BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAW3d03.yg.2.1
(557 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_469566.1| Oryza sativa (japonica cultivar-group), mRNA 168 2e-039
gb|AQ160958.1|AQ160958 nbxb0006A20r CUGI Rice BAC Library O... 119 2e-024
gb|AQ259758.1|AQ259758 nbxb0023D16r CUGI Rice BAC Library O... 119 2e-024
gb|AC091532.13| Oryza sativa chromosome 3 BAC OSJNBa0078A17... 119 2e-024
gb|AACV01007799.1| Oryza sativa (japonica cultivar-group) c... 119 2e-024
ref|NT_079916.2| Oryza sativa (japonica cultivar-group) 119 2e-024
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 119 2e-024
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 119 2e-024
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 119 2e-024
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 119 2e-024
gb|AQ272632.1|AQ272632 nbxb0028G04r CUGI Rice BAC Library O... 64 9e-008
>ref|XM_469566.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 3042
Score = 168 bits (85), Expect = 2e-039
Identities = 231/287 (80%)
Strand = Plus / Minus
Query: 3 cccacnagcatacatatgacaaagacaccagatggggtagaaattgcagacnangggaca 62
||||| ||||||||||| |||||||| || ||||| |||| |||||||||| | | |||
Sbjct: 1046 cccaccagcatacatataacaaagacccctgatggtgtagtaattgcagaccatgaaaca 987
Query: 63 tgaggctnnnntctgtatctgcanaccatatgatgctttctgaatggatcaccaaaatct 122
||| ||| |||||||||||| ||||| ||||||||||| |||||||||||||||||
Sbjct: 986 tgaagcttgtttctgtatctgcaaaccatctgatgctttctcaatggatcaccaaaatcc 927
Query: 123 agcatgcagatgtgcgatgatgaggggnnnncaagaggaacttctgatnnatacatgaca 182
| | | || |||| |||| |||||| |||||||||| || ||| |||||| |||
Sbjct: 926 aacgtataggtgtgtgatggtgagggaataccaagaggaacctcagatccatacatcaca 867
Query: 183 agagggttcgaaatgtttgtgacatcataaacatttaccaccaattnctgattgccagct 242
|||||||| || ||||||||||||||||||||| |||||||||| ||| || ||||||
Sbjct: 866 agagggtttgagtggtttgtgacatcataaacattgaccaccaattcctggttaccagct 807
Query: 243 agctgcctnnncnnattttnnactaatgattctacatcaaatgctcc 289
| ||| || | ||||| |||| ||| || ||||||||||||||
Sbjct: 806 aactgtctcaacaaattttctactagtgactccacatcaaatgctcc 760
>gb|AQ160958.1|AQ160958 nbxb0006A20r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0006A20r, DNA sequence
Length = 636
Score = 119 bits (60), Expect = 2e-024
Identities = 168/209 (80%)
Strand = Plus / Plus
Query: 81 ctgcanaccatatgatgctttctgaatggatcaccaaaatctagcatgcagatgtgcgat 140
||||| ||||| ||||||||||| ||||||||||||||||| | | | || |||| |||
Sbjct: 144 ctgcaaaccatctgatgctttctcaatggatcaccaaaatccaacgtataggtgtgtgat 203
Query: 141 gatgaggggnnnncaagaggaacttctgatnnatacatgacaagagggttcgaaatgttt 200
| |||||| |||||||||| || ||| |||||| ||||||||||| || ||||
Sbjct: 204 ggtgagggaataccaagaggaacctcagatccatacatcacaagagggtttgagtggttt 263
Query: 201 gtgacatcataaacatttaccaccaattnctgattgccagctagctgcctnnncnnattt 260
||||||||||||||||| |||||||||| ||| || ||||||| ||| || | ||||
Sbjct: 264 gtgacatcataaacattgaccaccaattcctggttaccagctaactgtctcaacaaattt 323
Query: 261 tnnactaatgattctacatcaaatgctcc 289
| |||| ||| || ||||||||||||||
Sbjct: 324 tctactagtgactccacatcaaatgctcc 352
