BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAS2h09.yg.3.5
(1992 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|AJ495784.1|OSA495784 Oryza sativa (japonica cultivar-gr... 900 0.0
dbj|AK111821.1| Oryza sativa (japonica cultivar-group) cDNA... 884 0.0
dbj|AK104345.1| Oryza sativa (japonica cultivar-group) cDNA... 876 0.0
dbj|AK099636.1| Oryza sativa (japonica cultivar-group) cDNA... 862 0.0
gb|CB656567.1|CB656567 OSJNEc11B07.f OSJNEc Oryza sativa (j... 644 0.0
gb|AC137621.2| Oryza sativa (japonica cultivar-group) chrom... 543 e-151
gb|AACV01010857.1| Oryza sativa (japonica cultivar-group) c... 543 e-151
ref|NT_107216.1| Oryza sativa (japonica cultivar-group) 543 e-151
gb|CH401191.1| Oryza sativa (japonica cultivar-group) chrom... 543 e-151
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 543 e-151
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 543 e-151
gb|AQ861558.1|AQ861558 nbeb0017G17f CUGI Rice BAC Library (... 446 e-122
dbj|AK111803.1| Oryza sativa (japonica cultivar-group) cDNA... 365 6e-098
ref|XM_462838.1| Oryza sativa (japonica cultivar-group), p... 365 6e-098
emb|AJ495786.1|OSA495786 Oryza sativa (japonica cultivar-gr... 357 2e-095
gb|AU083547.1|AU083547 AU083547 Rice green shoot Oryza sati... 309 3e-081
gb|AQ330326.1|AQ330326 nbxb0046P02f CUGI Rice BAC Library O... 254 2e-064
gb|CF276098.1|CF276098 14ETL--01-B22.b1 Rice etiolated leaf... 254 2e-064
gb|AQ256517.1|AQ256517 nbxb0016M14f CUGI Rice BAC Library O... 238 1e-059
gb|AU083548.1|AU083548 AU083548 Rice green shoot Oryza sati... 206 3e-050
gb|D48692.1|D48692 RICS15068A Rice green shoot Oryza sativa... 202 5e-049
gb|CF276099.1|CF276099 14ETL--01-B22.g1 Rice etiolated leaf... 198 8e-048
gb|AU183315.1|AU183315 AU183315 Rice cDNA from immature lea... 182 5e-043
gb|AQ050675.1|AQ050675 nbxb0004cA07f CUGI Rice BAC Library ... 174 1e-040
dbj|AP003018.2| Oryza sativa (japonica cultivar-group) geno... 174 1e-040
gb|AACV01000735.1| Oryza sativa (japonica cultivar-group) c... 174 1e-040
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 174 1e-040
ref|NT_036323.3| Oryza sativa (japonica cultivar-group) 174 1e-040
dbj|AP003020.2| Oryza sativa (japonica cultivar-group) geno... 174 1e-040
gb|CH401164.1| Oryza sativa (japonica cultivar-group) chrom... 174 1e-040
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 174 1e-040
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 174 1e-040
ref|XM_470673.1| Oryza sativa (japonica cultivar-group), mRNA 167 3e-038
gb|D48383.1|D48383 RICS14555A Rice green shoot Oryza sativa... 161 2e-036
gb|CB643957.1|CB643957 OSJNEb04P04.f OSJNEb Oryza sativa (j... 149 7e-033
ref|NM_193128.1| Oryza sativa (japonica cultivar-group), mRNA 149 7e-033
gb|D42008.1|D42008 RICS5087A Rice shoot Oryza sativa (japon... 131 2e-027
gb|AU096634.1|AU096634 AU096634 Rice green shoot Oryza sati... 127 3e-026
gb|D40175.1|D40175 RICS1959A Rice shoot Oryza sativa (japon... 115 1e-022
gb|C73089.1|C73089 C73089 Rice panicle at flowering stage O... 115 1e-022
gb|AQ287492.1|AQ287492 nbxb0030K04r CUGI Rice BAC Library O... 94 4e-016
gb|AQ329740.1|AQ329740 nbxb0045L21r CUGI Rice BAC Library O... 94 4e-016
gb|AQ051267.1|AQ051267 nbxb0001cF08f CUGI Rice BAC Library ... 94 4e-016
gb|AU163067.1|AU163067 AU163067 Rice green shoot Oryza sati... 94 4e-016
gb|AACV01016862.1| Oryza sativa (japonica cultivar-group) c... 94 4e-016
dbj|AP004334.2| Oryza sativa (japonica cultivar-group) geno... 94 4e-016
dbj|AP003752.3| Oryza sativa (japonica cultivar-group) geno... 94 4e-016
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 94 4e-016
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 94 4e-016
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 94 4e-016
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 94 4e-016
gb|AC087220.9| Oryza sativa chromosome 3 BAC OSJNBb0097F01 ... 84 3e-013
gb|AACV01006722.1| Oryza sativa (japonica cultivar-group) c... 84 3e-013
ref|NT_079854.2| Oryza sativa (japonica cultivar-group) 84 3e-013
gb|CH401174.1| Oryza sativa (japonica cultivar-group) chrom... 84 3e-013
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 84 3e-013
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 84 3e-013
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 84 3e-013
gb|AQ688548.1|AQ688548 nbxb0077J20f CUGI Rice BAC Library O... 82 1e-012
gb|AQ255921.1|AQ255921 nbxb0014H01r CUGI Rice BAC Library O... 78 2e-011
gb|AU097474.1|AU097474 AU097474 Rice shoot Oryza sativa (ja... 74 3e-010
ref|NM_193333.1| Oryza sativa (japonica cultivar-group), p... 74 3e-010
gb|AU085934.1|AU085934 AU085934 Rice panicle at flowering s... 72 1e-009
gb|AACV01001493.1| Oryza sativa (japonica cultivar-group) c... 70 5e-009
ref|NT_079926.2| Oryza sativa (japonica cultivar-group) 70 5e-009
dbj|AP004231.3| Oryza sativa (japonica cultivar-group) geno... 70 5e-009
dbj|AP004232.4| Oryza sativa (japonica cultivar-group) geno... 70 5e-009
gb|CH401166.1| Oryza sativa (japonica cultivar-group) chrom... 70 5e-009
gb|D47363.1|D47363 RICS12691A Rice green shoot Oryza sativa... 68 2e-008
dbj|AK111782.1| Oryza sativa (japonica cultivar-group) cDNA... 68 2e-008
gb|CV720744.1|CV720744 YBH--01-L04.b1 Rice before heading y... 64 3e-007
gb|BP184381.1|BP184381 BP184381 pNS rice panicle cDNA, germ... 64 3e-007
ref|NM_191687.1| Oryza sativa (japonica cultivar-group), p... 64 3e-007
gb|C74144.1|C74144 C74144 Rice panicle shorter than 3cm Ory... 62 1e-006
gb|AU081563.1|AU081563 AU081563 Rice panicle shorter than 3... 62 1e-006
dbj|AK107483.1| Oryza sativa (japonica cultivar-group) cDNA... 62 1e-006
dbj|AP005527.3| Oryza sativa (japonica cultivar-group) geno... 62 1e-006
dbj|AP005619.3| Oryza sativa (japonica cultivar-group) geno... 62 1e-006
gb|AACV01013461.1| Oryza sativa (japonica cultivar-group) c... 62 1e-006
ref|NT_079873.2| Oryza sativa (japonica cultivar-group) 62 1e-006
gb|CH401209.1| Oryza sativa (japonica cultivar-group) chrom... 62 1e-006
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 62 1e-006
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 62 1e-006
gb|AU082324.1|AU082324 AU082324 Rice panicle (longer than 1... 60 5e-006
gb|AU094689.1|AU094689 AU094689 Rice panicle (longer than 1... 60 5e-006
gb|BP184885.1|BP184885 BP184885 pNS rice callus cDNA Oryza ... 60 5e-006
ref|NM_192221.1| Oryza sativa (japonica cultivar-group), p... 58 2e-005
gb|AACV01002173.1| Oryza sativa (japonica cultivar-group) c... 54 3e-004
gb|AACV01016284.1| Oryza sativa (japonica cultivar-group) c... 54 3e-004
ref|NM_187376.1| Oryza sativa (japonica cultivar-group), mRNA 54 3e-004
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 54 3e-004
dbj|AP004259.2| Oryza sativa (japonica cultivar-group) geno... 54 3e-004
dbj|AP004006.5| Oryza sativa (japonica cultivar-group) geno... 54 3e-004
dbj|AP003245.4| Oryza sativa (japonica cultivar-group) geno... 54 3e-004
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 54 3e-004
gb|D47255.1|D47255 RICS12518A Rice green shoot Oryza sativa... 52 0.001
gb|C74379.1|C74379 C74379 Rice panicle shorter than 3cm Ory... 52 0.001
gb|AACV01002207.1| Oryza sativa (japonica cultivar-group) c... 52 0.001
dbj|AP002901.2| Oryza sativa (japonica cultivar-group) geno... 52 0.001
dbj|AP002912.2| Oryza sativa (japonica cultivar-group) geno... 50 0.005
gb|AY459343.1| Oryza sativa (japonica cultivar-group) clone... 50 0.005
gb|AACV01000256.1| Oryza sativa (japonica cultivar-group) c... 50 0.005
dbj|AP003339.4| Oryza sativa (japonica cultivar-group) geno... 50 0.005
ref|XM_462803.1| Oryza sativa (japonica cultivar-group), p... 50 0.005
ref|XM_550262.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.005
ref|NT_036312.3| Oryza sativa (japonica cultivar-group) 50 0.005
gb|AF474141.1| Oryza sativa typical A-type R2R3 Myb protein... 46 0.074
dbj|AK066834.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.074
dbj|AK099108.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.074
dbj|AK104053.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.074
gb|AC137267.2| Genomic sequence for Oryza sativa, Nipponbar... 46 0.074
gb|AACV01006437.1| Oryza sativa (japonica cultivar-group) c... 46 0.074
ref|XM_475269.1| Oryza sativa (japonica cultivar-group), p... 46 0.074
ref|NT_107192.1| Oryza sativa (japonica cultivar-group) 46 0.074
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.074
gb|AQ160956.1|AQ160956 nbxb0006A18r CUGI Rice BAC Library O... 44 0.29
gb|AQ509965.1|AQ509965 nbxb0094H15r CUGI Rice BAC Library O... 44 0.29
gb|AQ843016.1|AQ843016 nbxb0001P18r CUGI Rice BAC Library O... 44 0.29
gb|DU133704.1|DU133704 UCDRGT2793_5.1 UCD RGT Rice Insertio... 44 0.29
gb|AY873246.1|AY873246 04ET3_013_I_007_019_029C07 Oryza sat... 44 0.29
dbj|AP005012.3| Oryza sativa (japonica cultivar-group) geno... 44 0.29
gb|AC133450.6| Oryza sativa chromosome 3 BAC OSJNBa0072F13 ... 44 0.29
gb|AC118285.2| Oryza sativa (japonica cultivar-group) chrom... 44 0.29
gb|AC098833.2| Oryza sativa (japonica cultivar-group) chrom... 44 0.29
gb|AACV01005439.1| Oryza sativa (japonica cultivar-group) c... 44 0.29
gb|AACV01008001.1| Oryza sativa (japonica cultivar-group) c... 44 0.29
gb|AACV01012646.1| Oryza sativa (japonica cultivar-group) c... 44 0.29
ref|XM_467854.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.29
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 44 0.29
ref|NT_107187.1| Oryza sativa (japonica cultivar-group) 44 0.29
ref|NT_107219.1| Oryza sativa (japonica cultivar-group) 44 0.29
gb|CH401206.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.29
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.29
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.29
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.29
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 44 0.29
gb|AU082155.1|AU082155 AU082155 Rice root Oryza sativa (jap... 42 1.1
gb|AU082166.1|AU082166 AU082166 Rice cDNA from young root O... 42 1.1
gb|AU183276.1|AU183276 AU183276 Rice cDNA from immature lea... 42 1.1
gb|CB653197.1|CB653197 OSJNEc04A04.f OSJNEc Oryza sativa (j... 42 1.1
dbj|AP004813.1| Oryza sativa (japonica cultivar-group) chro... 42 1.1
dbj|AP005070.1| Oryza sativa (japonica cultivar-group) chro... 42 1.1
dbj|AK060684.1| Oryza sativa (japonica cultivar-group) cDNA... 42 1.1
dbj|AK112018.1| Oryza sativa (japonica cultivar-group) cDNA... 42 1.1
dbj|AK112056.1| Oryza sativa (japonica cultivar-group) cDNA... 42 1.1
dbj|AP006523.2| Oryza sativa (japonica cultivar-group) geno... 42 1.1
ref|NT_107235.1| Oryza sativa (japonica cultivar-group) 42 1.1
dbj|AP006616.2| Oryza sativa (japonica cultivar-group) geno... 42 1.1
gb|AACV01004944.1| Oryza sativa (japonica cultivar-group) c... 42 1.1
gb|AACV01012232.1| Oryza sativa (japonica cultivar-group) c... 42 1.1
gb|AACV01014981.1| Oryza sativa (japonica cultivar-group) c... 42 1.1
ref|NM_190827.1| Oryza sativa (japonica cultivar-group), p... 42 1.1
ref|XM_466825.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.1
ref|XM_483665.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.1
ref|NT_107212.1| Oryza sativa (japonica cultivar-group) 42 1.1
gb|AC130600.3| Oryza sativa (japonica cultivar-group) chrom... 42 1.1
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 42 1.1
gb|C73695.1|C73695 C73695 Rice panicle (longer than 10cm) O... 40 4.5
gb|C74411.2|C74411 C74411 Rice panicle shorter than 3cm Ory... 40 4.5
dbj|AP003922.2| Oryza sativa (japonica cultivar-group) geno... 40 4.5
dbj|AK108709.1| Oryza sativa (japonica cultivar-group) cDNA... 40 4.5
gb|AY459335.1| Oryza sativa (japonica cultivar-group) clone... 40 4.5
dbj|AP005319.3| Oryza sativa (japonica cultivar-group) geno... 40 4.5
dbj|AP003022.2| Oryza sativa (japonica cultivar-group) geno... 40 4.5
gb|AACV01001778.1| Oryza sativa (japonica cultivar-group) c... 40 4.5
gb|AACV01002776.1| Oryza sativa (japonica cultivar-group) c... 40 4.5
gb|AACV01005240.1| Oryza sativa (japonica cultivar-group) c... 40 4.5
gb|AACV01005346.1| Oryza sativa (japonica cultivar-group) c... 40 4.5
ref|XM_467636.1| Oryza sativa (japonica cultivar-group), mRNA 40 4.5
dbj|AP003994.3| Oryza sativa (japonica cultivar-group) geno... 40 4.5
dbj|AP004669.3| Oryza sativa (japonica cultivar-group) geno... 40 4.5
dbj|AP003297.3| Oryza sativa (japonica cultivar-group) geno... 40 4.5
dbj|AP003330.4| Oryza sativa (japonica cultivar-group) geno... 40 4.5
>emb|AJ495784.1|OSA495784 Oryza sativa (japonica cultivar-group) mRNA for MYB16 protein
Length = 1925
Score = 900 bits (454), Expect = 0.0
Identities = 790/902 (87%)
Strand = Plus / Plus
Query: 231 agctcccaggttctgcattgcgttgagatggggaggcattcttgctgctacaagcagaag 290
|||||| |||| ||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 268 agctccgaggtcctgcattgcactgaaatggggaggcattcttgctgctacaagcagaaa 327
Query: 291 ctgagaaaggggctctggtcccctgaggaggatgagaaactcatgaatcacataacaaag 350
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 328 ttgaggaaggggctctggtcccctgaggaggatgagaagctcatgaatcacataaccaag 387
Query: 351 catggccatggctgctggagctctgttcccaaactcgctgggcttcaaaggtgcggaaag 410
|||||||||||||||||||| |||||||| ||||| || ||||| ||||||||||| |||
Sbjct: 388 catggccatggctgctggagttctgttcctaaacttgcagggctccaaaggtgcggcaag 447
Query: 411 agttgtaggctgaggtggataaactatctgaggccagacctcaagagaggggcattcgcc 470
|| || ||||||||||||||||||||||||||||| |||||||||||||| |||||| |
Sbjct: 448 agctgcaggctgaggtggataaactatctgaggcctgacctcaagagaggtgcattctct 507
Query: 471 caagacgaagaagacctcatcatcgagctgcacgctgtcctcgggaacaggtggtctcaa 530
|| || ||||||||||||||||| ||||| || |||||||| |||||||||||||||||
Sbjct: 508 caggaggaagaagacctcatcattgagctccatgctgtccttgggaacaggtggtctcag 567
Query: 531 attgcagcgcagctgccagggaggactgataatgagatcaagaatctatggaactcgtgc 590
|||||||| |||||||| ||||||||||| || |||||||||||||| ||||| || |||
Sbjct: 568 attgcagctcagctgcctgggaggactgacaacgagatcaagaatctctggaattcttgc 627
Query: 591 atcaagaagaagctgaggcagaaaggcattgatcccaacacccacaagccacttactgag 650
|||||||||||||| |||||||||||||||||||||||||||||||||| || || |||
Sbjct: 628 atcaagaagaagctccggcagaaaggcattgatcccaacacccacaagcccctcaccgag 687
Query: 651 gctgatcacggcggtgcagctcccaccatcagcaccgagagaacctcagggtccagcgac 710
||||||| | | || ||||| ||||| ||||||||||||| ||||||||||||||||||
Sbjct: 688 gctgatcgcaggggagcagcacccacagtcagcaccgagaggacctcagggtccagcgac 747
Query: 711 atcaacccatcaagcactggtcctctggggaacttgagccccctcctcagcgagacggct 770
||||||| ||||| ||||| |||| ||||||||||||| ||||||||||||||| ||
Sbjct: 748 gtcaacccgtcaagtgctggtgctctagggaacttgagccacctcctcagcgagacagca 807
Query: 771 caatcatcaatgctgatgcccgtgtacgacaagaatcgtgctgaaacaccaaacttggca 830
||||||||||||||| |||| ||||| || ||||||| ||||||| ||| |||| ||
Sbjct: 808 caatcatcaatgctgctgccggtgtatgataagaatcaccctgaaactgcaagcttgcca 867
Query: 831 cgccctaagctgccaccaaaggagctgttcctggagcagcttactgctggacacgagagt 890
||||||||| |||||||||||||| |||| || || ||||||||||| || ||||||||
Sbjct: 868 cgccctaaggtgccaccaaaggagttgtttcttgaccagcttactgccggtcacgagagc 927
Query: 891 ccatcaacctgccactcatcaggccaaactctctatttccctttccaacagcccttaggc 950
||||||| |||| ||||||||| | ||| || ||||| |||||||| || || ||||||
Sbjct: 928 ccatcaagttgccgctcatcaggtccaaccctgtattttcctttccagcaaccattaggc 987
Query: 951 tacaacagtgagagtggcagcagcgatggggcgaatatgaattcactctggttcaaccag 1010
|||| | ||| |||||| | ||||| |||| |||||||||||||||||||||||||
Sbjct: 988 tacagtaatgaatgtggcactggggatggtgcgagtatgaattcactctggttcaaccag 1047
Query: 1011 agtgacttcaactgcagcacaatttctacagtgatgccgccagtttcaccatcggccctc 1070
| ||| |||||||||||||||||||| || |||||||| |||||||||||||| ||||||
Sbjct: 1048 aatgatttcaactgcagcacaatttccaccgtgatgccaccagtttcaccatcagccctc 1107
Query: 1071 tctacatcaatggggctgaatcttccacctgataatcctcgacatggaggaactggcatt 1130
|| ||||||||||||||||||||||| || || |||||||| || ||||| |||||||||
Sbjct: 1108 tcaacatcaatggggctgaatcttcccccagaaaatcctcgtcacggaggcactggcatt 1167
Query: 1131 gg 1132
||
Sbjct: 1168 gg 1169
Score = 204 bits (103), Expect = 1e-049
Identities = 211/245 (86%), Gaps = 4/245 (1%)
Strand = Plus / Plus
Query: 1348 cgaccacagtcatgcagaaccagagccaaacgctttatgatgatgtgatcaaggcagaga 1407
|||| |||| ||||||||||||||||||| | | || ||||||||||||||||||||||
Sbjct: 1388 cgacgacagccatgcagaaccagagccaatcattatacgatgatgtgatcaaggcagaga 1447
Query: 1408 gccaattcaacatagaagggatatgtgcttcttggttccagaatcagcagccacagcaac 1467
||||||||||||| |||||||||||||| |||||||||||||||||||| ||||| ||||
Sbjct: 1448 gccaattcaacatggaagggatatgtgcctcttggttccagaatcagcaaccacaacaac 1507
Query: 1468 agctgcaggtagcaccagacatgtatgacaaggacttgcaaagaatgcaactatcttttg 1527
||||||| | |||| ||||||||||||| || |||||||||||| ||| | |||||||
Sbjct: 1508 agctgcaagcagcatcagacatgtatgataaagacttgcaaagattgcccttgtcttttg 1567
Query: 1528 agaatatctaggcattatgttccacca--catggaacagagc--agatcagaagaagcag 1583
| ||||||||| ||| | | ||| ||||||||||||| ||||||||||||||||
Sbjct: 1568 aacatatctaggtgcaatgctacgccatgcatggaacagagcagagatcagaagaagcag 1627
Query: 1584 aaact 1588
|||||
Sbjct: 1628 aaact 1632
Score = 178 bits (90), Expect = 8e-042
Identities = 159/182 (87%)
Strand = Plus / Plus
Query: 1152 ttctactgggatggtactaatcctagcagcagtagcagtactgggagcagagggagcaac 1211
||||||||||||||| | |||||||||||||| |||||||||||||||| || ||||||
Sbjct: 1180 ttctactgggatggttccaatcctagcagcagcggcagtactgggagcagcggaagcaac 1239
Query: 1212 agtatgggatttgaaccacagagcacgagcacaattctggagaacagtgtcttcccatgg 1271
||||||||||| || ||||||||||| | | ||||| ||||||||||||| |||||||||
Sbjct: 1240 agtatgggattcgagccacagagcacaacctcaattttggagaacagtgtattcccatgg 1299
Query: 1272 acagacattggacaagaaaaagatacaagggctcacctagtagcggaacttaagtggcct 1331
||||| || |||||||| |||||||| || | |||| |||| | |||||| |||||||||
Sbjct: 1300 acagatatcggacaagagaaagataccagagttcacttagtggaggaactcaagtggcct 1359
Query: 1332 ga 1333
||
Sbjct: 1360 ga 1361
Score = 81.8 bits (41), Expect = 1e-012
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 5 cctttccttgctttccactgaaatctcctatctgcagccatgcagttgctcaatcctggc 64
||||||| |||||||||||||||||||||||| ||| |||| |||||||||||| ||||
Sbjct: 28 cctttccctgctttccactgaaatctcctatccgcaaccatacagttgctcaattctggt 87
Query: 65 ctcag 69
|||||
Sbjct: 88 ctcag 92
Score = 44.1 bits (22), Expect = 0.29
Identities = 47/54 (87%), Gaps = 1/54 (1%)
Strand = Plus / Plus
Query: 1745 ataggaaagtatgttctagagtctcctttcctttctcttgaaaattgatgtttt 1798
|||| |||||| |||||||||||||| || |||||||||||| ||| ||||||
Sbjct: 1780 atagaaaagtacgttctagagtctcc-ctcttttctcttgaaatttgctgtttt 1832
>dbj|AK111821.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023018J24, full
insert sequence
Length = 3716
Score = 884 bits (446), Expect = 0.0
Identities = 788/902 (87%)
Strand = Plus / Plus
Query: 231 agctcccaggttctgcattgcgttgagatggggaggcattcttgctgctacaagcagaag 290
|||||| |||| ||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 1899 agctccgaggtcctgcattgcactgaaatggggaggcattcttgctgctacaagcagaaa 1958
Query: 291 ctgagaaaggggctctggtcccctgaggaggatgagaaactcatgaatcacataacaaag 350
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 1959 ttgaggaaggggctctggtcccctgaggaggatgagaagctcatgaatcacataaccaag 2018
Query: 351 catggccatggctgctggagctctgttcccaaactcgctgggcttcaaaggtgcggaaag 410
|||||||||||||||||||| |||||||| ||||| || ||||| ||||| ||||| |||
Sbjct: 2019 catggccatggctgctggagttctgttcctaaacttgcagggctccaaagatgcggcaag 2078
Query: 411 agttgtaggctgaggtggataaactatctgaggccagacctcaagagaggggcattcgcc 470
|| || ||||||||||||||||||||||||||||| |||||||||||||| |||||| |
Sbjct: 2079 agctgcaggctgaggtggataaactatctgaggcctgacctcaagagaggtgcattctct 2138
Query: 471 caagacgaagaagacctcatcatcgagctgcacgctgtcctcgggaacaggtggtctcaa 530
|| || ||||||||||||||||| ||||| || |||||||| |||||||||||||||||
Sbjct: 2139 caggaggaagaagacctcatcattgagctccatgctgtccttgggaacaggtggtctcag 2198
Query: 531 attgcagcgcagctgccagggaggactgataatgagatcaagaatctatggaactcgtgc 590
|||||||| |||||||| ||||||||||| || |||||||||||||| ||||| || |||
Sbjct: 2199 attgcagctcagctgcctgggaggactgacaacgagatcaagaatctctggaattcttgc 2258
Query: 591 atcaagaagaagctgaggcagaaaggcattgatcccaacacccacaagccacttactgag 650
|||||||||||||| |||||||||||||||||||||||||||||||||| || || |||
Sbjct: 2259 atcaagaagaagctccggcagaaaggcattgatcccaacacccacaagcccctcaccgag 2318
Query: 651 gctgatcacggcggtgcagctcccaccatcagcaccgagagaacctcagggtccagcgac 710
||||||| | | || ||||| ||||| ||||||||||||| ||||||||||||||||||
Sbjct: 2319 gctgatcgcaggggagcagcacccacagtcagcaccgagaggacctcagggtccagcgac 2378
Query: 711 atcaacccatcaagcactggtcctctggggaacttgagccccctcctcagcgagacggct 770
||||||| ||||| ||||| |||| ||||||||||||| ||||||||||||||| ||
Sbjct: 2379 gtcaacccgtcaagtgctggtgctctagggaacttgagccacctcctcagcgagacagca 2438
Query: 771 caatcatcaatgctgatgcccgtgtacgacaagaatcgtgctgaaacaccaaacttggca 830
||||||||||||||| |||| ||||| || ||||||| ||||||| ||| |||| ||
Sbjct: 2439 caatcatcaatgctgctgccggtgtatgataagaatcaccctgaaactgcaagcttgcca 2498
Query: 831 cgccctaagctgccaccaaaggagctgttcctggagcagcttactgctggacacgagagt 890
||||||||| |||||||||||||| |||| || || ||||||||||| || ||||||||
Sbjct: 2499 cgccctaaggtgccaccaaaggagttgtttcttgaccagcttactgccggtcacgagagc 2558
Query: 891 ccatcaacctgccactcatcaggccaaactctctatttccctttccaacagcccttaggc 950
||||||| |||| ||||||||| | ||| || ||||| |||||||| || || ||||||
Sbjct: 2559 ccatcaagttgccgctcatcaggtccaaccctgtattttcctttccagcaaccattaggc 2618
Query: 951 tacaacagtgagagtggcagcagcgatggggcgaatatgaattcactctggttcaaccag 1010
|||| | ||| |||||| | ||||| |||| |||||||||||||||||||||||||
Sbjct: 2619 tacagtaatgaatgtggcactggggatggtgcgagtatgaattcactctggttcaaccag 2678
Query: 1011 agtgacttcaactgcagcacaatttctacagtgatgccgccagtttcaccatcggccctc 1070
| ||| ||||||||||||||||| || || |||||||| |||||||||||||| ||||||
Sbjct: 2679 aatgatttcaactgcagcacaatctccaccgtgatgccaccagtttcaccatcagccctc 2738
Query: 1071 tctacatcaatggggctgaatcttccacctgataatcctcgacatggaggaactggcatt 1130
|| ||||||||||||||||||||||| || || |||||||| || ||||| |||||||||
Sbjct: 2739 tcaacatcaatggggctgaatcttcccccagaaaatcctcgtcacggaggcactggcatt 2798
Query: 1131 gg 1132
||
Sbjct: 2799 gg 2800
Score = 204 bits (103), Expect = 1e-049
Identities = 211/245 (86%), Gaps = 4/245 (1%)
Strand = Plus / Plus
Query: 1348 cgaccacagtcatgcagaaccagagccaaacgctttatgatgatgtgatcaaggcagaga 1407
|||| |||| ||||||||||||||||||| | | || ||||||||||||||||||||||
Sbjct: 3019 cgacgacagccatgcagaaccagagccaatcattatacgatgatgtgatcaaggcagaga 3078
Query: 1408 gccaattcaacatagaagggatatgtgcttcttggttccagaatcagcagccacagcaac 1467
||||||||||||| |||||||||||||| |||||||||||||||||||| ||||| ||||
Sbjct: 3079 gccaattcaacatggaagggatatgtgcctcttggttccagaatcagcaaccacaacaac 3138
Query: 1468 agctgcaggtagcaccagacatgtatgacaaggacttgcaaagaatgcaactatcttttg 1527
||||||| | |||| ||||||||||||| || |||||||||||| ||| | |||||||
Sbjct: 3139 agctgcaagcagcatcagacatgtatgataaagacttgcaaagattgcccttgtcttttg 3198
Query: 1528 agaatatctaggcattatgttccacca--catggaacagagc--agatcagaagaagcag 1583
| ||||||||| ||| | | ||| ||||||||||||| ||||||||||||||||
Sbjct: 3199 aacatatctaggtgcaatgctacgccatgcatggaacagagcagagatcagaagaagcag 3258
Query: 1584 aaact 1588
|||||
Sbjct: 3259 aaact 3263
Score = 178 bits (90), Expect = 8e-042
Identities = 159/182 (87%)
Strand = Plus / Plus
Query: 1152 ttctactgggatggtactaatcctagcagcagtagcagtactgggagcagagggagcaac 1211
||||||||||||||| | |||||||||||||| |||||||||||||||| || ||||||
Sbjct: 2811 ttctactgggatggttccaatcctagcagcagcggcagtactgggagcagcggaagcaac 2870
Query: 1212 agtatgggatttgaaccacagagcacgagcacaattctggagaacagtgtcttcccatgg 1271
||||||||||| || ||||||||||| | | ||||| ||||||||||||| |||||||||
Sbjct: 2871 agtatgggattcgagccacagagcacaacctcaattttggagaacagtgtattcccatgg 2930
