BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAZ2b01.yg.2.1
(541 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_467688.1| Oryza sativa (japonica cultivar-group), mRNA 333 6e-089
dbj|AP005112.3| Oryza sativa (japonica cultivar-group) geno... 139 2e-030
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 139 2e-030
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 139 2e-030
gb|AACV01005369.1| Oryza sativa (japonica cultivar-group) c... 117 6e-024
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 117 6e-024
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 117 6e-024
ref|XM_469566.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.30
>ref|XM_467688.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2955
Score = 333 bits (168), Expect = 6e-089
Identities = 333/388 (85%)
Strand = Plus / Plus
Query: 16 taaatgatgtccttgatcgagcaaagattgaagctggaaagttagagcttgaagcggtgc 75
|||||||||| |||||||| || ||||||||||| || || || |||||||| || ||||
Sbjct: 1265 taaatgatgtacttgatcgggctaagattgaagcagggaaattggagcttgaggcagtgc 1324
Query: 76 cttttgacctgcgttctctcatggatgatgttatttccttattttcttcaaagtcacggg 135
| ||||||||||| ||||||||||||||||| || ||||||||||||||||| ||| | |
Sbjct: 1325 catttgacctgcggtctctcatggatgatgtgatctccttattttcttcaaaatcaagag 1384
Query: 136 agaagtgcattgagcttgcagtatttgtatgtgacaatgttccgaaggatgttcttggag 195
|||||||||||||||||||||| ||||||||||| ||||||| || | |||| ||||||
Sbjct: 1385 agaagtgcattgagcttgcagtgtttgtatgtgatgatgttccaaaagttgttattggag 1444
Query: 196 atccttggaggtttcggcagatactaacaaatttggtcggcaatgcagtcaaattcacag 255
|||| ||||| | ||| || ||||| ||||||||||| || |||||||||||||||||||
Sbjct: 1445 atccatggagatatcgacaaatactgacaaatttggtgggaaatgcagtcaaattcacag 1504
Query: 256 aacggggtcatgtatttgtgcgggtctgtttggctgataactcaaatatggaagccggtc 315
||||||| |||||||||||||| ||||| ||||||| |||||||| ||||||| ||
Sbjct: 1505 aacggggccatgtatttgtgcgagtctgcctggctgagaactcaaaagtggaagctaatc 1564
Query: 316 aggtcctaaatggagccatgaatgggaaagatggtagagttgattcaacaactaatggtg 375
| ||||| |||||| |||||||||||||||| || | |||||| | ||| ||||||| |
Sbjct: 1565 aagtccttaatggaaccatgaatgggaaagacggcaaagttgagactacagctaatggcg 1624
Query: 376 ccttcaatactctgagtgggtttgaagc 403
||||||||||| ||||||| ||| ||||
Sbjct: 1625 ccttcaatactttgagtggttttcaagc 1652
>dbj|AP005112.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0684F11
Length = 147731
Score = 139 bits (70), Expect = 2e-030
Identities = 118/134 (88%)
Strand = Plus / Plus
Query: 16 taaatgatgtccttgatcgagcaaagattgaagctggaaagttagagcttgaagcggtgc 75
|||||||||| |||||||| || ||||||||||| || || || |||||||| || ||||
Sbjct: 28552 taaatgatgtacttgatcgggctaagattgaagcagggaaattggagcttgaggcagtgc 28611
Query: 76 cttttgacctgcgttctctcatggatgatgttatttccttattttcttcaaagtcacggg 135
| ||||||||||| ||||||||||||||||| || ||||||||||||||||| ||| | |
Sbjct: 28612 catttgacctgcggtctctcatggatgatgtgatctccttattttcttcaaaatcaagag 28671
Query: 136 agaagtgcattgag 149
||||||||||||||
Sbjct: 28672 agaagtgcattgag 28685
Score = 117 bits (59), Expect = 6e-024
Identities = 131/155 (84%)
Strand = Plus / Plus
Query: 249 ttcacagaacggggtcatgtatttgtgcgggtctgtttggctgataactcaaatatggaa 308
