||| ||||| |||||
Sbjct: 270 aaaacaaggcccaaaatgacgctttctgtgtttttcaagattatggctctgggactactc 329
Query: 292 gaacccgtgcttgaccaaaacttcatctacatgggagtgaatagcacatcagcaagcttc 351
|| || |||||||||||||||||| |||| ||||||| || | ||| || || ||||||
Sbjct: 330 gagcctgtgcttgaccaaaacttcttctatatgggagccaagaacacgtcggcgagcttc 389
Query: 352 tcctctgcgttaaccaacatattgccagctctaacttttgtaaatgccatcatactcagg 411
|| || || | ||||||||||| || ||| |||| |||||||||||||||||||| |||
Sbjct: 390 tcatcagcactcaccaacatattacctgctgtaacgtttgtaaatgccatcatactgagg 449
Query: 412 atggagag 419
||||||||
Sbjct: 450 atggagag 457
>gb|CV731800.1|CV731800 FLO--05-P20.b1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--05-P20,
mRNA sequence
Length = 527
Score = 230 bits (116), Expect = 6e-058
Identities = 305/368 (82%)
Strand = Plus / Plus
Query: 52 gggacatggaggaaggtgatgccttacatggccatggtgtttcttcagttcggcttcgcc 111
|||| ||||||||||| ||||| |||||||| ||||| || || |||||||||||||||
Sbjct: 152 gggaaatggaggaaggccatgccatacatggcgatggtcttcctacagttcggcttcgcc 211
Query: 112 ggaatgttcctcatctccgtcgcgtccctgcggcagggaatgagccactatgtccttgtt 171
|| |||||||||||||||||||||| || ||||| || ||||||||||| || || ||
Sbjct: 212 gggctgttcctcatctccgtcgcgtcgctacggcaaggcatgagccactacgtgctcgtc 271
Query: 172 gtctaccggaacgtagtggcagccattgtcatggctccattcgcgctatggtttgagagg 231
|| |||||||| | || || ||| | |||||||| ||||||||||| ||||| ||||||
Sbjct: 272 gtataccggaatgccgtcgccgccgtcgtcatggcaccattcgcgctctggttcgagagg 331
Query: 232 aaaacaaggcctaaaatgagcctaccggtgttcatcaagatccttgctttgggattactc 291
||||||||||| ||||||| || | ||||| ||||||| | ||| ||||| |||||
Sbjct: 332 aaaacaaggcccaaaatgacgctttctgtgtttttcaagattatggctctgggactactc 391
Query: 292 gaacccgtgcttgaccaaaacttcatctacatgggagtgaatagcacatcagcaagcttc 351
|| || |||||||||||||||||| |||| ||||||| || | ||| || || ||||||
Sbjct: 392 gagcctgtgcttgaccaaaacttcttctatatgggagccaagaacacgtcggcgagcttc 451
Query: 352 tcctctgcgttaaccaacatattgccagctctaacttttgtaaatgccatcatactcagg 411
|| || || | ||||||||||| || ||| |||| |||||||||||||||||||| |||
Sbjct: 452 tcatcagcactcaccaacatattacctgctgtaacgtttgtaaatgccatcatactgagg 511
Query: 412 atggagag 419
||||||||
Sbjct: 512 atggagag 519
>dbj|AK062163.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-B04, full
insert sequence
Length = 1342
Score = 230 bits (116), Expect = 6e-058
Identities = 305/368 (82%)
Strand = Plus / Plus
Query: 52 gggacatggaggaaggtgatgccttacatggccatggtgtttcttcagttcggcttcgcc 111
|||| ||||||||||| ||||| |||||||| ||||| || || |||||||||||||||
Sbjct: 109 gggaaatggaggaaggccatgccatacatggcgatggtcttcctacagttcggcttcgcc 168
Query: 112 ggaatgttcctcatctccgtcgcgtccctgcggcagggaatgagccactatgtccttgtt 171
|| |||||||||||||||||||||| || ||||| || ||||||||||| || || ||
Sbjct: 169 gggctgttcctcatctccgtcgcgtcgctacggcaaggcatgagccactacgtgctcgtc 228
Query: 172 gtctaccggaacgtagtggcagccattgtcatggctccattcgcgctatggtttgagagg 231
|| |||||||| | || || ||| | |||||||| ||||||||||| ||||| ||||||
Sbjct: 229 gtataccggaatgccgtcgccgccgtcgtcatggcaccattcgcgctctggttcgagagg 288
Query: 232 aaaacaaggcctaaaatgagcctaccggtgttcatcaagatccttgctttgggattactc 291
||||||||||| ||||||| || | ||||| ||||||| | ||| ||||| |||||
Sbjct: 289 aaaacaaggcccaaaatgacgctttctgtgtttttcaagattatggctctgggactactc 348
Query: 292 gaacccgtgcttgaccaaaacttcatctacatgggagtgaatagcacatcagcaagcttc 351
|| || |||||||||||||||||| |||| ||||||| || | ||| || || ||||||
Sbjct: 349 gagcctgtgcttgaccaaaacttcttctatatgggagccaagaacacgtcggcgagcttc 408
Query: 352 tcctctgcgttaaccaacatattgccagctctaacttttgtaaatgccatcatactcagg 411