Query: 1272 acagacattggacaagaaaaagatacaagggctcacctagtagcggaacttaagtggcct 1331
||||| || |||||||| |||||||| || | |||| |||| | |||||| |||||||||
Sbjct: 2931 acagatatcggacaagagaaagataccagagttcacttagtggaggaactcaagtggcct 2990
Query: 1332 ga 1333
||
Sbjct: 2991 ga 2992
Score = 93.7 bits (47), Expect = 4e-016
Identities = 208/255 (81%), Gaps = 20/255 (7%)
Strand = Plus / Plus
Query: 1745 ataggaaagtatgttctagagtctcctttcctttctcttgaaaattgatgttttccttct 1804
|||| |||||| |||||||||||||| | | |||||||||||| ||| |||||| |
Sbjct: 3411 atagaaaagtacgttctagagtctccct-cttttctcttgaaatttgctgttttt----t 3465
Query: 1805 gtacacgac---tgaacttttgcatatttgagtttttgttctctctggtggaaattaaat 1861
||||||||| | |||||||| ||| ||||||||| |||| ||||| | || ||||
Sbjct: 3466 gtacacgacaactcaacttttggatacttgagttttggttcactctgttt---atcaaat 3522
Query: 1862 aaatatagatagccataggcaaaaatgcatgtgtcggtagctctcaa----cgtgcaagt 1917
||||||||| | ||| ||||||| ||||||||||||||||||| | | |||||
Sbjct: 3523 aaatatagacacgcatgggcaaaa---catgtgtcggtagctctcacaaaccatacaagt 3579
Query: 1918 agccccaaacttt-caactgctgccatgcatgtccatgcaaattaattattgcatgttgt 1976
|| ||||| |||| |||||||| ||||||| || ||||||||||||||||||||||||||
Sbjct: 3580 agtcccaagcttttcaactgctaccatgcacgtacatgcaaattaattattgcatgttgt 3639
Query: 1977 atttttcatttcttt 1991
|||||| ||||||||
Sbjct: 3640 attttt-atttcttt 3653
Score = 81.8 bits (41), Expect = 1e-012
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 5 cctttccttgctttccactgaaatctcctatctgcagccatgcagttgctcaatcctggc 64
||||||| |||||||||||||||||||||||| ||| |||| |||||||||||| ||||
Sbjct: 1659 cctttccctgctttccactgaaatctcctatccgcaaccatacagttgctcaattctggt 1718
Query: 65 ctcag 69
|||||
Sbjct: 1719 ctcag 1723
>dbj|AK104345.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D09, full
insert sequence
Length = 1894
Score = 876 bits (442), Expect = 0.0
Identities = 787/902 (87%)
Strand = Plus / Plus
Query: 231 agctcccaggttctgcattgcgttgagatggggaggcattcttgctgctacaagcagaag 290
|||||| |||| ||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 64 agctccgaggtcctgcattgcactgaaatggggaggcattcttgctgctacaagcagaaa 123
Query: 291 ctgagaaaggggctctggtcccctgaggaggatgagaaactcatgaatcacataacaaag 350
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 124 ttgaggaaggggctctggtcccctgaggaggatgagaagctcatgaatcacataaccaag 183
Query: 351 catggccatggctgctggagctctgttcccaaactcgctgggcttcaaaggtgcggaaag 410
|||||||||||||||||||| |||||||| ||||| || ||||| ||||| ||||| |||
Sbjct: 184 catggccatggctgctggagttctgttcctaaacttgcagggctccaaagatgcggcaag 243
Query: 411 agttgtaggctgaggtggataaactatctgaggccagacctcaagagaggggcattcgcc 470
|| || ||||||||||||||||||||||||||||| |||||||||||||| |||||| |
Sbjct: 244 agctgcaggctgaggtggataaactatctgaggcctgacctcaagagaggtgcattctct 303
Query: 471 caagacgaagaagacctcatcatcgagctgcacgctgtcctcgggaacaggtggtctcaa 530
|| || ||||||||||||||||| ||||| || |||||||| |||||||||||||||||
Sbjct: 304 caggaggaagaagacctcatcattgagctccatgctgtccttgggaacaggtggtctcag 363
Query: 531 attgcagcgcagctgccagggaggactgataatgagatcaagaatctatggaactcgtgc 590
|||||||| |||||||| ||||||||||| || |||||||||||||| ||||| || |||
Sbjct: 364 attgcagctcagctgcctgggaggactgacaacgagatcaagaatctctggaattcttgc 423
Query: 591 atcaagaagaagctgaggcagaaaggcattgatcccaacacccacaagccacttactgag 650
|||||||||||||| |||||||||||||||||||||||||||||||||| || || |||
Sbjct: 424 atcaagaagaagctccggcagaaaggcattgatcccaacacccacaagcccctcaccgag 483
Query: 651 gctgatcacggcggtgcagctcccaccatcagcaccgagagaacctcagggtccagcgac 710
||||||| | | || ||||| ||||| ||||||||||||| ||||||||||||||||||
Sbjct: 484 gctgatcgcaggggagcagcacccacagtcagcaccgagaggacctcagggtccagcgac 543
Query: 711 atcaacccatcaagcactggtcctctggggaacttgagccccctcctcagcgagacggct 770
||||||| ||||| ||||| |||| ||||||||||||| ||||||||||||||| ||
Sbjct: 544 gtcaacccgtcaagtgctggtgctctagggaacttgagccacctcctcagcgagacagca 603
Query: 771 caatcatcaatgctgatgcccgtgtacgacaagaatcgtgctgaaacaccaaacttggca 830
||||||||||||||| |||| ||||| || ||||||| ||||||| ||| |||| ||
Sbjct: 604 caatcatcaatgctgctgccggtgtatgataagaatcaccctgaaactgcaagcttgcca 663
Query: 831 cgccctaagctgccaccaaaggagctgttcctggagcagcttactgctggacacgagagt 890
||||||||| |||||||||||||| |||| || || ||||||||||| || ||||||||
Sbjct: 664 cgccctaaggtgccaccaaaggagttgtttcttgaccagcttactgccggtcacgagagc 723
Query: 891 ccatcaacctgccactcatcaggccaaactctctatttccctttccaacagcccttaggc 950
||||||| |||| ||||||||| | ||| || ||||| |||||||| || || ||||||
Sbjct: 724 ccatcaagttgccgctcatcaggtccaaccctgtattttcctttccagcaaccattaggc 783
Query: 951 tacaacagtgagagtggcagcagcgatggggcgaatatgaattcactctggttcaaccag 1010
|||| | ||| |||||| | ||||| |||| |||||||||||||||||||||||||
Sbjct: 784 tacagtaatgaatgtggcactggggatggtgcgagtatgaattcactctggttcaaccag 843
Query: 1011 agtgacttcaactgcagcacaatttctacagtgatgccgccagtttcaccatcggccctc 1070
| ||| ||||||||||||||||| || || |||||||| |||||||||||||| ||||||
Sbjct: 844 aatgatttcaactgcagcacaatctccaccgtgatgccaccagtttcaccatcagccctc 903
Query: 1071 tctacatcaatggggctgaatcttccacctgataatcctcgacatggaggaactggcatt 1130
|| ||||||||||||||||||||||| || || ||||||| || ||||| |||||||||
Sbjct: 904 tcaacatcaatggggctgaatcttcccccagaagatcctcgtcacggaggcactggcatt 963
Query: 1131 gg 1132
||
Sbjct: 964 gg 965
Score = 204 bits (103), Expect = 1e-049
Identities = 211/245 (86%), Gaps = 4/245 (1%)
Strand = Plus / Plus
Query: 1348 cgaccacagtcatgcagaaccagagccaaacgctttatgatgatgtgatcaaggcagaga 1407
|||| |||| ||||||||||||||||||| | | || ||||||||||||||||||||||
Sbjct: 1184 cgacgacagccatgcagaaccagagccaatcattatacgatgatgtgatcaaggcagaga 1243
Query: 1408 gccaattcaacatagaagggatatgtgcttcttggttccagaatcagcagccacagcaac 1467
||||||||||||| |||||||||||||| |||||||||||||||||||| ||||| ||||
Sbjct: 1244 gccaattcaacatggaagggatatgtgcctcttggttccagaatcagcaaccacaacaac 1303
Query: 1468 agctgcaggtagcaccagacatgtatgacaaggacttgcaaagaatgcaactatcttttg 1527
||||||| | |||| ||||||||||||| || |||||||||||| ||| | |||||||
Sbjct: 1304 agctgcaagcagcatcagacatgtatgataaagacttgcaaagattgcccttgtcttttg 1363
Query: 1528 agaatatctaggcattatgttccacca--catggaacagagc--agatcagaagaagcag 1583
| ||||||||| ||| | | ||| ||||||||||||| ||||||||||||||||
Sbjct: 1364 aacatatctaggtgcaatgctacgccatgcatggaacagagcagagatcagaagaagcag 1423
Query: 1584 aaact 1588
|||||
Sbjct: 1424 aaact 1428
Score = 178 bits (90), Expect = 8e-042
Identities = 159/182 (87%)
Strand = Plus / Plus
Query: 1152 ttctactgggatggtactaatcctagcagcagtagcagtactgggagcagagggagcaac 1211
||||||||||||||| | |||||||||||||| |||||||||||||||| || ||||||
Sbjct: 976 ttctactgggatggttccaatcctagcagcagcggcagtactgggagcagcggaagcaac 1035
Query: 1212 agtatgggatttgaaccacagagcacgagcacaattctggagaacagtgtcttcccatgg 1271
||||||||||| || ||||||||||| | | ||||| ||||||||||||| |||||||||
Sbjct: 1036 agtatgggattcgagccacagagcacaacctcaattttggagaacagtgtattcccatgg 1095
Query: 1272 acagacattggacaagaaaaagatacaagggctcacctagtagcggaacttaagtggcct 1331
||||| || |||||||| |||||||| || | |||| |||| | |||||| |||||||||
Sbjct: 1096 acagatatcggacaagagaaagataccagagttcacttagtggaggaactcaagtggcct 1155
Query: 1332 ga 1333
||
Sbjct: 1156 ga 1157
Score = 93.7 bits (47), Expect = 4e-016
Identities = 208/255 (81%), Gaps = 20/255 (7%)
Strand = Plus / Plus
Query: 1745 ataggaaagtatgttctagagtctcctttcctttctcttgaaaattgatgttttccttct 1804
|||| |||||| |||||||||||||| | | |||||||||||| ||| |||||| |
Sbjct: 1576 atagaaaagtacgttctagagtctccct-cttttctcttgaaatttgctgttttt----t 1630
Query: 1805 gtacacgac---tgaacttttgcatatttgagtttttgttctctctggtggaaattaaat 1861
||||||||| | |||||||| ||| ||||||||| |||| ||||| | || ||||
Sbjct: 1631 gtacacgacaactcaacttttggatacttgagttttggttcactctgttt---atcaaat 1687
Query: 1862 aaatatagatagccataggcaaaaatgcatgtgtcggtagctctcaa----cgtgcaagt 1917
||||||||| | ||| ||||||| ||||||||||||||||||| | | |||||
Sbjct: 1688 aaatatagacacgcatgggcaaaa---catgtgtcggtagctctcacaaaccatacaagt 1744
Query: 1918 agccccaaacttt-caactgctgccatgcatgtccatgcaaattaattattgcatgttgt 1976
|| ||||| |||| |||||||| ||||||| || ||||||||||||||||||||||||||
Sbjct: 1745 agtcccaagcttttcaactgctaccatgcacgtacatgcaaattaattattgcatgttgt 1804
Query: 1977 atttttcatttcttt 1991
|||||| ||||||||
Sbjct: 1805 attttt-atttcttt 1818
>dbj|AK099636.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013059L07, full
insert sequence
Length = 2207
Score = 862 bits (435), Expect = 0.0
Identities = 787/903 (87%), Gaps = 1/903 (0%)
Strand = Plus / Plus
Query: 231 agctcccaggttctgcattgcgttgagatggggaggcattcttgctgctacaagcagaag 290
|||||| |||| ||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 376 agctccgaggtcctgcattgcactgaaatggggaggcattcttgctgctacaagcagaaa 435
Query: 291 ctgagaaaggggctctggtcccctgaggaggatgagaaactcatgaatcacataacaaag 350
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 436 ttgaggaaggggctctggtcccctgaggaggatgagaagctcatgaatcacataaccaag 495
Query: 351 catggccatggctgctggagctctgttcccaaactcgctgggcttcaaaggtgcggaaag 410
|||||||||||||||||||| |||||||| ||||| || ||||| ||||| ||||| |||
Sbjct: 496 catggccatggctgctggagttctgttcctaaacttgcagggctccaaagatgcggcaag 555
Query: 411 agttgtaggctgaggtggataaactatctgaggccagacctcaagagaggggcattcgcc 470
|| || ||||||||||||||||||||||||||||| |||||||||||||| |||||| |
Sbjct: 556 agctgcaggctgaggtggataaactatctgaggcctgacctcaagagaggtgcattctct 615
Query: 471 caagacgaagaagacctcatcatcgagctgcacgctgtcctcgggaacaggtggtctcaa 530
|| || ||||||||||||||||| ||||| || |||||||| |||||||||||||||||
Sbjct: 616 caggaggaagaagacctcatcattgagctccatgctgtccttgggaacaggtggtctcag 675
Query: 531 attgcagcgcagctgccagggaggactgataatgagatcaagaatctatggaactcgtgc 590
|||||||| |||||||| ||||||||||| || |||||||||||||| ||||| || |||
Sbjct: 676 attgcagctcagctgcctgggaggactgacaacgagatcaagaatctctggaattcttgc 735
Query: 591 atcaagaagaagctgaggcagaaaggcattgatcccaacacccacaagccacttactgag 650
|||||||||||||| |||||||||||||||||||||||||||||||||| || || |||
Sbjct: 736 atcaagaagaagctccggcagaaaggcattgatcccaacacccacaagcccctcaccgag 795
Query: 651 gctgatcacggcggtgcagctcccaccatcagcaccgagagaacctcagggtccagcgac 710
||||||| | | || ||||| ||||| ||||||||||||| ||||||||||||||||||
Sbjct: 796 gctgatcgcaggggagcagcacccacagtcagcaccgagaggacctcagggtccagcgac 855
Query: 711 atcaacccatcaagcactggtcctctggggaacttgagccccctcctcagcgagacggct 770
||||||| ||||| ||||| |||| ||||||||||||| ||||||||||||||| ||
Sbjct: 856 gtcaacccgtcaagtgctggtgctctagggaacttgagccacctcctcagcgagacagca 915
Query: 771 caatcatcaatgctgatgcccgtgtacgacaagaatcgtgctgaaacaccaaacttggca 830
||||||||||||||| |||| ||||| || ||||||| ||||||| ||| |||| ||
Sbjct: 916 caatcatcaatgctgctgccggtgtatgataagaatcaccctgaaactgcaagcttgcca 975
Query: 831 cgccctaagctgccaccaaaggag-ctgttcctggagcagcttactgctggacacgagag 889
||||||||| |||||||||||| | |||| || || ||||||||||| || ||||||||
Sbjct: 976 cgccctaaggtgccaccaaaggggtttgtttcttgaccagcttactgccggtcacgagag 1035
Query: 890 tccatcaacctgccactcatcaggccaaactctctatttccctttccaacagcccttagg 949
||||||| |||| ||||||||| | ||| || ||||| |||||||| || || |||||
Sbjct: 1036 cccatcaagttgccgctcatcaggtccaaccctgtattttcctttccagcaaccattagg 1095
Query: 950 ctacaacagtgagagtggcagcagcgatggggcgaatatgaattcactctggttcaacca 1009
||||| | ||| |||||| | ||||| |||| ||||||||||||||||||||||||
Sbjct: 1096 ctacagtaatgaatgtggcactggggatggtgcgagtatgaattcactctggttcaacca 1155
Query: 1010 gagtgacttcaactgcagcacaatttctacagtgatgccgccagtttcaccatcggccct 1069
|| ||| ||||||||||||||||| || || |||||||| |||||||||||||| |||||
Sbjct: 1156 gaatgatttcaactgcagcacaatctccaccgtgatgccaccagtttcaccatcagccct 1215
Query: 1070 ctctacatcaatggggctgaatcttccacctgataatcctcgacatggaggaactggcat 1129
||| ||||||||||||||||||||||| || || |||||||| || ||||| ||||||||
Sbjct: 1216 ctcaacatcaatggggctgaatcttcccccagaaaatcctcgtcacggaggcactggcat 1275
Query: 1130 tgg 1132
|||
Sbjct: 1276 tgg 1278
Score = 204 bits (103), Expect = 1e-049
Identities = 211/245 (86%), Gaps = 4/245 (1%)
Strand = Plus / Plus
Query: 1348 cgaccacagtcatgcagaaccagagccaaacgctttatgatgatgtgatcaaggcagaga 1407
|||| |||| ||||||||||||||||||| | | || ||||||||||||||||||||||
Sbjct: 1497 cgacgacagccatgcagaaccagagccaatcattatacgatgatgtgatcaaggcagaga 1556
Query: 1408 gccaattcaacatagaagggatatgtgcttcttggttccagaatcagcagccacagcaac 1467
||||||||||||| |||||||||||||| |||||||||||||||||||| ||||| ||||
Sbjct: 1557 gccaattcaacatggaagggatatgtgcctcttggttccagaatcagcaaccacaacaac 1616
Query: 1468 agctgcaggtagcaccagacatgtatgacaaggacttgcaaagaatgcaactatcttttg 1527
||||||| | |||| ||||||||||||| || |||||||||||| ||| | |||||||
Sbjct: 1617 agctgcaagcagcatcagacatgtatgataaagacttgcaaagattgcccttgtcttttg 1676
Query: 1528 agaatatctaggcattatgttccacca--catggaacagagc--agatcagaagaagcag 1583
| ||||||||| ||| | | ||| ||||||||||||| ||||||||||||||||
Sbjct: 1677 aacatatctaggtgcaatgctacgccatgcatggaacagagcagagatcagaagaagcag 1736
Query: 1584 aaact 1588
|||||
Sbjct: 1737 aaact 1741
Score = 178 bits (90), Expect = 8e-042
Identities = 159/182 (87%)
Strand = Plus / Plus
Query: 1152 ttctactgggatggtactaatcctagcagcagtagcagtactgggagcagagggagcaac 1211
||||||||||||||| | |||||||||||||| |||||||||||||||| || ||||||
Sbjct: 1289 ttctactgggatggttccaatcctagcagcagcggcagtactgggagcagcggaagcaac 1348
Query: 1212 agtatgggatttgaaccacagagcacgagcacaattctggagaacagtgtcttcccatgg 1271
||||||||||| || ||||||||||| | | ||||| ||||||||||||| |||||||||
Sbjct: 1349 agtatgggattcgagccacagagcacaacctcaattttggagaacagtgtattcccatgg 1408
Query: 1272 acagacattggacaagaaaaagatacaagggctcacctagtagcggaacttaagtggcct 1331
||||| || |||||||| |||||||| || | |||| |||| | |||||| |||||||||
Sbjct: 1409 acagatatcggacaagagaaagataccagagttcacttagtggaggaactcaagtggcct 1468
Query: 1332 ga 1333
||
Sbjct: 1469 ga 1470
Score = 93.7 bits (47), Expect = 4e-016
Identities = 208/255 (81%), Gaps = 20/255 (7%)
Strand = Plus / Plus
Query: 1745 ataggaaagtatgttctagagtctcctttcctttctcttgaaaattgatgttttccttct 1804
|||| |||||| |||||||||||||| | | |||||||||||| ||| |||||| |
Sbjct: 1889 atagaaaagtacgttctagagtctccct-cttttctcttgaaatttgctgttttt----t 1943
Query: 1805 gtacacgac---tgaacttttgcatatttgagtttttgttctctctggtggaaattaaat 1861
||||||||| | |||||||| ||| ||||||||| |||| ||||| | || ||||
Sbjct: 1944 gtacacgacaactcaacttttggatacttgagttttggttcactctgttt---atcaaat 2000
Query: 1862 aaatatagatagccataggcaaaaatgcatgtgtcggtagctctcaa----cgtgcaagt 1917
||||||||| | ||| ||||||| ||||||||||||||||||| | | |||||
Sbjct: 2001 aaatatagacacgcatgggcaaaa---catgtgtcggtagctctcacaaaccatacaagt 2057
Query: 1918 agccccaaacttt-caactgctgccatgcatgtccatgcaaattaattattgcatgttgt 1976
|| ||||| |||| |||||||| ||||||| || ||||||||||||||||||||||||||
Sbjct: 2058 agtcccaagcttttcaactgctaccatgcacgtacatgcaaattaattattgcatgttgt 2117
Query: 1977 atttttcatttcttt 1991
|||||| ||||||||
Sbjct: 2118 attttt-atttcttt 2131
Score = 81.8 bits (41), Expect = 1e-012
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 5 cctttccttgctttccactgaaatctcctatctgcagccatgcagttgctcaatcctggc 64
||||||| |||||||||||||||||||||||| ||| |||| |||||||||||| ||||
Sbjct: 136 cctttccctgctttccactgaaatctcctatccgcaaccatacagttgctcaattctggt 195
Query: 65 ctcag 69
|||||
Sbjct: 196 ctcag 200
>gb|CB656567.1|CB656567 OSJNEc11B07.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc11B07 5', mRNA sequence
Length = 806
Score = 644 bits (325), Expect = 0.0
Identities = 514/577 (89%)
Strand = Plus / Plus
Query: 231 agctcccaggttctgcattgcgttgagatggggaggcattcttgctgctacaagcagaag 290
|||||| |||| ||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 216 agctccgaggtcctgcattgcactgaaatggggaggcattcttgctgctacaagcagaaa 275
Query: 291 ctgagaaaggggctctggtcccctgaggaggatgagaaactcatgaatcacataacaaag 350
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 276 ttgaggaaggggctctggtcccctgaggaggatgagaagctcatgaatcacataaccaag 335
Query: 351 catggccatggctgctggagctctgttcccaaactcgctgggcttcaaaggtgcggaaag 410
|||||||||||||||||||| |||||||| ||||| || ||||| ||||| ||||| |||
Sbjct: 336 catggccatggctgctggagttctgttcctaaacttgcagggctccaaagatgcggcaag 395
Query: 411 agttgtaggctgaggtggataaactatctgaggccagacctcaagagaggggcattcgcc 470
|| || ||||||||||||||||||||||||||||| |||||||||||||| |||||| |
Sbjct: 396 agctgcaggctgaggtggataaactatctgaggcctgacctcaagagaggtgcattctct 455
Query: 471 caagacgaagaagacctcatcatcgagctgcacgctgtcctcgggaacaggtggtctcaa 530
|| || ||||||||||||||||| ||||| || |||||||| |||||||||||||||||
Sbjct: 456 caggaggaagaagacctcatcattgagctccatgctgtccttgggaacaggtggtctcag 515
Query: 531 attgcagcgcagctgccagggaggactgataatgagatcaagaatctatggaactcgtgc 590
|||||||| |||||||| ||||||||||| || |||||||||||||| ||||| || |||
Sbjct: 516 attgcagctcagctgcctgggaggactgacaacgagatcaagaatctctggaattcttgc 575
Query: 591 atcaagaagaagctgaggcagaaaggcattgatcccaacacccacaagccacttactgag 650
|||||||||||||| |||||||||||||||||||||||||||||||||| || || |||
Sbjct: 576 atcaagaagaagctccggcagaaaggcattgatcccaacacccacaagcccctcaccgag 635
Query: 651 gctgatcacggcggtgcagctcccaccatcagcaccgagagaacctcagggtccagcgac 710
||||||| | | || ||||| ||||| ||||||||||||| ||||||||||||||||||
Sbjct: 636 gctgatcgcaggggagcagcacccacagtcagcaccgagaggacctcagggtccagcgac 695
Query: 711 atcaacccatcaagcactggtcctctggggaacttgagccccctcctcagcgagacggct 770
||||||| ||||| ||||| |||| ||||||||||||| ||||||||||||||| ||
Sbjct: 696 gtcaacccgtcaagtgctggtgctctagggaacttgagccacctcctcagcgagacagca 755
Query: 771 caatcatcaatgctgatgcccgtgtacgacaagaatc 807
||||||||||||||| |||| ||||| || |||||||
Sbjct: 756 caatcatcaatgctgctgccggtgtatgataagaatc 792
>gb|AC137621.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
OSJNBb0111O13, complete sequence
Length = 126332
Score = 543 bits (274), Expect = e-151
Identities = 529/614 (86%)
Strand = Plus / Plus
Query: 519 aggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatcta 578
||||||||||| |||||||| |||||||| ||||||||||| || ||||||||||||||
Sbjct: 85933 aggtggtctcagattgcagctcagctgcctgggaggactgacaacgagatcaagaatctc 85992
Query: 579 tggaactcgtgcatcaagaagaagctgaggcagaaaggcattgatcccaacacccacaag 638
||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 85993 tggaattcttgcatcaagaagaagctccggcagaaaggcattgatcccaacacccacaag 86052
Query: 639 ccacttactgaggctgatcacggcggtgcagctcccaccatcagcaccgagagaacctca 698
|| || || |||||||||| | | || ||||| ||||| ||||||||||||| ||||||
Sbjct: 86053 cccctcaccgaggctgatcgcaggggagcagcacccacagtcagcaccgagaggacctca 86112
Query: 699 gggtccagcgacatcaacccatcaagcactggtcctctggggaacttgagccccctcctc 758
|||||||||||| ||||||| ||||| ||||| |||| ||||||||||||| |||||||
Sbjct: 86113 gggtccagcgacgtcaacccgtcaagtgctggtgctctagggaacttgagccacctcctc 86172
Query: 759 agcgagacggctcaatcatcaatgctgatgcccgtgtacgacaagaatcgtgctgaaaca 818
|||||||| || ||||||||||||||| |||| ||||| || ||||||| |||||||
Sbjct: 86173 agcgagacagcacaatcatcaatgctgctgccggtgtatgataagaatcaccctgaaact 86232
Query: 819 ccaaacttggcacgccctaagctgccaccaaaggagctgttcctggagcagcttactgct 878
||| |||| ||||||||||| |||||||||||||| |||| || || |||||||||||
Sbjct: 86233 gcaagcttgccacgccctaaggtgccaccaaaggagttgtttcttgaccagcttactgcc 86292
Query: 879 ggacacgagagtccatcaacctgccactcatcaggccaaactctctatttccctttccaa 938
|| |||||||| ||||||| |||| ||||||||| | ||| || ||||| ||||||||
Sbjct: 86293 ggtcacgagagcccatcaagttgccgctcatcaggtccaaccctgtattttcctttccag 86352
Query: 939 cagcccttaggctacaacagtgagagtggcagcagcgatggggcgaatatgaattcactc 998
|| || |||||||||| | ||| |||||| | ||||| |||| |||||||||||||
Sbjct: 86353 caaccattaggctacagtaatgaatgtggcactggggatggtgcgagtatgaattcactc 86412
Query: 999 tggttcaaccagagtgacttcaactgcagcacaatttctacagtgatgccgccagtttca 1058
||||||||||||| ||| ||||||||||||||||| || || |||||||| |||||||||
Sbjct: 86413 tggttcaaccagaatgatttcaactgcagcacaatctccaccgtgatgccaccagtttca 86472
Query: 1059 ccatcggccctctctacatcaatggggctgaatcttccacctgataatcctcgacatgga 1118
||||| |||||||| ||||||||||||||||||||||| || || |||||||| || |||
Sbjct: 86473 ccatcagccctctcaacatcaatggggctgaatcttcccccagaaaatcctcgtcacgga 86532
Query: 1119 ggaactggcattgg 1132
|| |||||||||||
Sbjct: 86533 ggcactggcattgg 86546
Score = 212 bits (107), Expect = 5e-052
Identities = 143/155 (92%)
Strand = Plus / Plus
Query: 231 agctcccaggttctgcattgcgttgagatggggaggcattcttgctgctacaagcagaag 290
|||||| |||| ||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 85409 agctccgaggtcctgcattgcactgaaatggggaggcattcttgctgctacaagcagaaa 85468
Query: 291 ctgagaaaggggctctggtcccctgaggaggatgagaaactcatgaatcacataacaaag 350
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 85469 ttgaggaaggggctctggtcccctgaggaggatgagaagctcatgaatcacataaccaag 85528
Query: 351 catggccatggctgctggagctctgttcccaaact 385
|||||||||||||||||||| |||||||| |||||
Sbjct: 85529 catggccatggctgctggagttctgttcctaaact 85563
Score = 204 bits (103), Expect = 1e-049
Identities = 211/245 (86%), Gaps = 4/245 (1%)
Strand = Plus / Plus
Query: 1348 cgaccacagtcatgcagaaccagagccaaacgctttatgatgatgtgatcaaggcagaga 1407
|||| |||| ||||||||||||||||||| | | || ||||||||||||||||||||||
Sbjct: 86765 cgacgacagccatgcagaaccagagccaatcattatacgatgatgtgatcaaggcagaga 86824
Query: 1408 gccaattcaacatagaagggatatgtgcttcttggttccagaatcagcagccacagcaac 1467
||||||||||||| |||||||||||||| |||||||||||||||||||| ||||| ||||
Sbjct: 86825 gccaattcaacatggaagggatatgtgcctcttggttccagaatcagcaaccacaacaac 86884
Query: 1468 agctgcaggtagcaccagacatgtatgacaaggacttgcaaagaatgcaactatcttttg 1527
||||||| | |||| ||||||||||||| || |||||||||||| ||| | |||||||
Sbjct: 86885 agctgcaagcagcatcagacatgtatgataaagacttgcaaagattgcccttgtcttttg 86944
Query: 1528 agaatatctaggcattatgttccacca--catggaacagagc--agatcagaagaagcag 1583
| ||||||||| ||| | | ||| ||||||||||||| ||||||||||||||||
Sbjct: 86945 aacatatctaggtgcaatgctacgccatgcatggaacagagcagagatcagaagaagcag 87004
Query: 1584 aaact 1588
|||||
Sbjct: 87005 aaact 87009
Score = 178 bits (90), Expect = 8e-042
Identities = 159/182 (87%)
Strand = Plus / Plus
Query: 1152 ttctactgggatggtactaatcctagcagcagtagcagtactgggagcagagggagcaac 1211
||||||||||||||| | |||||||||||||| |||||||||||||||| || ||||||
Sbjct: 86557 ttctactgggatggttccaatcctagcagcagcggcagtactgggagcagcggaagcaac 86616
Query: 1212 agtatgggatttgaaccacagagcacgagcacaattctggagaacagtgtcttcccatgg 1271
||||||||||| || ||||||||||| | | ||||| ||||||||||||| |||||||||
Sbjct: 86617 agtatgggattcgagccacagagcacaacctcaattttggagaacagtgtattcccatgg 86676
Query: 1272 acagacattggacaagaaaaagatacaagggctcacctagtagcggaacttaagtggcct 1331
||||| || |||||||| |||||||| || | |||| |||| | |||||| |||||||||
Sbjct: 86677 acagatatcggacaagagaaagataccagagttcacttagtggaggaactcaagtggcct 86736
Query: 1332 ga 1333
||
Sbjct: 86737 ga 86738
Score = 145 bits (73), Expect = 1e-031
Identities = 118/133 (88%)
Strand = Plus / Plus
Query: 390 gggcttcaaaggtgcggaaagagttgtaggctgaggtggataaactatctgaggccagac 449
||||| ||||| ||||| ||||| || ||||||||||||||||||||||||||||| |||
Sbjct: 85699 gggctccaaagatgcggcaagagctgcaggctgaggtggataaactatctgaggcctgac 85758
Query: 450 ctcaagagaggggcattcgcccaagacgaagaagacctcatcatcgagctgcacgctgtc 509
||||||||||| |||||| | || || ||||||||||||||||| ||||| || ||||||
Sbjct: 85759 ctcaagagaggtgcattctctcaggaggaagaagacctcatcattgagctccatgctgtc 85818
Query: 510 ctcgggaacaggt 522
|| ||||||||||
Sbjct: 85819 cttgggaacaggt 85831
Score = 93.7 bits (47), Expect = 4e-016
Identities = 208/255 (81%), Gaps = 20/255 (7%)
Strand = Plus / Plus
Query: 1745 ataggaaagtatgttctagagtctcctttcctttctcttgaaaattgatgttttccttct 1804
|||| |||||| |||||||||||||| | | |||||||||||| ||| |||||| |
Sbjct: 87157 atagaaaagtacgttctagagtctccct-cttttctcttgaaatttgctgttttt----t 87211
Query: 1805 gtacacgac---tgaacttttgcatatttgagtttttgttctctctggtggaaattaaat 1861
||||||||| | |||||||| ||| ||||||||| |||| ||||| | || ||||
Sbjct: 87212 gtacacgacaactcaacttttggatacttgagttttggttcactctgttt---atcaaat 87268
Query: 1862 aaatatagatagccataggcaaaaatgcatgtgtcggtagctctcaa----cgtgcaagt 1917
||||||||| | ||| ||||||| ||||||||||||||||||| | | |||||
Sbjct: 87269 aaatatagacacgcatgggcaaaa---catgtgtcggtagctctcacaaaccatacaagt 87325
Query: 1918 agccccaaacttt-caactgctgccatgcatgtccatgcaaattaattattgcatgttgt 1976
|| ||||| |||| |||||||| ||||||| || ||||||||||||||||||||||||||
