BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAS4c05.yg.2.1
(318 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AC091090.1|AC091090 Oryza sativa (japonica cultivar-grou... 159 1e-036
dbj|AK121341.1| Oryza sativa (japonica cultivar-group) cDNA... 159 1e-036
gb|AACV01002933.1| Oryza sativa (japonica cultivar-group) c... 159 1e-036
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 159 1e-036
ref|XM_463619.1| Oryza sativa (japonica cultivar-group), p... 159 1e-036
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 159 1e-036
dbj|AP003437.3| Oryza sativa (japonica cultivar-group) geno... 159 1e-036
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 159 1e-036
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 159 1e-036
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 159 1e-036
dbj|D45890.1|RICSPS1 Oryza sativa DNA for sucrose phosphate... 153 7e-035
>gb|AC091090.1|AC091090 Oryza sativa (japonica cultivar-group) chromosome 1 clone P0678F11, ***
SEQUENCING IN PROGRESS ***, 3 ordered pieces
Length = 155574
Score = 159 bits (80), Expect = 1e-036
Identities = 160/190 (84%)
Strand = Plus / Minus
Query: 1 acacctcgctgccgctgccacagatgagggcgtcgaagtcggnngctgggatcttgccga 60
||||||||||||||||||| |||||||| ||||||||||||| | |||||||||||| |
Sbjct: 116654 acacctcgctgccgctgccgcagatgagcgcgtcgaagtcggtcggtgggatcttgccca 116595
Query: 61 gctgcagaagctggagtgtctcggacaacggcatggcannngacagcgtgaaccctgaga 120
|||||||||||| ||| ||||| | || |||||| || ||||||| |||||| ||||
Sbjct: 116594 gctgcagaagcttgagcgtctccggcagcggcatcgccgtcgacagcgcgaacccggaga 116535
Query: 121 tcttgaacatctgggagtccgatcggactnnnctgaaaacttcctngatcacctgcanca 180
|| || |||||||||||||||| ||||| ||||| || |||| ||||||||||| ||
Sbjct: 116534 tcctggacatctgggagtccgaccggacagccctgaacacctcctggatcacctgcagca 116475
Query: 181 tcttcttgct 190
|| |||||||
Sbjct: 116474 tcctcttgct 116465
>dbj|AK121341.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023120M11, full
insert sequence
Length = 3825
Score = 159 bits (80), Expect = 1e-036
Identities = 160/190 (84%)
Strand = Plus / Minus
Query: 1 acacctcgctgccgctgccacagatgagggcgtcgaagtcggnngctgggatcttgccga 60
||||||||||||||||||| |||||||| ||||||||||||| | |||||||||||| |
Sbjct: 2858 acacctcgctgccgctgccgcagatgagcgcgtcgaagtcggtcggtgggatcttgccca 2799
Query: 61 gctgcagaagctggagtgtctcggacaacggcatggcannngacagcgtgaaccctgaga 120
|||||||||||| ||| ||||| | || |||||| || ||||||| |||||| ||||
Sbjct: 2798 gctgcagaagcttgagcgtctccggcagcggcatcgccgtcgacagcgcgaacccggaga 2739
Query: 121 tcttgaacatctgggagtccgatcggactnnnctgaaaacttcctngatcacctgcanca 180
|| || |||||||||||||||| ||||| ||||| || |||| ||||||||||| ||
Sbjct: 2738 tcctggacatctgggagtccgaccggacagccctgaacacctcctggatcacctgcagca 2679
Query: 181 tcttcttgct 190
|| |||||||
Sbjct: 2678 tcctcttgct 2669
>gb|AACV01002933.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002933, whole