|| || || | ||||||||||| || ||| |||| |||||||||||||||||||| |||
Sbjct: 409 tcatcagcactcaccaacatattacctgctgtaacgtttgtaaatgccatcatactgagg 468
Query: 412 atggagag 419
||||||||
Sbjct: 469 atggagag 476
>dbj|AK067578.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013110M15, full
insert sequence
Length = 2869
Score = 230 bits (116), Expect = 6e-058
Identities = 305/368 (82%)
Strand = Plus / Plus
Query: 52 gggacatggaggaaggtgatgccttacatggccatggtgtttcttcagttcggcttcgcc 111
|||| ||||||||||| ||||| |||||||| ||||| || || |||||||||||||||
Sbjct: 96 gggaaatggaggaaggccatgccatacatggcgatggtcttcctacagttcggcttcgcc 155
Query: 112 ggaatgttcctcatctccgtcgcgtccctgcggcagggaatgagccactatgtccttgtt 171
|| |||||||||||||||||||||| || ||||| || ||||||||||| || || ||
Sbjct: 156 gggctgttcctcatctccgtcgcgtcgctacggcaaggcatgagccactacgtgctcgtc 215
Query: 172 gtctaccggaacgtagtggcagccattgtcatggctccattcgcgctatggtttgagagg 231
|| |||||||| | || || ||| | |||||||| ||||||||||| ||||| ||||||
Sbjct: 216 gtataccggaatgccgtcgccgccgtcgtcatggcaccattcgcgctctggttcgagagg 275
Query: 232 aaaacaaggcctaaaatgagcctaccggtgttcatcaagatccttgctttgggattactc 291
||||||||||| ||||||| || | ||||| ||||||| | ||| ||||| |||||
Sbjct: 276 aaaacaaggcccaaaatgacgctttctgtgtttttcaagattatggctctgggactactc 335
Query: 292 gaacccgtgcttgaccaaaacttcatctacatgggagtgaatagcacatcagcaagcttc 351
|| || |||||||||||||||||| |||| ||||||| || | ||| || || ||||||
Sbjct: 336 gagcctgtgcttgaccaaaacttcttctatatgggagccaagaacacgtcggcgagcttc 395
Query: 352 tcctctgcgttaaccaacatattgccagctctaacttttgtaaatgccatcatactcagg 411
|| || || | ||||||||||| || ||| |||| |||||||||||||||||||| |||
Sbjct: 396 tcatcagcactcaccaacatattacctgctgtaacgtttgtaaatgccatcatactgagg 455
Query: 412 atggagag 419
||||||||
Sbjct: 456 atggagag 463
>gb|CB669558.1|CB669558 OSJNEe02C07.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe02C07 3', mRNA sequence
Length = 787
Score = 214 bits (108), Expect = 4e-053
Identities = 294/356 (82%)
Strand = Plus / Plus
Query: 52 gggacatggaggaaggtgatgccttacatggccatggtgtttcttcagttcggcttcgcc 111
|||| ||||||||||| ||||| |||||||| ||||| || || |||||||||||||||
Sbjct: 81 gggaaatggaggaaggccatgccatacatggcgatggtcttcctacagttcggcttcgcc 140
Query: 112 ggaatgttcctcatctccgtcgcgtccctgcggcagggaatgagccactatgtccttgtt 171
|| |||||||||||||||||||||| || ||||| || ||||||||||| || || ||
Sbjct: 141 gggctgttcctcatctccgtcgcgtcgctacggcaaggcatgagccactacgtgctcgtc 200
Query: 172 gtctaccggaacgtagtggcagccattgtcatggctccattcgcgctatggtttgagagg 231
|| |||||||| | || || ||| | |||||||| ||||||||||| ||||| ||||||
Sbjct: 201 gtataccggaatgccgtcgccgccgtcgtcatggcaccattcgcgctctggttcgagagg 260
Query: 232 aaaacaaggcctaaaatgagcctaccggtgttcatcaagatccttgctttgggattactc 291
||||||||||| ||||||| || | ||||| ||||||| | ||| ||||| |||||
Sbjct: 261 aaaacaaggcccaaaatgacgctttctgtgtttttcaagattatggctctgggactactc 320
Query: 292 gaacccgtgcttgaccaaaacttcatctacatgggagtgaatagcacatcagcaagcttc 351
|| || |||||||||||||||||| |||| ||||||| || | ||| || || ||||||
Sbjct: 321 gagcctgtgcttgaccaaaacttcttctatatgggagccaagaacacgtcggcgagcttc 380
Query: 352 tcctctgcgttaaccaacatattgccagctctaacttttgtaaatgccatcatact 407
|| || || | ||||||||||| || ||| |||| ||||||||||||||||||||
Sbjct: 381 tcatcagcactcaccaacatattacctgctgtaacgtttgtaaatgccatcatact 436
>gb|CB684023.1|CB684023 OSJNEf13C11.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf13C11 5', mRNA sequence
Length = 742
Score = 192 bits (97), Expect = 1e-046
Identities = 302/369 (81%), Gaps = 1/369 (0%)
Strand = Plus / Plus