Sbjct: 87326 agtcccaagcttttcaactgctaccatgcacgtacatgcaaattaattattgcatgttgt 87385
Query: 1977 atttttcatttcttt 1991
|||||| ||||||||
Sbjct: 87386 attttt-atttcttt 87399
Score = 81.8 bits (41), Expect = 1e-012
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 5 cctttccttgctttccactgaaatctcctatctgcagccatgcagttgctcaatcctggc 64
||||||| |||||||||||||||||||||||| ||| |||| |||||||||||| ||||
Sbjct: 85169 cctttccctgctttccactgaaatctcctatccgcaaccatacagttgctcaattctggt 85228
Query: 65 ctcag 69
|||||
Sbjct: 85229 ctcag 85233
>gb|AACV01010857.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg010857, whole
genome shotgun sequence
Length = 29601
Score = 543 bits (274), Expect = e-151
Identities = 529/614 (86%)
Strand = Plus / Minus
Query: 519 aggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatcta 578
||||||||||| |||||||| |||||||| ||||||||||| || ||||||||||||||
Sbjct: 9852 aggtggtctcagattgcagctcagctgcctgggaggactgacaacgagatcaagaatctc 9793
Query: 579 tggaactcgtgcatcaagaagaagctgaggcagaaaggcattgatcccaacacccacaag 638
||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 9792 tggaattcttgcatcaagaagaagctccggcagaaaggcattgatcccaacacccacaag 9733
Query: 639 ccacttactgaggctgatcacggcggtgcagctcccaccatcagcaccgagagaacctca 698
|| || || |||||||||| | | || ||||| ||||| ||||||||||||| ||||||
Sbjct: 9732 cccctcaccgaggctgatcgcaggggagcagcacccacagtcagcaccgagaggacctca 9673
Query: 699 gggtccagcgacatcaacccatcaagcactggtcctctggggaacttgagccccctcctc 758
|||||||||||| ||||||| ||||| ||||| |||| ||||||||||||| |||||||
Sbjct: 9672 gggtccagcgacgtcaacccgtcaagtgctggtgctctagggaacttgagccacctcctc 9613
Query: 759 agcgagacggctcaatcatcaatgctgatgcccgtgtacgacaagaatcgtgctgaaaca 818
|||||||| || ||||||||||||||| |||| ||||| || ||||||| |||||||
Sbjct: 9612 agcgagacagcacaatcatcaatgctgctgccggtgtatgataagaatcaccctgaaact 9553
Query: 819 ccaaacttggcacgccctaagctgccaccaaaggagctgttcctggagcagcttactgct 878
||| |||| ||||||||||| |||||||||||||| |||| || || |||||||||||
Sbjct: 9552 gcaagcttgccacgccctaaggtgccaccaaaggagttgtttcttgaccagcttactgcc 9493
Query: 879 ggacacgagagtccatcaacctgccactcatcaggccaaactctctatttccctttccaa 938
|| |||||||| ||||||| |||| ||||||||| | ||| || ||||| ||||||||
Sbjct: 9492 ggtcacgagagcccatcaagttgccgctcatcaggtccaaccctgtattttcctttccag 9433
Query: 939 cagcccttaggctacaacagtgagagtggcagcagcgatggggcgaatatgaattcactc 998
|| || |||||||||| | ||| |||||| | ||||| |||| |||||||||||||
Sbjct: 9432 caaccattaggctacagtaatgaatgtggcactggggatggtgcgagtatgaattcactc 9373
Query: 999 tggttcaaccagagtgacttcaactgcagcacaatttctacagtgatgccgccagtttca 1058
||||||||||||| ||| ||||||||||||||||| || || |||||||| |||||||||
Sbjct: 9372 tggttcaaccagaatgatttcaactgcagcacaatctccaccgtgatgccaccagtttca 9313
Query: 1059 ccatcggccctctctacatcaatggggctgaatcttccacctgataatcctcgacatgga 1118
||||| |||||||| ||||||||||||||||||||||| || || |||||||| || |||
Sbjct: 9312 ccatcagccctctcaacatcaatggggctgaatcttcccccagaaaatcctcgtcacgga 9253
Query: 1119 ggaactggcattgg 1132
|| |||||||||||
Sbjct: 9252 ggcactggcattgg 9239
Score = 212 bits (107), Expect = 5e-052
Identities = 143/155 (92%)
Strand = Plus / Minus
Query: 231 agctcccaggttctgcattgcgttgagatggggaggcattcttgctgctacaagcagaag 290
|||||| |||| ||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 10376 agctccgaggtcctgcattgcactgaaatggggaggcattcttgctgctacaagcagaaa 10317
Query: 291 ctgagaaaggggctctggtcccctgaggaggatgagaaactcatgaatcacataacaaag 350
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 10316 ttgaggaaggggctctggtcccctgaggaggatgagaagctcatgaatcacataaccaag 10257
Query: 351 catggccatggctgctggagctctgttcccaaact 385
|||||||||||||||||||| |||||||| |||||
Sbjct: 10256 catggccatggctgctggagttctgttcctaaact 10222
Score = 204 bits (103), Expect = 1e-049
Identities = 211/245 (86%), Gaps = 4/245 (1%)
Strand = Plus / Minus
Query: 1348 cgaccacagtcatgcagaaccagagccaaacgctttatgatgatgtgatcaaggcagaga 1407
|||| |||| ||||||||||||||||||| | | || ||||||||||||||||||||||
Sbjct: 9020 cgacgacagccatgcagaaccagagccaatcattatacgatgatgtgatcaaggcagaga 8961
Query: 1408 gccaattcaacatagaagggatatgtgcttcttggttccagaatcagcagccacagcaac 1467
||||||||||||| |||||||||||||| |||||||||||||||||||| ||||| ||||
Sbjct: 8960 gccaattcaacatggaagggatatgtgcctcttggttccagaatcagcaaccacaacaac 8901
Query: 1468 agctgcaggtagcaccagacatgtatgacaaggacttgcaaagaatgcaactatcttttg 1527
||||||| | |||| ||||||||||||| || |||||||||||| ||| | |||||||
Sbjct: 8900 agctgcaagcagcatcagacatgtatgataaagacttgcaaagattgcccttgtcttttg 8841
Query: 1528 agaatatctaggcattatgttccacca--catggaacagagc--agatcagaagaagcag 1583
| ||||||||| ||| | | ||| ||||||||||||| ||||||||||||||||
Sbjct: 8840 aacatatctaggtgcaatgctacgccatgcatggaacagagcagagatcagaagaagcag 8781
Query: 1584 aaact 1588
|||||
Sbjct: 8780 aaact 8776
Score = 178 bits (90), Expect = 8e-042
Identities = 159/182 (87%)
Strand = Plus / Minus
Query: 1152 ttctactgggatggtactaatcctagcagcagtagcagtactgggagcagagggagcaac 1211
||||||||||||||| | |||||||||||||| |||||||||||||||| || ||||||
Sbjct: 9228 ttctactgggatggttccaatcctagcagcagcggcagtactgggagcagcggaagcaac 9169
Query: 1212 agtatgggatttgaaccacagagcacgagcacaattctggagaacagtgtcttcccatgg 1271
||||||||||| || ||||||||||| | | ||||| ||||||||||||| |||||||||
Sbjct: 9168 agtatgggattcgagccacagagcacaacctcaattttggagaacagtgtattcccatgg 9109
Query: 1272 acagacattggacaagaaaaagatacaagggctcacctagtagcggaacttaagtggcct 1331
||||| || |||||||| |||||||| || | |||| |||| | |||||| |||||||||
Sbjct: 9108 acagatatcggacaagagaaagataccagagttcacttagtggaggaactcaagtggcct 9049
Query: 1332 ga 1333
||
Sbjct: 9048 ga 9047
Score = 145 bits (73), Expect = 1e-031
Identities = 118/133 (88%)
Strand = Plus / Minus
Query: 390 gggcttcaaaggtgcggaaagagttgtaggctgaggtggataaactatctgaggccagac 449
||||| ||||| ||||| ||||| || ||||||||||||||||||||||||||||| |||
Sbjct: 10086 gggctccaaagatgcggcaagagctgcaggctgaggtggataaactatctgaggcctgac 10027
Query: 450 ctcaagagaggggcattcgcccaagacgaagaagacctcatcatcgagctgcacgctgtc 509
||||||||||| |||||| | || || ||||||||||||||||| ||||| || ||||||
Sbjct: 10026 ctcaagagaggtgcattctctcaggaggaagaagacctcatcattgagctccatgctgtc 9967
Query: 510 ctcgggaacaggt 522
|| ||||||||||
Sbjct: 9966 cttgggaacaggt 9954
Score = 93.7 bits (47), Expect = 4e-016
Identities = 208/255 (81%), Gaps = 20/255 (7%)
Strand = Plus / Minus
Query: 1745 ataggaaagtatgttctagagtctcctttcctttctcttgaaaattgatgttttccttct 1804
|||| |||||| |||||||||||||| | | |||||||||||| ||| |||||| |
Sbjct: 8628 atagaaaagtacgttctagagtctccct-cttttctcttgaaatttgctgttttt----t 8574
Query: 1805 gtacacgac---tgaacttttgcatatttgagtttttgttctctctggtggaaattaaat 1861
||||||||| | |||||||| ||| ||||||||| |||| ||||| | || ||||
Sbjct: 8573 gtacacgacaactcaacttttggatacttgagttttggttcactctgttt---atcaaat 8517
Query: 1862 aaatatagatagccataggcaaaaatgcatgtgtcggtagctctcaa----cgtgcaagt 1917
||||||||| | ||| ||||||| ||||||||||||||||||| | | |||||
Sbjct: 8516 aaatatagacacgcatgggcaaaa---catgtgtcggtagctctcacaaaccatacaagt 8460
Query: 1918 agccccaaacttt-caactgctgccatgcatgtccatgcaaattaattattgcatgttgt 1976
|| ||||| |||| |||||||| ||||||| || ||||||||||||||||||||||||||
Sbjct: 8459 agtcccaagcttttcaactgctaccatgcacgtacatgcaaattaattattgcatgttgt 8400
Query: 1977 atttttcatttcttt 1991
|||||| ||||||||
Sbjct: 8399 attttt-atttcttt 8386
Score = 81.8 bits (41), Expect = 1e-012
Identities = 59/65 (90%)
Strand = Plus / Minus
Query: 5 cctttccttgctttccactgaaatctcctatctgcagccatgcagttgctcaatcctggc 64
||||||| |||||||||||||||||||||||| ||| |||| |||||||||||| ||||
Sbjct: 10616 cctttccctgctttccactgaaatctcctatccgcaaccatacagttgctcaattctggt 10557
Query: 65 ctcag 69
|||||
Sbjct: 10556 ctcag 10552
>ref|NT_107216.1| Oryza sativa (japonica cultivar-group)
Length = 2910826
Score = 543 bits (274), Expect = e-151
Identities = 529/614 (86%)
Strand = Plus / Plus
Query: 519 aggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatcta 578
||||||||||| |||||||| |||||||| ||||||||||| || ||||||||||||||
Sbjct: 1343889 aggtggtctcagattgcagctcagctgcctgggaggactgacaacgagatcaagaatctc 1343948
Query: 579 tggaactcgtgcatcaagaagaagctgaggcagaaaggcattgatcccaacacccacaag 638
||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1343949 tggaattcttgcatcaagaagaagctccggcagaaaggcattgatcccaacacccacaag 1344008
Query: 639 ccacttactgaggctgatcacggcggtgcagctcccaccatcagcaccgagagaacctca 698
|| || || |||||||||| | | || ||||| ||||| ||||||||||||| ||||||
Sbjct: 1344009 cccctcaccgaggctgatcgcaggggagcagcacccacagtcagcaccgagaggacctca 1344068
Query: 699 gggtccagcgacatcaacccatcaagcactggtcctctggggaacttgagccccctcctc 758
|||||||||||| ||||||| ||||| ||||| |||| ||||||||||||| |||||||
Sbjct: 1344069 gggtccagcgacgtcaacccgtcaagtgctggtgctctagggaacttgagccacctcctc 1344128
Query: 759 agcgagacggctcaatcatcaatgctgatgcccgtgtacgacaagaatcgtgctgaaaca 818
|||||||| || ||||||||||||||| |||| ||||| || ||||||| |||||||
Sbjct: 1344129 agcgagacagcacaatcatcaatgctgctgccggtgtatgataagaatcaccctgaaact 1344188
Query: 819 ccaaacttggcacgccctaagctgccaccaaaggagctgttcctggagcagcttactgct 878
||| |||| ||||||||||| |||||||||||||| |||| || || |||||||||||
Sbjct: 1344189 gcaagcttgccacgccctaaggtgccaccaaaggagttgtttcttgaccagcttactgcc 1344248
Query: 879 ggacacgagagtccatcaacctgccactcatcaggccaaactctctatttccctttccaa 938
|| |||||||| ||||||| |||| ||||||||| | ||| || ||||| ||||||||
Sbjct: 1344249 ggtcacgagagcccatcaagttgccgctcatcaggtccaaccctgtattttcctttccag 1344308
Query: 939 cagcccttaggctacaacagtgagagtggcagcagcgatggggcgaatatgaattcactc 998
|| || |||||||||| | ||| |||||| | ||||| |||| |||||||||||||
Sbjct: 1344309 caaccattaggctacagtaatgaatgtggcactggggatggtgcgagtatgaattcactc 1344368
Query: 999 tggttcaaccagagtgacttcaactgcagcacaatttctacagtgatgccgccagtttca 1058
||||||||||||| ||| ||||||||||||||||| || || |||||||| |||||||||
Sbjct: 1344369 tggttcaaccagaatgatttcaactgcagcacaatctccaccgtgatgccaccagtttca 1344428
Query: 1059 ccatcggccctctctacatcaatggggctgaatcttccacctgataatcctcgacatgga 1118
||||| |||||||| ||||||||||||||||||||||| || || |||||||| || |||
Sbjct: 1344429 ccatcagccctctcaacatcaatggggctgaatcttcccccagaaaatcctcgtcacgga 1344488
Query: 1119 ggaactggcattgg 1132
|| |||||||||||
Sbjct: 1344489 ggcactggcattgg 1344502
Score = 212 bits (107), Expect = 5e-052
Identities = 143/155 (92%)
Strand = Plus / Plus
Query: 231 agctcccaggttctgcattgcgttgagatggggaggcattcttgctgctacaagcagaag 290
|||||| |||| ||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 1343365 agctccgaggtcctgcattgcactgaaatggggaggcattcttgctgctacaagcagaaa 1343424
Query: 291 ctgagaaaggggctctggtcccctgaggaggatgagaaactcatgaatcacataacaaag 350
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 1343425 ttgaggaaggggctctggtcccctgaggaggatgagaagctcatgaatcacataaccaag 1343484
Query: 351 catggccatggctgctggagctctgttcccaaact 385
|||||||||||||||||||| |||||||| |||||
Sbjct: 1343485 catggccatggctgctggagttctgttcctaaact 1343519
Score = 204 bits (103), Expect = 1e-049
Identities = 211/245 (86%), Gaps = 4/245 (1%)
Strand = Plus / Plus
Query: 1348 cgaccacagtcatgcagaaccagagccaaacgctttatgatgatgtgatcaaggcagaga 1407
|||| |||| ||||||||||||||||||| | | || ||||||||||||||||||||||
Sbjct: 1344721 cgacgacagccatgcagaaccagagccaatcattatacgatgatgtgatcaaggcagaga 1344780
Query: 1408 gccaattcaacatagaagggatatgtgcttcttggttccagaatcagcagccacagcaac 1467
||||||||||||| |||||||||||||| |||||||||||||||||||| ||||| ||||
Sbjct: 1344781 gccaattcaacatggaagggatatgtgcctcttggttccagaatcagcaaccacaacaac 1344840
Query: 1468 agctgcaggtagcaccagacatgtatgacaaggacttgcaaagaatgcaactatcttttg 1527
||||||| | |||| ||||||||||||| || |||||||||||| ||| | |||||||
Sbjct: 1344841 agctgcaagcagcatcagacatgtatgataaagacttgcaaagattgcccttgtcttttg 1344900
Query: 1528 agaatatctaggcattatgttccacca--catggaacagagc--agatcagaagaagcag 1583
| ||||||||| ||| | | ||| ||||||||||||| ||||||||||||||||
Sbjct: 1344901 aacatatctaggtgcaatgctacgccatgcatggaacagagcagagatcagaagaagcag 1344960
Query: 1584 aaact 1588
|||||
Sbjct: 1344961 aaact 1344965
Score = 178 bits (90), Expect = 8e-042
Identities = 159/182 (87%)
Strand = Plus / Plus
Query: 1152 ttctactgggatggtactaatcctagcagcagtagcagtactgggagcagagggagcaac 1211
||||||||||||||| | |||||||||||||| |||||||||||||||| || ||||||
Sbjct: 1344513 ttctactgggatggttccaatcctagcagcagcggcagtactgggagcagcggaagcaac 1344572
Query: 1212 agtatgggatttgaaccacagagcacgagcacaattctggagaacagtgtcttcccatgg 1271
||||||||||| || ||||||||||| | | ||||| ||||||||||||| |||||||||
Sbjct: 1344573 agtatgggattcgagccacagagcacaacctcaattttggagaacagtgtattcccatgg 1344632
Query: 1272 acagacattggacaagaaaaagatacaagggctcacctagtagcggaacttaagtggcct 1331
||||| || |||||||| |||||||| || | |||| |||| | |||||| |||||||||
Sbjct: 1344633 acagatatcggacaagagaaagataccagagttcacttagtggaggaactcaagtggcct 1344692
Query: 1332 ga 1333
||
Sbjct: 1344693 ga 1344694
Score = 145 bits (73), Expect = 1e-031
Identities = 118/133 (88%)
Strand = Plus / Plus
Query: 390 gggcttcaaaggtgcggaaagagttgtaggctgaggtggataaactatctgaggccagac 449
||||| ||||| ||||| ||||| || ||||||||||||||||||||||||||||| |||
Sbjct: 1343655 gggctccaaagatgcggcaagagctgcaggctgaggtggataaactatctgaggcctgac 1343714
Query: 450 ctcaagagaggggcattcgcccaagacgaagaagacctcatcatcgagctgcacgctgtc 509
||||||||||| |||||| | || || ||||||||||||||||| ||||| || ||||||
Sbjct: 1343715 ctcaagagaggtgcattctctcaggaggaagaagacctcatcattgagctccatgctgtc 1343774
Query: 510 ctcgggaacaggt 522
|| ||||||||||
Sbjct: 1343775 cttgggaacaggt 1343787
Score = 93.7 bits (47), Expect = 4e-016
Identities = 208/255 (81%), Gaps = 20/255 (7%)
Strand = Plus / Plus
Query: 1745 ataggaaagtatgttctagagtctcctttcctttctcttgaaaattgatgttttccttct 1804
|||| |||||| |||||||||||||| | | |||||||||||| ||| |||||| |
Sbjct: 1345113 atagaaaagtacgttctagagtctccct-cttttctcttgaaatttgctgttttt----t 1345167
Query: 1805 gtacacgac---tgaacttttgcatatttgagtttttgttctctctggtggaaattaaat 1861
||||||||| | |||||||| ||| ||||||||| |||| ||||| | || ||||
Sbjct: 1345168 gtacacgacaactcaacttttggatacttgagttttggttcactctgttt---atcaaat 1345224
Query: 1862 aaatatagatagccataggcaaaaatgcatgtgtcggtagctctcaa----cgtgcaagt 1917
||||||||| | ||| ||||||| ||||||||||||||||||| | | |||||
Sbjct: 1345225 aaatatagacacgcatgggcaaaa---catgtgtcggtagctctcacaaaccatacaagt 1345281
Query: 1918 agccccaaacttt-caactgctgccatgcatgtccatgcaaattaattattgcatgttgt 1976
|| ||||| |||| |||||||| ||||||| || ||||||||||||||||||||||||||
Sbjct: 1345282 agtcccaagcttttcaactgctaccatgcacgtacatgcaaattaattattgcatgttgt 1345341
Query: 1977 atttttcatttcttt 1991
|||||| ||||||||
Sbjct: 1345342 attttt-atttcttt 1345355
Score = 81.8 bits (41), Expect = 1e-012
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 5 cctttccttgctttccactgaaatctcctatctgcagccatgcagttgctcaatcctggc 64
||||||| |||||||||||||||||||||||| ||| |||| |||||||||||| ||||
Sbjct: 1343125 cctttccctgctttccactgaaatctcctatccgcaaccatacagttgctcaattctggt 1343184
Query: 65 ctcag 69
|||||
Sbjct: 1343185 ctcag 1343189
>gb|CH401191.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000028 genomic
scaffold, whole genome shotgun sequence
Length = 7678539
Score = 543 bits (274), Expect = e-151
Identities = 529/614 (86%)
Strand = Plus / Plus
Query: 519 aggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatcta 578
||||||||||| |||||||| |||||||| ||||||||||| || ||||||||||||||
Sbjct: 2289685 aggtggtctcagattgcagctcagctgcctgggaggactgacaacgagatcaagaatctc 2289744
Query: 579 tggaactcgtgcatcaagaagaagctgaggcagaaaggcattgatcccaacacccacaag 638
||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 2289745 tggaattcttgcatcaagaagaagctccggcagaaaggcattgatcccaacacccacaag 2289804
Query: 639 ccacttactgaggctgatcacggcggtgcagctcccaccatcagcaccgagagaacctca 698
|| || || |||||||||| | | || ||||| ||||| ||||||||||||| ||||||
Sbjct: 2289805 cccctcaccgaggctgatcgcaggggagcagcacccacagtcagcaccgagaggacctca 2289864
Query: 699 gggtccagcgacatcaacccatcaagcactggtcctctggggaacttgagccccctcctc 758
|||||||||||| ||||||| ||||| ||||| |||| ||||||||||||| |||||||
Sbjct: 2289865 gggtccagcgacgtcaacccgtcaagtgctggtgctctagggaacttgagccacctcctc 2289924
Query: 759 agcgagacggctcaatcatcaatgctgatgcccgtgtacgacaagaatcgtgctgaaaca 818
|||||||| || ||||||||||||||| |||| ||||| || ||||||| |||||||
Sbjct: 2289925 agcgagacagcacaatcatcaatgctgctgccggtgtatgataagaatcaccctgaaact 2289984
Query: 819 ccaaacttggcacgccctaagctgccaccaaaggagctgttcctggagcagcttactgct 878
||| |||| ||||||||||| |||||||||||||| |||| || || |||||||||||
Sbjct: 2289985 gcaagcttgccacgccctaaggtgccaccaaaggagttgtttcttgaccagcttactgcc 2290044
Query: 879 ggacacgagagtccatcaacctgccactcatcaggccaaactctctatttccctttccaa 938
|| |||||||| ||||||| |||| ||||||||| | ||| || ||||| ||||||||
Sbjct: 2290045 ggtcacgagagcccatcaagttgccgctcatcaggtccaaccctgtattttcctttccag 2290104
Query: 939 cagcccttaggctacaacagtgagagtggcagcagcgatggggcgaatatgaattcactc 998
|| || |||||||||| | ||| |||||| | ||||| |||| |||||||||||||
Sbjct: 2290105 caaccattaggctacagtaatgaatgtggcactggggatggtgcgagtatgaattcactc 2290164
Query: 999 tggttcaaccagagtgacttcaactgcagcacaatttctacagtgatgccgccagtttca 1058
||||||||||||| ||| ||||||||||||||||| || || |||||||| |||||||||
Sbjct: 2290165 tggttcaaccagaatgatttcaactgcagcacaatctccaccgtgatgccaccagtttca 2290224
Query: 1059 ccatcggccctctctacatcaatggggctgaatcttccacctgataatcctcgacatgga 1118
||||| |||||||| ||||||||||||||||||||||| || || |||||||| || |||
Sbjct: 2290225 ccatcagccctctcaacatcaatggggctgaatcttcccccagaaaatcctcgtcacgga 2290284
Query: 1119 ggaactggcattgg 1132
|| |||||||||||
Sbjct: 2290285 ggcactggcattgg 2290298
Score = 212 bits (107), Expect = 5e-052
Identities = 143/155 (92%)
Strand = Plus / Plus
Query: 231 agctcccaggttctgcattgcgttgagatggggaggcattcttgctgctacaagcagaag 290
|||||| |||| ||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 2289161 agctccgaggtcctgcattgcactgaaatggggaggcattcttgctgctacaagcagaaa 2289220
Query: 291 ctgagaaaggggctctggtcccctgaggaggatgagaaactcatgaatcacataacaaag 350
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 2289221 ttgaggaaggggctctggtcccctgaggaggatgagaagctcatgaatcacataaccaag 2289280
Query: 351 catggccatggctgctggagctctgttcccaaact 385
|||||||||||||||||||| |||||||| |||||
Sbjct: 2289281 catggccatggctgctggagttctgttcctaaact 2289315
Score = 204 bits (103), Expect = 1e-049
Identities = 211/245 (86%), Gaps = 4/245 (1%)
Strand = Plus / Plus
Query: 1348 cgaccacagtcatgcagaaccagagccaaacgctttatgatgatgtgatcaaggcagaga 1407
|||| |||| ||||||||||||||||||| | | || ||||||||||||||||||||||
Sbjct: 2290517 cgacgacagccatgcagaaccagagccaatcattatacgatgatgtgatcaaggcagaga 2290576
Query: 1408 gccaattcaacatagaagggatatgtgcttcttggttccagaatcagcagccacagcaac 1467
||||||||||||| |||||||||||||| |||||||||||||||||||| ||||| ||||
Sbjct: 2290577 gccaattcaacatggaagggatatgtgcctcttggttccagaatcagcaaccacaacaac 2290636
Query: 1468 agctgcaggtagcaccagacatgtatgacaaggacttgcaaagaatgcaactatcttttg 1527
||||||| | |||| ||||||||||||| || |||||||||||| ||| | |||||||
Sbjct: 2290637 agctgcaagcagcatcagacatgtatgataaagacttgcaaagattgcccttgtcttttg 2290696
Query: 1528 agaatatctaggcattatgttccacca--catggaacagagc--agatcagaagaagcag 1583
| ||||||||| ||| | | ||| ||||||||||||| ||||||||||||||||
Sbjct: 2290697 aacatatctaggtgcaatgctacgccatgcatggaacagagcagagatcagaagaagcag 2290756
Query: 1584 aaact 1588
|||||
Sbjct: 2290757 aaact 2290761
Score = 178 bits (90), Expect = 8e-042
Identities = 159/182 (87%)
Strand = Plus / Plus
Query: 1152 ttctactgggatggtactaatcctagcagcagtagcagtactgggagcagagggagcaac 1211
||||||||||||||| | |||||||||||||| |||||||||||||||| || ||||||
Sbjct: 2290309 ttctactgggatggttccaatcctagcagcagcggcagtactgggagcagcggaagcaac 2290368
Query: 1212 agtatgggatttgaaccacagagcacgagcacaattctggagaacagtgtcttcccatgg 1271
||||||||||| || ||||||||||| | | ||||| ||||||||||||| |||||||||
Sbjct: 2290369 agtatgggattcgagccacagagcacaacctcaattttggagaacagtgtattcccatgg 2290428
Query: 1272 acagacattggacaagaaaaagatacaagggctcacctagtagcggaacttaagtggcct 1331
||||| || |||||||| |||||||| || | |||| |||| | |||||| |||||||||
Sbjct: 2290429 acagatatcggacaagagaaagataccagagttcacttagtggaggaactcaagtggcct 2290488
Query: 1332 ga 1333
||
Sbjct: 2290489 ga 2290490
Score = 145 bits (73), Expect = 1e-031
Identities = 118/133 (88%)
Strand = Plus / Plus
Query: 390 gggcttcaaaggtgcggaaagagttgtaggctgaggtggataaactatctgaggccagac 449
||||| ||||| ||||| ||||| || ||||||||||||||||||||||||||||| |||
Sbjct: 2289451 gggctccaaagatgcggcaagagctgcaggctgaggtggataaactatctgaggcctgac 2289510
Query: 450 ctcaagagaggggcattcgcccaagacgaagaagacctcatcatcgagctgcacgctgtc 509
||||||||||| |||||| | || || ||||||||||||||||| ||||| || ||||||
Sbjct: 2289511 ctcaagagaggtgcattctctcaggaggaagaagacctcatcattgagctccatgctgtc 2289570
Query: 510 ctcgggaacaggt 522
|| ||||||||||
Sbjct: 2289571 cttgggaacaggt 2289583
Score = 93.7 bits (47), Expect = 4e-016
Identities = 208/255 (81%), Gaps = 20/255 (7%)
Strand = Plus / Plus
Query: 1745 ataggaaagtatgttctagagtctcctttcctttctcttgaaaattgatgttttccttct 1804
|||| |||||| |||||||||||||| | | |||||||||||| ||| |||||| |
Sbjct: 2290909 atagaaaagtacgttctagagtctccct-cttttctcttgaaatttgctgttttt----t 2290963
Query: 1805 gtacacgac---tgaacttttgcatatttgagtttttgttctctctggtggaaattaaat 1861
||||||||| | |||||||| ||| ||||||||| |||| ||||| | || ||||
Sbjct: 2290964 gtacacgacaactcaacttttggatacttgagttttggttcactctgttt---atcaaat 2291020
Query: 1862 aaatatagatagccataggcaaaaatgcatgtgtcggtagctctcaa----cgtgcaagt 1917
||||||||| | ||| ||||||| ||||||||||||||||||| | | |||||
Sbjct: 2291021 aaatatagacacgcatgggcaaaa---catgtgtcggtagctctcacaaaccatacaagt 2291077
Query: 1918 agccccaaacttt-caactgctgccatgcatgtccatgcaaattaattattgcatgttgt 1976
|| ||||| |||| |||||||| ||||||| || ||||||||||||||||||||||||||
Sbjct: 2291078 agtcccaagcttttcaactgctaccatgcacgtacatgcaaattaattattgcatgttgt 2291137
Query: 1977 atttttcatttcttt 1991
|||||| ||||||||
Sbjct: 2291138 attttt-atttcttt 2291151
Score = 81.8 bits (41), Expect = 1e-012
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 5 cctttccttgctttccactgaaatctcctatctgcagccatgcagttgctcaatcctggc 64
||||||| |||||||||||||||||||||||| ||| |||| |||||||||||| ||||
Sbjct: 2288921 cctttccctgctttccactgaaatctcctatccgcaaccatacagttgctcaattctggt 2288980
Query: 65 ctcag 69
|||||
Sbjct: 2288981 ctcag 2288985
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 543 bits (274), Expect = e-151
Identities = 529/614 (86%)
Strand = Plus / Plus
Query: 519 aggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatcta 578
||||||||||| |||||||| |||||||| ||||||||||| || ||||||||||||||
Sbjct: 2289685 aggtggtctcagattgcagctcagctgcctgggaggactgacaacgagatcaagaatctc 2289744
Query: 579 tggaactcgtgcatcaagaagaagctgaggcagaaaggcattgatcccaacacccacaag 638
||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 2289745 tggaattcttgcatcaagaagaagctccggcagaaaggcattgatcccaacacccacaag 2289804
Query: 639 ccacttactgaggctgatcacggcggtgcagctcccaccatcagcaccgagagaacctca 698
|| || || |||||||||| | | || ||||| ||||| ||||||||||||| ||||||
Sbjct: 2289805 cccctcaccgaggctgatcgcaggggagcagcacccacagtcagcaccgagaggacctca 2289864
Query: 699 gggtccagcgacatcaacccatcaagcactggtcctctggggaacttgagccccctcctc 758
|||||||||||| ||||||| ||||| ||||| |||| ||||||||||||| |||||||
Sbjct: 2289865 gggtccagcgacgtcaacccgtcaagtgctggtgctctagggaacttgagccacctcctc 2289924
Query: 759 agcgagacggctcaatcatcaatgctgatgcccgtgtacgacaagaatcgtgctgaaaca 818
|||||||| || ||||||||||||||| |||| ||||| || ||||||| |||||||
Sbjct: 2289925 agcgagacagcacaatcatcaatgctgctgccggtgtatgataagaatcaccctgaaact 2289984
Query: 819 ccaaacttggcacgccctaagctgccaccaaaggagctgttcctggagcagcttactgct 878
||| |||| ||||||||||| |||||||||||||| |||| || || |||||||||||
Sbjct: 2289985 gcaagcttgccacgccctaaggtgccaccaaaggagttgtttcttgaccagcttactgcc 2290044
Query: 879 ggacacgagagtccatcaacctgccactcatcaggccaaactctctatttccctttccaa 938
|| |||||||| ||||||| |||| ||||||||| | ||| || ||||| ||||||||
Sbjct: 2290045 ggtcacgagagcccatcaagttgccgctcatcaggtccaaccctgtattttcctttccag 2290104
Query: 939 cagcccttaggctacaacagtgagagtggcagcagcgatggggcgaatatgaattcactc 998