>gb|AQ259758.1|AQ259758 nbxb0023D16r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0023D16r, DNA sequence
Length = 713
Score = 119 bits (60), Expect = 2e-024
Identities = 168/209 (80%)
Strand = Plus / Plus
Query: 81 ctgcanaccatatgatgctttctgaatggatcaccaaaatctagcatgcagatgtgcgat 140
||||| ||||| ||||||||||| ||||||||||||||||| | | | || |||| |||
Sbjct: 100 ctgcaaaccatctgatgctttctcaatggatcaccaaaatccaacgtataggtgtgtgat 159
Query: 141 gatgaggggnnnncaagaggaacttctgatnnatacatgacaagagggttcgaaatgttt 200
| |||||| |||||||||| || ||| |||||| ||||||||||| || ||||
Sbjct: 160 ggtgagggaataccaagaggaacctcagatccatacatcacaagagggtttgagtggttt 219
Query: 201 gtgacatcataaacatttaccaccaattnctgattgccagctagctgcctnnncnnattt 260
||||||||||||||||| |||||||||| ||| || ||||||| ||| || | ||||
Sbjct: 220 gtgacatcataaacattgaccaccaattcctggttaccagctaactgtctcaacaaattt 279
Query: 261 tnnactaatgattctacatcaaatgctcc 289
| |||| ||| || ||||||||||||||
Sbjct: 280 tctactagtgactccacatcaaatgctcc 308
>gb|AC091532.13| Oryza sativa chromosome 3 BAC OSJNBa0078A17 genomic sequence, complete
sequence
Length = 147344
Score = 119 bits (60), Expect = 2e-024
Identities = 168/209 (80%)
Strand = Plus / Minus
Query: 81 ctgcanaccatatgatgctttctgaatggatcaccaaaatctagcatgcagatgtgcgat 140
||||| ||||| ||||||||||| ||||||||||||||||| | | | || |||| |||
Sbjct: 66308 ctgcaaaccatctgatgctttctcaatggatcaccaaaatccaacgtataggtgtgtgat 66249
Query: 141 gatgaggggnnnncaagaggaacttctgatnnatacatgacaagagggttcgaaatgttt 200
| |||||| |||||||||| || ||| |||||| ||||||||||| || ||||
Sbjct: 66248 ggtgagggaataccaagaggaacctcagatccatacatcacaagagggtttgagtggttt 66189
Query: 201 gtgacatcataaacatttaccaccaattnctgattgccagctagctgcctnnncnnattt 260
||||||||||||||||| |||||||||| ||| || ||||||| ||| || | ||||
Sbjct: 66188 gtgacatcataaacattgaccaccaattcctggttaccagctaactgtctcaacaaattt 66129
Query: 261 tnnactaatgattctacatcaaatgctcc 289
| |||| ||| || ||||||||||||||
Sbjct: 66128 tctactagtgactccacatcaaatgctcc 66100
Score = 58.0 bits (29), Expect = 5e-006
Identities = 67/82 (81%)
Strand = Plus / Minus
Query: 3 cccacnagcatacatatgacaaagacaccagatggggtagaaattgcagacnangggaca 62
||||| ||||||||||| |||||||| || ||||| |||| |||||||||| | | |||
Sbjct: 66477 cccaccagcatacatataacaaagacccctgatggtgtagtaattgcagaccatgaaaca 66418
Query: 63 tgaggctnnnntctgtatctgc 84
||| ||| |||||||||||
Sbjct: 66417 tgaagcttgtttctgtatctgc 66396
>gb|AACV01007799.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg007799, whole
genome shotgun sequence
Length = 57179
Score = 119 bits (60), Expect = 2e-024
Identities = 168/209 (80%)
Strand = Plus / Minus
Query: 81 ctgcanaccatatgatgctttctgaatggatcaccaaaatctagcatgcagatgtgcgat 140
||||| ||||| ||||||||||| ||||||||||||||||| | | | || |||| |||
Sbjct: 51408 ctgcaaaccatctgatgctttctcaatggatcaccaaaatccaacgtataggtgtgtgat 51349
Query: 141 gatgaggggnnnncaagaggaacttctgatnnatacatgacaagagggttcgaaatgttt 200
| |||||| |||||||||| || ||| |||||| ||||||||||| || ||||
Sbjct: 51348 ggtgagggaataccaagaggaacctcagatccatacatcacaagagggtttgagtggttt 51289
Query: 201 gtgacatcataaacatttaccaccaattnctgattgccagctagctgcctnnncnnattt 260