Query: 52 gggacatggaggaaggtgatgccttacatggccatggtgtttcttcagttcggcttcgcc 111
|||| ||||||||||| ||||| |||||||| ||||| || || |||||||||||||||
Sbjct: 89 gggaaatggaggaaggccatgccatacatggcgatggtcttcctacagttcggcttcgcc 148
Query: 112 ggaatgttcctcatctccgtcgcgtccctgcggcagggaatgagccactatgtccttgtt 171
|| |||||||||||||||||||||| || ||||| || ||||||||||| || || ||
Sbjct: 149 gggctgttcctcatctccgtcgcgtcgctacggcaaggcatgagccactacgtgctcgtc 208
Query: 172 gtctaccggaacgtagtggcagccattgtcatggctccattcgcgctatggtttgagagg 231
|| |||||||| | || || ||| | |||||||| ||||||||||| ||||| ||||||
Sbjct: 209 gtataccggaatgccgtcgccgccgtcgtcatggcaccattcgcgctctggttcgagagg 268
Query: 232 aaaacaaggcctaaaatgagcctaccggtgttcatcaagatccttgctttgggattactc 291
||||| ||||| | ||||| || | ||||| ||||||| | ||| ||||| |||||
Sbjct: 269 aaaactaggcccagaatgacgctttctgtgtttttcaagattatggctctgggactactc 328
Query: 292 gaacccgtgcttgaccaaa-acttcatctacatgggagtgaatagcacatcagcaagctt 350
|| || ||||||||||||| ||||| |||| ||||||| || | ||| || || |||||
Sbjct: 329 gagcctgtgcttgaccaaagacttcttctatatgggagccaagaacacgtcggcgagctt 388
Query: 351 ctcctctgcgttaaccaacatattgccagctctaacttttgtaaatgccatcatactcag 410
||| || | | ||||||||||| || ||| |||| |||||||||||||||||||| ||
Sbjct: 389 ctcatcatcactcaccaacatattacctgctgtaacgtttgtaaatgccatcatactgag 448
Query: 411 gatggagag 419
|||||||||
Sbjct: 449 gatggagag 457
>gb|CA758821.1|CA758821 BR030028000_PLATE_A05_33_035.ab1 OA Oryza sativa (japonica
cultivar-group) cDNA clone
BR030028000_PLATE_A05_33_035.ab1 similar to NP_192569.1|
(NM_116898) nodulin-like protein [Arabidopsis thaliana]
gi|7486869|pir|T10556 hypothetical protein T12G13.130 -
Arabidopsis thaliana gi|5262202|emb|CAB45799.1|..., mRNA
sequence
Length = 397
Score = 157 bits (79), Expect = 7e-036
Identities = 169/199 (84%)
Strand = Plus / Plus
Query: 52 gggacatggaggaaggtgatgccttacatggccatggtgtttcttcagttcggcttcgcc 111
|||| ||||||||||| ||||| |||||||| ||||| || || |||||||||||||||
Sbjct: 92 gggaaatggaggaaggccatgccatacatggcgatggtcttcctacagttcggcttcgcc 151
Query: 112 ggaatgttcctcatctccgtcgcgtccctgcggcagggaatgagccactatgtccttgtt 171
|| |||||||||||||||||||||| || ||||| || ||||||||||| || || ||
Sbjct: 152 gggctgttcctcatctccgtcgcgtcgctacggcaaggcatgagccactacgtgctcgtc 211
Query: 172 gtctaccggaacgtagtggcagccattgtcatggctccattcgcgctatggtttgagagg 231
|| |||||||| | || || ||| | |||||||| ||||||||||| ||||| ||||||
Sbjct: 212 gtataccggaatgccgtcgccgccgtcgtcatggcaccattcgcgctctggttcgagagg 271
Query: 232 aaaacaaggcctaaaatga 250
||||||||||| |||||||
Sbjct: 272 aaaacaaggcccaaaatga 290
>gb|CB648385.1|CB648385 OSJNEb11L23.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb11L23 5', mRNA sequence
Length = 826
Score = 157 bits (79), Expect = 7e-036
Identities = 169/199 (84%)
Strand = Plus / Plus
Query: 52 gggacatggaggaaggtgatgccttacatggccatggtgtttcttcagttcggcttcgcc 111
|||| ||||||||||| ||||| |||||||| ||||| || || |||||||||||||||
Sbjct: 94 gggaaatggaggaaggccatgccatacatggcgatggtcttcctacagttcggcttcgcc 153
Query: 112 ggaatgttcctcatctccgtcgcgtccctgcggcagggaatgagccactatgtccttgtt 171
|| |||||||||||||||||||||| || ||||| || ||||||||||| || || ||
Sbjct: 154 gggctgttcctcatctccgtcgcgtcgctacggcaaggcatgagccactacgtgctcgtc 213
Query: 172 gtctaccggaacgtagtggcagccattgtcatggctccattcgcgctatggtttgagagg 231
|| |||||||| | || || ||| | |||||||| ||||||||||| ||||| ||||||
Sbjct: 214 gtataccggaatgccgtcgccgccgtcgtcatggcaccattcgcgctctggttcgagagg 273
Query: 232 aaaacaaggcctaaaatga 250
||||||||||| |||||||
Sbjct: 274 aaaacaaggcccaaaatga 292
Score = 91.7 bits (46), Expect = 4e-016