|| || |||||||||| | ||| |||||| | ||||| |||| |||||||||||||
Sbjct: 2290105 caaccattaggctacagtaatgaatgtggcactggggatggtgcgagtatgaattcactc 2290164
Query: 999 tggttcaaccagagtgacttcaactgcagcacaatttctacagtgatgccgccagtttca 1058
||||||||||||| ||| ||||||||||||||||| || || |||||||| |||||||||
Sbjct: 2290165 tggttcaaccagaatgatttcaactgcagcacaatctccaccgtgatgccaccagtttca 2290224
Query: 1059 ccatcggccctctctacatcaatggggctgaatcttccacctgataatcctcgacatgga 1118
||||| |||||||| ||||||||||||||||||||||| || || |||||||| || |||
Sbjct: 2290225 ccatcagccctctcaacatcaatggggctgaatcttcccccagaaaatcctcgtcacgga 2290284
Query: 1119 ggaactggcattgg 1132
|| |||||||||||
Sbjct: 2290285 ggcactggcattgg 2290298
Score = 212 bits (107), Expect = 5e-052
Identities = 143/155 (92%)
Strand = Plus / Plus
Query: 231 agctcccaggttctgcattgcgttgagatggggaggcattcttgctgctacaagcagaag 290
|||||| |||| ||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 2289161 agctccgaggtcctgcattgcactgaaatggggaggcattcttgctgctacaagcagaaa 2289220
Query: 291 ctgagaaaggggctctggtcccctgaggaggatgagaaactcatgaatcacataacaaag 350
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 2289221 ttgaggaaggggctctggtcccctgaggaggatgagaagctcatgaatcacataaccaag 2289280
Query: 351 catggccatggctgctggagctctgttcccaaact 385
|||||||||||||||||||| |||||||| |||||
Sbjct: 2289281 catggccatggctgctggagttctgttcctaaact 2289315
Score = 204 bits (103), Expect = 1e-049
Identities = 211/245 (86%), Gaps = 4/245 (1%)
Strand = Plus / Plus
Query: 1348 cgaccacagtcatgcagaaccagagccaaacgctttatgatgatgtgatcaaggcagaga 1407
|||| |||| ||||||||||||||||||| | | || ||||||||||||||||||||||
Sbjct: 2290517 cgacgacagccatgcagaaccagagccaatcattatacgatgatgtgatcaaggcagaga 2290576
Query: 1408 gccaattcaacatagaagggatatgtgcttcttggttccagaatcagcagccacagcaac 1467
||||||||||||| |||||||||||||| |||||||||||||||||||| ||||| ||||
Sbjct: 2290577 gccaattcaacatggaagggatatgtgcctcttggttccagaatcagcaaccacaacaac 2290636
Query: 1468 agctgcaggtagcaccagacatgtatgacaaggacttgcaaagaatgcaactatcttttg 1527
||||||| | |||| ||||||||||||| || |||||||||||| ||| | |||||||
Sbjct: 2290637 agctgcaagcagcatcagacatgtatgataaagacttgcaaagattgcccttgtcttttg 2290696
Query: 1528 agaatatctaggcattatgttccacca--catggaacagagc--agatcagaagaagcag 1583
| ||||||||| ||| | | ||| ||||||||||||| ||||||||||||||||
Sbjct: 2290697 aacatatctaggtgcaatgctacgccatgcatggaacagagcagagatcagaagaagcag 2290756
Query: 1584 aaact 1588
|||||
Sbjct: 2290757 aaact 2290761
Score = 178 bits (90), Expect = 8e-042
Identities = 159/182 (87%)
Strand = Plus / Plus
Query: 1152 ttctactgggatggtactaatcctagcagcagtagcagtactgggagcagagggagcaac 1211
||||||||||||||| | |||||||||||||| |||||||||||||||| || ||||||
Sbjct: 2290309 ttctactgggatggttccaatcctagcagcagcggcagtactgggagcagcggaagcaac 2290368
Query: 1212 agtatgggatttgaaccacagagcacgagcacaattctggagaacagtgtcttcccatgg 1271
||||||||||| || ||||||||||| | | ||||| ||||||||||||| |||||||||
Sbjct: 2290369 agtatgggattcgagccacagagcacaacctcaattttggagaacagtgtattcccatgg 2290428
Query: 1272 acagacattggacaagaaaaagatacaagggctcacctagtagcggaacttaagtggcct 1331
||||| || |||||||| |||||||| || | |||| |||| | |||||| |||||||||
Sbjct: 2290429 acagatatcggacaagagaaagataccagagttcacttagtggaggaactcaagtggcct 2290488
Query: 1332 ga 1333
||
Sbjct: 2290489 ga 2290490
Score = 145 bits (73), Expect = 1e-031
Identities = 118/133 (88%)
Strand = Plus / Plus
Query: 390 gggcttcaaaggtgcggaaagagttgtaggctgaggtggataaactatctgaggccagac 449
||||| ||||| ||||| ||||| || ||||||||||||||||||||||||||||| |||
Sbjct: 2289451 gggctccaaagatgcggcaagagctgcaggctgaggtggataaactatctgaggcctgac 2289510
Query: 450 ctcaagagaggggcattcgcccaagacgaagaagacctcatcatcgagctgcacgctgtc 509
||||||||||| |||||| | || || ||||||||||||||||| ||||| || ||||||
Sbjct: 2289511 ctcaagagaggtgcattctctcaggaggaagaagacctcatcattgagctccatgctgtc 2289570
Query: 510 ctcgggaacaggt 522
|| ||||||||||
Sbjct: 2289571 cttgggaacaggt 2289583
Score = 93.7 bits (47), Expect = 4e-016
Identities = 208/255 (81%), Gaps = 20/255 (7%)
Strand = Plus / Plus
Query: 1745 ataggaaagtatgttctagagtctcctttcctttctcttgaaaattgatgttttccttct 1804
|||| |||||| |||||||||||||| | | |||||||||||| ||| |||||| |
Sbjct: 2290909 atagaaaagtacgttctagagtctccct-cttttctcttgaaatttgctgttttt----t 2290963
Query: 1805 gtacacgac---tgaacttttgcatatttgagtttttgttctctctggtggaaattaaat 1861
||||||||| | |||||||| ||| ||||||||| |||| ||||| | || ||||
Sbjct: 2290964 gtacacgacaactcaacttttggatacttgagttttggttcactctgttt---atcaaat 2291020
Query: 1862 aaatatagatagccataggcaaaaatgcatgtgtcggtagctctcaa----cgtgcaagt 1917
||||||||| | ||| ||||||| ||||||||||||||||||| | | |||||
Sbjct: 2291021 aaatatagacacgcatgggcaaaa---catgtgtcggtagctctcacaaaccatacaagt 2291077
Query: 1918 agccccaaacttt-caactgctgccatgcatgtccatgcaaattaattattgcatgttgt 1976
|| ||||| |||| |||||||| ||||||| || ||||||||||||||||||||||||||
Sbjct: 2291078 agtcccaagcttttcaactgctaccatgcacgtacatgcaaattaattattgcatgttgt 2291137
Query: 1977 atttttcatttcttt 1991
|||||| ||||||||
Sbjct: 2291138 attttt-atttcttt 2291151
Score = 81.8 bits (41), Expect = 1e-012
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 5 cctttccttgctttccactgaaatctcctatctgcagccatgcagttgctcaatcctggc 64
||||||| |||||||||||||||||||||||| ||| |||| |||||||||||| ||||
Sbjct: 2288921 cctttccctgctttccactgaaatctcctatccgcaaccatacagttgctcaattctggt 2288980
Query: 65 ctcag 69
|||||
Sbjct: 2288981 ctcag 2288985
Score = 44.1 bits (22), Expect = 0.29
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 402 tgcggaaagagttgtaggctgaggtggataaactatctgaggccagacct 451
||||| ||||| || |||||| ||||||| ||||| || |||||||||||
Sbjct: 26502162 tgcggcaagagctgcaggctgcggtggatcaactacctcaggccagacct 26502211
Score = 42.1 bits (21), Expect = 1.1
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 518 caggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaa 574
||||||||||| || || | ||||||||| |||||||| || || |||||||||||
Sbjct: 20611839 caggtggtctctgatcgccgggcagctgccggggaggacggacaacgagatcaagaa 20611783
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 543 bits (274), Expect = e-151
Identities = 529/614 (86%)
Strand = Plus / Plus
Query: 519 aggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatcta 578
||||||||||| |||||||| |||||||| ||||||||||| || ||||||||||||||
Sbjct: 2253502 aggtggtctcagattgcagctcagctgcctgggaggactgacaacgagatcaagaatctc 2253561
Query: 579 tggaactcgtgcatcaagaagaagctgaggcagaaaggcattgatcccaacacccacaag 638
||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 2253562 tggaattcttgcatcaagaagaagctccggcagaaaggcattgatcccaacacccacaag 2253621
Query: 639 ccacttactgaggctgatcacggcggtgcagctcccaccatcagcaccgagagaacctca 698
|| || || |||||||||| | | || ||||| ||||| ||||||||||||| ||||||
Sbjct: 2253622 cccctcaccgaggctgatcgcaggggagcagcacccacagtcagcaccgagaggacctca 2253681
Query: 699 gggtccagcgacatcaacccatcaagcactggtcctctggggaacttgagccccctcctc 758
|||||||||||| ||||||| ||||| ||||| |||| ||||||||||||| |||||||
Sbjct: 2253682 gggtccagcgacgtcaacccgtcaagtgctggtgctctagggaacttgagccacctcctc 2253741
Query: 759 agcgagacggctcaatcatcaatgctgatgcccgtgtacgacaagaatcgtgctgaaaca 818
|||||||| || ||||||||||||||| |||| ||||| || ||||||| |||||||
Sbjct: 2253742 agcgagacagcacaatcatcaatgctgctgccggtgtatgataagaatcaccctgaaact 2253801
Query: 819 ccaaacttggcacgccctaagctgccaccaaaggagctgttcctggagcagcttactgct 878
||| |||| ||||||||||| |||||||||||||| |||| || || |||||||||||
Sbjct: 2253802 gcaagcttgccacgccctaaggtgccaccaaaggagttgtttcttgaccagcttactgcc 2253861
Query: 879 ggacacgagagtccatcaacctgccactcatcaggccaaactctctatttccctttccaa 938
|| |||||||| ||||||| |||| ||||||||| | ||| || ||||| ||||||||
Sbjct: 2253862 ggtcacgagagcccatcaagttgccgctcatcaggtccaaccctgtattttcctttccag 2253921
Query: 939 cagcccttaggctacaacagtgagagtggcagcagcgatggggcgaatatgaattcactc 998
|| || |||||||||| | ||| |||||| | ||||| |||| |||||||||||||
Sbjct: 2253922 caaccattaggctacagtaatgaatgtggcactggggatggtgcgagtatgaattcactc 2253981
Query: 999 tggttcaaccagagtgacttcaactgcagcacaatttctacagtgatgccgccagtttca 1058
||||||||||||| ||| ||||||||||||||||| || || |||||||| |||||||||
Sbjct: 2253982 tggttcaaccagaatgatttcaactgcagcacaatctccaccgtgatgccaccagtttca 2254041
Query: 1059 ccatcggccctctctacatcaatggggctgaatcttccacctgataatcctcgacatgga 1118
||||| |||||||| ||||||||||||||||||||||| || || |||||||| || |||
Sbjct: 2254042 ccatcagccctctcaacatcaatggggctgaatcttcccccagaaaatcctcgtcacgga 2254101
Query: 1119 ggaactggcattgg 1132
|| |||||||||||
Sbjct: 2254102 ggcactggcattgg 2254115
Score = 212 bits (107), Expect = 5e-052
Identities = 143/155 (92%)
Strand = Plus / Plus
Query: 231 agctcccaggttctgcattgcgttgagatggggaggcattcttgctgctacaagcagaag 290
|||||| |||| ||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 2252978 agctccgaggtcctgcattgcactgaaatggggaggcattcttgctgctacaagcagaaa 2253037
Query: 291 ctgagaaaggggctctggtcccctgaggaggatgagaaactcatgaatcacataacaaag 350
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 2253038 ttgaggaaggggctctggtcccctgaggaggatgagaagctcatgaatcacataaccaag 2253097
Query: 351 catggccatggctgctggagctctgttcccaaact 385
|||||||||||||||||||| |||||||| |||||
Sbjct: 2253098 catggccatggctgctggagttctgttcctaaact 2253132
Score = 204 bits (103), Expect = 1e-049
Identities = 211/245 (86%), Gaps = 4/245 (1%)
Strand = Plus / Plus
Query: 1348 cgaccacagtcatgcagaaccagagccaaacgctttatgatgatgtgatcaaggcagaga 1407
|||| |||| ||||||||||||||||||| | | || ||||||||||||||||||||||
Sbjct: 2254334 cgacgacagccatgcagaaccagagccaatcattatacgatgatgtgatcaaggcagaga 2254393
Query: 1408 gccaattcaacatagaagggatatgtgcttcttggttccagaatcagcagccacagcaac 1467
||||||||||||| |||||||||||||| |||||||||||||||||||| ||||| ||||
Sbjct: 2254394 gccaattcaacatggaagggatatgtgcctcttggttccagaatcagcaaccacaacaac 2254453
Query: 1468 agctgcaggtagcaccagacatgtatgacaaggacttgcaaagaatgcaactatcttttg 1527
||||||| | |||| ||||||||||||| || |||||||||||| ||| | |||||||
Sbjct: 2254454 agctgcaagcagcatcagacatgtatgataaagacttgcaaagattgcccttgtcttttg 2254513
Query: 1528 agaatatctaggcattatgttccacca--catggaacagagc--agatcagaagaagcag 1583
| ||||||||| ||| | | ||| ||||||||||||| ||||||||||||||||
Sbjct: 2254514 aacatatctaggtgcaatgctacgccatgcatggaacagagcagagatcagaagaagcag 2254573
Query: 1584 aaact 1588
|||||
Sbjct: 2254574 aaact 2254578
Score = 178 bits (90), Expect = 8e-042
Identities = 159/182 (87%)
Strand = Plus / Plus
Query: 1152 ttctactgggatggtactaatcctagcagcagtagcagtactgggagcagagggagcaac 1211
||||||||||||||| | |||||||||||||| |||||||||||||||| || ||||||
Sbjct: 2254126 ttctactgggatggttccaatcctagcagcagcggcagtactgggagcagcggaagcaac 2254185
Query: 1212 agtatgggatttgaaccacagagcacgagcacaattctggagaacagtgtcttcccatgg 1271
||||||||||| || ||||||||||| | | ||||| ||||||||||||| |||||||||
Sbjct: 2254186 agtatgggattcgagccacagagcacaacctcaattttggagaacagtgtattcccatgg 2254245
Query: 1272 acagacattggacaagaaaaagatacaagggctcacctagtagcggaacttaagtggcct 1331
||||| || |||||||| |||||||| || | |||| |||| | |||||| |||||||||
Sbjct: 2254246 acagatatcggacaagagaaagataccagagttcacttagtggaggaactcaagtggcct 2254305
Query: 1332 ga 1333
||
Sbjct: 2254306 ga 2254307
Score = 145 bits (73), Expect = 1e-031
Identities = 118/133 (88%)
Strand = Plus / Plus
Query: 390 gggcttcaaaggtgcggaaagagttgtaggctgaggtggataaactatctgaggccagac 449
||||| ||||| ||||| ||||| || ||||||||||||||||||||||||||||| |||
Sbjct: 2253268 gggctccaaagatgcggcaagagctgcaggctgaggtggataaactatctgaggcctgac 2253327
Query: 450 ctcaagagaggggcattcgcccaagacgaagaagacctcatcatcgagctgcacgctgtc 509
||||||||||| |||||| | || || ||||||||||||||||| ||||| || ||||||
Sbjct: 2253328 ctcaagagaggtgcattctctcaggaggaagaagacctcatcattgagctccatgctgtc 2253387
Query: 510 ctcgggaacaggt 522
|| ||||||||||
Sbjct: 2253388 cttgggaacaggt 2253400
Score = 93.7 bits (47), Expect = 4e-016
Identities = 208/255 (81%), Gaps = 20/255 (7%)
Strand = Plus / Plus
Query: 1745 ataggaaagtatgttctagagtctcctttcctttctcttgaaaattgatgttttccttct 1804
|||| |||||| |||||||||||||| | | |||||||||||| ||| |||||| |
Sbjct: 2254726 atagaaaagtacgttctagagtctccct-cttttctcttgaaatttgctgttttt----t 2254780
Query: 1805 gtacacgac---tgaacttttgcatatttgagtttttgttctctctggtggaaattaaat 1861
||||||||| | |||||||| ||| ||||||||| |||| ||||| | || ||||
Sbjct: 2254781 gtacacgacaactcaacttttggatacttgagttttggttcactctgttt---atcaaat 2254837
Query: 1862 aaatatagatagccataggcaaaaatgcatgtgtcggtagctctcaa----cgtgcaagt 1917
||||||||| | ||| ||||||| ||||||||||||||||||| | | |||||
Sbjct: 2254838 aaatatagacacgcatgggcaaaa---catgtgtcggtagctctcacaaaccatacaagt 2254894
Query: 1918 agccccaaacttt-caactgctgccatgcatgtccatgcaaattaattattgcatgttgt 1976
|| ||||| |||| |||||||| ||||||| || ||||||||||||||||||||||||||
Sbjct: 2254895 agtcccaagcttttcaactgctaccatgcacgtacatgcaaattaattattgcatgttgt 2254954
Query: 1977 atttttcatttcttt 1991
|||||| ||||||||
Sbjct: 2254955 attttt-atttcttt 2254968
Score = 81.8 bits (41), Expect = 1e-012
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 5 cctttccttgctttccactgaaatctcctatctgcagccatgcagttgctcaatcctggc 64
||||||| |||||||||||||||||||||||| ||| |||| |||||||||||| ||||
Sbjct: 2252738 cctttccctgctttccactgaaatctcctatccgcaaccatacagttgctcaattctggt 2252797
Query: 65 ctcag 69
|||||
Sbjct: 2252798 ctcag 2252802
Score = 44.1 bits (22), Expect = 0.29
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 402 tgcggaaagagttgtaggctgaggtggataaactatctgaggccagacct 451
||||| ||||| || |||||| ||||||| ||||| || |||||||||||
Sbjct: 26781100 tgcggcaagagctgcaggctgcggtggatcaactacctcaggccagacct 26781149
Score = 42.1 bits (21), Expect = 1.1
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 518 caggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaa 574
||||||||||| || || | ||||||||| |||||||| || || |||||||||||
Sbjct: 20955841 caggtggtctctgatcgccgggcagctgccggggaggacggacaacgagatcaagaa 20955785
>gb|AQ861558.1|AQ861558 nbeb0017G17f CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0017G17f, DNA sequence
Length = 829
Score = 446 bits (225), Expect = e-122
Identities = 465/545 (85%)
Strand = Plus / Plus
Query: 588 tgcatcaagaagaagctgaggcagaaaggcattgatcccaacacccacaagccacttact 647
||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||
Sbjct: 47 tgcatcaagaagaagctccggcagaaaggcattgatcccaacacccacaagcccctcacc 106
Query: 648 gaggctgatcacggcggtgcagctcccaccatcagcaccgagagaacctcagggtccagc 707
| |||||| | | || ||||| ||||| ||||||||||||| |||||||||||||||
Sbjct: 107 gtttctgatcgcaggggagcagcacccacagtcagcaccgagaggacctcagggtccagc 166
Query: 708 gacatcaacccatcaagcactggtcctctggggaacttgagccccctcctcagcgagacg 767
||| ||||||| ||||| ||||| |||| ||||||||||||| |||||||||||||||
Sbjct: 167 gacgtcaacccgtcaagtgctggtgctctagggaacttgagccacctcctcagcgagaca 226
Query: 768 gctcaatcatcaatgctgatgcccgtgtacgacaagaatcgtgctgaaacaccaaacttg 827
|| ||||||||||||||| |||| ||||| || ||||||| ||||||| ||| ||||
Sbjct: 227 gcacaatcatcaatgctgctgccggtgtatgataagaatcaccctgaaactgcaagcttg 286
Query: 828 gcacgccctaagctgccaccaaaggagctgttcctggagcagcttactgctggacacgag 887
||||||||||| |||||||||||||| |||| || || ||||||||||| || ||||||
Sbjct: 287 ccacgccctaaggtgccaccaaaggagttgtttcttgaccagcttactgccggtcacgag 346
Query: 888 agtccatcaacctgccactcatcaggccaaactctctatttccctttccaacagccctta 947
|| ||||||| |||| ||||||||| | ||| || ||||| |||||||| || || |||
Sbjct: 347 agcccatcaagttgccgctcatcaggtccaaccctgtattttcctttccagcaaccatta 406
Query: 948 ggctacaacagtgagagtggcagcagcgatggggcgaatatgaattcactctggttcaac 1007
||||||| | ||| |||||| | ||||| |||| ||||||||||||||||||||||
Sbjct: 407 ggctacagtaatgaatgtggcactggggatggtgcgagtatgaattcactctggttcaac 466
Query: 1008 cagagtgacttcaactgcagcacaatttctacagtgatgccgccagtttcaccatcggcc 1067
|||| ||| ||||||||||||||||| || || |||||||| |||||||||||||| |||
Sbjct: 467 cagaatgatttcaactgcagcacaatctccaccgtgatgccaccagtttcaccatcagcc 526
Query: 1068 ctctctacatcaatggggctgaatcttccacctgataatcctcgacatggaggaactggc 1127
||||| ||||||||||||||||||||||| || || |||||||| || ||||| ||||||
Sbjct: 527 ctctcaacatcaatggggctgaatcttcccccagaaaatcctcgtcacggaggcactggc 586
Query: 1128 attgg 1132
|||||
Sbjct: 587 attgg 591
Score = 170 bits (86), Expect = 2e-039
Identities = 158/182 (86%)
Strand = Plus / Plus
Query: 1152 ttctactgggatggtactaatcctagcagcagtagcagtactgggagcagagggagcaac 1211
||||||||||||||| | |||||||||||||| |||||||||||||||| || ||||||
Sbjct: 602 ttctactgggatggttccaatcctagcagcagcggcagtactgggagcagcggaagcaac 661
Query: 1212 agtatgggatttgaaccacagagcacgagcacaattctggagaacagtgtcttcccatgg 1271
||||||||||| || ||||||||||| | | ||||| ||||||||||||| |||||||||
Sbjct: 662 agtatgggattcgagccacagagcacaacctcaattttggagaacagtgtattcccatgg 721
Query: 1272 acagacattggacaagaaaaagatacaagggctcacctagtagcggaacttaagtggcct 1331
||||| || |||||||| |||||||| || | |||| |||| | |||| ||||||||||
Sbjct: 722 acagatatcggacaagagaaagataccagagttcacttagtggaggaaactaagtggcct 781
Query: 1332 ga 1333
||
Sbjct: 782 ga 783
>dbj|AK111803.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013087D08, full
insert sequence
Length = 1699
Score = 365 bits (184), Expect = 6e-098
Identities = 346/400 (86%)
Strand = Plus / Plus
Query: 258 atggggaggcattcttgctgctacaagcagaagctgagaaaggggctctggtcccctgag 317
|||||||| ||||| ||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 276 atggggagacattcctgctgctacaagcagaagctgaggaaggggctctggtcacctgag 335
Query: 318 gaggatgagaaactcatgaatcacataacaaagcatggccatggctgctggagctctgtt 377
||||||||||| |||||||| |||||||| |||||||||||||||||||||||| | |||
Sbjct: 336 gaggatgagaagctcatgaaccacataaccaagcatggccatggctgctggagcaccgtt 395
Query: 378 cccaaactcgctgggcttcaaaggtgcggaaagagttgtaggctgaggtggataaactat 437
|| ||||| || |||||||| || || || || || || |||||||| |||||||||||
Sbjct: 396 ccaaaacttgcagggcttcagagatgtggcaaaagctgcaggctgagatggataaactac 455
Query: 438 ctgaggccagacctcaagagaggggcattcgcccaagacgaagaagacctcatcatcgag 497
||||||| ||||| |||||||| |||||| | || || ||||| ||||||||| | |||
Sbjct: 456 ttgaggcctgacctaaagagaggtgcattctctcaggaggaagaggacctcatcgttgag 515
Query: 498 ctgcacgctgtcctcgggaacaggtggtctcaaattgcagcgcagctgccagggaggact 557
|| || ||||| || || ||||||||||||||||||||| | | |||||| || || |||
Sbjct: 516 ctccatgctgttctgggaaacaggtggtctcaaattgcaacacggctgcctggaagaact 575
Query: 558 gataatgagatcaagaatctatggaactcgtgcatcaagaagaagctgaggcagaaaggc 617
|| ||||||||||||||||| ||||| || |||||||||||||||||| |||||||||||
Sbjct: 576 gacaatgagatcaagaatctctggaattcatgcatcaagaagaagctgcggcagaaaggc 635
Query: 618 attgatcccaacacccacaagccacttactgaggctgatc 657
||||| || |||||||||||||| ||| | |||| |||||
Sbjct: 636 attgacccaaacacccacaagccccttgccgaggttgatc 675
Score = 71.9 bits (36), Expect = 1e-009
Identities = 117/144 (81%)
Strand = Plus / Plus
Query: 1396 tcaaggcagagagccaattcaacatagaagggatatgtgcttcttggttccagaatcagc 1455
|||| |||||||||||||||||||| || ||| | ||||| |||||| || || | ||
Sbjct: 1420 tcaaagcagagagccaattcaacatggaggggctctgtgcagcttggtctcaaaacctgc 1479
Query: 1456 agccacagcaacagctgcaggtagcaccagacatgtatgacaaggacttgcaaagaatgc 1515
|||||||||||| || | |||| | |||| |||||||||||||| |||||||| |||
Sbjct: 1480 tgccacagcaacatcttccagtagtatcagatatgtatgacaaggatttgcaaaggatgt 1539
Query: 1516 aactatcttttgagaatatctagg 1539
| |||||||||||||||||||
Sbjct: 1540 ccttgtcttttgagaatatctagg 1563
Score = 63.9 bits (32), Expect = 3e-007
Identities = 77/92 (83%)
Strand = Plus / Plus
Query: 989 gaattcactctggttcaaccagagtgacttcaactgcagcacaatttctacagtgatgcc 1048
|||||||||||||| ||||||| ||| | || ||||||||||||| || ||||||||
Sbjct: 1010 gaattcactctggtataaccagaatgagtccagtagcagcacaatttccactgtgatgcc 1069
Query: 1049 gccagtttcaccatcggccctctctacatcaa 1080
|||||||||||||| | ||||| |||||||
Sbjct: 1070 cccagtttcaccatcaactctctcgacatcaa 1101
Score = 50.1 bits (25), Expect = 0.005
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1170 aatcctagcagcagtagcagtactgggag 1198
||||||||||||||||||||||| |||||
Sbjct: 1182 aatcctagcagcagtagcagtacagggag 1210
>ref|XM_462838.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1287
Score = 365 bits (184), Expect = 6e-098
Identities = 346/400 (86%)
Strand = Plus / Plus
Query: 258 atggggaggcattcttgctgctacaagcagaagctgagaaaggggctctggtcccctgag 317
|||||||| ||||| ||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 1 atggggagacattcctgctgctacaagcagaagctgaggaaggggctctggtcacctgag 60
Query: 318 gaggatgagaaactcatgaatcacataacaaagcatggccatggctgctggagctctgtt 377
||||||||||| |||||||| |||||||| |||||||||||||||||||||||| | |||
Sbjct: 61 gaggatgagaagctcatgaaccacataaccaagcatggccatggctgctggagcaccgtt 120
Query: 378 cccaaactcgctgggcttcaaaggtgcggaaagagttgtaggctgaggtggataaactat 437
|| ||||| || |||||||| || || || || || || |||||||| |||||||||||
Sbjct: 121 ccaaaacttgcagggcttcagagatgtggcaaaagctgcaggctgagatggataaactac 180
Query: 438 ctgaggccagacctcaagagaggggcattcgcccaagacgaagaagacctcatcatcgag 497
||||||| ||||| |||||||| |||||| | || || ||||| ||||||||| | |||
Sbjct: 181 ttgaggcctgacctaaagagaggtgcattctctcaggaggaagaggacctcatcgttgag 240
Query: 498 ctgcacgctgtcctcgggaacaggtggtctcaaattgcagcgcagctgccagggaggact 557
|| || ||||| || || ||||||||||||||||||||| | | |||||| || || |||
Sbjct: 241 ctccatgctgttctgggaaacaggtggtctcaaattgcaacacggctgcctggaagaact 300
Query: 558 gataatgagatcaagaatctatggaactcgtgcatcaagaagaagctgaggcagaaaggc 617
|| ||||||||||||||||| ||||| || |||||||||||||||||| |||||||||||
Sbjct: 301 gacaatgagatcaagaatctctggaattcatgcatcaagaagaagctgcggcagaaaggc 360
Query: 618 attgatcccaacacccacaagccacttactgaggctgatc 657
||||| || |||||||||||||| ||| | |||| |||||
Sbjct: 361 attgacccaaacacccacaagccccttgccgaggttgatc 400
Score = 69.9 bits (35), Expect = 5e-009
Identities = 116/143 (81%)
Strand = Plus / Plus
Query: 1396 tcaaggcagagagccaattcaacatagaagggatatgtgcttcttggttccagaatcagc 1455
|||| |||||||||||||||||||| || ||| | ||||| |||||| || || | ||
Sbjct: 1145 tcaaagcagagagccaattcaacatggaggggctctgtgcagcttggtctcaaaacctgc 1204
Query: 1456 agccacagcaacagctgcaggtagcaccagacatgtatgacaaggacttgcaaagaatgc 1515
|||||||||||| || | |||| | |||| |||||||||||||| |||||||| |||
Sbjct: 1205 tgccacagcaacatcttccagtagtatcagatatgtatgacaaggatttgcaaaggatgt 1264
Query: 1516 aactatcttttgagaatatctag 1538
| ||||||||||||||||||
Sbjct: 1265 ccttgtcttttgagaatatctag 1287
Score = 63.9 bits (32), Expect = 3e-007
Identities = 77/92 (83%)
Strand = Plus / Plus
Query: 989 gaattcactctggttcaaccagagtgacttcaactgcagcacaatttctacagtgatgcc 1048
|||||||||||||| ||||||| ||| | || ||||||||||||| || ||||||||
Sbjct: 735 gaattcactctggtataaccagaatgagtccagtagcagcacaatttccactgtgatgcc 794
Query: 1049 gccagtttcaccatcggccctctctacatcaa 1080
|||||||||||||| | ||||| |||||||
Sbjct: 795 cccagtttcaccatcaactctctcgacatcaa 826
Score = 50.1 bits (25), Expect = 0.005
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1170 aatcctagcagcagtagcagtactgggag 1198
||||||||||||||||||||||| |||||
Sbjct: 907 aatcctagcagcagtagcagtacagggag 935
>emb|AJ495786.1|OSA495786 Oryza sativa (japonica cultivar-group) mRNA for MYB18 protein
Length = 1760
Score = 357 bits (180), Expect = 2e-095
Identities = 345/400 (86%)
Strand = Plus / Plus
Query: 258 atggggaggcattcttgctgctacaagcagaagctgagaaaggggctctggtcccctgag 317
|||||||| ||||| ||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 271 atggggagacattcctgctgctacaagcagaagctgaggaaggggctctggtcacctgag 330
Query: 318 gaggatgagaaactcatgaatcacataacaaagcatggccatggctgctggagctctgtt 377
||||||||||| |||||||| |||||||| |||||||||||||||||||||||| | |||
Sbjct: 331 gaggatgagaagctcatgaaccacataaccaagcatggccatggctgctggagcaccgtt 390
Query: 378 cccaaactcgctgggcttcaaaggtgcggaaagagttgtaggctgaggtggataaactat 437
|| ||||| || || ||||| || || || || || || |||||||| |||||||||||
Sbjct: 391 ccaaaacttgcaggacttcagagatgtggcaaaagctgcaggctgagatggataaactac 450
Query: 438 ctgaggccagacctcaagagaggggcattcgcccaagacgaagaagacctcatcatcgag 497
||||||| ||||| |||||||| |||||| | || || ||||| ||||||||| | |||
Sbjct: 451 ttgaggcctgacctaaagagaggtgcattctctcaggaggaagaggacctcatcgttgag 510
Query: 498 ctgcacgctgtcctcgggaacaggtggtctcaaattgcagcgcagctgccagggaggact 557