|||||||||||||| |||||||||||||| ||||| ||||||| |||||||| |||||
Sbjct: 29154 ttcacagaacggggccatgtatttgtgcgagtctgcctggctgagaactcaaaagtggaa 29213
Query: 309 gccggtcaggtcctaaatggagccatgaatgggaaagatggtagagttgattcaacaact 368
|| ||| ||||| |||||| |||||||||||||||| || | |||||| | ||| ||
Sbjct: 29214 gctaatcaagtccttaatggaaccatgaatgggaaagacggcaaagttgagactacagct 29273
Query: 369 aatggtgccttcaatactctgagtgggtttgaagc 403
||||| |||||||||||| ||||||| ||| ||||
Sbjct: 29274 aatggcgccttcaatactttgagtggttttcaagc 29308
Score = 81.8 bits (41), Expect = 4e-013
Identities = 86/101 (85%)
Strand = Plus / Plus
Query: 148 agcttgcagtatttgtatgtgacaatgttccgaaggatgttcttggagatccttggaggt 207
|||||||||| ||||||||||| ||||||| || | |||| |||||||||| ||||| |
Sbjct: 28877 agcttgcagtgtttgtatgtgatgatgttccaaaagttgttattggagatccatggagat 28936
Query: 208 ttcggcagatactaacaaatttggtcggcaatgcagtcaaa 248
||| || ||||| ||||||||||| || ||||||||||||
Sbjct: 28937 atcgacaaatactgacaaatttggtgggaaatgcagtcaaa 28977
>ref|NT_107181.1| Oryza sativa (japonica cultivar-group)
Length = 9248309
Score = 139 bits (70), Expect = 2e-030
Identities = 118/134 (88%)
Strand = Plus / Plus
Query: 16 taaatgatgtccttgatcgagcaaagattgaagctggaaagttagagcttgaagcggtgc 75
|||||||||| |||||||| || ||||||||||| || || || |||||||| || ||||
Sbjct: 6009974 taaatgatgtacttgatcgggctaagattgaagcagggaaattggagcttgaggcagtgc 6010033
Query: 76 cttttgacctgcgttctctcatggatgatgttatttccttattttcttcaaagtcacggg 135
| ||||||||||| ||||||||||||||||| || ||||||||||||||||| ||| | |
Sbjct: 6010034 catttgacctgcggtctctcatggatgatgtgatctccttattttcttcaaaatcaagag 6010093
Query: 136 agaagtgcattgag 149
||||||||||||||
Sbjct: 6010094 agaagtgcattgag 6010107
Score = 117 bits (59), Expect = 6e-024
Identities = 131/155 (84%)
Strand = Plus / Plus
Query: 249 ttcacagaacggggtcatgtatttgtgcgggtctgtttggctgataactcaaatatggaa 308
|||||||||||||| |||||||||||||| ||||| ||||||| |||||||| |||||
Sbjct: 6010576 ttcacagaacggggccatgtatttgtgcgagtctgcctggctgagaactcaaaagtggaa 6010635
Query: 309 gccggtcaggtcctaaatggagccatgaatgggaaagatggtagagttgattcaacaact 368
|| ||| ||||| |||||| |||||||||||||||| || | |||||| | ||| ||
Sbjct: 6010636 gctaatcaagtccttaatggaaccatgaatgggaaagacggcaaagttgagactacagct 6010695
Query: 369 aatggtgccttcaatactctgagtgggtttgaagc 403
||||| |||||||||||| ||||||| ||| ||||
Sbjct: 6010696 aatggcgccttcaatactttgagtggttttcaagc 6010730
Score = 81.8 bits (41), Expect = 4e-013
Identities = 86/101 (85%)
Strand = Plus / Plus
Query: 148 agcttgcagtatttgtatgtgacaatgttccgaaggatgttcttggagatccttggaggt 207
|||||||||| ||||||||||| ||||||| || | |||| |||||||||| ||||| |
Sbjct: 6010299 agcttgcagtgtttgtatgtgatgatgttccaaaagttgttattggagatccatggagat 6010358
Query: 208 ttcggcagatactaacaaatttggtcggcaatgcagtcaaa 248
||| || ||||| ||||||||||| || ||||||||||||
Sbjct: 6010359 atcgacaaatactgacaaatttggtgggaaatgcagtcaaa 6010399
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 139 bits (70), Expect = 2e-030
Identities = 118/134 (88%)
Strand = Plus / Plus
Query: 16 taaatgatgtccttgatcgagcaaagattgaagctggaaagttagagcttgaagcggtgc 75
|||||||||| |||||||| || ||||||||||| || || || |||||||| || ||||
