BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAZ1h07.yg.2.1
(357 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AF485811.1| Oryza sativa BAC OSJNa0049F05, complete sequ... 54 5e-005
dbj|AK061423.1| Oryza sativa (japonica cultivar-group) cDNA... 54 5e-005
gb|AC118673.2| Genomic sequence for Oryza sativa, Nipponbar... 54 5e-005
gb|AC125411.1| Genomic sequence for Oryza sativa, Nipponbar... 54 5e-005
gb|AACV01005724.1| Oryza sativa (japonica cultivar-group) c... 54 5e-005
ref|NT_107183.1| Oryza sativa (japonica cultivar-group) 54 5e-005
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 54 5e-005
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 54 5e-005
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 54 5e-005
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 54 5e-005
gb|AU030829.1|AU030829 AU030829 Rice cDNA from immature lea... 48 0.003
gb|AU198282.1|AU198282 AU198282 Rice green shoot Oryza sati... 48 0.003
gb|CF276870.1|CF276870 14ETL--02-D03.b1 Rice etiolated leaf... 48 0.003
gb|CF293831.1|CF293831 30DGS--03-C11.b1 Rice leaf plasmid c... 48 0.003
gb|CF311056.1|CF311056 ABF--06-C03.b1 ABF3-overexpressing t... 48 0.003
gb|CF311548.1|CF311548 ABF--06-M21.g1 ABF3-overexpressing t... 48 0.003
gb|CF328550.1|CF328550 NACL--03-I06.b1 Rice callus plasmid ... 48 0.003
gb|CF333825.1|CF333825 JMT--02-N24.b1 AtJMT-overexpressing ... 48 0.003
gb|CV720797.1|CV720797 YBH--01-O04.b1 Rice before heading y... 48 0.003
dbj|AK058895.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.003
dbj|AK061068.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.003
dbj|AK100959.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.003
dbj|AK104128.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.003
dbj|AK105318.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.003
gb|AC069300.7| Oryza sativa chromosome 10 BAC OSJNBa0010C11... 48 0.003
gb|AC037426.12| Oryza sativa chromosome 10 BAC OSJNBb0014I1... 48 0.003
gb|AACV01022091.1| Oryza sativa (japonica cultivar-group) c... 48 0.003
ref|NM_197699.1| Oryza sativa (japonica cultivar-group) bet... 48 0.003
ref|NM_197700.1| Oryza sativa (japonica cultivar-group) bet... 48 0.003
ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chr... 48 0.003
gb|CH401254.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.003
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.003
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 48 0.003
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 48 0.003
gb|AU163434.1|AU163434 AU163434 Rice panicle at flowering s... 46 0.013
gb|AU165517.1|AU165517 AU165517 Rice panicle at flowering s... 46 0.013
gb|CF277133.1|CF277133 14ETL--02-I21.b1 Rice etiolated leaf... 46 0.013
gb|AU182569.1|AU182569 AU182569 Rice panicle at flowering s... 44 0.050
dbj|AK070187.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.050
dbj|AK099112.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.050
gb|AC020666.8| Oryza sativa chromosome 10 BAC OSJNBa0082M15... 44 0.050
dbj|AP003875.3| Oryza sativa (japonica cultivar-group) geno... 44 0.050
gb|AACV01017536.1| Oryza sativa (japonica cultivar-group) c... 44 0.050
gb|AACV01022050.1| Oryza sativa (japonica cultivar-group) c... 44 0.050
ref|NM_197637.1| Oryza sativa (japonica cultivar-group) bet... 44 0.050
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 44 0.050
gb|CH401229.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.050
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.050
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 44 0.050
>gb|AF485811.1| Oryza sativa BAC OSJNa0049F05, complete sequence
Length = 162241
Score = 54.0 bits (27), Expect = 5e-005