Identities = 103/122 (84%)
Strand = Plus / Plus
Query: 298 gtgcttgaccaaaacttcatctacatgggagtgaatagcacatcagcaagcttctcctct 357
|||||||||||||||||| |||| ||||||| || | ||| || || |||||||| ||
Sbjct: 420 gtgcttgaccaaaacttcttctatatgggagccaagaacacgtcggcgagcttctcatca 479
Query: 358 gcgttaaccaacatattgccagctctaacttttgtaaatgccatcatactcaggatggag 417
|| | ||||||||||| || ||| |||| |||||||||||||||||||| |||||||||
Sbjct: 480 gcactcaccaacatattacctgctgtaacgtttgtaaatgccatcatactgaggatggag 539
Query: 418 ag 419
||
Sbjct: 540 ag 541
>gb|D49346.1|D49346 RICS16588A Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA, mRNA sequence
Length = 405
Score = 155 bits (78), Expect = 3e-035
Identities = 226/277 (81%)
Strand = Plus / Plus
Query: 52 gggacatggaggaaggtgatgccttacatggccatggtgtttcttcagttcggcttcgcc 111
|||| |||| |||||| ||||| |||||||| ||||| || || ||||||||||||||
Sbjct: 95 gggaaatgggggaaggccatgccatacatggcgatggtcttcctacagttcggcttcgcn 154
Query: 112 ggaatgttcctcatctccgtcgcgtccctgcggcagggaatgagccactatgtccttgtt 171
|| |||||||||||||||||||||| || ||||| || ||||||||||| || || ||
Sbjct: 155 gggctgttcctcatctccgtcgcgtcgctacggcaaggcatgagccactacgtgctcgtn 214
Query: 172 gtctaccggaacgtagtggcagccattgtcatggctccattcgcgctatggtttgagagg 231
|| |||||||| | || || ||| | |||||||| ||||||||||| ||||| ||||||
Sbjct: 215 gtataccggaatgccgtcgccgccgtcgtcatggcaccattcgcgctctggttcgagagg 274
Query: 232 aaaacaaggcctaaaatgagcctaccggtgttcatcaagatccttgctttgggattactc 291
||||||||||| ||||| | || | ||||| ||||||| | | | ||||| |||||
Sbjct: 275 aaaacaaggcccaaaatnacgctttctgtgtttttcaagattatggntctgggactactc 334
Query: 292 gaacccgtgcttgaccaaaacttcatctacatgggag 328
|| || |||||| ||||||||||| |||| |||||||
Sbjct: 335 gagcctgtgcttnaccaaaacttcttctatatgggag 371
>gb|AC091735.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone
OSJNBa0082N11, from chromosome 10, complete sequence
Length = 183345
Score = 127 bits (64), Expect = 7e-027
Identities = 151/180 (83%)
Strand = Plus / Minus
Query: 52 gggacatggaggaaggtgatgccttacatggccatggtgtttcttcagttcggcttcgcc 111
|||| ||||||||||| ||||| |||||||| ||||| || || |||||||||||||||
Sbjct: 62189 gggaaatggaggaaggccatgccatacatggcgatggtcttcctacagttcggcttcgcc 62130
Query: 112 ggaatgttcctcatctccgtcgcgtccctgcggcagggaatgagccactatgtccttgtt 171
|| |||||||||||||||||||||| || ||||| || ||||||||||| || || ||
Sbjct: 62129 gggctgttcctcatctccgtcgcgtcgctacggcaaggcatgagccactacgtgctcgtc 62070
Query: 172 gtctaccggaacgtagtggcagccattgtcatggctccattcgcgctatggtttgagagg 231
|| |||||||| | || || ||| | |||||||| ||||||||||| ||||| ||||||
Sbjct: 62069 gtataccggaatgccgtcgccgccgtcgtcatggcaccattcgcgctctggttcgagagg 62010
Score = 75.8 bits (38), Expect = 2e-011
Identities = 92/110 (83%)
Strand = Plus / Minus
Query: 298 gtgcttgaccaaaacttcatctacatgggagtgaatagcacatcagcaagcttctcctct 357
|||||||||||||||||| |||| ||||||| || | ||| || || |||||||| ||
Sbjct: 60536 gtgcttgaccaaaacttcttctatatgggagccaagaacacgtcggcgagcttctcatca 60477
Query: 358 gcgttaaccaacatattgccagctctaacttttgtaaatgccatcatact 407
|| | ||||||||||| || ||| |||| ||||||||||||||||||||
Sbjct: 60476 gcactcaccaacatattacctgctgtaacgtttgtaaatgccatcatact 60427
>gb|AACV01021133.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg021133,
whole genome shotgun sequence
Length = 4987
Score = 127 bits (64), Expect = 7e-027
Identities = 151/180 (83%)
Strand = Plus / Plus
Query: 52 gggacatggaggaaggtgatgccttacatggccatggtgtttcttcagttcggcttcgcc 111
|||| ||||||||||| ||||| |||||||| ||||| || || |||||||||||||||