genome shotgun sequence
Length = 31042
Score = 159 bits (80), Expect = 1e-036
Identities = 160/190 (84%)
Strand = Plus / Minus
Query: 1 acacctcgctgccgctgccacagatgagggcgtcgaagtcggnngctgggatcttgccga 60
||||||||||||||||||| |||||||| ||||||||||||| | |||||||||||| |
Sbjct: 11906 acacctcgctgccgctgccgcagatgagcgcgtcgaagtcggtcggtgggatcttgccca 11847
Query: 61 gctgcagaagctggagtgtctcggacaacggcatggcannngacagcgtgaaccctgaga 120
|||||||||||| ||| ||||| | || |||||| || ||||||| |||||| ||||
Sbjct: 11846 gctgcagaagcttgagcgtctccggcagcggcatcgccgtcgacagcgcgaacccggaga 11787
Query: 121 tcttgaacatctgggagtccgatcggactnnnctgaaaacttcctngatcacctgcanca 180
|| || |||||||||||||||| ||||| ||||| || |||| ||||||||||| ||
Sbjct: 11786 tcctggacatctgggagtccgaccggacagccctgaacacctcctggatcacctgcagca 11727
Query: 181 tcttcttgct 190
|| |||||||
Sbjct: 11726 tcctcttgct 11717
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 159 bits (80), Expect = 1e-036
Identities = 160/190 (84%)
Strand = Plus / Plus
Query: 1 acacctcgctgccgctgccacagatgagggcgtcgaagtcggnngctgggatcttgccga 60
||||||||||||||||||| |||||||| ||||||||||||| | |||||||||||| |
Sbjct: 40176507 acacctcgctgccgctgccgcagatgagcgcgtcgaagtcggtcggtgggatcttgccca 40176566
Query: 61 gctgcagaagctggagtgtctcggacaacggcatggcannngacagcgtgaaccctgaga 120
|||||||||||| ||| ||||| | || |||||| || ||||||| |||||| ||||
Sbjct: 40176567 gctgcagaagcttgagcgtctccggcagcggcatcgccgtcgacagcgcgaacccggaga 40176626
Query: 121 tcttgaacatctgggagtccgatcggactnnnctgaaaacttcctngatcacctgcanca 180
|| || |||||||||||||||| ||||| ||||| || |||| ||||||||||| ||
Sbjct: 40176627 tcctggacatctgggagtccgaccggacagccctgaacacctcctggatcacctgcagca 40176686
Query: 181 tcttcttgct 190
|| |||||||
Sbjct: 40176687 tcctcttgct 40176696
>ref|XM_463619.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 3303
Score = 159 bits (80), Expect = 1e-036
Identities = 160/190 (84%)
Strand = Plus / Minus
Query: 1 acacctcgctgccgctgccacagatgagggcgtcgaagtcggnngctgggatcttgccga 60
||||||||||||||||||| |||||||| ||||||||||||| | |||||||||||| |
Sbjct: 2674 acacctcgctgccgctgccgcagatgagcgcgtcgaagtcggtcggtgggatcttgccca 2615
Query: 61 gctgcagaagctggagtgtctcggacaacggcatggcannngacagcgtgaaccctgaga 120
|||||||||||| ||| ||||| | || |||||| || ||||||| |||||| ||||
Sbjct: 2614 gctgcagaagcttgagcgtctccggcagcggcatcgccgtcgacagcgcgaacccggaga 2555
Query: 121 tcttgaacatctgggagtccgatcggactnnnctgaaaacttcctngatcacctgcanca 180
|| || |||||||||||||||| ||||| ||||| || |||| ||||||||||| ||
Sbjct: 2554 tcctggacatctgggagtccgaccggacagccctgaacacctcctggatcacctgcagca 2495
Query: 181 tcttcttgct 190
|| |||||||
Sbjct: 2494 tcctcttgct 2485
>ref|NT_079927.2| Oryza sativa (japonica cultivar-group)
Length = 14818989
Score = 159 bits (80), Expect = 1e-036
Identities = 160/190 (84%)
Strand = Plus / Plus
Query: 1 acacctcgctgccgctgccacagatgagggcgtcgaagtcggnngctgggatcttgccga 60