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 87 cgccggcatcatcgacatccagtttaggagg 117
|||||||||||||||||||||||| ||||||
Sbjct: 93944 cgccggcatcatcgacatccagttcaggagg 93914
>dbj|AK061423.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-G02, full
insert sequence
Length = 1027
Score = 54.0 bits (27), Expect = 5e-005
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 87 cgccggcatcatcgacatccagtttaggagg 117
|||||||||||||||||||||||| ||||||
Sbjct: 458 cgccggcatcatcgacatccagttcaggagg 488
>gb|AC118673.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
OSJNBb0080O10, from chromosome 3, complete sequence
Length = 127917
Score = 54.0 bits (27), Expect = 5e-005
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 87 cgccggcatcatcgacatccagtttaggagg 117
|||||||||||||||||||||||| ||||||
Sbjct: 5789 cgccggcatcatcgacatccagttcaggagg 5819
>gb|AC125411.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
OSJNAb0079B22, from chromosome 3, complete sequence
Length = 156933
Score = 54.0 bits (27), Expect = 5e-005
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 87 cgccggcatcatcgacatccagtttaggagg 117
|||||||||||||||||||||||| ||||||
Sbjct: 102722 cgccggcatcatcgacatccagttcaggagg 102752
>gb|AACV01005724.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg005724, whole
genome shotgun sequence
Length = 15116
Score = 54.0 bits (27), Expect = 5e-005
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 87 cgccggcatcatcgacatccagtttaggagg 117
|||||||||||||||||||||||| ||||||
Sbjct: 4269 cgccggcatcatcgacatccagttcaggagg 4239
>ref|NT_107183.1| Oryza sativa (japonica cultivar-group)
Length = 1680144
Score = 54.0 bits (27), Expect = 5e-005
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 87 cgccggcatcatcgacatccagtttaggagg 117
|||||||||||||||||||||||| ||||||
Sbjct: 168722 cgccggcatcatcgacatccagttcaggagg 168752
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010
genomic scaffold, whole genome shotgun sequence
Length = 13858245
Score = 54.0 bits (27), Expect = 5e-005
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 87 cgccggcatcatcgacatccagtttaggagg 117
|||||||||||||||||||||||| ||||||
Sbjct: 197960 cgccggcatcatcgacatccagttcaggagg 197990
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 54.0 bits (27), Expect = 5e-005
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 87 cgccggcatcatcgacatccagtttaggagg 117
|||||||||||||||||||||||| ||||||
Sbjct: 390322 cgccggcatcatcgacatccagttcaggagg 390352
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3,
complete sequence
Length = 36192742
Score = 54.0 bits (27), Expect = 5e-005
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 87 cgccggcatcatcgacatccagtttaggagg 117
|||||||||||||||||||||||| ||||||
Sbjct: 168722 cgccggcatcatcgacatccagttcaggagg 168752
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 54.0 bits (27), Expect = 5e-005
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 87 cgccggcatcatcgacatccagtttaggagg 117
|||||||||||||||||||||||| ||||||
Sbjct: 168722 cgccggcatcatcgacatccagttcaggagg 168752
>gb|AU030829.1|AU030829 AU030829 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E60311_1A, mRNA sequence
Length = 378
Score = 48.1 bits (24), Expect = 0.003
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 87 cgccggcatcatcgacatccagtt 110
||||||||||||||||||||||||
Sbjct: 186 cgccggcatcatcgacatccagtt 209
>gb|AU198282.1|AU198282 AU198282 Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA clone S16583, mRNA sequence
Length = 472
Score = 48.1 bits (24), Expect = 0.003
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 87 cgccggcatcatcgacatccagtt 110
||||||||||||||||||||||||
Sbjct: 165 cgccggcatcatcgacatccagtt 188
>gb|CF276870.1|CF276870 14ETL--02-D03.b1 Rice etiolated leaf plasmid cDNA library (14ETL)