Sbjct: 723 gggaaatggaggaaggccatgccatacatggcgatggtcttcctacagttcggcttcgcc 782
Query: 112 ggaatgttcctcatctccgtcgcgtccctgcggcagggaatgagccactatgtccttgtt 171
|| |||||||||||||||||||||| || ||||| || ||||||||||| || || ||
Sbjct: 783 gggctgttcctcatctccgtcgcgtcgctacggcaaggcatgagccactacgtgctcgtc 842
Query: 172 gtctaccggaacgtagtggcagccattgtcatggctccattcgcgctatggtttgagagg 231
|| |||||||| | || || ||| | |||||||| ||||||||||| ||||| ||||||
Sbjct: 843 gtataccggaatgccgtcgccgccgtcgtcatggcaccattcgcgctctggttcgagagg 902
Score = 75.8 bits (38), Expect = 2e-011
Identities = 92/110 (83%)
Strand = Plus / Plus
Query: 298 gtgcttgaccaaaacttcatctacatgggagtgaatagcacatcagcaagcttctcctct 357
|||||||||||||||||| |||| ||||||| || | ||| || || |||||||| ||
Sbjct: 2376 gtgcttgaccaaaacttcttctatatgggagccaagaacacgtcggcgagcttctcatca 2435
Query: 358 gcgttaaccaacatattgccagctctaacttttgtaaatgccatcatact 407
|| | ||||||||||| || ||| |||| ||||||||||||||||||||
Sbjct: 2436 gcactcaccaacatattacctgctgtaacgtttgtaaatgccatcatact 2485
>gb|AACV01021134.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg021134, whole
genome shotgun sequence
Length = 2044
Score = 127 bits (64), Expect = 7e-027
Identities = 151/180 (83%)
Strand = Plus / Plus
Query: 52 gggacatggaggaaggtgatgccttacatggccatggtgtttcttcagttcggcttcgcc 111
|||| ||||||||||| ||||| |||||||| ||||| || || |||||||||||||||
Sbjct: 1723 gggaaatggaggaaggccatgccatacatggcgatggtcttcctacagttcggcttcgcc 1782
Query: 112 ggaatgttcctcatctccgtcgcgtccctgcggcagggaatgagccactatgtccttgtt 171
|| |||||||||||||||||||||| || ||||| || ||||||||||| || || ||
Sbjct: 1783 gggctgttcctcatctccgtcgcgtcgctacggcaaggcatgagccactacgtgctcgtc 1842
Query: 172 gtctaccggaacgtagtggcagccattgtcatggctccattcgcgctatggtttgagagg 231
|| |||||||| | || || ||| | |||||||| ||||||||||| ||||| ||||||
Sbjct: 1843 gtataccggaatgccgtcgccgccgtcgtcatggcaccattcgcgctctggttcgagagg 1902
>ref|NT_080063.1| Oryza sativa (japonica cultivar-group) chromosome 10
Length = 327885
Score = 127 bits (64), Expect = 7e-027
Identities = 151/180 (83%)
Strand = Plus / Minus
Query: 52 gggacatggaggaaggtgatgccttacatggccatggtgtttcttcagttcggcttcgcc 111
|||| ||||||||||| ||||| |||||||| ||||| || || |||||||||||||||
Sbjct: 62189 gggaaatggaggaaggccatgccatacatggcgatggtcttcctacagttcggcttcgcc 62130
Query: 112 ggaatgttcctcatctccgtcgcgtccctgcggcagggaatgagccactatgtccttgtt 171
|| |||||||||||||||||||||| || ||||| || ||||||||||| || || ||
Sbjct: 62129 gggctgttcctcatctccgtcgcgtcgctacggcaaggcatgagccactacgtgctcgtc 62070
Query: 172 gtctaccggaacgtagtggcagccattgtcatggctccattcgcgctatggtttgagagg 231
|| |||||||| | || || ||| | |||||||| ||||||||||| ||||| ||||||
Sbjct: 62069 gtataccggaatgccgtcgccgccgtcgtcatggcaccattcgcgctctggttcgagagg 62010
Score = 75.8 bits (38), Expect = 2e-011
Identities = 92/110 (83%)
Strand = Plus / Minus
Query: 298 gtgcttgaccaaaacttcatctacatgggagtgaatagcacatcagcaagcttctcctct 357
|||||||||||||||||| |||| ||||||| || | ||| || || |||||||| ||
Sbjct: 60536 gtgcttgaccaaaacttcttctatatgggagccaagaacacgtcggcgagcttctcatca 60477
Query: 358 gcgttaaccaacatattgccagctctaacttttgtaaatgccatcatact 407
|| | ||||||||||| || ||| |||| ||||||||||||||||||||
Sbjct: 60476 gcactcaccaacatattacctgctgtaacgtttgtaaatgccatcatact 60427
>gb|CH401249.1| Oryza sativa (japonica cultivar-group) chromosome 10 scaffold000086
genomic scaffold, whole genome shotgun sequence
Length = 175116
Score = 127 bits (64), Expect = 7e-027
Identities = 151/180 (83%)
Strand = Plus / Minus
Query: 52 gggacatggaggaaggtgatgccttacatggccatggtgtttcttcagttcggcttcgcc 111