|| || ||||| || || ||||||||||||||||||||| | | |||||| || || |||
Sbjct: 511 ctccatgctgttctgggaaacaggtggtctcaaattgcaacacggctgcctggaagaact 570
Query: 558 gataatgagatcaagaatctatggaactcgtgcatcaagaagaagctgaggcagaaaggc 617
|| ||||||||||||||||| ||||| || |||||||||||||||||| |||||||||||
Sbjct: 571 gacaatgagatcaagaatctctggaattcatgcatcaagaagaagctgcggcagaaaggc 630
Query: 618 attgatcccaacacccacaagccacttactgaggctgatc 657
||||| || |||||||||||||| ||| | |||| |||||
Sbjct: 631 attgacccaaacacccacaagccccttgccgaggttgatc 670
Score = 69.9 bits (35), Expect = 5e-009
Identities = 113/139 (81%)
Strand = Plus / Plus
Query: 1401 gcagagagccaattcaacatagaagggatatgtgcttcttggttccagaatcagcagcca 1460
|||||||||||||||||||| || ||| | ||||| |||||| || || | || ||||
Sbjct: 1420 gcagagagccaattcaacatggaggggctctgtgcagcttggtctcaaaacctgctgcca 1479
Query: 1461 cagcaacagctgcaggtagcaccagacatgtatgacaaggacttgcaaagaatgcaacta 1520
|||||||| || | |||| | |||| |||||||||||||| |||||||| ||| |
Sbjct: 1480 cagcaacatcttccagtagtatcagatatgtatgacaaggatttgcaaaggatgtccttg 1539
Query: 1521 tcttttgagaatatctagg 1539
|||||||||||||||||||
Sbjct: 1540 tcttttgagaatatctagg 1558
Score = 56.0 bits (28), Expect = 8e-005
Identities = 76/92 (82%)
Strand = Plus / Plus
Query: 989 gaattcactctggttcaaccagagtgacttcaactgcagcacaatttctacagtgatgcc 1048
|||||||||||||| ||||||| ||| | || |||| |||||||| || ||||||||
Sbjct: 1005 gaattcactctggtataaccagaatgaatccagtagcagtacaatttccactgtgatgcc 1064
Query: 1049 gccagtttcaccatcggccctctctacatcaa 1080
|||||||||||||| | ||||| |||||||
Sbjct: 1065 cccagtttcaccatcaactctctcgacatcaa 1096
Score = 50.1 bits (25), Expect = 0.005
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1170 aatcctagcagcagtagcagtactgggag 1198
||||||||||||||||||||||| |||||
Sbjct: 1177 aatcctagcagcagtagcagtacagggag 1205
>gb|AU083547.1|AU083547 AU083547 Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA clone S10591, mRNA sequence
Length = 542
Score = 309 bits (156), Expect = 3e-081
Identities = 252/282 (89%), Gaps = 2/282 (0%)
Strand = Plus / Plus
Query: 231 agctcccaggttctgcattgcgttgagatggggaggcattcttgctgctacaagcagaag 290
|||||| |||| ||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 258 agctccgaggtcctgcattgcactgaaatggggaggcattcttgctgctacaagcagaaa 317
Query: 291 ctgagaaaggggctctggtcccctgaggaggatgagaaactcatgaatcacataacaaag 350
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 318 ttgaggaaggggctctggtcccctgaggaggatgagaagctcatgaatcacataaccaag 377
Query: 351 catggccatggctgctggagctctgttcccaaactcgctgggcttcaaaggtgcggaaag 410
|||||||||||||||||||| |||| ||| ||||| || ||||| ||||| ||||| |||
Sbjct: 378 catggccatggctgctggagttctg-tcctaaacttgcagggctccaaagatgcggcaag 436
Query: 411 agttgtaggctgaggtggataaactatctgaggccagacc-tcaagagaggggcattcgc 469
|| || ||||||||||||||||||||||||||||| |||| |||||||||| |||||| |
Sbjct: 437 agctgcaggctgaggtggataaactatctgaggcctgaccttcaagagaggtgcattctc 496
Query: 470 ccaagacgaagaagacctcatcatcgagctgcacgctgtcct 511
|| || ||||||||||||||||| ||||| || ||||||||
Sbjct: 497 tcangaggaagaagacctcatcattgagctncatgctgtcct 538
Score = 81.8 bits (41), Expect = 1e-012
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 5 cctttccttgctttccactgaaatctcctatctgcagccatgcagttgctcaatcctggc 64
||||||| |||||||||||||||||||||||| ||| |||| |||||||||||| ||||
Sbjct: 18 cctttccctgctttccactgaaatctcctatccgcaaccatacagttgctcaattctggt 77
Query: 65 ctcag 69
|||||
Sbjct: 78 ctcag 82
>gb|AQ330326.1|AQ330326 nbxb0046P02f CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0046P02f, DNA sequence
Length = 554
Score = 254 bits (128), Expect = 2e-064
Identities = 260/304 (85%)
Strand = Plus / Plus
Query: 829 cacgccctaagctgccaccaaaggagctgttcctggagcagcttactgctggacacgaga 888
||||||||||| |||||||||||||| |||| || || ||||||||||| || |||||||
Sbjct: 2 cacgccctaaggtgccaccaaaggagttgtttcttgaccagcttactgccggtcacgaga 61
Query: 889 gtccatcaacctgccactcatcaggccaaactctctatttccctttccaacagcccttag 948
| ||||||| |||| ||||||||| | ||| || ||||| |||||||| || || ||||
Sbjct: 62 gcccatcaagttgccgctcatcaggtccaaccctgtattttcctttccagcaaccattag 121
Query: 949 gctacaacagtgagagtggcagcagcgatggggcgaatatgaattcactctggttcaacc 1008
|||||| | ||| |||||| | ||||| |||| |||||||||||||||||||||||
Sbjct: 122 gctacagtaatgaatgtggcactggggatggtgcgagtatgaattcactctggttcaacc 181
Query: 1009 agagtgacttcaactgcagcacaatttctacagtgatgccgccagtttcaccatcggccc 1068
||| ||| ||||||||||||||||| || || |||||||| |||||||||||||| ||||
Sbjct: 182 agaatgatttcaactgcagcacaatctccaccgtgatgccaccagtttcaccatcagccc 241
Query: 1069 tctctacatcaatggggctgaatcttccacctgataatcctcgacatggaggaactggca 1128
|||| ||||||||||||||||||||||| || || |||||||| || ||||| |||||||
Sbjct: 242 tctcaacatcaatggggctgaatcttcccccagaaaatcctcgtcacggaggcactggca 301
Query: 1129 ttgg 1132
||||
Sbjct: 302 ttgg 305
Score = 170 bits (86), Expect = 2e-039
Identities = 158/182 (86%)
Strand = Plus / Plus
Query: 1152 ttctactgggatggtactaatcctagcagcagtagcagtactgggagcagagggagcaac 1211
||||||||||||||| | |||||||||||||| |||||||||||||||| || ||||||
Sbjct: 316 ttctactgggatggttccaatcctagcagcagcggcagtactgggagcagcggaagcaac 375
Query: 1212 agtatgggatttgaaccacagagcacgagcacaattctggagaacagtgtcttcccatgg 1271
||||||||||| || ||||||||||| | | ||||| ||||||||||||| |||||||||
Sbjct: 376 agtatgggattcgagccacagagcacaacctcaattttggagaacagtgtattcccatgg 435
Query: 1272 acagacattggacaagaaaaagatacaagggctcacctagtagcggaacttaagtggcct 1331
||||| || |||||||| | |||||| || | |||| |||| | |||||| |||||||||
Sbjct: 436 acagatatcggacaagagacagataccagagttcacttagtggaggaactcaagtggcct 495
Query: 1332 ga 1333
||
Sbjct: 496 ga 497
>gb|CF276098.1|CF276098 14ETL--01-B22.b1 Rice etiolated leaf plasmid cDNA library (14ETL)
Oryza sativa (japonica cultivar-group) cDNA clone
14ETL--01-B22, mRNA sequence
Length = 493
Score = 254 bits (128), Expect = 2e-064
Identities = 202/224 (90%), Gaps = 2/224 (0%)
Strand = Plus / Plus
Query: 231 agctcccaggttctgcattgcgttgagatggggaggcattcttgctgctacaagcagaag 290
|||||| |||| ||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 270 agctccgaggtcctgcattgcactgaaatggggaggcattcttgctgctacaagcagaaa 329
Query: 291 ctgagaaaggggctctggtcccctgaggaggatgagaaactcatgaatcacataacaaag 350
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 330 ttgaggaaggggctctggtcccctgaggaggatgagaagctcatgaatcacataaccaag 389
Query: 351 catggccatggc-tgctgg-agctctgttcccaaactcgctgggcttcaaaggtgcggaa 408
|||||||||||| |||||| || |||||||| ||||| || ||||| ||||| ||||| |
Sbjct: 390 catggccatggcntgctggaagttctgttcctaaacttgcagggctccaaagatgcggca 449
Query: 409 agagttgtaggctgaggtggataaactatctgaggccagacctc 452
|||| || ||||||||||||||||||||||||||||| ||||||
Sbjct: 450 agagctgcaggctgaggtggataaactatctgaggcctgacctc 493
Score = 81.8 bits (41), Expect = 1e-012
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 5 cctttccttgctttccactgaaatctcctatctgcagccatgcagttgctcaatcctggc 64
||||||| |||||||||||||||||||||||| ||| |||| |||||||||||| ||||
Sbjct: 30 cctttccctgctttccactgaaatctcctatccgcaaccatacagttgctcaattctggt 89
Query: 65 ctcag 69
|||||
Sbjct: 90 ctcag 94
>gb|AQ256517.1|AQ256517 nbxb0016M14f CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0016M14f, DNA sequence
Length = 691
Score = 238 bits (120), Expect = 1e-059
Identities = 213/244 (87%)
Strand = Plus / Minus
Query: 564 gagatcaagaatctatggaactcgtgcatcaagaagaagctgaggcagaaaggcattgat 623
|||||||||||||| || || || ||||||||||||||| | |||||||||||||||||
Sbjct: 256 gagatcaagaatctctgcaattcatgcatcaagaagaagatccggcagaaaggcattgat 197
Query: 624 cccaacacccacaagccacttactgaggctgatcacggcggtgcagctcccaccatcagc 683
||||||||||||||||| || || |||||||||| | | || ||||| ||||| |||||
Sbjct: 196 cccaacacccacaagcccctcaccgaggctgatcgcaggggagcagcacccacagtcagc 137
Query: 684 accgagagaacctcagggtccagcgacatcaacccatcaagcactggtcctctggggaac 743
|||||||| |||||||||||||||||| ||||||| ||||| ||||| |||| ||||||
Sbjct: 136 accgagaggacctcagggtccagcgacgtcaacccgtcaagtgctggtgctctagggaac 77
Query: 744 ttgagccccctcctcagcgagacggctcaatcatcaatgctgatgcccgtgtacgacaag 803
||||||| ||||||||||||||| || ||||||||||||||| |||| ||||| || |||
Sbjct: 76 ttgagccacctcctcagcgagacagcacaatcatcaatgctgctgccggtgtatgataag 17
Query: 804 aatc 807
||||
Sbjct: 16 aatc 13
>gb|AU083548.1|AU083548 AU083548 Rice green shoot Oryza sativa (japonica cultivar-group) cDNA
clone S10591, mRNA sequence
Length = 708
Score = 206 bits (104), Expect = 3e-050
Identities = 211/245 (86%), Gaps = 4/245 (1%)
Strand = Plus / Plus
Query: 1348 cgaccacagtcatgcagaaccagagccaaacgctttatgatgatgtgatcaaggcagaga 1407
|||| |||| ||||||||||||||||||| | | || ||||||||||||||||||||||
Sbjct: 146 cgacgacagccatgcagaaccagagccaatcattatacgatgatgtgatcaaggcagaga 205
Query: 1408 gccaattcaacatagaagggatatgtgcttcttggttccagaatcagcagccacagcaac 1467
||||||||||||| |||||||||||||| |||||||||||||||||||| ||||| ||||
Sbjct: 206 gccaattcaacatggaagggatatgtgcctcttggttccagaatcagcaaccacancaac 265
Query: 1468 agctgcaggtagcaccagacatgtatgacaaggacttgcaaagaatgcaactatcttttg 1527
||||||| | |||| ||||||||||||| || |||||||||||| ||| | |||||||
Sbjct: 266 agctgcaagcagcatcagacatgtatgataaagacttgcaaagattgcccttgtcttttg 325
Query: 1528 agaatatctaggcattatgttccacca--catggaacagagc--agatcagaagaagcag 1583
| ||||||||| ||| | | ||| ||||||||||||| ||||||||||||||||
Sbjct: 326 aacatatctaggtgcaatgctacgccatgcatggaacagagcagagatcagaagaagcag 385
Query: 1584 aaact 1588
|||||
Sbjct: 386 aaact 390
Score = 46.1 bits (23), Expect = 0.074
Identities = 133/166 (80%), Gaps = 14/166 (8%)
Strand = Plus / Plus
Query: 1745 ataggaaagtatgttctagagtctcctttcctttctcttgaaaattgatgttttccttct 1804
|||| |||||| |||||||||||||| || |||||||||||| ||| |||| || |
Sbjct: 538 atagaaaagtacgttctagagtctcc-ctcttttctcttgaaatttgctgtt----tttt 592
Query: 1805 gtacacg---actgaacttttgcatatttgagtttttgttctctctggtggaaattaaat 1861
||||||| ||| |||||||| ||| ||||||||| |||| ||||| | || ||||
Sbjct: 593 gtacacgacaactcaacttttggatacttgagttttggttcactctgtt---tatcaaat 649
Query: 1862 aaatatagatagccataggcaaaaatgcatgtgtcggtagctctca 1907
||||||||| | ||| ||||||| |||||||||||||||||||
Sbjct: 650 aaatatagacacgcatgggcaaaa---catgtgtcggtagctctca 692
>gb|D48692.1|D48692 RICS15068A Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA, mRNA sequence
Length = 409
Score = 202 bits (102), Expect = 5e-049
Identities = 137/149 (91%)
Strand = Plus / Plus
Query: 231 agctcccaggttctgcattgcgttgagatggggaggcattcttgctgctacaagcagaag 290
|||||| |||| ||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 257 agctccgaggtcctgcattgcactgaaatggggaggcattcttgctgctacaagcagaaa 316
Query: 291 ctgagaaaggggctctggtcccctgaggaggatgagaaactcatgaatcacataacaaag 350
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 317 ttgaggaaggggctctggtcccctgaggaggatgagaagctcatgaatcacataaccaag 376
Query: 351 catggccatggctgctggagctctgttcc 379
||||||||||| |||||||| ||||||||
Sbjct: 377 catggccatggntgctggagttctgttcc 405
Score = 81.8 bits (41), Expect = 1e-012
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 5 cctttccttgctttccactgaaatctcctatctgcagccatgcagttgctcaatcctggc 64
||||||| |||||||||||||||||||||||| ||| |||| |||||||||||| ||||
Sbjct: 18 cctttccctgctttccactgaaatctcctatccgcaaccatacagttgctcaattctggt 77
Query: 65 ctcag 69
|||||
Sbjct: 78 ctcag 82
>gb|CF276099.1|CF276099 14ETL--01-B22.g1 Rice etiolated leaf plasmid cDNA library (14ETL)
Oryza sativa (japonica cultivar-group) cDNA clone
14ETL--01-B22, mRNA sequence
Length = 516
Score = 198 bits (100), Expect = 8e-048
Identities = 148/164 (90%)
Strand = Plus / Minus
Query: 1348 cgaccacagtcatgcagaaccagagccaaacgctttatgatgatgtgatcaaggcagaga 1407
|||| |||| ||||||||||||||||||| | | || ||||||||||||||||||||||
Sbjct: 315 cgacgacagccatgcagaaccagagccaatcattatacgatgatgtgatcaaggcagaga 256
Query: 1408 gccaattcaacatagaagggatatgtgcttcttggttccagaatcagcagccacagcaac 1467
||||||||||||| |||||||||||||| |||||||||||||||||||| ||||| ||||
Sbjct: 255 gccaattcaacatggaagggatatgtgcctcttggttccagaatcagcaaccacaacaac 196
Query: 1468 agctgcaggtagcaccagacatgtatgacaaggacttgcaaaga 1511
||||||| | |||| ||||||||||||| || ||||||||||||
Sbjct: 195 agctgcaagcagcatcagacatgtatgataaagacttgcaaaga 152
Score = 165 bits (83), Expect = 1e-037
Identities = 152/175 (86%)
Strand = Plus / Minus
Query: 1159 gggatggtactaatcctagcagcagtagcagtactgggagcagagggagcaacagtatgg 1218
|||||||| | |||||||||||||| |||||||||||||||| || |||||||||||||
Sbjct: 516 gggatggttccaatcctagcagcagcggcagtactgggagcagcggaagcaacagtatgg 457
Query: 1219 gatttgaaccacagagcacgagcacaattctggagaacagtgtcttcccatggacagaca 1278
|||| || ||||||||||| | | ||||| ||||||||||||| |||||||||||||| |
Sbjct: 456 gattcgagccacagagcacaacctcaattttggagaacagtgtattcccatggacagata 397
Query: 1279 ttggacaagaaaaagatacaagggctcacctagtagcggaacttaagtggcctga 1333
| |||||||| |||||||| || | |||| |||| | |||||| |||||||||||
Sbjct: 396 tcggacaagagaaagataccagagttcacttagtggaggaactcaagtggcctga 342
Score = 50.1 bits (25), Expect = 0.005
Identities = 34/36 (94%), Gaps = 2/36 (5%)
Strand = Plus / Minus
Query: 1555 catggaacagagcaga--tcagaagaagcagaaact 1588
|||||||||||||||| ||||||||||||||||||
Sbjct: 106 catggaacagagcagagatcagaagaagcagaaact 71
>gb|AU183315.1|AU183315 AU183315 Rice cDNA from immature leaf including apical meristem
(under short day condition) Oryza sativa (japonica
cultivar-group) cDNA clone E61509, mRNA sequence
Length = 445
Score = 182 bits (92), Expect = 5e-043
Identities = 137/152 (90%)
Strand = Plus / Plus
Query: 981 gcgaatatgaattcactctggttcaaccagagtgacttcaactgcagcacaatttctaca 1040
|||| |||||||||||||||||||||||||| ||| ||||||||||||||||| || ||
Sbjct: 1 gcgagtatgaattcactctggttcaaccagaatgatttcaactgcagcacaatctccacc 60
Query: 1041 gtgatgccgccagtttcaccatcggccctctctacatcaatggggctgaatcttccacct 1100
|||||||| |||||||||||||| |||||||| ||||||||||||||||||||||| ||
Sbjct: 61 gtgatgccaccagtttcaccatcagccctctcaacatcaatggggctgaatcttccccca 120
Query: 1101 gataatcctcgacatggaggaactggcattgg 1132
|| |||||||| || ||||| |||||||||||
Sbjct: 121 gaaaatcctcgtcacggaggcactggcattgg 152
Score = 178 bits (90), Expect = 8e-042
Identities = 159/182 (87%)
Strand = Plus / Plus
Query: 1152 ttctactgggatggtactaatcctagcagcagtagcagtactgggagcagagggagcaac 1211
||||||||||||||| | |||||||||||||| |||||||||||||||| || ||||||
Sbjct: 163 ttctactgggatggttccaatcctagcagcagcggcagtactgggagcagcggaagcaac 222
Query: 1212 agtatgggatttgaaccacagagcacgagcacaattctggagaacagtgtcttcccatgg 1271
||||||||||| || ||||||||||| | | ||||| ||||||||||||| |||||||||
Sbjct: 223 agtatgggattcgagccacagagcacaacctcaattttggagaacagtgtattcccatgg 282
Query: 1272 acagacattggacaagaaaaagatacaagggctcacctagtagcggaacttaagtggcct 1331
||||| || |||||||| |||||||| || | |||| |||| | |||||| |||||||||
Sbjct: 283 acagatatcggacaagagaaagataccagagttcacttagtggaggaactcaagtggcct 342
Query: 1332 ga 1333
||
Sbjct: 343 ga 344
Score = 89.7 bits (45), Expect = 5e-015
Identities = 66/73 (90%)
Strand = Plus / Plus
Query: 1348 cgaccacagtcatgcagaaccagagccaaacgctttatgatgatgtgatcaaggcagaga 1407
|||| |||| ||||||||||||||||||| | | || ||||||||||||||||||||||
Sbjct: 371 cgacgacagccatgcagaaccagagccaatcattatacgatgatgtgatcaaggcagaga 430
Query: 1408 gccaattcaacat 1420
|||||||||||||
Sbjct: 431 gccaattcaacat 443
>gb|AQ050675.1|AQ050675 nbxb0004cA07f CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0004B13f, DNA sequence
Length = 809
Score = 174 bits (88), Expect = 1e-040
Identities = 118/128 (92%)
Strand = Plus / Plus
Query: 258 atggggaggcattcttgctgctacaagcagaagctgagaaaggggctctggtcccctgag 317
|||||||| ||||| ||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 174 atggggagacattcctgctgctacaagcagaagctgaggaaggggctctggtcacctgag 233
Query: 318 gaggatgagaaactcatgaatcacataacaaagcatggccatggctgctggagctctgtt 377
||||||||||| |||||||| |||||||| |||||||||||||||||||||||| | |||
Sbjct: 234 gaggatgagaagctcatgaaccacataaccaagcatggccatggctgctggagcaccgtt 293
Query: 378 cccaaact 385
|| |||||
Sbjct: 294 ccaaaact 301
Score = 69.9 bits (35), Expect = 5e-009
Identities = 88/106 (83%)
Strand = Plus / Plus
Query: 417 aggctgaggtggataaactatctgaggccagacctcaagagaggggcattcgcccaagac 476
|||||||| ||||||||||| ||||||| ||||| |||||||| |||||| | || ||
Sbjct: 447 aggctgagatggataaactacttgaggcctgacctaaagagaggtgcattctctcangag 506
Query: 477 gaagaagacctcatcatcgagctgcacgctgtcctcgggaacaggt 522
||||| ||||||||| | ||||| || ||||| || || |||||||
Sbjct: 507 gaagaggacctcatcgttgagctccatgctgttctgggaaacaggt 552
>dbj|AP003018.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:OSJNBa0004B13
Length = 142268
Score = 174 bits (88), Expect = 1e-040
Identities = 118/128 (92%)
Strand = Plus / Minus
Query: 258 atggggaggcattcttgctgctacaagcagaagctgagaaaggggctctggtcccctgag 317
|||||||| ||||| ||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 142095 atggggagacattcctgctgctacaagcagaagctgaggaaggggctctggtcacctgag 142036
Query: 318 gaggatgagaaactcatgaatcacataacaaagcatggccatggctgctggagctctgtt 377
||||||||||| |||||||| |||||||| |||||||||||||||||||||||| | |||
Sbjct: 142035 gaggatgagaagctcatgaaccacataaccaagcatggccatggctgctggagcaccgtt 141976
Query: 378 cccaaact 385
|| |||||
Sbjct: 141975 ccaaaact 141968
Score = 143 bits (72), Expect = 4e-031
Identities = 123/140 (87%)
Strand = Plus / Minus
Query: 518 caggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatct 577
||||||||||||||||||| | | |||||| || || ||||| |||||||||||||||||
Sbjct: 141620 caggtggtctcaaattgcaacacggctgcctggaagaactgacaatgagatcaagaatct 141561
Query: 578 atggaactcgtgcatcaagaagaagctgaggcagaaaggcattgatcccaacacccacaa 637
||||| || |||||||||||||||||| |||||||||||||||| || |||||||||||
Sbjct: 141560 ctggaattcatgcatcaagaagaagctgcggcagaaaggcattgacccaaacacccacaa 141501
Query: 638 gccacttactgaggctgatc 657
||| ||| | |||| |||||
Sbjct: 141500 gccccttgccgaggttgatc 141481
Score = 71.9 bits (36), Expect = 1e-009
Identities = 117/144 (81%)
Strand = Plus / Minus
Query: 1396 tcaaggcagagagccaattcaacatagaagggatatgtgcttcttggttccagaatcagc 1455
|||| |||||||||||||||||||| || ||| | ||||| |||||| || || | ||
Sbjct: 140736 tcaaagcagagagccaattcaacatggaggggctctgtgcagcttggtctcaaaacctgc 140677
Query: 1456 agccacagcaacagctgcaggtagcaccagacatgtatgacaaggacttgcaaagaatgc 1515
|||||||||||| || | |||| | |||| |||||||||||||| |||||||| |||
Sbjct: 140676 tgccacagcaacatcttccagtagtatcagatatgtatgacaaggatttgcaaaggatgt 140617
Query: 1516 aactatcttttgagaatatctagg 1539
| |||||||||||||||||||
Sbjct: 140616 ccttgtcttttgagaatatctagg 140593
Score = 67.9 bits (34), Expect = 2e-008
Identities = 88/106 (83%)
Strand = Plus / Minus
Query: 417 aggctgaggtggataaactatctgaggccagacctcaagagaggggcattcgcccaagac 476
|||||||| ||||||||||| ||||||| ||||| |||||||| |||||| | || ||
Sbjct: 141822 aggctgagatggataaactacttgaggcctgacctaaagagaggtgcattctctcaggag 141763
Query: 477 gaagaagacctcatcatcgagctgcacgctgtcctcgggaacaggt 522
||||| ||||||||| | ||||| || ||||| || || |||||||
Sbjct: 141762 gaagaggacctcatcgttgagctccatgctgttctgggaaacaggt 141717
Score = 63.9 bits (32), Expect = 3e-007
Identities = 77/92 (83%)
Strand = Plus / Minus
Query: 989 gaattcactctggttcaaccagagtgacttcaactgcagcacaatttctacagtgatgcc 1048
|||||||||||||| ||||||| ||| | || ||||||||||||| || ||||||||
Sbjct: 141146 gaattcactctggtataaccagaatgagtccagtagcagcacaatttccactgtgatgcc 141087
Query: 1049 gccagtttcaccatcggccctctctacatcaa 1080
|||||||||||||| | ||||| |||||||
Sbjct: 141086 cccagtttcaccatcaactctctcgacatcaa 141055
Score = 50.1 bits (25), Expect = 0.005
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 1170 aatcctagcagcagtagcagtactgggag 1198
||||||||||||||||||||||| |||||
Sbjct: 140974 aatcctagcagcagtagcagtacagggag 140946
>gb|AACV01000735.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg000735, whole
genome shotgun sequence
Length = 53069
Score = 174 bits (88), Expect = 1e-040
Identities = 118/128 (92%)
Strand = Plus / Minus
Query: 258 atggggaggcattcttgctgctacaagcagaagctgagaaaggggctctggtcccctgag 317
|||||||| ||||| ||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 31551 atggggagacattcctgctgctacaagcagaagctgaggaaggggctctggtcacctgag 31492
Query: 318 gaggatgagaaactcatgaatcacataacaaagcatggccatggctgctggagctctgtt 377
||||||||||| |||||||| |||||||| |||||||||||||||||||||||| | |||
Sbjct: 31491 gaggatgagaagctcatgaaccacataaccaagcatggccatggctgctggagcaccgtt 31432
Query: 378 cccaaact 385
|| |||||
Sbjct: 31431 ccaaaact 31424
Score = 143 bits (72), Expect = 4e-031
Identities = 123/140 (87%)
Strand = Plus / Minus
Query: 518 caggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatct 577
||||||||||||||||||| | | |||||| || || ||||| |||||||||||||||||
Sbjct: 31076 caggtggtctcaaattgcaacacggctgcctggaagaactgacaatgagatcaagaatct 31017
Query: 578 atggaactcgtgcatcaagaagaagctgaggcagaaaggcattgatcccaacacccacaa 637
||||| || |||||||||||||||||| |||||||||||||||| || |||||||||||
Sbjct: 31016 ctggaattcatgcatcaagaagaagctgcggcagaaaggcattgacccaaacacccacaa 30957
Query: 638 gccacttactgaggctgatc 657
||| ||| | |||| |||||
Sbjct: 30956 gccccttgccgaggttgatc 30937
Score = 71.9 bits (36), Expect = 1e-009
Identities = 117/144 (81%)
Strand = Plus / Minus
Query: 1396 tcaaggcagagagccaattcaacatagaagggatatgtgcttcttggttccagaatcagc 1455
|||| |||||||||||||||||||| || ||| | ||||| |||||| || || | ||
Sbjct: 30192 tcaaagcagagagccaattcaacatggaggggctctgtgcagcttggtctcaaaacctgc 30133
Query: 1456 agccacagcaacagctgcaggtagcaccagacatgtatgacaaggacttgcaaagaatgc 1515
|||||||||||| || | |||| | |||| |||||||||||||| |||||||| |||
Sbjct: 30132 tgccacagcaacatcttccagtagtatcagatatgtatgacaaggatttgcaaaggatgt 30073
Query: 1516 aactatcttttgagaatatctagg 1539
| |||||||||||||||||||
Sbjct: 30072 ccttgtcttttgagaatatctagg 30049
Score = 67.9 bits (34), Expect = 2e-008
Identities = 88/106 (83%)
Strand = Plus / Minus
Query: 417 aggctgaggtggataaactatctgaggccagacctcaagagaggggcattcgcccaagac 476
|||||||| ||||||||||| ||||||| ||||| |||||||| |||||| | || ||
Sbjct: 31278 aggctgagatggataaactacttgaggcctgacctaaagagaggtgcattctctcaggag 31219
Query: 477 gaagaagacctcatcatcgagctgcacgctgtcctcgggaacaggt 522
||||| ||||||||| | ||||| || ||||| || || |||||||
Sbjct: 31218 gaagaggacctcatcgttgagctccatgctgttctgggaaacaggt 31173
Score = 63.9 bits (32), Expect = 3e-007
Identities = 77/92 (83%)
Strand = Plus / Minus
Query: 989 gaattcactctggttcaaccagagtgacttcaactgcagcacaatttctacagtgatgcc 1048
|||||||||||||| ||||||| ||| | || ||||||||||||| || ||||||||
Sbjct: 30602 gaattcactctggtataaccagaatgagtccagtagcagcacaatttccactgtgatgcc 30543
Query: 1049 gccagtttcaccatcggccctctctacatcaa 1080
|||||||||||||| | ||||| |||||||
Sbjct: 30542 cccagtttcaccatcaactctctcgacatcaa 30511
Score = 50.1 bits (25), Expect = 0.005
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 1170 aatcctagcagcagtagcagtactgggag 1198
||||||||||||||||||||||| |||||
Sbjct: 30430 aatcctagcagcagtagcagtacagggag 30402
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 174 bits (88), Expect = 1e-040
Identities = 118/128 (92%)
Strand = Plus / Minus
Query: 258 atggggaggcattcttgctgctacaagcagaagctgagaaaggggctctggtcccctgag 317
|||||||| ||||| ||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 10215278 atggggagacattcctgctgctacaagcagaagctgaggaaggggctctggtcacctgag 10215219
Query: 318 gaggatgagaaactcatgaatcacataacaaagcatggccatggctgctggagctctgtt 377
||||||||||| |||||||| |||||||| |||||||||||||||||||||||| | |||
Sbjct: 10215218 gaggatgagaagctcatgaaccacataaccaagcatggccatggctgctggagcaccgtt 10215159
Query: 378 cccaaact 385
|| |||||
Sbjct: 10215158 ccaaaact 10215151
Score = 143 bits (72), Expect = 4e-031
Identities = 123/140 (87%)
Strand = Plus / Minus
Query: 518 caggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatct 577
||||||||||||||||||| | | |||||| || || ||||| |||||||||||||||||
Sbjct: 10214803 caggtggtctcaaattgcaacacggctgcctggaagaactgacaatgagatcaagaatct 10214744
Query: 578 atggaactcgtgcatcaagaagaagctgaggcagaaaggcattgatcccaacacccacaa 637
||||| || |||||||||||||||||| |||||||||||||||| || |||||||||||