Oryza sativa (japonica cultivar-group) cDNA clone
14ETL--02-D03, mRNA sequence
Length = 581
Score = 48.1 bits (24), Expect = 0.003
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 87 cgccggcatcatcgacatccagtt 110
||||||||||||||||||||||||
Sbjct: 556 cgccggcatcatcgacatccagtt 579
>gb|CF293831.1|CF293831 30DGS--03-C11.b1 Rice leaf plasmid cDNA library I (30DGS) Oryza
sativa (japonica cultivar-group) cDNA clone
30DGS--03-C11, mRNA sequence
Length = 632
Score = 48.1 bits (24), Expect = 0.003
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 87 cgccggcatcatcgacatccagtt 110
||||||||||||||||||||||||
Sbjct: 559 cgccggcatcatcgacatccagtt 582
>gb|CF311056.1|CF311056 ABF--06-C03.b1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--06-C03, mRNA sequence
Length = 585
Score = 48.1 bits (24), Expect = 0.003
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 87 cgccggcatcatcgacatccagtt 110
||||||||||||||||||||||||
Sbjct: 558 cgccggcatcatcgacatccagtt 581
>gb|CF311548.1|CF311548 ABF--06-M21.g1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--06-M21, mRNA sequence
Length = 583
Score = 48.1 bits (24), Expect = 0.003
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 87 cgccggcatcatcgacatccagtt 110
||||||||||||||||||||||||
Sbjct: 558 cgccggcatcatcgacatccagtt 581
>gb|CF328550.1|CF328550 NACL--03-I06.b1 Rice callus plasmid cDNA library (NACL) Oryza
sativa (japonica cultivar-group) cDNA clone
NACL--03-I06, mRNA sequence
Length = 632
Score = 48.1 bits (24), Expect = 0.003
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 87 cgccggcatcatcgacatccagtt 110
||||||||||||||||||||||||
Sbjct: 558 cgccggcatcatcgacatccagtt 581
>gb|CF333825.1|CF333825 JMT--02-N24.b1 AtJMT-overexpressing transgenic rice plasmid cDNA
library (JMT) Oryza sativa (japonica cultivar-group)
cDNA clone JMT--02-N24, mRNA sequence
Length = 577
Score = 48.1 bits (24), Expect = 0.003
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 87 cgccggcatcatcgacatccagtt 110
||||||||||||||||||||||||
Sbjct: 552 cgccggcatcatcgacatccagtt 575
>gb|CV720797.1|CV720797 YBH--01-O04.b1 Rice before heading yeast two hybrid lambda phage
cDNA library (YBH) Oryza sativa (japonica
cultivar-group) cDNA clone YBH--01-O04, mRNA sequence
Length = 453
Score = 48.1 bits (24), Expect = 0.003
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 87 cgccggcatcatcgacatccagtt 110
||||||||||||||||||||||||
Sbjct: 375 cgccggcatcatcgacatccagtt 398
>dbj|AK058895.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-007-F11, full
insert sequence
Length = 1026
Score = 48.1 bits (24), Expect = 0.003
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 87 cgccggcatcatcgacatccagtt 110
||||||||||||||||||||||||
Sbjct: 476 cgccggcatcatcgacatccagtt 499
>dbj|AK061068.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-206-C01, full
insert sequence
Length = 1259
Score = 48.1 bits (24), Expect = 0.003
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 87 cgccggcatcatcgacatccagtt 110
||||||||||||||||||||||||
Sbjct: 483 cgccggcatcatcgacatccagtt 506
>dbj|AK100959.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023140O05, full
insert sequence
Length = 1313
Score = 48.1 bits (24), Expect = 0.003
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 87 cgccggcatcatcgacatccagtt 110
||||||||||||||||||||||||
Sbjct: 558 cgccggcatcatcgacatccagtt 581
>dbj|AK104128.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-F04, full
insert sequence
Length = 1043
Score = 48.1 bits (24), Expect = 0.003
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 87 cgccggcatcatcgacatccagtt 110
||||||||||||||||||||||||
Sbjct: 485 cgccggcatcatcgacatccagtt 508
>dbj|AK105318.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-117-F11, full