|||| ||||||||||| ||||| |||||||| ||||| || || |||||||||||||||
Sbjct: 28985 gggaaatggaggaaggccatgccatacatggcgatggtcttcctacagttcggcttcgcc 28926
Query: 112 ggaatgttcctcatctccgtcgcgtccctgcggcagggaatgagccactatgtccttgtt 171
|| |||||||||||||||||||||| || ||||| || ||||||||||| || || ||
Sbjct: 28925 gggctgttcctcatctccgtcgcgtcgctacggcaaggcatgagccactacgtgctcgtc 28866
Query: 172 gtctaccggaacgtagtggcagccattgtcatggctccattcgcgctatggtttgagagg 231
|| |||||||| | || || ||| | |||||||| ||||||||||| ||||| ||||||
Sbjct: 28865 gtataccggaatgccgtcgccgccgtcgtcatggcaccattcgcgctctggttcgagagg 28806
Score = 127 bits (64), Expect = 7e-027
Identities = 151/180 (83%)
Strand = Plus / Minus
Query: 52 gggacatggaggaaggtgatgccttacatggccatggtgtttcttcagttcggcttcgcc 111
|||| ||||||||||| ||||| |||||||| ||||| || || |||||||||||||||
Sbjct: 27891 gggaaatggaggaaggccatgccatacatggcgatggtcttcctacagttcggcttcgcc 27832
Query: 112 ggaatgttcctcatctccgtcgcgtccctgcggcagggaatgagccactatgtccttgtt 171
|| |||||||||||||||||||||| || ||||| || ||||||||||| || || ||
Sbjct: 27831 gggctgttcctcatctccgtcgcgtcgctacggcaaggcatgagccactacgtgctcgtc 27772
Query: 172 gtctaccggaacgtagtggcagccattgtcatggctccattcgcgctatggtttgagagg 231
|| |||||||| | || || ||| | |||||||| ||||||||||| ||||| ||||||
Sbjct: 27771 gtataccggaatgccgtcgccgccgtcgtcatggcaccattcgcgctctggttcgagagg 27712
Score = 75.8 bits (38), Expect = 2e-011
Identities = 92/110 (83%)
Strand = Plus / Minus
Query: 298 gtgcttgaccaaaacttcatctacatgggagtgaatagcacatcagcaagcttctcctct 357
|||||||||||||||||| |||| ||||||| || | ||| || || |||||||| ||
Sbjct: 26238 gtgcttgaccaaaacttcttctatatgggagccaagaacacgtcggcgagcttctcatca 26179
Query: 358 gcgttaaccaacatattgccagctctaacttttgtaaatgccatcatact 407
|| | ||||||||||| || ||| |||| ||||||||||||||||||||
Sbjct: 26178 gcactcaccaacatattacctgctgtaacgtttgtaaatgccatcatact 26129
>gb|CM000147.1| Oryza sativa (japonica cultivar-group) chromosome 10, whole genome shotgun
sequence
Length = 21480893
Score = 127 bits (64), Expect = 7e-027
Identities = 151/180 (83%)
Strand = Plus / Minus
Query: 52 gggacatggaggaaggtgatgccttacatggccatggtgtttcttcagttcggcttcgcc 111
|||| ||||||||||| ||||| |||||||| ||||| || || |||||||||||||||
Sbjct: 7103167 gggaaatggaggaaggccatgccatacatggcgatggtcttcctacagttcggcttcgcc 7103108
Query: 112 ggaatgttcctcatctccgtcgcgtccctgcggcagggaatgagccactatgtccttgtt 171
|| |||||||||||||||||||||| || ||||| || ||||||||||| || || ||
Sbjct: 7103107 gggctgttcctcatctccgtcgcgtcgctacggcaaggcatgagccactacgtgctcgtc 7103048
Query: 172 gtctaccggaacgtagtggcagccattgtcatggctccattcgcgctatggtttgagagg 231
|| |||||||| | || || ||| | |||||||| ||||||||||| ||||| ||||||
Sbjct: 7103047 gtataccggaatgccgtcgccgccgtcgtcatggcaccattcgcgctctggttcgagagg 7102988
Score = 127 bits (64), Expect = 7e-027
Identities = 151/180 (83%)
Strand = Plus / Minus
Query: 52 gggacatggaggaaggtgatgccttacatggccatggtgtttcttcagttcggcttcgcc 111
|||| ||||||||||| ||||| |||||||| ||||| || || |||||||||||||||
Sbjct: 7102073 gggaaatggaggaaggccatgccatacatggcgatggtcttcctacagttcggcttcgcc 7102014
Query: 112 ggaatgttcctcatctccgtcgcgtccctgcggcagggaatgagccactatgtccttgtt 171
|| |||||||||||||||||||||| || ||||| || ||||||||||| || || ||
Sbjct: 7102013 gggctgttcctcatctccgtcgcgtcgctacggcaaggcatgagccactacgtgctcgtc 7101954
Query: 172 gtctaccggaacgtagtggcagccattgtcatggctccattcgcgctatggtttgagagg 231
|| |||||||| | || || ||| | |||||||| ||||||||||| ||||| ||||||
Sbjct: 7101953 gtataccggaatgccgtcgccgccgtcgtcatggcaccattcgcgctctggttcgagagg 7101894
Score = 75.8 bits (38), Expect = 2e-011