||||||||||||||||||| |||||||| ||||||||||||| | |||||||||||| |
Sbjct: 14623890 acacctcgctgccgctgccgcagatgagcgcgtcgaagtcggtcggtgggatcttgccca 14623949
Query: 61 gctgcagaagctggagtgtctcggacaacggcatggcannngacagcgtgaaccctgaga 120
|||||||||||| ||| ||||| | || |||||| || ||||||| |||||| ||||
Sbjct: 14623950 gctgcagaagcttgagcgtctccggcagcggcatcgccgtcgacagcgcgaacccggaga 14624009
Query: 121 tcttgaacatctgggagtccgatcggactnnnctgaaaacttcctngatcacctgcanca 180
|| || |||||||||||||||| ||||| ||||| || |||| ||||||||||| ||
Sbjct: 14624010 tcctggacatctgggagtccgaccggacagccctgaacacctcctggatcacctgcagca 14624069
Query: 181 tcttcttgct 190
|| |||||||
Sbjct: 14624070 tcctcttgct 14624079
>dbj|AP003437.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0678F11
Length = 154292
Score = 159 bits (80), Expect = 1e-036
Identities = 160/190 (84%)
Strand = Plus / Plus
Query: 1 acacctcgctgccgctgccacagatgagggcgtcgaagtcggnngctgggatcttgccga 60
||||||||||||||||||| |||||||| ||||||||||||| | |||||||||||| |
Sbjct: 38921 acacctcgctgccgctgccgcagatgagcgcgtcgaagtcggtcggtgggatcttgccca 38980
Query: 61 gctgcagaagctggagtgtctcggacaacggcatggcannngacagcgtgaaccctgaga 120
|||||||||||| ||| ||||| | || |||||| || ||||||| |||||| ||||
Sbjct: 38981 gctgcagaagcttgagcgtctccggcagcggcatcgccgtcgacagcgcgaacccggaga 39040
Query: 121 tcttgaacatctgggagtccgatcggactnnnctgaaaacttcctngatcacctgcanca 180
|| || |||||||||||||||| ||||| ||||| || |||| ||||||||||| ||
Sbjct: 39041 tcctggacatctgggagtccgaccggacagccctgaacacctcctggatcacctgcagca 39100
Query: 181 tcttcttgct 190
|| |||||||
Sbjct: 39101 tcctcttgct 39110
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 159 bits (80), Expect = 1e-036
Identities = 160/190 (84%)
Strand = Plus / Plus
Query: 1 acacctcgctgccgctgccacagatgagggcgtcgaagtcggnngctgggatcttgccga 60
||||||||||||||||||| |||||||| ||||||||||||| | |||||||||||| |
Sbjct: 14384128 acacctcgctgccgctgccgcagatgagcgcgtcgaagtcggtcggtgggatcttgccca 14384187
Query: 61 gctgcagaagctggagtgtctcggacaacggcatggcannngacagcgtgaaccctgaga 120
|||||||||||| ||| ||||| | || |||||| || ||||||| |||||| ||||
Sbjct: 14384188 gctgcagaagcttgagcgtctccggcagcggcatcgccgtcgacagcgcgaacccggaga 14384247
Query: 121 tcttgaacatctgggagtccgatcggactnnnctgaaaacttcctngatcacctgcanca 180
|| || |||||||||||||||| ||||| ||||| || |||| ||||||||||| ||
Sbjct: 14384248 tcctggacatctgggagtccgaccggacagccctgaacacctcctggatcacctgcagca 14384307
Query: 181 tcttcttgct 190
|| |||||||
Sbjct: 14384308 tcctcttgct 14384317
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 159 bits (80), Expect = 1e-036
Identities = 160/190 (84%)
Strand = Plus / Plus
Query: 1 acacctcgctgccgctgccacagatgagggcgtcgaagtcggnngctgggatcttgccga 60
||||||||||||||||||| |||||||| ||||||||||||| | |||||||||||| |
Sbjct: 39585849 acacctcgctgccgctgccgcagatgagcgcgtcgaagtcggtcggtgggatcttgccca 39585908
Query: 61 gctgcagaagctggagtgtctcggacaacggcatggcannngacagcgtgaaccctgaga 120