Sbjct: 30844975 taaatgatgtacttgatcgggctaagattgaagcagggaaattggagcttgaggcagtgc 30845034
Query: 76 cttttgacctgcgttctctcatggatgatgttatttccttattttcttcaaagtcacggg 135
| ||||||||||| ||||||||||||||||| || ||||||||||||||||| ||| | |
Sbjct: 30845035 catttgacctgcggtctctcatggatgatgtgatctccttattttcttcaaaatcaagag 30845094
Query: 136 agaagtgcattgag 149
||||||||||||||
Sbjct: 30845095 agaagtgcattgag 30845108
Score = 117 bits (59), Expect = 6e-024
Identities = 131/155 (84%)
Strand = Plus / Plus
Query: 249 ttcacagaacggggtcatgtatttgtgcgggtctgtttggctgataactcaaatatggaa 308
|||||||||||||| |||||||||||||| ||||| ||||||| |||||||| |||||
Sbjct: 30845577 ttcacagaacggggccatgtatttgtgcgagtctgcctggctgagaactcaaaagtggaa 30845636
Query: 309 gccggtcaggtcctaaatggagccatgaatgggaaagatggtagagttgattcaacaact 368
|| ||| ||||| |||||| |||||||||||||||| || | |||||| | ||| ||
Sbjct: 30845637 gctaatcaagtccttaatggaaccatgaatgggaaagacggcaaagttgagactacagct 30845696
Query: 369 aatggtgccttcaatactctgagtgggtttgaagc 403
||||| |||||||||||| ||||||| ||| ||||
Sbjct: 30845697 aatggcgccttcaatactttgagtggttttcaagc 30845731
Score = 81.8 bits (41), Expect = 4e-013
Identities = 86/101 (85%)
Strand = Plus / Plus
Query: 148 agcttgcagtatttgtatgtgacaatgttccgaaggatgttcttggagatccttggaggt 207
|||||||||| ||||||||||| ||||||| || | |||| |||||||||| ||||| |
Sbjct: 30845300 agcttgcagtgtttgtatgtgatgatgttccaaaagttgttattggagatccatggagat 30845359
Query: 208 ttcggcagatactaacaaatttggtcggcaatgcagtcaaa 248
||| || ||||| ||||||||||| || ||||||||||||
Sbjct: 30845360 atcgacaaatactgacaaatttggtgggaaatgcagtcaaa 30845400
>gb|AACV01005369.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005369,
whole genome shotgun sequence
Length = 6338
Score = 117 bits (59), Expect = 6e-024
Identities = 131/155 (84%)
Strand = Plus / Plus
Query: 249 ttcacagaacggggtcatgtatttgtgcgggtctgtttggctgataactcaaatatggaa 308
|||||||||||||| |||||||||||||| ||||| ||||||| |||||||| |||||
Sbjct: 494 ttcacagaacggggccatgtatttgtgcgagtctgcctggctgagaactcaaaagtggaa 553
Query: 309 gccggtcaggtcctaaatggagccatgaatgggaaagatggtagagttgattcaacaact 368
|| ||| ||||| |||||| |||||||||||||||| || | |||||| | ||| ||
Sbjct: 554 gctaatcaagtccttaatggaaccatgaatgggaaagacggcaaagttgagactacagct 613
Query: 369 aatggtgccttcaatactctgagtgggtttgaagc 403
||||| |||||||||||| ||||||| ||| ||||
Sbjct: 614 aatggcgccttcaatactttgagtggttttcaagc 648
Score = 81.8 bits (41), Expect = 4e-013
Identities = 86/101 (85%)
Strand = Plus / Plus
Query: 148 agcttgcagtatttgtatgtgacaatgttccgaaggatgttcttggagatccttggaggt 207
|||||||||| ||||||||||| ||||||| || | |||| |||||||||| ||||| |
Sbjct: 217 agcttgcagtgtttgtatgtgatgatgttccaaaagttgttattggagatccatggagat 276
Query: 208 ttcggcagatactaacaaatttggtcggcaatgcagtcaaa 248
||| || ||||| ||||||||||| || ||||||||||||
Sbjct: 277 atcgacaaatactgacaaatttggtgggaaatgcagtcaaa 317
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 117 bits (59), Expect = 6e-024
Identities = 131/155 (84%)
Strand = Plus / Plus
Query: 249 ttcacagaacggggtcatgtatttgtgcgggtctgtttggctgataactcaaatatggaa 308
|||||||||||||| |||||||||||||| ||||| ||||||| |||||||| |||||
Sbjct: 17339655 ttcacagaacggggccatgtatttgtgcgagtctgcctggctgagaactcaaaagtggaa 17339714