insert sequence
Length = 1031
Score = 48.1 bits (24), Expect = 0.003
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 87 cgccggcatcatcgacatccagtt 110
||||||||||||||||||||||||
Sbjct: 302 cgccggcatcatcgacatccagtt 325
>gb|AC069300.7| Oryza sativa chromosome 10 BAC OSJNBa0010C11 genomic sequence,
complete sequence
Length = 147117
Score = 48.1 bits (24), Expect = 0.003
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 87 cgccggcatcatcgacatccagtt 110
||||||||||||||||||||||||
Sbjct: 4764 cgccggcatcatcgacatccagtt 4741
>gb|AC037426.12| Oryza sativa chromosome 10 BAC OSJNBb0014I11 genomic sequence, complete
sequence
Length = 135510
Score = 48.1 bits (24), Expect = 0.003
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 87 cgccggcatcatcgacatccagtt 110
||||||||||||||||||||||||
Sbjct: 16827 cgccggcatcatcgacatccagtt 16850
Score = 48.1 bits (24), Expect = 0.003
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 87 cgccggcatcatcgacatccagtt 110
||||||||||||||||||||||||
Sbjct: 4609 cgccggcatcatcgacatccagtt 4632
>gb|AACV01022091.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg022091, whole
genome shotgun sequence
Length = 36005
Score = 48.1 bits (24), Expect = 0.003
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 87 cgccggcatcatcgacatccagtt 110
||||||||||||||||||||||||
Sbjct: 16121 cgccggcatcatcgacatccagtt 16144
Score = 48.1 bits (24), Expect = 0.003
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 87 cgccggcatcatcgacatccagtt 110
||||||||||||||||||||||||
Sbjct: 3903 cgccggcatcatcgacatccagtt 3926
>ref|NM_197699.1| Oryza sativa (japonica cultivar-group) beta-expansin EXPB2
(OSJNBb0014I11.2), mRNA
Length = 1262
Score = 48.1 bits (24), Expect = 0.003
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 87 cgccggcatcatcgacatccagtt 110
||||||||||||||||||||||||
Sbjct: 486 cgccggcatcatcgacatccagtt 509
>ref|NM_197700.1| Oryza sativa (japonica cultivar-group) beta-expansin EXPB3
(OSJNBb0014I11.1), mRNA
Length = 904
Score = 48.1 bits (24), Expect = 0.003
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 87 cgccggcatcatcgacatccagtt 110
||||||||||||||||||||||||
Sbjct: 547 cgccggcatcatcgacatccagtt 570
>ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chromosome 10
Length = 4609300
Score = 48.1 bits (24), Expect = 0.003
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 87 cgccggcatcatcgacatccagtt 110
||||||||||||||||||||||||
Sbjct: 3251944 cgccggcatcatcgacatccagtt 3251921
Score = 48.1 bits (24), Expect = 0.003
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 87 cgccggcatcatcgacatccagtt 110
||||||||||||||||||||||||
Sbjct: 3239726 cgccggcatcatcgacatccagtt 3239703
Score = 44.1 bits (22), Expect = 0.050
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 88 gccggcatcatcgacatccagtttaggagg 117
||||||||||||||||| ||||| ||||||
Sbjct: 2869207 gccggcatcatcgacatgcagttcaggagg 2869236
>gb|CH401254.1| Oryza sativa (japonica cultivar-group) chromosome 10 scaffold000091 genomic
scaffold, whole genome shotgun sequence
Length = 10615099
Score = 48.1 bits (24), Expect = 0.003
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 87 cgccggcatcatcgacatccagtt 110
||||||||||||||||||||||||
Sbjct: 9305103 cgccggcatcatcgacatccagtt 9305080
Score = 48.1 bits (24), Expect = 0.003
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 87 cgccggcatcatcgacatccagtt 110
||||||||||||||||||||||||
Sbjct: 9292885 cgccggcatcatcgacatccagtt 9292862
Score = 44.1 bits (22), Expect = 0.050
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 88 gccggcatcatcgacatccagtttaggagg 117
||||||||||||||||| ||||| ||||||
Sbjct: 8898921 gccggcatcatcgacatgcagttcaggagg 8898950
>gb|CM000147.1| Oryza sativa (japonica cultivar-group) chromosome 10, whole genome shotgun