Identities = 92/110 (83%)
Strand = Plus / Minus
Query: 298 gtgcttgaccaaaacttcatctacatgggagtgaatagcacatcagcaagcttctcctct 357
|||||||||||||||||| |||| ||||||| || | ||| || || |||||||| ||
Sbjct: 7100420 gtgcttgaccaaaacttcttctatatgggagccaagaacacgtcggcgagcttctcatca 7100361
Query: 358 gcgttaaccaacatattgccagctctaacttttgtaaatgccatcatact 407
|| | ||||||||||| || ||| |||| ||||||||||||||||||||
Sbjct: 7100360 gcactcaccaacatattacctgctgtaacgtttgtaaatgccatcatact 7100311
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
sequence
Length = 22685906
Score = 127 bits (64), Expect = 7e-027
Identities = 151/180 (83%)
Strand = Plus / Minus
Query: 52 gggacatggaggaaggtgatgccttacatggccatggtgtttcttcagttcggcttcgcc 111
|||| ||||||||||| ||||| |||||||| ||||| || || |||||||||||||||
Sbjct: 7428325 gggaaatggaggaaggccatgccatacatggcgatggtcttcctacagttcggcttcgcc 7428266
Query: 112 ggaatgttcctcatctccgtcgcgtccctgcggcagggaatgagccactatgtccttgtt 171
|| |||||||||||||||||||||| || ||||| || ||||||||||| || || ||
Sbjct: 7428265 gggctgttcctcatctccgtcgcgtcgctacggcaaggcatgagccactacgtgctcgtc 7428206
Query: 172 gtctaccggaacgtagtggcagccattgtcatggctccattcgcgctatggtttgagagg 231
|| |||||||| | || || ||| | |||||||| ||||||||||| ||||| ||||||
Sbjct: 7428205 gtataccggaatgccgtcgccgccgtcgtcatggcaccattcgcgctctggttcgagagg 7428146
Score = 75.8 bits (38), Expect = 2e-011
Identities = 92/110 (83%)
Strand = Plus / Minus
Query: 298 gtgcttgaccaaaacttcatctacatgggagtgaatagcacatcagcaagcttctcctct 357
|||||||||||||||||| |||| ||||||| || | ||| || || |||||||| ||
Sbjct: 7426672 gtgcttgaccaaaacttcttctatatgggagccaagaacacgtcggcgagcttctcatca 7426613
Query: 358 gcgttaaccaacatattgccagctctaacttttgtaaatgccatcatact 407
|| | ||||||||||| || ||| |||| ||||||||||||||||||||
Sbjct: 7426612 gcactcaccaacatattacctgctgtaacgtttgtaaatgccatcatact 7426563
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
Length = 22698374
Score = 127 bits (64), Expect = 7e-027
Identities = 151/180 (83%)
Strand = Plus / Minus
Query: 52 gggacatggaggaaggtgatgccttacatggccatggtgtttcttcagttcggcttcgcc 111
|||| ||||||||||| ||||| |||||||| ||||| || || |||||||||||||||
Sbjct: 7432524 gggaaatggaggaaggccatgccatacatggcgatggtcttcctacagttcggcttcgcc 7432465
Query: 112 ggaatgttcctcatctccgtcgcgtccctgcggcagggaatgagccactatgtccttgtt 171
|| |||||||||||||||||||||| || ||||| || ||||||||||| || || ||
Sbjct: 7432464 gggctgttcctcatctccgtcgcgtcgctacggcaaggcatgagccactacgtgctcgtc 7432405
Query: 172 gtctaccggaacgtagtggcagccattgtcatggctccattcgcgctatggtttgagagg 231
|| |||||||| | || || ||| | |||||||| ||||||||||| ||||| ||||||
Sbjct: 7432404 gtataccggaatgccgtcgccgccgtcgtcatggcaccattcgcgctctggttcgagagg 7432345
Score = 75.8 bits (38), Expect = 2e-011
Identities = 92/110 (83%)
Strand = Plus / Minus
Query: 298 gtgcttgaccaaaacttcatctacatgggagtgaatagcacatcagcaagcttctcctct 357
|||||||||||||||||| |||| ||||||| || | ||| || || |||||||| ||
Sbjct: 7430871 gtgcttgaccaaaacttcttctatatgggagccaagaacacgtcggcgagcttctcatca 7430812
Query: 358 gcgttaaccaacatattgccagctctaacttttgtaaatgccatcatact 407
|| | ||||||||||| || ||| |||| ||||||||||||||||||||
Sbjct: 7430811 gcactcaccaacatattacctgctgtaacgtttgtaaatgccatcatact 7430762
>gb|D24576.1|D24576 RICR2194A Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R2194_1A, mRNA sequence
Length = 309
Score = 123 bits (62), Expect = 1e-025
Identities = 165/199 (82%), Gaps = 2/199 (1%)
Strand = Plus / Plus
Query: 52 gggacatggaggaaggtgatgccttacatggccatggtgtttcttcagttcggcttcgcc 111
|||| |||| |||||| ||||| |||||||| ||||| || || ||||||||||||||