Sbjct: 10214743 ctggaattcatgcatcaagaagaagctgcggcagaaaggcattgacccaaacacccacaa 10214684
Query: 638 gccacttactgaggctgatc 657
||| ||| | |||| |||||
Sbjct: 10214683 gccccttgccgaggttgatc 10214664
Score = 71.9 bits (36), Expect = 1e-009
Identities = 117/144 (81%)
Strand = Plus / Minus
Query: 1396 tcaaggcagagagccaattcaacatagaagggatatgtgcttcttggttccagaatcagc 1455
|||| |||||||||||||||||||| || ||| | ||||| |||||| || || | ||
Sbjct: 10213919 tcaaagcagagagccaattcaacatggaggggctctgtgcagcttggtctcaaaacctgc 10213860
Query: 1456 agccacagcaacagctgcaggtagcaccagacatgtatgacaaggacttgcaaagaatgc 1515
|||||||||||| || | |||| | |||| |||||||||||||| |||||||| |||
Sbjct: 10213859 tgccacagcaacatcttccagtagtatcagatatgtatgacaaggatttgcaaaggatgt 10213800
Query: 1516 aactatcttttgagaatatctagg 1539
| |||||||||||||||||||
Sbjct: 10213799 ccttgtcttttgagaatatctagg 10213776
Score = 69.9 bits (35), Expect = 5e-009
Identities = 74/87 (85%)
Strand = Plus / Minus
Query: 518 caggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatct 577
||||||||| || ||||| ||||||||||| || |||| || || ||||||||||| |
Sbjct: 20316522 caggtggtcccagattgcggcgcagctgcccggccggacggacaacgagatcaagaactt 20316463
Query: 578 atggaactcgtgcatcaagaagaagct 604
|||||||||||| |||||||||||||
Sbjct: 20316462 ctggaactcgtgcctcaagaagaagct 20316436
Score = 67.9 bits (34), Expect = 2e-008
Identities = 88/106 (83%)
Strand = Plus / Minus
Query: 417 aggctgaggtggataaactatctgaggccagacctcaagagaggggcattcgcccaagac 476
|||||||| ||||||||||| ||||||| ||||| |||||||| |||||| | || ||
Sbjct: 10215005 aggctgagatggataaactacttgaggcctgacctaaagagaggtgcattctctcaggag 10214946
Query: 477 gaagaagacctcatcatcgagctgcacgctgtcctcgggaacaggt 522
||||| ||||||||| | ||||| || ||||| || || |||||||
Sbjct: 10214945 gaagaggacctcatcgttgagctccatgctgttctgggaaacaggt 10214900
Score = 63.9 bits (32), Expect = 3e-007
Identities = 77/92 (83%)
Strand = Plus / Minus
Query: 989 gaattcactctggttcaaccagagtgacttcaactgcagcacaatttctacagtgatgcc 1048
|||||||||||||| ||||||| ||| | || ||||||||||||| || ||||||||
Sbjct: 10214329 gaattcactctggtataaccagaatgagtccagtagcagcacaatttccactgtgatgcc 10214270
Query: 1049 gccagtttcaccatcggccctctctacatcaa 1080
|||||||||||||| | ||||| |||||||
Sbjct: 10214269 cccagtttcaccatcaactctctcgacatcaa 10214238
Score = 60.0 bits (30), Expect = 5e-006
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 399 aggtgcggaaagagttgtaggctgaggtggataaactatctgaggccagacctcaagaga 458
||||| || |||||||| |||||||| ||||| ||||| |||||||| || |||||||||
Sbjct: 20317095 aggtgtggcaagagttgcaggctgagatggatcaactacctgaggcctgatctcaagaga 20317036
Query: 459 gg 460
||
Sbjct: 20317035 gg 20317034
Score = 54.0 bits (27), Expect = 3e-004
Identities = 99/123 (80%)
Strand = Plus / Minus
Query: 518 caggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatct 577
||||||||| ||||| || |||| |||| |||||||| || || ||||||||||| |
Sbjct: 29207064 caggtggtcgcaaatcgcgtcgcacttgccggggaggacggacaacgagatcaagaactt 29207005
Query: 578 atggaactcgtgcatcaagaagaagctgaggcagaaaggcattgatcccaacacccacaa 637
|||||| ||| |||||||||||||||||||| ||||| || |||| ||||||| |
Sbjct: 29207004 ctggaacagctgcctcaagaagaagctgaggcagcgcggcatcgaccccagcacccacca 29206945
Query: 638 gcc 640
|||
Sbjct: 29206944 gcc 29206942
Score = 52.0 bits (26), Expect = 0.001
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 408 aagagttgtaggctgaggtggataaactatctgaggccagacctcaagag 457
||||| || |||||||||||||| ||||| |||||||| ||||| |||||
Sbjct: 29543907 aagagctgcaggctgaggtggatcaactacctgaggcctgacctgaagag 29543956
Score = 50.1 bits (25), Expect = 0.005
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 1170 aatcctagcagcagtagcagtactgggag 1198
||||||||||||||||||||||| |||||
Sbjct: 10214157 aatcctagcagcagtagcagtacagggag 10214129
Score = 50.1 bits (25), Expect = 0.005
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 408 aagagttgtaggctgaggtggataaactatctgaggccagacctcaaga 456
||||| || |||||||||||||| ||||| |||||||| ||||| ||||
Sbjct: 3518431 aagagctgcaggctgaggtggatgaactacctgaggcctgacctgaaga 3518383
Score = 44.1 bits (22), Expect = 0.29
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 283 agcagaagctgagaaaggggctctggtcccctgaggaggatgagaa 328
||||||||||| | |||||||||||||| || ||||| || |||||
Sbjct: 29207523 agcagaagctgcgcaaggggctctggtctcccgaggaagacgagaa 29207478
Score = 40.1 bits (20), Expect = 4.5
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 539 gcagctgccagggaggactgataatgagatcaagaa 574
||||||||| |||||||| || || |||||||||||
Sbjct: 38006642 gcagctgccggggaggacggacaacgagatcaagaa 38006677
Score = 40.1 bits (20), Expect = 4.5
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 354 ggccatggctgctggagctc 373
||||||||||||||||||||
Sbjct: 29543686 ggccatggctgctggagctc 29543705
Score = 40.1 bits (20), Expect = 4.5
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1768 tcctttcctttctcttgaaa 1787
||||||||||||||||||||
Sbjct: 23812798 tcctttcctttctcttgaaa 23812779
>ref|NT_036323.3| Oryza sativa (japonica cultivar-group)
Length = 1440362
Score = 174 bits (88), Expect = 1e-040
Identities = 118/128 (92%)
Strand = Plus / Minus
Query: 258 atggggaggcattcttgctgctacaagcagaagctgagaaaggggctctggtcccctgag 317
|||||||| ||||| ||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 164965 atggggagacattcctgctgctacaagcagaagctgaggaaggggctctggtcacctgag 164906
Query: 318 gaggatgagaaactcatgaatcacataacaaagcatggccatggctgctggagctctgtt 377
||||||||||| |||||||| |||||||| |||||||||||||||||||||||| | |||
Sbjct: 164905 gaggatgagaagctcatgaaccacataaccaagcatggccatggctgctggagcaccgtt 164846
Query: 378 cccaaact 385
|| |||||
Sbjct: 164845 ccaaaact 164838
Score = 143 bits (72), Expect = 4e-031
Identities = 123/140 (87%)
Strand = Plus / Minus
Query: 518 caggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatct 577
||||||||||||||||||| | | |||||| || || ||||| |||||||||||||||||
Sbjct: 164490 caggtggtctcaaattgcaacacggctgcctggaagaactgacaatgagatcaagaatct 164431
Query: 578 atggaactcgtgcatcaagaagaagctgaggcagaaaggcattgatcccaacacccacaa 637
||||| || |||||||||||||||||| |||||||||||||||| || |||||||||||
Sbjct: 164430 ctggaattcatgcatcaagaagaagctgcggcagaaaggcattgacccaaacacccacaa 164371
Query: 638 gccacttactgaggctgatc 657
||| ||| | |||| |||||
Sbjct: 164370 gccccttgccgaggttgatc 164351
Score = 71.9 bits (36), Expect = 1e-009
Identities = 117/144 (81%)
Strand = Plus / Minus
Query: 1396 tcaaggcagagagccaattcaacatagaagggatatgtgcttcttggttccagaatcagc 1455
|||| |||||||||||||||||||| || ||| | ||||| |||||| || || | ||
Sbjct: 163606 tcaaagcagagagccaattcaacatggaggggctctgtgcagcttggtctcaaaacctgc 163547
Query: 1456 agccacagcaacagctgcaggtagcaccagacatgtatgacaaggacttgcaaagaatgc 1515
|||||||||||| || | |||| | |||| |||||||||||||| |||||||| |||
Sbjct: 163546 tgccacagcaacatcttccagtagtatcagatatgtatgacaaggatttgcaaaggatgt 163487
Query: 1516 aactatcttttgagaatatctagg 1539
| |||||||||||||||||||
Sbjct: 163486 ccttgtcttttgagaatatctagg 163463
Score = 67.9 bits (34), Expect = 2e-008
Identities = 88/106 (83%)
Strand = Plus / Minus
Query: 417 aggctgaggtggataaactatctgaggccagacctcaagagaggggcattcgcccaagac 476
|||||||| ||||||||||| ||||||| ||||| |||||||| |||||| | || ||
Sbjct: 164692 aggctgagatggataaactacttgaggcctgacctaaagagaggtgcattctctcaggag 164633
Query: 477 gaagaagacctcatcatcgagctgcacgctgtcctcgggaacaggt 522
||||| ||||||||| | ||||| || ||||| || || |||||||
Sbjct: 164632 gaagaggacctcatcgttgagctccatgctgttctgggaaacaggt 164587
Score = 63.9 bits (32), Expect = 3e-007
Identities = 77/92 (83%)
Strand = Plus / Minus
Query: 989 gaattcactctggttcaaccagagtgacttcaactgcagcacaatttctacagtgatgcc 1048
|||||||||||||| ||||||| ||| | || ||||||||||||| || ||||||||
Sbjct: 164016 gaattcactctggtataaccagaatgagtccagtagcagcacaatttccactgtgatgcc 163957
Query: 1049 gccagtttcaccatcggccctctctacatcaa 1080
|||||||||||||| | ||||| |||||||
Sbjct: 163956 cccagtttcaccatcaactctctcgacatcaa 163925
Score = 50.1 bits (25), Expect = 0.005
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 1170 aatcctagcagcagtagcagtactgggag 1198
||||||||||||||||||||||| |||||
Sbjct: 163844 aatcctagcagcagtagcagtacagggag 163816
>dbj|AP003020.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0498A12
Length = 159749
Score = 174 bits (88), Expect = 1e-040
Identities = 118/128 (92%)
Strand = Plus / Minus
Query: 258 atggggaggcattcttgctgctacaagcagaagctgagaaaggggctctggtcccctgag 317
|||||||| ||||| ||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 82810 atggggagacattcctgctgctacaagcagaagctgaggaaggggctctggtcacctgag 82751
Query: 318 gaggatgagaaactcatgaatcacataacaaagcatggccatggctgctggagctctgtt 377
||||||||||| |||||||| |||||||| |||||||||||||||||||||||| | |||
Sbjct: 82750 gaggatgagaagctcatgaaccacataaccaagcatggccatggctgctggagcaccgtt 82691
Query: 378 cccaaact 385
|| |||||
Sbjct: 82690 ccaaaact 82683
Score = 143 bits (72), Expect = 4e-031
Identities = 123/140 (87%)
Strand = Plus / Minus
Query: 518 caggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatct 577
||||||||||||||||||| | | |||||| || || ||||| |||||||||||||||||
Sbjct: 82335 caggtggtctcaaattgcaacacggctgcctggaagaactgacaatgagatcaagaatct 82276
Query: 578 atggaactcgtgcatcaagaagaagctgaggcagaaaggcattgatcccaacacccacaa 637
||||| || |||||||||||||||||| |||||||||||||||| || |||||||||||
Sbjct: 82275 ctggaattcatgcatcaagaagaagctgcggcagaaaggcattgacccaaacacccacaa 82216
Query: 638 gccacttactgaggctgatc 657
||| ||| | |||| |||||
Sbjct: 82215 gccccttgccgaggttgatc 82196
Score = 71.9 bits (36), Expect = 1e-009
Identities = 117/144 (81%)
Strand = Plus / Minus
Query: 1396 tcaaggcagagagccaattcaacatagaagggatatgtgcttcttggttccagaatcagc 1455
|||| |||||||||||||||||||| || ||| | ||||| |||||| || || | ||
Sbjct: 81451 tcaaagcagagagccaattcaacatggaggggctctgtgcagcttggtctcaaaacctgc 81392
Query: 1456 agccacagcaacagctgcaggtagcaccagacatgtatgacaaggacttgcaaagaatgc 1515
|||||||||||| || | |||| | |||| |||||||||||||| |||||||| |||
Sbjct: 81391 tgccacagcaacatcttccagtagtatcagatatgtatgacaaggatttgcaaaggatgt 81332
Query: 1516 aactatcttttgagaatatctagg 1539
| |||||||||||||||||||
Sbjct: 81331 ccttgtcttttgagaatatctagg 81308
Score = 67.9 bits (34), Expect = 2e-008
Identities = 88/106 (83%)
Strand = Plus / Minus
Query: 417 aggctgaggtggataaactatctgaggccagacctcaagagaggggcattcgcccaagac 476
|||||||| ||||||||||| ||||||| ||||| |||||||| |||||| | || ||
Sbjct: 82537 aggctgagatggataaactacttgaggcctgacctaaagagaggtgcattctctcaggag 82478
Query: 477 gaagaagacctcatcatcgagctgcacgctgtcctcgggaacaggt 522
||||| ||||||||| | ||||| || ||||| || || |||||||
Sbjct: 82477 gaagaggacctcatcgttgagctccatgctgttctgggaaacaggt 82432
Score = 63.9 bits (32), Expect = 3e-007
Identities = 77/92 (83%)
Strand = Plus / Minus
Query: 989 gaattcactctggttcaaccagagtgacttcaactgcagcacaatttctacagtgatgcc 1048
|||||||||||||| ||||||| ||| | || ||||||||||||| || ||||||||
Sbjct: 81861 gaattcactctggtataaccagaatgagtccagtagcagcacaatttccactgtgatgcc 81802
Query: 1049 gccagtttcaccatcggccctctctacatcaa 1080
|||||||||||||| | ||||| |||||||
Sbjct: 81801 cccagtttcaccatcaactctctcgacatcaa 81770
Score = 50.1 bits (25), Expect = 0.005
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 1170 aatcctagcagcagtagcagtactgggag 1198
||||||||||||||||||||||| |||||
Sbjct: 81689 aatcctagcagcagtagcagtacagggag 81661
>gb|CH401164.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000001 genomic
scaffold, whole genome shotgun sequence
Length = 11616395
Score = 174 bits (88), Expect = 1e-040
Identities = 118/128 (92%)
Strand = Plus / Minus
Query: 258 atggggaggcattcttgctgctacaagcagaagctgagaaaggggctctggtcccctgag 317
|||||||| ||||| ||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 10344675 atggggagacattcctgctgctacaagcagaagctgaggaaggggctctggtcacctgag 10344616
Query: 318 gaggatgagaaactcatgaatcacataacaaagcatggccatggctgctggagctctgtt 377
||||||||||| |||||||| |||||||| |||||||||||||||||||||||| | |||
Sbjct: 10344615 gaggatgagaagctcatgaaccacataaccaagcatggccatggctgctggagcaccgtt 10344556
Query: 378 cccaaact 385
|| |||||
Sbjct: 10344555 ccaaaact 10344548
Score = 143 bits (72), Expect = 4e-031
Identities = 123/140 (87%)
Strand = Plus / Minus
Query: 518 caggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatct 577
||||||||||||||||||| | | |||||| || || ||||| |||||||||||||||||
Sbjct: 10344200 caggtggtctcaaattgcaacacggctgcctggaagaactgacaatgagatcaagaatct 10344141
Query: 578 atggaactcgtgcatcaagaagaagctgaggcagaaaggcattgatcccaacacccacaa 637
||||| || |||||||||||||||||| |||||||||||||||| || |||||||||||
Sbjct: 10344140 ctggaattcatgcatcaagaagaagctgcggcagaaaggcattgacccaaacacccacaa 10344081
Query: 638 gccacttactgaggctgatc 657
||| ||| | |||| |||||
Sbjct: 10344080 gccccttgccgaggttgatc 10344061
Score = 71.9 bits (36), Expect = 1e-009
Identities = 117/144 (81%)
Strand = Plus / Minus
Query: 1396 tcaaggcagagagccaattcaacatagaagggatatgtgcttcttggttccagaatcagc 1455
|||| |||||||||||||||||||| || ||| | ||||| |||||| || || | ||
Sbjct: 10343316 tcaaagcagagagccaattcaacatggaggggctctgtgcagcttggtctcaaaacctgc 10343257
Query: 1456 agccacagcaacagctgcaggtagcaccagacatgtatgacaaggacttgcaaagaatgc 1515
|||||||||||| || | |||| | |||| |||||||||||||| |||||||| |||
Sbjct: 10343256 tgccacagcaacatcttccagtagtatcagatatgtatgacaaggatttgcaaaggatgt 10343197
Query: 1516 aactatcttttgagaatatctagg 1539
| |||||||||||||||||||
Sbjct: 10343196 ccttgtcttttgagaatatctagg 10343173
Score = 67.9 bits (34), Expect = 2e-008
Identities = 88/106 (83%)
Strand = Plus / Minus
Query: 417 aggctgaggtggataaactatctgaggccagacctcaagagaggggcattcgcccaagac 476
|||||||| ||||||||||| ||||||| ||||| |||||||| |||||| | || ||
Sbjct: 10344402 aggctgagatggataaactacttgaggcctgacctaaagagaggtgcattctctcaggag 10344343
Query: 477 gaagaagacctcatcatcgagctgcacgctgtcctcgggaacaggt 522
||||| ||||||||| | ||||| || ||||| || || |||||||
Sbjct: 10344342 gaagaggacctcatcgttgagctccatgctgttctgggaaacaggt 10344297
Score = 63.9 bits (32), Expect = 3e-007
Identities = 77/92 (83%)
Strand = Plus / Minus
Query: 989 gaattcactctggttcaaccagagtgacttcaactgcagcacaatttctacagtgatgcc 1048
|||||||||||||| ||||||| ||| | || ||||||||||||| || ||||||||
Sbjct: 10343726 gaattcactctggtataaccagaatgagtccagtagcagcacaatttccactgtgatgcc 10343667
Query: 1049 gccagtttcaccatcggccctctctacatcaa 1080
|||||||||||||| | ||||| |||||||
Sbjct: 10343666 cccagtttcaccatcaactctctcgacatcaa 10343635
Score = 50.1 bits (25), Expect = 0.005
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 1170 aatcctagcagcagtagcagtactgggag 1198
||||||||||||||||||||||| |||||
Sbjct: 10343554 aatcctagcagcagtagcagtacagggag 10343526
Score = 50.1 bits (25), Expect = 0.005
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 408 aagagttgtaggctgaggtggataaactatctgaggccagacctcaaga 456
||||| || |||||||||||||| ||||| |||||||| ||||| ||||
Sbjct: 3582840 aagagctgcaggctgaggtggatgaactacctgaggcctgacctgaaga 3582792
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 174 bits (88), Expect = 1e-040
Identities = 118/128 (92%)
Strand = Plus / Minus
Query: 258 atggggaggcattcttgctgctacaagcagaagctgagaaaggggctctggtcccctgag 317
|||||||| ||||| ||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 10344675 atggggagacattcctgctgctacaagcagaagctgaggaaggggctctggtcacctgag 10344616
Query: 318 gaggatgagaaactcatgaatcacataacaaagcatggccatggctgctggagctctgtt 377
||||||||||| |||||||| |||||||| |||||||||||||||||||||||| | |||
Sbjct: 10344615 gaggatgagaagctcatgaaccacataaccaagcatggccatggctgctggagcaccgtt 10344556
Query: 378 cccaaact 385
|| |||||
Sbjct: 10344555 ccaaaact 10344548
Score = 143 bits (72), Expect = 4e-031
Identities = 123/140 (87%)
Strand = Plus / Minus
Query: 518 caggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatct 577
||||||||||||||||||| | | |||||| || || ||||| |||||||||||||||||
Sbjct: 10344200 caggtggtctcaaattgcaacacggctgcctggaagaactgacaatgagatcaagaatct 10344141
Query: 578 atggaactcgtgcatcaagaagaagctgaggcagaaaggcattgatcccaacacccacaa 637
||||| || |||||||||||||||||| |||||||||||||||| || |||||||||||
Sbjct: 10344140 ctggaattcatgcatcaagaagaagctgcggcagaaaggcattgacccaaacacccacaa 10344081
Query: 638 gccacttactgaggctgatc 657
||| ||| | |||| |||||
Sbjct: 10344080 gccccttgccgaggttgatc 10344061
Score = 71.9 bits (36), Expect = 1e-009
Identities = 117/144 (81%)
Strand = Plus / Minus
Query: 1396 tcaaggcagagagccaattcaacatagaagggatatgtgcttcttggttccagaatcagc 1455
|||| |||||||||||||||||||| || ||| | ||||| |||||| || || | ||
Sbjct: 10343316 tcaaagcagagagccaattcaacatggaggggctctgtgcagcttggtctcaaaacctgc 10343257
Query: 1456 agccacagcaacagctgcaggtagcaccagacatgtatgacaaggacttgcaaagaatgc 1515
|||||||||||| || | |||| | |||| |||||||||||||| |||||||| |||
Sbjct: 10343256 tgccacagcaacatcttccagtagtatcagatatgtatgacaaggatttgcaaaggatgt 10343197
Query: 1516 aactatcttttgagaatatctagg 1539
| |||||||||||||||||||
Sbjct: 10343196 ccttgtcttttgagaatatctagg 10343173
Score = 69.9 bits (35), Expect = 5e-009
Identities = 74/87 (85%)
Strand = Plus / Minus
Query: 518 caggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatct 577
||||||||| || ||||| ||||||||||| || |||| || || ||||||||||| |
Sbjct: 19900386 caggtggtcccagattgcggcgcagctgcccggccggacggacaacgagatcaagaactt 19900327
Query: 578 atggaactcgtgcatcaagaagaagct 604
|||||||||||| |||||||||||||
Sbjct: 19900326 ctggaactcgtgcctcaagaagaagct 19900300
Score = 67.9 bits (34), Expect = 2e-008
Identities = 88/106 (83%)
Strand = Plus / Minus
Query: 417 aggctgaggtggataaactatctgaggccagacctcaagagaggggcattcgcccaagac 476
|||||||| ||||||||||| ||||||| ||||| |||||||| |||||| | || ||
Sbjct: 10344402 aggctgagatggataaactacttgaggcctgacctaaagagaggtgcattctctcaggag 10344343
Query: 477 gaagaagacctcatcatcgagctgcacgctgtcctcgggaacaggt 522
||||| ||||||||| | ||||| || ||||| || || |||||||
Sbjct: 10344342 gaagaggacctcatcgttgagctccatgctgttctgggaaacaggt 10344297
Score = 63.9 bits (32), Expect = 3e-007
Identities = 77/92 (83%)
Strand = Plus / Minus
Query: 989 gaattcactctggttcaaccagagtgacttcaactgcagcacaatttctacagtgatgcc 1048
|||||||||||||| ||||||| ||| | || ||||||||||||| || ||||||||
Sbjct: 10343726 gaattcactctggtataaccagaatgagtccagtagcagcacaatttccactgtgatgcc 10343667
Query: 1049 gccagtttcaccatcggccctctctacatcaa 1080
|||||||||||||| | ||||| |||||||
Sbjct: 10343666 cccagtttcaccatcaactctctcgacatcaa 10343635
Score = 60.0 bits (30), Expect = 5e-006
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 399 aggtgcggaaagagttgtaggctgaggtggataaactatctgaggccagacctcaagaga 458
||||| || |||||||| |||||||| ||||| ||||| |||||||| || |||||||||
Sbjct: 19900959 aggtgtggcaagagttgcaggctgagatggatcaactacctgaggcctgatctcaagaga 19900900
Query: 459 gg 460
||
Sbjct: 19900899 gg 19900898
Score = 54.0 bits (27), Expect = 3e-004
Identities = 99/123 (80%)
Strand = Plus / Minus
Query: 518 caggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatct 577
||||||||| ||||| || |||| |||| |||||||| || || ||||||||||| |
Sbjct: 28780411 caggtggtcgcaaatcgcgtcgcacttgccggggaggacggacaacgagatcaagaactt 28780352
Query: 578 atggaactcgtgcatcaagaagaagctgaggcagaaaggcattgatcccaacacccacaa 637
|||||| ||| |||||||||||||||||||| ||||| || |||| ||||||| |
Sbjct: 28780351 ctggaacagctgcctcaagaagaagctgaggcagcgcggcatcgaccccagcacccacca 28780292
Query: 638 gcc 640
|||
Sbjct: 28780291 gcc 28780289
Score = 52.0 bits (26), Expect = 0.001
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 408 aagagttgtaggctgaggtggataaactatctgaggccagacctcaagag 457
||||| || |||||||||||||| ||||| |||||||| ||||| |||||
Sbjct: 29103975 aagagctgcaggctgaggtggatcaactacctgaggcctgacctgaagag 29104024
Score = 50.1 bits (25), Expect = 0.005
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 1170 aatcctagcagcagtagcagtactgggag 1198
||||||||||||||||||||||| |||||
Sbjct: 10343554 aatcctagcagcagtagcagtacagggag 10343526
Score = 50.1 bits (25), Expect = 0.005
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 408 aagagttgtaggctgaggtggataaactatctgaggccagacctcaaga 456
||||| || |||||||||||||| ||||| |||||||| ||||| ||||
Sbjct: 3582840 aagagctgcaggctgaggtggatgaactacctgaggcctgacctgaaga 3582792
Score = 44.1 bits (22), Expect = 0.29
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 283 agcagaagctgagaaaggggctctggtcccctgaggaggatgagaa 328
||||||||||| | |||||||||||||| || ||||| || |||||
Sbjct: 28780870 agcagaagctgcgcaaggggctctggtctcccgaggaagacgagaa 28780825
Score = 40.1 bits (20), Expect = 4.5
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 539 gcagctgccagggaggactgataatgagatcaagaa 574
||||||||| |||||||| || || |||||||||||
Sbjct: 37385118 gcagctgccggggaggacggacaacgagatcaagaa 37385153
Score = 40.1 bits (20), Expect = 4.5
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 354 ggccatggctgctggagctc 373
||||||||||||||||||||
Sbjct: 29103754 ggccatggctgctggagctc 29103773
Score = 40.1 bits (20), Expect = 4.5
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1768 tcctttcctttctcttgaaa 1787
||||||||||||||||||||
Sbjct: 23285959 tcctttcctttctcttgaaa 23285940
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 174 bits (88), Expect = 1e-040
Identities = 118/128 (92%)
Strand = Plus / Minus
Query: 258 atggggaggcattcttgctgctacaagcagaagctgagaaaggggctctggtcccctgag 317
|||||||| ||||| ||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 10217496 atggggagacattcctgctgctacaagcagaagctgaggaaggggctctggtcacctgag 10217437
Query: 318 gaggatgagaaactcatgaatcacataacaaagcatggccatggctgctggagctctgtt 377
||||||||||| |||||||| |||||||| |||||||||||||||||||||||| | |||
Sbjct: 10217436 gaggatgagaagctcatgaaccacataaccaagcatggccatggctgctggagcaccgtt 10217377
Query: 378 cccaaact 385
|| |||||
Sbjct: 10217376 ccaaaact 10217369
Score = 143 bits (72), Expect = 4e-031
Identities = 123/140 (87%)
Strand = Plus / Minus
Query: 518 caggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatct 577
||||||||||||||||||| | | |||||| || || ||||| |||||||||||||||||
Sbjct: 10217021 caggtggtctcaaattgcaacacggctgcctggaagaactgacaatgagatcaagaatct 10216962
Query: 578 atggaactcgtgcatcaagaagaagctgaggcagaaaggcattgatcccaacacccacaa 637
||||| || |||||||||||||||||| |||||||||||||||| || |||||||||||
Sbjct: 10216961 ctggaattcatgcatcaagaagaagctgcggcagaaaggcattgacccaaacacccacaa 10216902
Query: 638 gccacttactgaggctgatc 657
||| ||| | |||| |||||
Sbjct: 10216901 gccccttgccgaggttgatc 10216882
Score = 71.9 bits (36), Expect = 1e-009
Identities = 117/144 (81%)
Strand = Plus / Minus
Query: 1396 tcaaggcagagagccaattcaacatagaagggatatgtgcttcttggttccagaatcagc 1455
|||| |||||||||||||||||||| || ||| | ||||| |||||| || || | ||
Sbjct: 10216137 tcaaagcagagagccaattcaacatggaggggctctgtgcagcttggtctcaaaacctgc 10216078
Query: 1456 agccacagcaacagctgcaggtagcaccagacatgtatgacaaggacttgcaaagaatgc 1515
|||||||||||| || | |||| | |||| |||||||||||||| |||||||| |||
Sbjct: 10216077 tgccacagcaacatcttccagtagtatcagatatgtatgacaaggatttgcaaaggatgt 10216018
Query: 1516 aactatcttttgagaatatctagg 1539
| |||||||||||||||||||
Sbjct: 10216017 ccttgtcttttgagaatatctagg 10215994
Score = 69.9 bits (35), Expect = 5e-009
Identities = 74/87 (85%)
Strand = Plus / Minus
Query: 518 caggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatct 577
||||||||| || ||||| ||||||||||| || |||| || || ||||||||||| |
Sbjct: 20237805 caggtggtcccagattgcggcgcagctgcccggccggacggacaacgagatcaagaactt 20237746
Query: 578 atggaactcgtgcatcaagaagaagct 604
|||||||||||| |||||||||||||
Sbjct: 20237745 ctggaactcgtgcctcaagaagaagct 20237719
Score = 67.9 bits (34), Expect = 2e-008
Identities = 88/106 (83%)
Strand = Plus / Minus
Query: 417 aggctgaggtggataaactatctgaggccagacctcaagagaggggcattcgcccaagac 476
|||||||| ||||||||||| ||||||| ||||| |||||||| |||||| | || ||
Sbjct: 10217223 aggctgagatggataaactacttgaggcctgacctaaagagaggtgcattctctcaggag 10217164
Query: 477 gaagaagacctcatcatcgagctgcacgctgtcctcgggaacaggt 522
||||| ||||||||| | ||||| || ||||| || || |||||||
Sbjct: 10217163 gaagaggacctcatcgttgagctccatgctgttctgggaaacaggt 10217118
Score = 63.9 bits (32), Expect = 3e-007