sequence
Length = 21480893
Score = 48.1 bits (24), Expect = 0.003
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 87 cgccggcatcatcgacatccagtt 110
||||||||||||||||||||||||
Sbjct: 20170897 cgccggcatcatcgacatccagtt 20170874
Score = 48.1 bits (24), Expect = 0.003
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 87 cgccggcatcatcgacatccagtt 110
||||||||||||||||||||||||
Sbjct: 20158679 cgccggcatcatcgacatccagtt 20158656
Score = 44.1 bits (22), Expect = 0.050
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 88 gccggcatcatcgacatccagtttaggagg 117
||||||||||||||||| ||||| ||||||
Sbjct: 19764715 gccggcatcatcgacatgcagttcaggagg 19764744
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
sequence
Length = 22685906
Score = 48.1 bits (24), Expect = 0.003
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 87 cgccggcatcatcgacatccagtt 110
||||||||||||||||||||||||
Sbjct: 21329750 cgccggcatcatcgacatccagtt 21329727
Score = 48.1 bits (24), Expect = 0.003
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 87 cgccggcatcatcgacatccagtt 110
||||||||||||||||||||||||
Sbjct: 21317532 cgccggcatcatcgacatccagtt 21317509
Score = 44.1 bits (22), Expect = 0.050
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 88 gccggcatcatcgacatccagtttaggagg 117
||||||||||||||||| ||||| ||||||
Sbjct: 20947013 gccggcatcatcgacatgcagttcaggagg 20947042
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
Length = 22698374
Score = 48.1 bits (24), Expect = 0.003
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 87 cgccggcatcatcgacatccagtt 110
||||||||||||||||||||||||
Sbjct: 21341014 cgccggcatcatcgacatccagtt 21340991
Score = 48.1 bits (24), Expect = 0.003
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 87 cgccggcatcatcgacatccagtt 110
||||||||||||||||||||||||
Sbjct: 21328796 cgccggcatcatcgacatccagtt 21328773
Score = 44.1 bits (22), Expect = 0.050
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 88 gccggcatcatcgacatccagtttaggagg 117
||||||||||||||||| ||||| ||||||
Sbjct: 20958277 gccggcatcatcgacatgcagttcaggagg 20958306
>gb|AU163434.1|AU163434 AU163434 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E0513, mRNA sequence
Length = 645
Score = 46.1 bits (23), Expect = 0.013
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 88 gccggcatcatcgacatccagtttaggagg 117
||||||||||||||||| ||||| ||||||
Sbjct: 28 gccggcatcatcgacatncagttcaggagg 57
>gb|AU165517.1|AU165517 AU165517 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E2044, mRNA sequence
Length = 672
Score = 46.1 bits (23), Expect = 0.013
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 88 gccggcatcatcgacatccagtttaggagg 117
||||||||||||||||| ||||| ||||||
Sbjct: 52 gccggcatcatcgacatncagttcaggagg 81
>gb|CF277133.1|CF277133 14ETL--02-I21.b1 Rice etiolated leaf plasmid cDNA library (14ETL)
Oryza sativa (japonica cultivar-group) cDNA clone
14ETL--02-I21, mRNA sequence
Length = 602
Score = 46.1 bits (23), Expect = 0.013
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 87 cgccggcatcatcgacatccagt 109
|||||||||||||||||||||||
Sbjct: 580 cgccggcatcatcgacatccagt 602
>gb|AU182569.1|AU182569 AU182569 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E4331, mRNA sequence
Length = 445
Score = 44.1 bits (22), Expect = 0.050
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 88 gccggcatcatcgacatccagtttaggagg 117
||||||||||||||||| ||||| ||||||
Sbjct: 249 gccggcatcatcgacatgcagttcaggagg 278
>dbj|AK070187.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023043G12, full
insert sequence
Length = 1121
Score = 44.1 bits (22), Expect = 0.050
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 88 gccggcatcatcgacatccagtttaggagg 117
||||||||||||||||| ||||| ||||||