Query: 309 gccggtcaggtcctaaatggagccatgaatgggaaagatggtagagttgattcaacaact 368
|| ||| ||||| |||||| |||||||||||||||| || | |||||| | ||| ||
Sbjct: 17339715 gctaatcaagtccttaatggaaccatgaatgggaaagacggcaaagttgagactacagct 17339774
Query: 369 aatggtgccttcaatactctgagtgggtttgaagc 403
||||| |||||||||||| ||||||| ||| ||||
Sbjct: 17339775 aatggcgccttcaatactttgagtggttttcaagc 17339809
Score = 81.8 bits (41), Expect = 4e-013
Identities = 86/101 (85%)
Strand = Plus / Plus
Query: 148 agcttgcagtatttgtatgtgacaatgttccgaaggatgttcttggagatccttggaggt 207
|||||||||| ||||||||||| ||||||| || | |||| |||||||||| ||||| |
Sbjct: 17339378 agcttgcagtgtttgtatgtgatgatgttccaaaagttgttattggagatccatggagat 17339437
Query: 208 ttcggcagatactaacaaatttggtcggcaatgcagtcaaa 248
||| || ||||| ||||||||||| || ||||||||||||
Sbjct: 17339438 atcgacaaatactgacaaatttggtgggaaatgcagtcaaa 17339478
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 117 bits (59), Expect = 6e-024
Identities = 131/155 (84%)
Strand = Plus / Plus
Query: 249 ttcacagaacggggtcatgtatttgtgcgggtctgtttggctgataactcaaatatggaa 308
|||||||||||||| |||||||||||||| ||||| ||||||| |||||||| |||||
Sbjct: 30792719 ttcacagaacggggccatgtatttgtgcgagtctgcctggctgagaactcaaaagtggaa 30792778
Query: 309 gccggtcaggtcctaaatggagccatgaatgggaaagatggtagagttgattcaacaact 368
|| ||| ||||| |||||| |||||||||||||||| || | |||||| | ||| ||
Sbjct: 30792779 gctaatcaagtccttaatggaaccatgaatgggaaagacggcaaagttgagactacagct 30792838
Query: 369 aatggtgccttcaatactctgagtgggtttgaagc 403
||||| |||||||||||| ||||||| ||| ||||
Sbjct: 30792839 aatggcgccttcaatactttgagtggttttcaagc 30792873
Score = 81.8 bits (41), Expect = 4e-013
Identities = 86/101 (85%)
Strand = Plus / Plus
Query: 148 agcttgcagtatttgtatgtgacaatgttccgaaggatgttcttggagatccttggaggt 207
|||||||||| ||||||||||| ||||||| || | |||| |||||||||| ||||| |
Sbjct: 30792442 agcttgcagtgtttgtatgtgatgatgttccaaaagttgttattggagatccatggagat 30792501
Query: 208 ttcggcagatactaacaaatttggtcggcaatgcagtcaaa 248
||| || ||||| ||||||||||| || ||||||||||||
Sbjct: 30792502 atcgacaaatactgacaaatttggtgggaaatgcagtcaaa 30792542
>ref|XM_469566.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 3042
Score = 42.1 bits (21), Expect = 0.30
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 99 gatgatgttatttccttattttcttcaaagtcacgggagaagtgcattgagcttgcagta 158
|||||||| || || |||||||||||||| ||| | ||||| | ||||||||||| |||
Sbjct: 1387 gatgatgtcatctcgttattttcttcaaaatcaagagagaaaggaattgagcttgctgta 1446
Query: 159 t 159
|
Sbjct: 1447 t 1447
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 656,014
Number of Sequences: 438736
Number of extensions: 656014
Number of successful extensions: 11047
Number of sequences better than 0.5: 8
Number of HSP's better than 0.5 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10938
Number of HSP's gapped (non-prelim): 109
length of query: 541
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 520
effective length of database: 2,791,206,460
effective search space: 1451427359200
effective search space used: 1451427359200
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)