|||||||||||| ||| ||||| | || |||||| || ||||||| |||||| ||||
Sbjct: 39585909 gctgcagaagcttgagcgtctccggcagcggcatcgccgtcgacagcgcgaacccggaga 39585968
Query: 121 tcttgaacatctgggagtccgatcggactnnnctgaaaacttcctngatcacctgcanca 180
|| || |||||||||||||||| ||||| ||||| || |||| ||||||||||| ||
Sbjct: 39585969 tcctggacatctgggagtccgaccggacagccctgaacacctcctggatcacctgcagca 39586028
Query: 181 tcttcttgct 190
|| |||||||
Sbjct: 39586029 tcctcttgct 39586038
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 159 bits (80), Expect = 1e-036
Identities = 160/190 (84%)
Strand = Plus / Plus
Query: 1 acacctcgctgccgctgccacagatgagggcgtcgaagtcggnngctgggatcttgccga 60
||||||||||||||||||| |||||||| ||||||||||||| | |||||||||||| |
Sbjct: 40095837 acacctcgctgccgctgccgcagatgagcgcgtcgaagtcggtcggtgggatcttgccca 40095896
Query: 61 gctgcagaagctggagtgtctcggacaacggcatggcannngacagcgtgaaccctgaga 120
|||||||||||| ||| ||||| | || |||||| || ||||||| |||||| ||||
Sbjct: 40095897 gctgcagaagcttgagcgtctccggcagcggcatcgccgtcgacagcgcgaacccggaga 40095956
Query: 121 tcttgaacatctgggagtccgatcggactnnnctgaaaacttcctngatcacctgcanca 180
|| || |||||||||||||||| ||||| ||||| || |||| ||||||||||| ||
Sbjct: 40095957 tcctggacatctgggagtccgaccggacagccctgaacacctcctggatcacctgcagca 40096016
Query: 181 tcttcttgct 190
|| |||||||
Sbjct: 40096017 tcctcttgct 40096026
>dbj|D45890.1|RICSPS1 Oryza sativa DNA for sucrose phosphate synthase, complete cds
Length = 9181
Score = 153 bits (77), Expect = 7e-035
Identities = 159/190 (83%)
Strand = Plus / Minus
Query: 1 acacctcgctgccgctgccacagatgagggcgtcgaagtcggnngctgggatcttgccga 60
||||||||||||||||||| |||||||| ||||||||||||| | |||||||||||| |
Sbjct: 7500 acacctcgctgccgctgccgcagatgagcgcgtcgaagtcggtcggtgggatcttgccca 7441
Query: 61 gctgcagaagctggagtgtctcggacaacggcatggcannngacagcgtgaaccctgaga 120
|||||||||||| ||| ||||| | || |||||| | ||||||| |||||| ||||
Sbjct: 7440 gctgcagaagcttgagcgtctccggcagcggcatcnccgtcgacagcgcgaacccggaga 7381
Query: 121 tcttgaacatctgggagtccgatcggactnnnctgaaaacttcctngatcacctgcanca 180
|| || |||||||||||||||| ||||| ||||| || |||| ||||||||||| ||
Sbjct: 7380 tcctggacatctgggagtccgaccggacagccctgaacacctcctggatcacctgcagca 7321
Query: 181 tcttcttgct 190
|| |||||||
Sbjct: 7320 tcctcttgct 7311
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 208,955
Number of Sequences: 438736
Number of extensions: 208955
Number of successful extensions: 5421
Number of sequences better than 0.5: 11
Number of HSP's better than 0.5 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5338
Number of HSP's gapped (non-prelim): 83
length of query: 318
length of database: 2,800,419,916
effective HSP length: 20
effective length of query: 298
effective length of database: 2,791,645,196
effective search space: 831910268408
effective search space used: 831910268408
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)