Identities = 77/92 (83%)
Strand = Plus / Minus
Query: 989 gaattcactctggttcaaccagagtgacttcaactgcagcacaatttctacagtgatgcc 1048
|||||||||||||| ||||||| ||| | || ||||||||||||| || ||||||||
Sbjct: 10216547 gaattcactctggtataaccagaatgagtccagtagcagcacaatttccactgtgatgcc 10216488
Query: 1049 gccagtttcaccatcggccctctctacatcaa 1080
|||||||||||||| | ||||| |||||||
Sbjct: 10216487 cccagtttcaccatcaactctctcgacatcaa 10216456
Score = 60.0 bits (30), Expect = 5e-006
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 399 aggtgcggaaagagttgtaggctgaggtggataaactatctgaggccagacctcaagaga 458
||||| || |||||||| |||||||| ||||| ||||| |||||||| || |||||||||
Sbjct: 20238378 aggtgtggcaagagttgcaggctgagatggatcaactacctgaggcctgatctcaagaga 20238319
Query: 459 gg 460
||
Sbjct: 20238318 gg 20238317
Score = 54.0 bits (27), Expect = 3e-004
Identities = 99/123 (80%)
Strand = Plus / Minus
Query: 518 caggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatct 577
||||||||| ||||| || |||| |||| |||||||| || || ||||||||||| |
Sbjct: 29126394 caggtggtcgcaaatcgcgtcgcacttgccggggaggacggacaacgagatcaagaactt 29126335
Query: 578 atggaactcgtgcatcaagaagaagctgaggcagaaaggcattgatcccaacacccacaa 637
|||||| ||| |||||||||||||||||||| ||||| || |||| ||||||| |
Sbjct: 29126334 ctggaacagctgcctcaagaagaagctgaggcagcgcggcatcgaccccagcacccacca 29126275
Query: 638 gcc 640
|||
Sbjct: 29126274 gcc 29126272
Score = 52.0 bits (26), Expect = 0.001
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 408 aagagttgtaggctgaggtggataaactatctgaggccagacctcaagag 457
||||| || |||||||||||||| ||||| |||||||| ||||| |||||
Sbjct: 29463237 aagagctgcaggctgaggtggatcaactacctgaggcctgacctgaagag 29463286
Score = 50.1 bits (25), Expect = 0.005
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 1170 aatcctagcagcagtagcagtactgggag 1198
||||||||||||||||||||||| |||||
Sbjct: 10216375 aatcctagcagcagtagcagtacagggag 10216347
Score = 50.1 bits (25), Expect = 0.005
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 408 aagagttgtaggctgaggtggataaactatctgaggccagacctcaaga 456
||||| || |||||||||||||| ||||| |||||||| ||||| ||||
Sbjct: 3520629 aagagctgcaggctgaggtggatgaactacctgaggcctgacctgaaga 3520581
Score = 44.1 bits (22), Expect = 0.29
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 283 agcagaagctgagaaaggggctctggtcccctgaggaggatgagaa 328
||||||||||| | |||||||||||||| || ||||| || |||||
Sbjct: 29126853 agcagaagctgcgcaaggggctctggtctcccgaggaagacgagaa 29126808
Score = 40.1 bits (20), Expect = 4.5
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 539 gcagctgccagggaggactgataatgagatcaagaa 574
||||||||| |||||||| || || |||||||||||
Sbjct: 37925972 gcagctgccggggaggacggacaacgagatcaagaa 37926007
Score = 40.1 bits (20), Expect = 4.5
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 354 ggccatggctgctggagctc 373
||||||||||||||||||||
Sbjct: 29463016 ggccatggctgctggagctc 29463035
Score = 40.1 bits (20), Expect = 4.5
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1768 tcctttcctttctcttgaaa 1787
||||||||||||||||||||
Sbjct: 23734081 tcctttcctttctcttgaaa 23734062
>ref|XM_470673.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1098
Score = 167 bits (84), Expect = 3e-038
Identities = 270/332 (81%)
Strand = Plus / Plus
Query: 273 tgctgctacaagcagaagctgagaaaggggctctggtcccctgaggaggatgagaaactc 332
|||||| ||||| |||||||||| | |||||| ||||| || |||||||| ||||| |||
Sbjct: 16 tgctgccacaagaagaagctgaggagggggctgtggtcgccggaggaggacgagaagctc 75
Query: 333 atgaatcacataacaaagcatggccatggctgctggagctctgttcccaaactcgctggg 392
||||||||||| | ||| ||||||| || ||||||||||| || ||||| || || ||
Sbjct: 76 atgaatcacatcgccaagtatggccacggttgctggagctccgtccccaagcttgcagga 135
Query: 393 cttcaaaggtgcggaaagagttgtaggctgaggtggataaactatctgaggccagacctc 452
|| | || ||||| ||||| || ||| |||||||||||||||| |||||||||||||||
Sbjct: 136 ctggagagatgcggcaagagctgcaggttgaggtggataaactacctgaggccagacctc 195
Query: 453 aagagaggggcattcgcccaagacgaagaagacctcatcatcgagctgcacgctgtcctc 512
||||| || | ||| |||| || || |||||||||||||| ||||||| | | ||
Sbjct: 196 aagaggggcaccttctcccaggaggaggaagacctcatcattcagctgcattccatgctt 255
Query: 513 gggaacaggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaag 572
|| |||| |||||| || || || ||||||||||| ||| |||| || || ||| |||||
Sbjct: 256 ggcaacaagtggtcgcagatcgcggcgcagctgccggggcggaccgacaacgaggtcaag 315
Query: 573 aatctatggaactcgtgcatcaagaagaagct 604
|| | |||||||||| |||||||||||||||
Sbjct: 316 aacttctggaactcgtacatcaagaagaagct 347
>gb|D48383.1|D48383 RICS14555A Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA, mRNA sequence
Length = 494
Score = 161 bits (81), Expect = 2e-036
Identities = 114/125 (91%)
Strand = Plus / Plus
Query: 231 agctcccaggttctgcattgcgttgagatggggaggcattcttgctgctacaagcagaag 290
|||||| |||| ||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 240 agctccgaggtcctgcattgcactgaaatggggaggcattcttgctgctacaagcagaaa 299
Query: 291 ctgagaaaggggctctggtcccctgaggaggatgagaaactcatgaatcacataacaaag 350
|||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct: 300 ttgaggaaggggctctggtcccctgaggaggatgagaaggtcatgaatcacataaccaag 359
Query: 351 catgg 355
|||||
Sbjct: 360 catgg 364
Score = 81.8 bits (41), Expect = 1e-012
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 5 cctttccttgctttccactgaaatctcctatctgcagccatgcagttgctcaatcctggc 64
||||||| |||||||||||||||||||||||| ||| |||| |||||||||||| ||||
Sbjct: 1 cctttccctgctttccactgaaatctcctatccgcaaccatacagttgctcaattctggt 60
Query: 65 ctcag 69
|||||
Sbjct: 61 ctcag 65
>gb|CB643957.1|CB643957 OSJNEb04P04.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb04P04 5', mRNA sequence
Length = 777
Score = 149 bits (75), Expect = 7e-033
Identities = 258/319 (80%)
Strand = Plus / Plus
Query: 286 agaagctgagaaaggggctctggtcccctgaggaggatgagaaactcatgaatcacataa 345
|||||||||| | ||||| ||||| || |||||||| ||||| || ||||| |||||
Sbjct: 163 agaagctgaggagagggctgtggtcgccggaggaggacgagaagctgatgaaccacattg 222
Query: 346 caaagcatggccatggctgctggagctctgttcccaaactcgctgggcttcaaaggtgcg 405
| ||| |||||||||||||||||||||| || ||||| || || || ||| | || || |
Sbjct: 223 ccaagtatggccatggctgctggagctccgtccccaagcttgcaggccttgagagatgtg 282
Query: 406 gaaagagttgtaggctgaggtggataaactatctgaggccagacctcaagagaggggcat 465
| ||||| || |||||||||||||||||||| || ||||||||||||||||| || ||||
Sbjct: 283 ggaagagctgcaggctgaggtggataaactacctcaggccagacctcaagaggggagcat 342
Query: 466 tcgcccaagacgaagaagacctcatcatcgagctgcacgctgtcctcgggaacaggtggt 525
|| | || || |||||||||||||||||| | || || | | || || |||| |||||
Sbjct: 343 tctcacaggaagaagaagacctcatcatccatctccattccatgctaggaaacaagtggt 402
Query: 526 ctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatctatggaact 585
|||| ||||| || |||||||| || |||| || || ||| ||||||| | |||||||
Sbjct: 403 ctcagattgcggctcagctgccgggtcggacggacaacgaggtcaagaacttctggaact 462
Query: 586 cgtgcatcaagaagaagct 604
| | |||||||||||||||
Sbjct: 463 cttacatcaagaagaagct 481
>ref|NM_193128.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 525
Score = 149 bits (75), Expect = 7e-033
Identities = 258/319 (80%)
Strand = Plus / Plus
Query: 286 agaagctgagaaaggggctctggtcccctgaggaggatgagaaactcatgaatcacataa 345
|||||||||| | ||||| ||||| || |||||||| ||||| || ||||| |||||
Sbjct: 29 agaagctgaggagagggctgtggtcgccggaggaggacgagaagctgatgaaccacattg 88
Query: 346 caaagcatggccatggctgctggagctctgttcccaaactcgctgggcttcaaaggtgcg 405
| ||| |||||||||||||||||||||| || ||||| || || || ||| | || || |
Sbjct: 89 ccaagtatggccatggctgctggagctccgtccccaagcttgcaggccttgagagatgtg 148
Query: 406 gaaagagttgtaggctgaggtggataaactatctgaggccagacctcaagagaggggcat 465
| ||||| || |||||||||||||||||||| || ||||||||||||||||| || ||||
Sbjct: 149 ggaagagctgcaggctgaggtggataaactacctcaggccagacctcaagaggggagcat 208
Query: 466 tcgcccaagacgaagaagacctcatcatcgagctgcacgctgtcctcgggaacaggtggt 525
|| | || || |||||||||||||||||| | || || | | || || |||| |||||
Sbjct: 209 tctcacaggaagaagaagacctcatcatccatctccattccatgctaggaaacaagtggt 268
Query: 526 ctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatctatggaact 585
|||| ||||| || |||||||| || |||| || || ||| ||||||| | |||||||
Sbjct: 269 ctcagattgcggctcagctgccgggtcggacggacaacgaggtcaagaacttctggaact 328
Query: 586 cgtgcatcaagaagaagct 604
| | |||||||||||||||
Sbjct: 329 cttacatcaagaagaagct 347
>gb|D42008.1|D42008 RICS5087A Rice shoot Oryza sativa (japonica cultivar-group) cDNA,
mRNA sequence
Length = 494
Score = 131 bits (66), Expect = 2e-027
Identities = 101/112 (90%), Gaps = 1/112 (0%)
Strand = Plus / Plus
Query: 258 atggggaggcattcttgctgctacaagcagaagctgagaaaggggctctggtcccctgag 317
|||||||| ||||| ||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 258 atggggagacattcctgctgctacaagcagaagctgaggaaggggctctggtcanctgag 317
Query: 318 gaggatga-gaaactcatgaatcacataacaaagcatggccatggctgctgg 368
|||||||| ||| |||||| | |||||||| |||||||| ||||||||||||
Sbjct: 318 gaggatgaggaagctcatggaccacataaccaagcatggncatggctgctgg 369
>gb|AU096634.1|AU096634 AU096634 Rice green shoot Oryza sativa (japonica cultivar-group) cDNA
clone S14555, mRNA sequence
Length = 708
Score = 127 bits (64), Expect = 3e-026
Identities = 114/128 (89%), Gaps = 2/128 (1%)
Strand = Plus / Plus
Query: 1386 gatgatgtgatcaaggcag-agagccaattcaacatagaagggatatgtgcttcttggtt 1444
||||||||| ||||||||| ||| ||| |||||||| |||||||||||||| ||||||||
Sbjct: 15 gatgatgtgttcaaggcaggagacccatttcaacatggaagggatatgtgcctcttggtt 74
Query: 1445 ccagaatcagc-agccacagcaacagctgcaggtagcaccagacatgtatgacaaggact 1503
||||||||||| | ||||| ||||||||||| | |||| ||||||||||||| || ||||
Sbjct: 75 ccagaatcagcaacccacaacaacagctgcaagcagcatcagacatgtatgataaagact 134
Query: 1504 tgcaaaga 1511
||||||||
Sbjct: 135 tgcaaaga 142
Score = 87.7 bits (44), Expect = 2e-014
Identities = 60/64 (93%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 1928 tttcaactgctgccatgcatgtccatgcaaattaattattgcatgttgtatttttcattt 1987
||||||||||| ||||||| || |||||||||||||||||||||||||||||||| ||||
Sbjct: 550 tttcaactgctaccatgcacgtacatgcaaattaattattgcatgttgtattttt-attt 608
Query: 1988 cttt 1991
||||
Sbjct: 609 cttt 612
Score = 50.1 bits (25), Expect = 0.005
Identities = 34/36 (94%), Gaps = 2/36 (5%)
Strand = Plus / Plus
Query: 1555 catggaacagagcaga--tcagaagaagcagaaact 1588
|||||||||||||||| ||||||||||||||||||
Sbjct: 187 catggaacagagcagagatcagaagaagcagaaact 222
>gb|D40175.1|D40175 RICS1959A Rice shoot Oryza sativa (japonica cultivar-group) cDNA,
mRNA sequence
Length = 391
Score = 115 bits (58), Expect = 1e-022
Identities = 105/117 (89%), Gaps = 3/117 (2%)
Strand = Plus / Plus
Query: 258 atggggaggcattcttgctgctacaagcag-aagctgagaaaggggctctggtcccctga 316
|||||||| ||||| ||||||||||||||| |||||||| |||||||||||||| |||||
Sbjct: 261 atggggagacattcctgctgctacaagcaggaagctgaggaaggggctctggtcacctga 320
Query: 317 gga-ggatgagaaactcatgaatcacataacaaagca-tggccatggctgctggagc 371
||| ||||||||| |||||||| |||||||| ||||| ||||||| ||| |||||||
Sbjct: 321 ggagggatgagaagctcatgaaccacataaccaagcattggccatngcttctggagc 377
>gb|C73089.1|C73089 C73089 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E2888_1A, mRNA sequence
Length = 392
Score = 115 bits (58), Expect = 1e-022
Identities = 102/113 (90%), Gaps = 3/113 (2%)
Strand = Plus / Plus
Query: 258 atggggaggcattcttgctgctacaagcagaagctgagaaaggggctctggtcccctgag 317
|||||||| ||||| ||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 265 atggggagacattcctgctgctacaagcagaagctgaggaaggggctctggtcacctgan 324
Query: 318 gaggatgagaaactcatgaatcacataacaaagcatggccatggctgctggag 370
||||||||||| |||||| | ||||| || |||||||| ||||||||||||||
Sbjct: 325 gaggatgagaagctcatg-accacat-accaagcatgg-catggctgctggag 374
>gb|AQ287492.1|AQ287492 nbxb0030K04r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0030K04r, DNA sequence
Length = 690
Score = 93.7 bits (47), Expect = 4e-016
Identities = 77/87 (88%)
Strand = Plus / Plus
Query: 408 aagagttgtaggctgaggtggataaactatctgaggccagacctcaagagaggggcattc 467
||||| || |||||||||||||||||||| || ||||||||||||||||| || ||||||
Sbjct: 330 aagagctgcaggctgaggtggataaactacctcaggccagacctcaagaggggagcattc 389
Query: 468 gcccaagacgaagaagacctcatcatc 494
| || || ||||||||||||||||||
Sbjct: 390 tcacaggaagaagaagacctcatcatc 416
Score = 40.1 bits (20), Expect = 4.5
Identities = 68/84 (80%)
Strand = Plus / Plus
Query: 521 gtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatctatg 580
||||||||| ||||| || || ||||| || |||| || || ||| ||||||| | ||
Sbjct: 590 gtggtctcagattgccgctcaactgcccggtcggacggacaacgaggtcaagaacttctg 649
Query: 581 gaactcgtgcatcaagaagaagct 604
|||||| | |||||||||||||||
Sbjct: 650 gaactcttacatcaagaagaagct 673
>gb|AQ329740.1|AQ329740 nbxb0045L21r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0045L21r, DNA sequence
Length = 890
Score = 93.7 bits (47), Expect = 4e-016
Identities = 77/87 (88%)
Strand = Plus / Plus
Query: 408 aagagttgtaggctgaggtggataaactatctgaggccagacctcaagagaggggcattc 467
||||| || |||||||||||||||||||| || ||||||||||||||||| || ||||||
Sbjct: 294 aagagctgcaggctgaggtggataaactacctcaggccagacctcaagaggggagcattc 353
Query: 468 gcccaagacgaagaagacctcatcatc 494
| || || ||||||||||||||||||
Sbjct: 354 tcacaggaagaagaagacctcatcatc 380
>gb|AQ051267.1|AQ051267 nbxb0001cF08f CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0001L15f, DNA sequence
Length = 658
Score = 93.7 bits (47), Expect = 4e-016
Identities = 77/87 (88%)
Strand = Plus / Plus
Query: 408 aagagttgtaggctgaggtggataaactatctgaggccagacctcaagagaggggcattc 467
||||| || |||||||||||||||||||| || ||||||||||||||||| || ||||||
Sbjct: 296 aagagctgcaggctgaggtggataaactacctcaggccagacctcaagaggggagcattc 355
Query: 468 gcccaagacgaagaagacctcatcatc 494
| || || ||||||||||||||||||
Sbjct: 356 tcacaggaagaagaagacctcatcatc 382
Score = 40.1 bits (20), Expect = 4.5
Identities = 68/84 (80%)
Strand = Plus / Plus
Query: 521 gtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatctatg 580
||||||||| ||||| || || ||||| || |||| || || ||| ||||||| | ||
Sbjct: 556 gtggtctcagattgcggctcacctgccgggtcggacggacaacgaggtcaagaacttctg 615
Query: 581 gaactcgtgcatcaagaagaagct 604
|||||| | |||||||||||||||
Sbjct: 616 gaactcttacatcaagaagaagct 639
>gb|AU163067.1|AU163067 AU163067 Rice green shoot Oryza sativa (japonica cultivar-group) cDNA
clone S15068, mRNA sequence
Length = 466
Score = 93.7 bits (47), Expect = 4e-016
Identities = 208/255 (81%), Gaps = 20/255 (7%)
Strand = Plus / Plus
Query: 1745 ataggaaagtatgttctagagtctcctttcctttctcttgaaaattgatgttttccttct 1804
|||| |||||| |||||||||||||| | | |||||||||||| ||| |||||| |
Sbjct: 136 atagaaaagtacgttctagagtctccct-cttttctcttgaaatttgctgttttt----t 190
Query: 1805 gtacacgac---tgaacttttgcatatttgagtttttgttctctctggtggaaattaaat 1861
||||||||| | |||||||| ||| ||||||||| |||| ||||| | || ||||
Sbjct: 191 gtacacgacaactcaacttttggatacttgagttttggttcactctgttt---atcaaat 247
Query: 1862 aaatatagatagccataggcaaaaatgcatgtgtcggtagctctcaa----cgtgcaagt 1917
||||||||| | ||| ||||||| ||||||||||||||||||| | | |||||
Sbjct: 248 aaatatagacacgcatgggcaaaa---catgtgtcggtagctctcacaaaccatacaagt 304
Query: 1918 agccccaaacttt-caactgctgccatgcatgtccatgcaaattaattattgcatgttgt 1976
|| ||||| |||| |||||||| ||||||| || ||||||||||||||||||||||||||
Sbjct: 305 agtcccaagcttttcaactgctaccatgcacgtacatgcaaattaattattgcatgttgt 364
Query: 1977 atttttcatttcttt 1991
|||||| ||||||||
Sbjct: 365 attttt-atttcttt 378
>gb|AACV01016862.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg016862, whole
genome shotgun sequence
Length = 35008
Score = 93.7 bits (47), Expect = 4e-016
Identities = 77/87 (88%)
Strand = Plus / Minus
Query: 408 aagagttgtaggctgaggtggataaactatctgaggccagacctcaagagaggggcattc 467
||||| || |||||||||||||||||||| || ||||||||||||||||| || ||||||
Sbjct: 34365 aagagctgcaggctgaggtggataaactacctcaggccagacctcaagaggggagcattc 34306
Query: 468 gcccaagacgaagaagacctcatcatc 494
| || || ||||||||||||||||||
Sbjct: 34305 tcacaggaagaagaagacctcatcatc 34279
Score = 65.9 bits (33), Expect = 8e-008
Identities = 81/97 (83%)
Strand = Plus / Minus
Query: 286 agaagctgagaaaggggctctggtcccctgaggaggatgagaaactcatgaatcacataa 345
|||||||||| | ||||| ||||| || |||||||| ||||| || ||||| |||||
Sbjct: 34762 agaagctgaggagagggctgtggtcgccggaggaggacgagaagctgatgaaccacattg 34703
Query: 346 caaagcatggccatggctgctggagctctgttcccaa 382
| ||| |||||||||||||||||||||| || |||||
Sbjct: 34702 ccaagtatggccatggctgctggagctccgtccccaa 34666
Score = 54.0 bits (27), Expect = 3e-004
Identities = 72/87 (82%)
Strand = Plus / Minus
Query: 518 caggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatct 577
|||||||||||| ||||| || |||||||| || |||| || || ||| ||||||| |
Sbjct: 34108 caggtggtctcagattgcggctcagctgccgggtcggacggacaacgaggtcaagaactt 34049
Query: 578 atggaactcgtgcatcaagaagaagct 604
|||||||| | |||||||||||||||
Sbjct: 34048 ctggaactcttacatcaagaagaagct 34022
>dbj|AP004334.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
clone:P0455H11
Length = 101607
Score = 93.7 bits (47), Expect = 4e-016
Identities = 77/87 (88%)
Strand = Plus / Plus
Query: 408 aagagttgtaggctgaggtggataaactatctgaggccagacctcaagagaggggcattc 467
||||| || |||||||||||||||||||| || ||||||||||||||||| || ||||||
Sbjct: 77496 aagagctgcaggctgaggtggataaactacctcaggccagacctcaagaggggagcattc 77555
Query: 468 gcccaagacgaagaagacctcatcatc 494
| || || ||||||||||||||||||
Sbjct: 77556 tcacaggaagaagaagacctcatcatc 77582
Score = 65.9 bits (33), Expect = 8e-008
Identities = 81/97 (83%)
Strand = Plus / Plus
Query: 286 agaagctgagaaaggggctctggtcccctgaggaggatgagaaactcatgaatcacataa 345
|||||||||| | ||||| ||||| || |||||||| ||||| || ||||| |||||
Sbjct: 77099 agaagctgaggagagggctgtggtcgccggaggaggacgagaagctgatgaaccacattg 77158
Query: 346 caaagcatggccatggctgctggagctctgttcccaa 382
| ||| |||||||||||||||||||||| || |||||
Sbjct: 77159 ccaagtatggccatggctgctggagctccgtccccaa 77195
Score = 54.0 bits (27), Expect = 3e-004
Identities = 72/87 (82%)
Strand = Plus / Plus
Query: 518 caggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatct 577
|||||||||||| ||||| || |||||||| || |||| || || ||| ||||||| |
Sbjct: 77753 caggtggtctcagattgcggctcagctgccgggtcggacggacaacgaggtcaagaactt 77812
Query: 578 atggaactcgtgcatcaagaagaagct 604
|||||||| | |||||||||||||||
Sbjct: 77813 ctggaactcttacatcaagaagaagct 77839
>dbj|AP003752.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OJ1332_C12
Length = 67349
Score = 93.7 bits (47), Expect = 4e-016
Identities = 77/87 (88%)
Strand = Plus / Plus
Query: 408 aagagttgtaggctgaggtggataaactatctgaggccagacctcaagagaggggcattc 467
||||| || |||||||||||||||||||| || ||||||||||||||||| || ||||||
Sbjct: 22446 aagagctgcaggctgaggtggataaactacctcaggccagacctcaagaggggagcattc 22505
Query: 468 gcccaagacgaagaagacctcatcatc 494
| || || ||||||||||||||||||
Sbjct: 22506 tcacaggaagaagaagacctcatcatc 22532
Score = 65.9 bits (33), Expect = 8e-008
Identities = 81/97 (83%)
Strand = Plus / Plus
Query: 286 agaagctgagaaaggggctctggtcccctgaggaggatgagaaactcatgaatcacataa 345
|||||||||| | ||||| ||||| || |||||||| ||||| || ||||| |||||
Sbjct: 22049 agaagctgaggagagggctgtggtcgccggaggaggacgagaagctgatgaaccacattg 22108
Query: 346 caaagcatggccatggctgctggagctctgttcccaa 382
| ||| |||||||||||||||||||||| || |||||
Sbjct: 22109 ccaagtatggccatggctgctggagctccgtccccaa 22145
Score = 54.0 bits (27), Expect = 3e-004
Identities = 72/87 (82%)
Strand = Plus / Plus
Query: 518 caggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatct 577
|||||||||||| ||||| || |||||||| || |||| || || ||| ||||||| |
Sbjct: 22703 caggtggtctcagattgcggctcagctgccgggtcggacggacaacgaggtcaagaactt 22762
Query: 578 atggaactcgtgcatcaagaagaagct 604
|||||||| | |||||||||||||||
Sbjct: 22763 ctggaactcttacatcaagaagaagct 22789
>ref|NT_079899.2| Oryza sativa (japonica cultivar-group)
Length = 17249721
Score = 93.7 bits (47), Expect = 4e-016
Identities = 77/87 (88%)
Strand = Plus / Plus
Query: 408 aagagttgtaggctgaggtggataaactatctgaggccagacctcaagagaggggcattc 467
||||| || |||||||||||||||||||| || ||||||||||||||||| || ||||||
Sbjct: 13915873 aagagctgcaggctgaggtggataaactacctcaggccagacctcaagaggggagcattc 13915932
Query: 468 gcccaagacgaagaagacctcatcatc 494
| || || ||||||||||||||||||
Sbjct: 13915933 tcacaggaagaagaagacctcatcatc 13915959
Score = 65.9 bits (33), Expect = 8e-008
Identities = 81/97 (83%)
Strand = Plus / Plus
Query: 286 agaagctgagaaaggggctctggtcccctgaggaggatgagaaactcatgaatcacataa 345
|||||||||| | ||||| ||||| || |||||||| ||||| || ||||| |||||
Sbjct: 13915476 agaagctgaggagagggctgtggtcgccggaggaggacgagaagctgatgaaccacattg 13915535
Query: 346 caaagcatggccatggctgctggagctctgttcccaa 382
| ||| |||||||||||||||||||||| || |||||
Sbjct: 13915536 ccaagtatggccatggctgctggagctccgtccccaa 13915572
Score = 54.0 bits (27), Expect = 3e-004
Identities = 72/87 (82%)
Strand = Plus / Plus
Query: 518 caggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatct 577
|||||||||||| ||||| || |||||||| || |||| || || ||| ||||||| |
Sbjct: 13916130 caggtggtctcagattgcggctcagctgccgggtcggacggacaacgaggtcaagaactt 13916189
Query: 578 atggaactcgtgcatcaagaagaagct 604
|||||||| | |||||||||||||||
Sbjct: 13916190 ctggaactcttacatcaagaagaagct 13916216
Score = 54.0 bits (27), Expect = 3e-004
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 570 aagaatctatggaactcgtgcatcaagaagaagct 604
|||||| | ||||||||||||||||||||||||||
Sbjct: 6229144 aagaatttctggaactcgtgcatcaagaagaagct 6229110
>gb|CH401226.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000063 genomic
scaffold, whole genome shotgun sequence
Length = 15204090
Score = 93.7 bits (47), Expect = 4e-016
Identities = 77/87 (88%)
Strand = Plus / Plus
Query: 408 aagagttgtaggctgaggtggataaactatctgaggccagacctcaagagaggggcattc 467
||||| || |||||||||||||||||||| || ||||||||||||||||| || ||||||
Sbjct: 11768662 aagagctgcaggctgaggtggataaactacctcaggccagacctcaagaggggagcattc 11768721
Query: 468 gcccaagacgaagaagacctcatcatc 494
| || || ||||||||||||||||||
Sbjct: 11768722 tcacaggaagaagaagacctcatcatc 11768748
Score = 65.9 bits (33), Expect = 8e-008
Identities = 81/97 (83%)
Strand = Plus / Plus
Query: 286 agaagctgagaaaggggctctggtcccctgaggaggatgagaaactcatgaatcacataa 345
|||||||||| | ||||| ||||| || |||||||| ||||| || ||||| |||||
Sbjct: 11768265 agaagctgaggagagggctgtggtcgccggaggaggacgagaagctgatgaaccacattg 11768324
Query: 346 caaagcatggccatggctgctggagctctgttcccaa 382
| ||| |||||||||||||||||||||| || |||||
Sbjct: 11768325 ccaagtatggccatggctgctggagctccgtccccaa 11768361
Score = 54.0 bits (27), Expect = 3e-004
Identities = 72/87 (82%)
Strand = Plus / Plus
Query: 518 caggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatct 577
|||||||||||| ||||| || |||||||| || |||| || || ||| ||||||| |
Sbjct: 11768919 caggtggtctcagattgcggctcagctgccgggtcggacggacaacgaggtcaagaactt 11768978
Query: 578 atggaactcgtgcatcaagaagaagct 604
|||||||| | |||||||||||||||
Sbjct: 11768979 ctggaactcttacatcaagaagaagct 11769005
Score = 54.0 bits (27), Expect = 3e-004
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 570 aagaatctatggaactcgtgcatcaagaagaagct 604
|||||| | ||||||||||||||||||||||||||
Sbjct: 4216263 aagaatttctggaactcgtgcatcaagaagaagct 4216229
>gb|CM000144.1| Oryza sativa (japonica cultivar-group) chromosome 7, whole genome shotgun
sequence
Length = 28626509
Score = 93.7 bits (47), Expect = 4e-016
Identities = 77/87 (88%)
Strand = Plus / Plus
Query: 408 aagagttgtaggctgaggtggataaactatctgaggccagacctcaagagaggggcattc 467
||||| || |||||||||||||||||||| || ||||||||||||||||| || ||||||
Sbjct: 25168101 aagagctgcaggctgaggtggataaactacctcaggccagacctcaagaggggagcattc 25168160
Query: 468 gcccaagacgaagaagacctcatcatc 494
| || || ||||||||||||||||||
Sbjct: 25168161 tcacaggaagaagaagacctcatcatc 25168187
Score = 65.9 bits (33), Expect = 8e-008
Identities = 81/97 (83%)
Strand = Plus / Plus
Query: 286 agaagctgagaaaggggctctggtcccctgaggaggatgagaaactcatgaatcacataa 345
|||||||||| | ||||| ||||| || |||||||| ||||| || ||||| |||||