Sbjct: 98 gggaaatggnggaaggccatgccatacatggcgatggtcttcctacagttcggcttcgcg 157
Query: 112 ggaatgttcctcatctccgtcgcgtccctgcggcagggaatgagccactatgtccttgtt 171
| |||||||||||||||||||||| || ||||| || ||||||||||| || || ||
Sbjct: 158 gc--tgttcctcatctccgtcgcgtcgctacggcaaggcatgagccactacgtgctcgtc 215
Query: 172 gtctaccggaacgtagtggcagccattgtcatggctccattcgcgctatggtttgagagg 231
|| |||||||| | || || ||| | |||||||| ||||||||||| ||||| ||||||
Sbjct: 216 gtataccggaatgccgtcgccgccgtcgtcatggcaccattcgcgctctggttcgagagg 275
Query: 232 aaaacaaggcctaaaatga 250
||||||||||| ||| |||
Sbjct: 276 aaaacaaggcccaaantga 294
>gb|AU164695.1|AU164695 AU164695 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R3817, mRNA sequence
Length = 335
Score = 115 bits (58), Expect = 3e-023
Identities = 158/191 (82%), Gaps = 1/191 (0%)
Strand = Plus / Plus
Query: 52 gggacatggaggaaggtgatgccttacatggccatggtgtttcttcagttcggcttcgcc 111
|||| ||||||||||| ||||| |||||||| ||||| || || ||||||||||||||
Sbjct: 98 gggaaatggaggaaggccatgccatacatggcgatggtcttcctacagttcggcttcgcg 157
Query: 112 ggaatgttcctcatctccgtcgcgtccctgcggcagggaatgagccactatgtccttgtt 171
|| |||||||||||||||||||||| || ||||| || |||||| |||| || || ||
Sbjct: 158 ggc-tgttcctcatctccgtcgcgtcgctacggcaaggcatgagcnactacgtgctcgtc 216
Query: 172 gtctaccggaacgtagtggcagccattgtcatggctccattcgcgctatggtttgagagg 231
|| |||||||| | || || ||| | |||||||| ||||||||||| ||||| |||| |
Sbjct: 217 gtataccggaatgccgtcgccgccgtcgtcatggcaccattcgcgctctggttcgagang 276
Query: 232 aaaacaaggcc 242
||||||||||
Sbjct: 277 naaacaaggcc 287
>ref|NM_195516.1| Oryza sativa (japonica cultivar-group) putative nodulin-like
protein (OSJNBa0082N11.14), mRNA
Length = 993
Score = 105 bits (53), Expect = 2e-020
Identities = 128/153 (83%)
Strand = Plus / Plus
Query: 79 atggccatggtgtttcttcagttcggcttcgccggaatgttcctcatctccgtcgcgtcc 138
||||| ||||| || || ||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 atggcgatggtcttcctacagttcggcttcgccgggctgttcctcatctccgtcgcgtcg 60
Query: 139 ctgcggcagggaatgagccactatgtccttgttgtctaccggaacgtagtggcagccatt 198
|| ||||| || ||||||||||| || || || || |||||||| | || || ||| |
Sbjct: 61 ctacggcaaggcatgagccactacgtgctcgtcgtataccggaatgccgtcgccgccgtc 120
Query: 199 gtcatggctccattcgcgctatggtttgagagg 231
|||||||| ||||||||||| ||||| ||||||
Sbjct: 121 gtcatggcaccattcgcgctctggttcgagagg 153
Score = 91.7 bits (46), Expect = 4e-016
Identities = 103/122 (84%)
Strand = Plus / Plus
Query: 298 gtgcttgaccaaaacttcatctacatgggagtgaatagcacatcagcaagcttctcctct 357
|||||||||||||||||| |||| ||||||| || | ||| || || |||||||| ||
Sbjct: 157 gtgcttgaccaaaacttcttctatatgggagccaagaacacgtcggcgagcttctcatca 216
Query: 358 gcgttaaccaacatattgccagctctaacttttgtaaatgccatcatactcaggatggag 417
|| | ||||||||||| || ||| |||| |||||||||||||||||||| |||||||||
Sbjct: 217 gcactcaccaacatattacctgctgtaacgtttgtaaatgccatcatactgaggatggag 276
Query: 418 ag 419
||
Sbjct: 277 ag 278
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 603,503
Number of Sequences: 438736
Number of extensions: 603503
Number of successful extensions: 13104
Number of sequences better than 0.5: 22
Number of HSP's better than 0.5 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12942
Number of HSP's gapped (non-prelim): 112
length of query: 542
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 521
effective length of database: 2,791,206,460
effective search space: 1454218565660
effective search space used: 1454218565660
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)