||||||||||||||||| |||||||||| ||| || ||||||| ||| || | ||||
Sbjct: 51288 gtgacatcataaacattgaccaccaattcctggttaccagctaactgtctcaacaaattt 51229
Query: 261 tnnactaatgattctacatcaaatgctcc 289
| |||| ||| || ||||||||||||||
Sbjct: 51228 tctactagtgactccacatcaaatgctcc 51200
Score = 58.0 bits (29), Expect = 5e-006
Identities = 67/82 (81%)
Strand = Plus / Minus
Query: 3 cccacnagcatacatatgacaaagacaccagatggggtagaaattgcagacnangggaca 62
||||| ||||||||||| |||||||| || ||||| |||| |||||||||| | | |||
Sbjct: 51577 cccaccagcatacatataacaaagacccctgatggtgtagtaattgcagaccatgaaaca 51518
Query: 63 tgaggctnnnntctgtatctgc 84
||| ||| |||||||||||
Sbjct: 51517 tgaagcttgtttctgtatctgc 51496
>ref|NT_079916.2| Oryza sativa (japonica cultivar-group)
Length = 3914802
Score = 119 bits (60), Expect = 2e-024
Identities = 168/209 (80%)
Strand = Plus / Minus
Query: 81 ctgcanaccatatgatgctttctgaatggatcaccaaaatctagcatgcagatgtgcgat 140
||||| ||||| ||||||||||| ||||||||||||||||| | | | || |||| |||
Sbjct: 2064394 ctgcaaaccatctgatgctttctcaatggatcaccaaaatccaacgtataggtgtgtgat 2064335
Query: 141 gatgaggggnnnncaagaggaacttctgatnnatacatgacaagagggttcgaaatgttt 200
| |||||| |||||||||| || ||| |||||| ||||||||||| || ||||
Sbjct: 2064334 ggtgagggaataccaagaggaacctcagatccatacatcacaagagggtttgagtggttt 2064275
Query: 201 gtgacatcataaacatttaccaccaattnctgattgccagctagctgcctnnncnnattt 260
||||||||||||||||| |||||||||| ||| || ||||||| ||| || | ||||
Sbjct: 2064274 gtgacatcataaacattgaccaccaattcctggttaccagctaactgtctcaacaaattt 2064215
Query: 261 tnnactaatgattctacatcaaatgctcc 289
| |||| ||| || ||||||||||||||
Sbjct: 2064214 tctactagtgactccacatcaaatgctcc 2064186
Score = 58.0 bits (29), Expect = 5e-006
Identities = 67/82 (81%)
Strand = Plus / Minus
Query: 3 cccacnagcatacatatgacaaagacaccagatggggtagaaattgcagacnangggaca 62
||||| ||||||||||| |||||||| || ||||| |||| |||||||||| | | |||
Sbjct: 2064563 cccaccagcatacatataacaaagacccctgatggtgtagtaattgcagaccatgaaaca 2064504
Query: 63 tgaggctnnnntctgtatctgc 84
||| ||| |||||||||||
Sbjct: 2064503 tgaagcttgtttctgtatctgc 2064482
>gb|CH401176.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000013 genomic
scaffold, whole genome shotgun sequence
Length = 9810738
Score = 119 bits (60), Expect = 2e-024
Identities = 168/209 (80%)
Strand = Plus / Minus
Query: 81 ctgcanaccatatgatgctttctgaatggatcaccaaaatctagcatgcagatgtgcgat 140
||||| ||||| ||||||||||| ||||||||||||||||| | | | || |||| |||
Sbjct: 2549189 ctgcaaaccatctgatgctttctcaatggatcaccaaaatccaacgtataggtgtgtgat 2549130
Query: 141 gatgaggggnnnncaagaggaacttctgatnnatacatgacaagagggttcgaaatgttt 200
| |||||| |||||||||| || ||| |||||| ||||||||||| || ||||
Sbjct: 2549129 ggtgagggaataccaagaggaacctcagatccatacatcacaagagggtttgagtggttt 2549070
Query: 201 gtgacatcataaacatttaccaccaattnctgattgccagctagctgcctnnncnnattt 260
||||||||||||||||| |||||||||| ||| || ||||||| ||| || | ||||
Sbjct: 2549069 gtgacatcataaacattgaccaccaattcctggttaccagctaactgtctcaacaaattt 2549010
Query: 261 tnnactaatgattctacatcaaatgctcc 289
| |||| ||| || ||||||||||||||
Sbjct: 2549009 tctactagtgactccacatcaaatgctcc 2548981
Score = 58.0 bits (29), Expect = 5e-006