Sbjct: 521 gccggcatcatcgacatgcagttcaggagg 550
>dbj|AK099112.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023033P05, full
insert sequence
Length = 1071
Score = 44.1 bits (22), Expect = 0.050
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 88 gccggcatcatcgacatccagtttaggagg 117
||||||||||||||||| ||||| ||||||
Sbjct: 521 gccggcatcatcgacatgcagttcaggagg 550
>gb|AC020666.8| Oryza sativa chromosome 10 BAC OSJNBa0082M15 genomic sequence, complete
sequence
Length = 158550
Score = 44.1 bits (22), Expect = 0.050
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 88 gccggcatcatcgacatccagtttaggagg 117
||||||||||||||||| ||||| ||||||
Sbjct: 117378 gccggcatcatcgacatgcagttcaggagg 117349
>dbj|AP003875.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
clone:OJ1119_C05
Length = 126112
Score = 44.1 bits (22), Expect = 0.050
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 89 ccggcatcatcgacatccagtttagg 114
||||||||||||||||||| ||||||
Sbjct: 74529 ccggcatcatcgacatccactttagg 74504
>gb|AACV01017536.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg017536, whole
genome shotgun sequence
Length = 64614
Score = 44.1 bits (22), Expect = 0.050
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 89 ccggcatcatcgacatccagtttagg 114
||||||||||||||||||| ||||||
Sbjct: 14217 ccggcatcatcgacatccactttagg 14192
>gb|AACV01022050.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg022050, whole
genome shotgun sequence
Length = 7523
Score = 44.1 bits (22), Expect = 0.050
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 88 gccggcatcatcgacatccagtttaggagg 117
||||||||||||||||| ||||| ||||||
Sbjct: 1288 gccggcatcatcgacatgcagttcaggagg 1259
>ref|NM_197637.1| Oryza sativa (japonica cultivar-group) beta-expansin
(OSJNBa0082M15.4), mRNA
Length = 1148
Score = 44.1 bits (22), Expect = 0.050
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 88 gccggcatcatcgacatccagtttaggagg 117
||||||||||||||||| ||||| ||||||
Sbjct: 505 gccggcatcatcgacatgcagttcaggagg 534
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 44.1 bits (22), Expect = 0.050
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 89 ccggcatcatcgacatccagtttagg 114
||||||||||||||||||| ||||||
Sbjct: 5978662 ccggcatcatcgacatccactttagg 5978637
>gb|CH401229.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000066
genomic scaffold, whole genome shotgun sequence
Length = 2575203
Score = 44.1 bits (22), Expect = 0.050
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 89 ccggcatcatcgacatccagtttagg 114
||||||||||||||||||| ||||||
Sbjct: 997965 ccggcatcatcgacatccactttagg 997940
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 44.1 bits (22), Expect = 0.050
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 89 ccggcatcatcgacatccagtttagg 114
||||||||||||||||||| ||||||
Sbjct: 6024668 ccggcatcatcgacatccactttagg 6024643
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 44.1 bits (22), Expect = 0.050
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 89 ccggcatcatcgacatccagtttagg 114
||||||||||||||||||| ||||||
Sbjct: 6211136 ccggcatcatcgacatccactttagg 6211111
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 165,499
Number of Sequences: 438736
Number of extensions: 165499
Number of successful extensions: 2355
Number of sequences better than 0.5: 50
Number of HSP's better than 0.5 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2115
Number of HSP's gapped (non-prelim): 240
length of query: 357
length of database: 2,800,419,916
effective HSP length: 20
effective length of query: 337
effective length of database: 2,791,645,196
effective search space: 940784431052
effective search space used: 940784431052
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)