Identities = 67/82 (81%)
Strand = Plus / Minus
Query: 3 cccacnagcatacatatgacaaagacaccagatggggtagaaattgcagacnangggaca 62
||||| ||||||||||| |||||||| || ||||| |||| |||||||||| | | |||
Sbjct: 2549358 cccaccagcatacatataacaaagacccctgatggtgtagtaattgcagaccatgaaaca 2549299
Query: 63 tgaggctnnnntctgtatctgc 84
||| ||| |||||||||||
Sbjct: 2549298 tgaagcttgtttctgtatctgc 2549277
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 119 bits (60), Expect = 2e-024
Identities = 168/209 (80%)
Strand = Plus / Minus
Query: 81 ctgcanaccatatgatgctttctgaatggatcaccaaaatctagcatgcagatgtgcgat 140
||||| ||||| ||||||||||| ||||||||||||||||| | | | || |||| |||
Sbjct: 29815352 ctgcaaaccatctgatgctttctcaatggatcaccaaaatccaacgtataggtgtgtgat 29815293
Query: 141 gatgaggggnnnncaagaggaacttctgatnnatacatgacaagagggttcgaaatgttt 200
| |||||| |||||||||| || ||| |||||| ||||||||||| || ||||
Sbjct: 29815292 ggtgagggaataccaagaggaacctcagatccatacatcacaagagggtttgagtggttt 29815233
Query: 201 gtgacatcataaacatttaccaccaattnctgattgccagctagctgcctnnncnnattt 260
||||||||||||||||| |||||||||| ||| || ||||||| ||| || | ||||
Sbjct: 29815232 gtgacatcataaacattgaccaccaattcctggttaccagctaactgtctcaacaaattt 29815173
Query: 261 tnnactaatgattctacatcaaatgctcc 289
| |||| ||| || ||||||||||||||
Sbjct: 29815172 tctactagtgactccacatcaaatgctcc 29815144
Score = 58.0 bits (29), Expect = 5e-006
Identities = 67/82 (81%)
Strand = Plus / Minus
Query: 3 cccacnagcatacatatgacaaagacaccagatggggtagaaattgcagacnangggaca 62
||||| ||||||||||| |||||||| || ||||| |||| |||||||||| | | |||
Sbjct: 29815521 cccaccagcatacatataacaaagacccctgatggtgtagtaattgcagaccatgaaaca 29815462
Query: 63 tgaggctnnnntctgtatctgc 84
||| ||| |||||||||||
Sbjct: 29815461 tgaagcttgtttctgtatctgc 29815440
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 119 bits (60), Expect = 2e-024
Identities = 168/209 (80%)
Strand = Plus / Minus
Query: 81 ctgcanaccatatgatgctttctgaatggatcaccaaaatctagcatgcagatgtgcgat 140
||||| ||||| ||||||||||| ||||||||||||||||| | | | || |||| |||
Sbjct: 28850651 ctgcaaaccatctgatgctttctcaatggatcaccaaaatccaacgtataggtgtgtgat 28850592
Query: 141 gatgaggggnnnncaagaggaacttctgatnnatacatgacaagagggttcgaaatgttt 200
| |||||| |||||||||| || ||| |||||| ||||||||||| || ||||
Sbjct: 28850591 ggtgagggaataccaagaggaacctcagatccatacatcacaagagggtttgagtggttt 28850532
Query: 201 gtgacatcataaacatttaccaccaattnctgattgccagctagctgcctnnncnnattt 260
||||||||||||||||| |||||||||| ||| || ||||||| ||| || | ||||
Sbjct: 28850531 gtgacatcataaacattgaccaccaattcctggttaccagctaactgtctcaacaaattt 28850472
Query: 261 tnnactaatgattctacatcaaatgctcc 289
| |||| ||| || ||||||||||||||
Sbjct: 28850471 tctactagtgactccacatcaaatgctcc 28850443
Score = 58.0 bits (29), Expect = 5e-006
Identities = 67/82 (81%)
Strand = Plus / Minus
Query: 3 cccacnagcatacatatgacaaagacaccagatggggtagaaattgcagacnangggaca 62
||||| ||||||||||| |||||||| || ||||| |||| |||||||||| | | |||
Sbjct: 28850820 cccaccagcatacatataacaaagacccctgatggtgtagtaattgcagaccatgaaaca 28850761
Query: 63 tgaggctnnnntctgtatctgc 84
||| ||| |||||||||||
Sbjct: 28850760 tgaagcttgtttctgtatctgc 28850739
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 119 bits (60), Expect = 2e-024
Identities = 168/209 (80%)
Strand = Plus / Minus
Query: 81 ctgcanaccatatgatgctttctgaatggatcaccaaaatctagcatgcagatgtgcgat 140
||||| ||||| ||||||||||| ||||||||||||||||| | | | || |||| |||
Sbjct: 28759327 ctgcaaaccatctgatgctttctcaatggatcaccaaaatccaacgtataggtgtgtgat 28759268
Query: 141 gatgaggggnnnncaagaggaacttctgatnnatacatgacaagagggttcgaaatgttt 200
| |||||| |||||||||| || ||| |||||| ||||||||||| || ||||
Sbjct: 28759267 ggtgagggaataccaagaggaacctcagatccatacatcacaagagggtttgagtggttt 28759208
Query: 201 gtgacatcataaacatttaccaccaattnctgattgccagctagctgcctnnncnnattt 260
||||||||||||||||| |||||||||| ||| || ||||||| ||| || | ||||
Sbjct: 28759207 gtgacatcataaacattgaccaccaattcctggttaccagctaactgtctcaacaaattt 28759148
Query: 261 tnnactaatgattctacatcaaatgctcc 289
| |||| ||| || ||||||||||||||
Sbjct: 28759147 tctactagtgactccacatcaaatgctcc 28759119
Score = 58.0 bits (29), Expect = 5e-006
Identities = 67/82 (81%)
Strand = Plus / Minus
Query: 3 cccacnagcatacatatgacaaagacaccagatggggtagaaattgcagacnangggaca 62
||||| ||||||||||| |||||||| || ||||| |||| |||||||||| | | |||
Sbjct: 28759496 cccaccagcatacatataacaaagacccctgatggtgtagtaattgcagaccatgaaaca 28759437
Query: 63 tgaggctnnnntctgtatctgc 84
||| ||| |||||||||||
Sbjct: 28759436 tgaagcttgtttctgtatctgc 28759415
>gb|AQ272632.1|AQ272632 nbxb0028G04r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0028G04r, DNA sequence
Length = 618
Score = 63.9 bits (32), Expect = 9e-008
Identities = 109/137 (79%)
Strand = Plus / Plus
Query: 81 ctgcanaccatatgatgctttctgaatggatcaccaaaatctagcatgcagatgtgcgat 140
||||| ||||| ||||||||||| ||||||||||||||||| | | | | |||| |||
Sbjct: 314 ctgcaaaccatctgatgctttctcaatggatcaccaaaatccaacgtataagtgtgtgat 373
Query: 141 gatgaggggnnnncaagaggaacttctgatnnatacatgacaagagggttcgaaatgttt 200
| |||||| |||||||||| || ||| |||||| ||||||||||| || ||||
Sbjct: 374 ggtgagggaataccaagaggaacctcagatccatacatcacaagagggtttgagtggttt 433
Query: 201 gtgacatcataaacatt 217
|||||| |||||||||
Sbjct: 434 gtgacacaataaacatt 450
Score = 58.0 bits (29), Expect = 5e-006
Identities = 67/82 (81%)
Strand = Plus / Plus
Query: 3 cccacnagcatacatatgacaaagacaccagatggggtagaaattgcagacnangggaca 62
||||| ||||||||||| |||||||| || ||||| |||| |||||||||| | | |||
Sbjct: 145 cccaccagcatacatataacaaagacccctgatggtgtagtaattgcagaccatgaaaca 204
Query: 63 tgaggctnnnntctgtatctgc 84
||| ||| |||||||||||
Sbjct: 205 tgaagcttgtttctgtatctgc 226
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 293,308
Number of Sequences: 438736
Number of extensions: 293308
Number of successful extensions: 4708
Number of sequences better than 0.5: 11
Number of HSP's better than 0.5 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4632
Number of HSP's gapped (non-prelim): 76
length of query: 557
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 536
effective length of database: 2,791,206,460
effective search space: 1496086662560
effective search space used: 1496086662560
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)