Sbjct: 25167704 agaagctgaggagagggctgtggtcgccggaggaggacgagaagctgatgaaccacattg 25167763
Query: 346 caaagcatggccatggctgctggagctctgttcccaa 382
| ||| |||||||||||||||||||||| || |||||
Sbjct: 25167764 ccaagtatggccatggctgctggagctccgtccccaa 25167800
Score = 54.0 bits (27), Expect = 3e-004
Identities = 72/87 (82%)
Strand = Plus / Plus
Query: 518 caggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatct 577
|||||||||||| ||||| || |||||||| || |||| || || ||| ||||||| |
Sbjct: 25168358 caggtggtctcagattgcggctcagctgccgggtcggacggacaacgaggtcaagaactt 25168417
Query: 578 atggaactcgtgcatcaagaagaagct 604
|||||||| | |||||||||||||||
Sbjct: 25168418 ctggaactcttacatcaagaagaagct 25168444
Score = 54.0 bits (27), Expect = 3e-004
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 570 aagaatctatggaactcgtgcatcaagaagaagct 604
|||||| | ||||||||||||||||||||||||||
Sbjct: 17615702 aagaatttctggaactcgtgcatcaagaagaagct 17615668
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
sequence
Length = 29644043
Score = 93.7 bits (47), Expect = 4e-016
Identities = 77/87 (88%)
Strand = Plus / Plus
Query: 408 aagagttgtaggctgaggtggataaactatctgaggccagacctcaagagaggggcattc 467
||||| || |||||||||||||||||||| || ||||||||||||||||| || ||||||
Sbjct: 26302868 aagagctgcaggctgaggtggataaactacctcaggccagacctcaagaggggagcattc 26302927
Query: 468 gcccaagacgaagaagacctcatcatc 494
| || || ||||||||||||||||||
Sbjct: 26302928 tcacaggaagaagaagacctcatcatc 26302954
Score = 65.9 bits (33), Expect = 8e-008
Identities = 81/97 (83%)
Strand = Plus / Plus
Query: 286 agaagctgagaaaggggctctggtcccctgaggaggatgagaaactcatgaatcacataa 345
|||||||||| | ||||| ||||| || |||||||| ||||| || ||||| |||||
Sbjct: 26302471 agaagctgaggagagggctgtggtcgccggaggaggacgagaagctgatgaaccacattg 26302530
Query: 346 caaagcatggccatggctgctggagctctgttcccaa 382
| ||| |||||||||||||||||||||| || |||||
Sbjct: 26302531 ccaagtatggccatggctgctggagctccgtccccaa 26302567
Score = 54.0 bits (27), Expect = 3e-004
Identities = 72/87 (82%)
Strand = Plus / Plus
Query: 518 caggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatct 577
|||||||||||| ||||| || |||||||| || |||| || || ||| ||||||| |
Sbjct: 26303125 caggtggtctcagattgcggctcagctgccgggtcggacggacaacgaggtcaagaactt 26303184
Query: 578 atggaactcgtgcatcaagaagaagct 604
|||||||| | |||||||||||||||
Sbjct: 26303185 ctggaactcttacatcaagaagaagct 26303211
Score = 54.0 bits (27), Expect = 3e-004
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 570 aagaatctatggaactcgtgcatcaagaagaagct 604
|||||| | ||||||||||||||||||||||||||
Sbjct: 18606069 aagaatttctggaactcgtgcatcaagaagaagct 18606035
>gb|AC087220.9| Oryza sativa chromosome 3 BAC OSJNBb0097F01 genomic sequence, complete
sequence
Length = 135594
Score = 83.8 bits (42), Expect = 3e-013
Identities = 93/110 (84%)
Strand = Plus / Plus
Query: 273 tgctgctacaagcagaagctgagaaaggggctctggtcccctgaggaggatgagaaactc 332
|||||| ||||| |||||||||| | |||||| ||||| || |||||||| ||||| |||
Sbjct: 103640 tgctgccacaagaagaagctgaggagggggctgtggtcgccggaggaggacgagaagctc 103699
Query: 333 atgaatcacataacaaagcatggccatggctgctggagctctgttcccaa 382
||||||||||| | ||| ||||||| || ||||||||||| || |||||
Sbjct: 103700 atgaatcacatcgccaagtatggccacggttgctggagctccgtccccaa 103749
Score = 81.8 bits (41), Expect = 1e-012
Identities = 86/101 (85%)
Strand = Plus / Plus
Query: 402 tgcggaaagagttgtaggctgaggtggataaactatctgaggccagacctcaagagaggg 461
||||| ||||| || ||| |||||||||||||||| |||||||||||||||||||| ||
Sbjct: 103977 tgcggcaagagctgcaggttgaggtggataaactacctgaggccagacctcaagaggggc 104036
Query: 462 gcattcgcccaagacgaagaagacctcatcatcgagctgca 502
| ||| |||| || || |||||||||||||| |||||||
Sbjct: 104037 accttctcccaggaggaggaagacctcatcattcagctgca 104077
Score = 61.9 bits (31), Expect = 1e-006
Identities = 73/87 (83%)
Strand = Plus / Plus
Query: 518 caggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatct 577
||||||||| || || || ||||||||||| ||| |||| || || ||| ||||||| |
Sbjct: 104192 caggtggtcgcagatcgcggcgcagctgccggggcggaccgacaacgaggtcaagaactt 104251
Query: 578 atggaactcgtgcatcaagaagaagct 604
|||||||||| |||||||||||||||
Sbjct: 104252 ctggaactcgtacatcaagaagaagct 104278
>gb|AACV01006722.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006722, whole
genome shotgun sequence
Length = 31684
Score = 83.8 bits (42), Expect = 3e-013
Identities = 93/110 (84%)
Strand = Plus / Plus
Query: 273 tgctgctacaagcagaagctgagaaaggggctctggtcccctgaggaggatgagaaactc 332
|||||| ||||| |||||||||| | |||||| ||||| || |||||||| ||||| |||
Sbjct: 31187 tgctgccacaagaagaagctgaggagggggctgtggtcgccggaggaggacgagaagctc 31246
Query: 333 atgaatcacataacaaagcatggccatggctgctggagctctgttcccaa 382
||||||||||| | ||| ||||||| || ||||||||||| || |||||
Sbjct: 31247 atgaatcacatcgccaagtatggccacggttgctggagctccgtccccaa 31296
Score = 81.8 bits (41), Expect = 1e-012
Identities = 86/101 (85%)
Strand = Plus / Plus
Query: 402 tgcggaaagagttgtaggctgaggtggataaactatctgaggccagacctcaagagaggg 461
||||| ||||| || ||| |||||||||||||||| |||||||||||||||||||| ||
Sbjct: 31524 tgcggcaagagctgcaggttgaggtggataaactacctgaggccagacctcaagaggggc 31583
Query: 462 gcattcgcccaagacgaagaagacctcatcatcgagctgca 502
| ||| |||| || || |||||||||||||| |||||||
Sbjct: 31584 accttctcccaggaggaggaagacctcatcattcagctgca 31624
>ref|NT_079854.2| Oryza sativa (japonica cultivar-group)
Length = 2592259
Score = 83.8 bits (42), Expect = 3e-013
Identities = 93/110 (84%)
Strand = Plus / Minus
Query: 273 tgctgctacaagcagaagctgagaaaggggctctggtcccctgaggaggatgagaaactc 332
|||||| ||||| |||||||||| | |||||| ||||| || |||||||| ||||| |||
Sbjct: 828413 tgctgccacaagaagaagctgaggagggggctgtggtcgccggaggaggacgagaagctc 828354
Query: 333 atgaatcacataacaaagcatggccatggctgctggagctctgttcccaa 382
||||||||||| | ||| ||||||| || ||||||||||| || |||||
Sbjct: 828353 atgaatcacatcgccaagtatggccacggttgctggagctccgtccccaa 828304
Score = 81.8 bits (41), Expect = 1e-012
Identities = 86/101 (85%)
Strand = Plus / Minus
Query: 402 tgcggaaagagttgtaggctgaggtggataaactatctgaggccagacctcaagagaggg 461
||||| ||||| || ||| |||||||||||||||| |||||||||||||||||||| ||
Sbjct: 828076 tgcggcaagagctgcaggttgaggtggataaactacctgaggccagacctcaagaggggc 828017
Query: 462 gcattcgcccaagacgaagaagacctcatcatcgagctgca 502
| ||| |||| || || |||||||||||||| |||||||
Sbjct: 828016 accttctcccaggaggaggaagacctcatcattcagctgca 827976
Score = 61.9 bits (31), Expect = 1e-006
Identities = 73/87 (83%)
Strand = Plus / Minus
Query: 518 caggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatct 577
||||||||| || || || ||||||||||| ||| |||| || || ||| ||||||| |
Sbjct: 827861 caggtggtcgcagatcgcggcgcagctgccggggcggaccgacaacgaggtcaagaactt 827802
Query: 578 atggaactcgtgcatcaagaagaagct 604
|||||||||| |||||||||||||||
Sbjct: 827801 ctggaactcgtacatcaagaagaagct 827775
>gb|CH401174.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000011 genomic
scaffold, whole genome shotgun sequence
Length = 12704415
Score = 83.8 bits (42), Expect = 3e-013
Identities = 93/110 (84%)
Strand = Plus / Minus
Query: 273 tgctgctacaagcagaagctgagaaaggggctctggtcccctgaggaggatgagaaactc 332
|||||| ||||| |||||||||| | |||||| ||||| || |||||||| ||||| |||
Sbjct: 1046038 tgctgccacaagaagaagctgaggagggggctgtggtcgccggaggaggacgagaagctc 1045979
Query: 333 atgaatcacataacaaagcatggccatggctgctggagctctgttcccaa 382
||||||||||| | ||| ||||||| || ||||||||||| || |||||
Sbjct: 1045978 atgaatcacatcgccaagtatggccacggttgctggagctccgtccccaa 1045929
Score = 81.8 bits (41), Expect = 1e-012
Identities = 86/101 (85%)
Strand = Plus / Minus
Query: 402 tgcggaaagagttgtaggctgaggtggataaactatctgaggccagacctcaagagaggg 461
||||| ||||| || ||| |||||||||||||||| |||||||||||||||||||| ||
Sbjct: 1045701 tgcggcaagagctgcaggttgaggtggataaactacctgaggccagacctcaagaggggc 1045642
Query: 462 gcattcgcccaagacgaagaagacctcatcatcgagctgca 502
| ||| |||| || || |||||||||||||| |||||||
Sbjct: 1045641 accttctcccaggaggaggaagacctcatcattcagctgca 1045601
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 83.8 bits (42), Expect = 3e-013
Identities = 93/110 (84%)
Strand = Plus / Minus
Query: 273 tgctgctacaagcagaagctgagaaaggggctctggtcccctgaggaggatgagaaactc 332
|||||| ||||| |||||||||| | |||||| ||||| || |||||||| ||||| |||
Sbjct: 15096745 tgctgccacaagaagaagctgaggagggggctgtggtcgccggaggaggacgagaagctc 15096686
Query: 333 atgaatcacataacaaagcatggccatggctgctggagctctgttcccaa 382
||||||||||| | ||| ||||||| || ||||||||||| || |||||
Sbjct: 15096685 atgaatcacatcgccaagtatggccacggttgctggagctccgtccccaa 15096636
Score = 81.8 bits (41), Expect = 1e-012
Identities = 86/101 (85%)
Strand = Plus / Minus
Query: 402 tgcggaaagagttgtaggctgaggtggataaactatctgaggccagacctcaagagaggg 461
||||| ||||| || ||| |||||||||||||||| |||||||||||||||||||| ||
Sbjct: 15096408 tgcggcaagagctgcaggttgaggtggataaactacctgaggccagacctcaagaggggc 15096349
Query: 462 gcattcgcccaagacgaagaagacctcatcatcgagctgca 502
| ||| |||| || || |||||||||||||| |||||||
Sbjct: 15096348 accttctcccaggaggaggaagacctcatcattcagctgca 15096308
Score = 46.1 bits (23), Expect = 0.074
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 400 ggtgcggaaagagttgtaggctgaggtggataaactatctgag 442
||||||||||||| || |||||| ||||||| ||||| |||||
Sbjct: 10963375 ggtgcggaaagagctgcaggctgcggtggatcaactacctgag 10963333
Score = 44.1 bits (22), Expect = 0.29
Identities = 49/58 (84%)
Strand = Plus / Minus
Query: 517 acaggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaa 574
|||||||||| ||| |||||||||||||| ||| |||| || ||||| ||||||||
Sbjct: 32556151 acaggtggtcgataatagcagcgcagctgccggggcggacggacaatgacatcaagaa 32556094
Score = 44.1 bits (22), Expect = 0.29
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 477 gaagaagacctcatcatcgagctgcacgctgtcctcgggaacaggt 522
||||| ||| |||||||| |||| |||||| ||||||||||||||
Sbjct: 10963298 gaagaggacgtcatcatcaagctccacgctaccctcgggaacaggt 10963253
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 83.8 bits (42), Expect = 3e-013
Identities = 93/110 (84%)
Strand = Plus / Minus
Query: 273 tgctgctacaagcagaagctgagaaaggggctctggtcccctgaggaggatgagaaactc 332
|||||| ||||| |||||||||| | |||||| ||||| || |||||||| ||||| |||
Sbjct: 14432716 tgctgccacaagaagaagctgaggagggggctgtggtcgccggaggaggacgagaagctc 14432657
Query: 333 atgaatcacataacaaagcatggccatggctgctggagctctgttcccaa 382
||||||||||| | ||| ||||||| || ||||||||||| || |||||
Sbjct: 14432656 atgaatcacatcgccaagtatggccacggttgctggagctccgtccccaa 14432607
Score = 81.8 bits (41), Expect = 1e-012
Identities = 86/101 (85%)
Strand = Plus / Minus
Query: 402 tgcggaaagagttgtaggctgaggtggataaactatctgaggccagacctcaagagaggg 461
||||| ||||| || ||| |||||||||||||||| |||||||||||||||||||| ||
Sbjct: 14432379 tgcggcaagagctgcaggttgaggtggataaactacctgaggccagacctcaagaggggc 14432320
Query: 462 gcattcgcccaagacgaagaagacctcatcatcgagctgca 502
| ||| |||| || || |||||||||||||| |||||||
Sbjct: 14432319 accttctcccaggaggaggaagacctcatcattcagctgca 14432279
Score = 61.9 bits (31), Expect = 1e-006
Identities = 73/87 (83%)
Strand = Plus / Minus
Query: 518 caggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatct 577
||||||||| || || || ||||||||||| ||| |||| || || ||| ||||||| |
Sbjct: 14432164 caggtggtcgcagatcgcggcgcagctgccggggcggaccgacaacgaggtcaagaactt 14432105
Query: 578 atggaactcgtgcatcaagaagaagct 604
|||||||||| |||||||||||||||
Sbjct: 14432104 ctggaactcgtacatcaagaagaagct 14432078
Score = 46.1 bits (23), Expect = 0.074
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 400 ggtgcggaaagagttgtaggctgaggtggataaactatctgag 442
||||||||||||| || |||||| ||||||| ||||| |||||
Sbjct: 10682636 ggtgcggaaagagctgcaggctgcggtggatcaactacctgag 10682594
Score = 44.1 bits (22), Expect = 0.29
Identities = 49/58 (84%)
Strand = Plus / Minus
Query: 517 acaggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaa 574
|||||||||| ||| |||||||||||||| ||| |||| || ||||| ||||||||
Sbjct: 31740486 acaggtggtcgataatagcagcgcagctgccggggcggacggacaatgacatcaagaa 31740429
Score = 44.1 bits (22), Expect = 0.29
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 477 gaagaagacctcatcatcgagctgcacgctgtcctcgggaacaggt 522
||||| ||| |||||||| |||| |||||| ||||||||||||||
Sbjct: 10682559 gaagaggacgtcatcatcaagctccacgctaccctcgggaacaggt 10682514
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 83.8 bits (42), Expect = 3e-013
Identities = 93/110 (84%)
Strand = Plus / Minus
Query: 273 tgctgctacaagcagaagctgagaaaggggctctggtcccctgaggaggatgagaaactc 332
|||||| ||||| |||||||||| | |||||| ||||| || |||||||| ||||| |||
Sbjct: 14437741 tgctgccacaagaagaagctgaggagggggctgtggtcgccggaggaggacgagaagctc 14437682
Query: 333 atgaatcacataacaaagcatggccatggctgctggagctctgttcccaa 382
||||||||||| | ||| ||||||| || ||||||||||| || |||||
Sbjct: 14437681 atgaatcacatcgccaagtatggccacggttgctggagctccgtccccaa 14437632
Score = 81.8 bits (41), Expect = 1e-012
Identities = 86/101 (85%)
Strand = Plus / Minus
Query: 402 tgcggaaagagttgtaggctgaggtggataaactatctgaggccagacctcaagagaggg 461
||||| ||||| || ||| |||||||||||||||| |||||||||||||||||||| ||
Sbjct: 14437404 tgcggcaagagctgcaggttgaggtggataaactacctgaggccagacctcaagaggggc 14437345
Query: 462 gcattcgcccaagacgaagaagacctcatcatcgagctgca 502
| ||| |||| || || |||||||||||||| |||||||
Sbjct: 14437344 accttctcccaggaggaggaagacctcatcattcagctgca 14437304
Score = 61.9 bits (31), Expect = 1e-006
Identities = 73/87 (83%)
Strand = Plus / Minus
Query: 518 caggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatct 577
||||||||| || || || ||||||||||| ||| |||| || || ||| ||||||| |
Sbjct: 14437189 caggtggtcgcagatcgcggcgcagctgccggggcggaccgacaacgaggtcaagaactt 14437130
Query: 578 atggaactcgtgcatcaagaagaagct 604
|||||||||| |||||||||||||||
Sbjct: 14437129 ctggaactcgtacatcaagaagaagct 14437103
Score = 46.1 bits (23), Expect = 0.074
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 400 ggtgcggaaagagttgtaggctgaggtggataaactatctgag 442
||||||||||||| || |||||| ||||||| ||||| |||||
Sbjct: 10684535 ggtgcggaaagagctgcaggctgcggtggatcaactacctgag 10684493
Score = 44.1 bits (22), Expect = 0.29
Identities = 49/58 (84%)
Strand = Plus / Minus
Query: 517 acaggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaa 574
|||||||||| ||| |||||||||||||| ||| |||| || ||||| ||||||||
Sbjct: 31649970 acaggtggtcgataatagcagcgcagctgccggggcggacggacaatgacatcaagaa 31649913
Score = 44.1 bits (22), Expect = 0.29
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 477 gaagaagacctcatcatcgagctgcacgctgtcctcgggaacaggt 522
||||| ||| |||||||| |||| |||||| ||||||||||||||
Sbjct: 10684458 gaagaggacgtcatcatcaagctccacgctaccctcgggaacaggt 10684413
>gb|AQ688548.1|AQ688548 nbxb0077J20f CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0077J20f, DNA sequence
Length = 583
Score = 81.8 bits (41), Expect = 1e-012
Identities = 86/101 (85%)
Strand = Plus / Plus
Query: 402 tgcggaaagagttgtaggctgaggtggataaactatctgaggccagacctcaagagaggg 461
||||| ||||| || ||| |||||||||||||||| |||||||||||||||||||| ||
Sbjct: 223 tgcggcaagagctgcaggttgaggtggataaactacctgaggccagacctcaagaggggc 282
Query: 462 gcattcgcccaagacgaagaagacctcatcatcgagctgca 502
| ||| |||| || || |||||||||||||| |||||||
Sbjct: 283 accttctcccaggaggaggaagacctcatcattcagctgca 323
>gb|AQ255921.1|AQ255921 nbxb0014H01r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0014H01r, DNA sequence
Length = 705
Score = 77.8 bits (39), Expect = 2e-011
Identities = 75/87 (86%)
Strand = Plus / Minus
Query: 408 aagagttgtaggctgaggtggataaactatctgaggccagacctcaagagaggggcattc 467
||||| || ||||| ||||| |||||||| || ||||||||||||||||| || ||||||
Sbjct: 339 aagagctgcaggctaaggtgaataaactacctcaggccagacctcaagaggggagcattc 280
Query: 468 gcccaagacgaagaagacctcatcatc 494
| || || ||||||||||||||||||
Sbjct: 279 tcacaggaagaagaagacctcatcatc 253
>gb|AU097474.1|AU097474 AU097474 Rice shoot Oryza sativa (japonica cultivar-group) cDNA clone
S5087, mRNA sequence
Length = 715
Score = 73.8 bits (37), Expect = 3e-010
Identities = 117/144 (81%)
Strand = Plus / Plus
Query: 1396 tcaaggcagagagccaattcaacatagaagggatatgtgcttcttggttccagaatcagc 1455
|||| |||||||||||||||||||| || ||| | ||||| |||||| || || | ||
Sbjct: 209 tcaaagcagagagccaattcaacatggaggggctctgtgcagcttggtctcaaaacctgc 268
Query: 1456 agccacagcaacagctgcaggtagcaccagacatgtatgacaaggacttgcaaagaatgc 1515
|||||||||||| || | |||| | |||| |||||||||||||| |||||||| |||
Sbjct: 269 tgccacagcaacatcttccagtagtatcagatatgtatgacaaggatttgcaaaggatgn 328
Query: 1516 aactatcttttgagaatatctagg 1539
| |||||||||||||||||||
Sbjct: 329 ccttgtcttttgagaatatctagg 352
>ref|NM_193333.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1074
Score = 73.8 bits (37), Expect = 3e-010
Identities = 76/89 (85%)
Strand = Plus / Plus
Query: 516 aacaggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaat 575
||||||||||| || ||||| ||||||||||| || |||| || || |||||||||||
Sbjct: 268 aacaggtggtcccagattgcggcgcagctgcccggccggacggacaacgagatcaagaac 327
Query: 576 ctatggaactcgtgcatcaagaagaagct 604
| |||||||||||| |||||||||||||
Sbjct: 328 ttctggaactcgtgcctcaagaagaagct 356
Score = 60.0 bits (30), Expect = 5e-006
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 399 aggtgcggaaagagttgtaggctgaggtggataaactatctgaggccagacctcaagaga 458
||||| || |||||||| |||||||| ||||| ||||| |||||||| || |||||||||
Sbjct: 151 aggtgtggcaagagttgcaggctgagatggatcaactacctgaggcctgatctcaagaga 210
Query: 459 gg 460
||
Sbjct: 211 gg 212
>gb|AU085934.1|AU085934 AU085934 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E2888, mRNA sequence
Length = 711
Score = 71.9 bits (36), Expect = 1e-009
Identities = 145/182 (79%)
Strand = Plus / Plus
Query: 1358 catgcagaaccagagccaaacgctttatgatgatgtgatcaaggcagagagccaattcaa 1417
||||||||||| ||||| | || ||||| || || |||| |||||||||||||||||
Sbjct: 226 catgcagaaccttagccagtcactgtatgaagacgttntcaaagcagagagccaattcaa 285
Query: 1418 catagaagggatatgtgcttcttggttccagaatcagcagccacagcaacagctgcaggt 1477
||| || ||| | ||||| |||||| || || | || |||||||||||| || | ||
Sbjct: 286 catggaggggctctgtgcngcttggtctcaaaacctgctgccacagcaacatcttccagt 345
Query: 1478 agcaccagacatgtatgacaaggacttgcaaagaatgcaactatcttttgagaatatcta 1537
|| | |||| |||||||||||||| |||||||| ||| | |||||||||||||||||
Sbjct: 346 agtatcagatatgtatgacaaggatttgcaaaggatgtccttgtcttttgagaatatcta 405
Query: 1538 gg 1539
||
Sbjct: 406 gg 407
>gb|AACV01001493.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg001493, whole
genome shotgun sequence
Length = 20984
Score = 69.9 bits (35), Expect = 5e-009
Identities = 74/87 (85%)
Strand = Plus / Minus
Query: 518 caggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatct 577
||||||||| || ||||| ||||||||||| || |||| || || ||||||||||| |
Sbjct: 7765 caggtggtcccagattgcggcgcagctgcccggccggacggacaacgagatcaagaactt 7706
Query: 578 atggaactcgtgcatcaagaagaagct 604
|||||||||||| |||||||||||||
Sbjct: 7705 ctggaactcgtgcctcaagaagaagct 7679
Score = 60.0 bits (30), Expect = 5e-006
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 399 aggtgcggaaagagttgtaggctgaggtggataaactatctgaggccagacctcaagaga 458
||||| || |||||||| |||||||| ||||| ||||| |||||||| || |||||||||
Sbjct: 8338 aggtgtggcaagagttgcaggctgagatggatcaactacctgaggcctgatctcaagaga 8279
Query: 459 gg 460
||
Sbjct: 8278 gg 8277
>ref|NT_079926.2| Oryza sativa (japonica cultivar-group)
Length = 8469246
Score = 69.9 bits (35), Expect = 5e-009
Identities = 74/87 (85%)
Strand = Plus / Minus
Query: 518 caggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatct 577
||||||||| || ||||| ||||||||||| || |||| || || ||||||||||| |
Sbjct: 3234754 caggtggtcccagattgcggcgcagctgcccggccggacggacaacgagatcaagaactt 3234695
Query: 578 atggaactcgtgcatcaagaagaagct 604
|||||||||||| |||||||||||||
Sbjct: 3234694 ctggaactcgtgcctcaagaagaagct 3234668
Score = 60.0 bits (30), Expect = 5e-006
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 399 aggtgcggaaagagttgtaggctgaggtggataaactatctgaggccagacctcaagaga 458
||||| || |||||||| |||||||| ||||| ||||| |||||||| || |||||||||
Sbjct: 3235327 aggtgtggcaagagttgcaggctgagatggatcaactacctgaggcctgatctcaagaga 3235268
Query: 459 gg 460
||
Sbjct: 3235267 gg 3235266
Score = 40.1 bits (20), Expect = 4.5
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1768 tcctttcctttctcttgaaa 1787
||||||||||||||||||||
Sbjct: 6731030 tcctttcctttctcttgaaa 6731011
>dbj|AP004231.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:OSJNBa0026J14
Length = 163496
Score = 69.9 bits (35), Expect = 5e-009
Identities = 74/87 (85%)
Strand = Plus / Minus
Query: 518 caggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatct 577
||||||||| || ||||| ||||||||||| || |||| || || ||||||||||| |
Sbjct: 3838 caggtggtcccagattgcggcgcagctgcccggccggacggacaacgagatcaagaactt 3779
Query: 578 atggaactcgtgcatcaagaagaagct 604
|||||||||||| |||||||||||||
Sbjct: 3778 ctggaactcgtgcctcaagaagaagct 3752
Score = 60.0 bits (30), Expect = 5e-006
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 399 aggtgcggaaagagttgtaggctgaggtggataaactatctgaggccagacctcaagaga 458
||||| || |||||||| |||||||| ||||| ||||| |||||||| || |||||||||
Sbjct: 4411 aggtgtggcaagagttgcaggctgagatggatcaactacctgaggcctgatctcaagaga 4352
Query: 459 gg 460
||
Sbjct: 4351 gg 4350
>dbj|AP004232.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:OSJNBa0051H17
Length = 187471
Score = 69.9 bits (35), Expect = 5e-009
Identities = 74/87 (85%)
Strand = Plus / Minus
Query: 518 caggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatct 577
||||||||| || ||||| ||||||||||| || |||| || || ||||||||||| |
Sbjct: 144183 caggtggtcccagattgcggcgcagctgcccggccggacggacaacgagatcaagaactt 144124
Query: 578 atggaactcgtgcatcaagaagaagct 604
|||||||||||| |||||||||||||
Sbjct: 144123 ctggaactcgtgcctcaagaagaagct 144097
Score = 60.0 bits (30), Expect = 5e-006
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 399 aggtgcggaaagagttgtaggctgaggtggataaactatctgaggccagacctcaagaga 458
||||| || |||||||| |||||||| ||||| ||||| |||||||| || |||||||||
Sbjct: 144756 aggtgtggcaagagttgcaggctgagatggatcaactacctgaggcctgatctcaagaga 144697
Query: 459 gg 460
||
Sbjct: 144696 gg 144695
>gb|CH401166.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000003 genomic
scaffold, whole genome shotgun sequence
Length = 8539496
Score = 69.9 bits (35), Expect = 5e-009
Identities = 74/87 (85%)
Strand = Plus / Minus
Query: 518 caggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatct 577
||||||||| || ||||| ||||||||||| || |||| || || ||||||||||| |
Sbjct: 3275263 caggtggtcccagattgcggcgcagctgcccggccggacggacaacgagatcaagaactt 3275204
Query: 578 atggaactcgtgcatcaagaagaagct 604
|||||||||||| |||||||||||||
Sbjct: 3275203 ctggaactcgtgcctcaagaagaagct 3275177
Score = 60.0 bits (30), Expect = 5e-006
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 399 aggtgcggaaagagttgtaggctgaggtggataaactatctgaggccagacctcaagaga 458
||||| || |||||||| |||||||| ||||| ||||| |||||||| || |||||||||
Sbjct: 3275836 aggtgtggcaagagttgcaggctgagatggatcaactacctgaggcctgatctcaagaga 3275777
Query: 459 gg 460
||
Sbjct: 3275776 gg 3275775
Score = 40.1 bits (20), Expect = 4.5
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1768 tcctttcctttctcttgaaa 1787
||||||||||||||||||||
Sbjct: 6660836 tcctttcctttctcttgaaa 6660817
>gb|D47363.1|D47363 RICS12691A Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA, mRNA sequence
Length = 406
Score = 67.9 bits (34), Expect = 2e-008
Identities = 64/74 (86%)
Strand = Plus / Plus
Query: 363 tgctggagctctgttcccaaactcgctgggcttcaaaggtgcggaaagagttgtaggctg 422
||||||||||| |||||||| ||||| ||||| || |||||||| ||||| || ||||||
Sbjct: 192 tgctggagctccgttcccaagctcgcagggctccagaggtgcggcaagagctgcaggctg 251
Query: 423 aggtggataaacta 436
||||||| |||||
Sbjct: 252 cggtggatcaacta 265
Score = 44.1 bits (22), Expect = 0.29
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 283 agcagaagctgagaaaggggctctggtcccctgaggaggatgagaa 328
||||||||||| | |||||||||||||| || ||||| || |||||
Sbjct: 112 agcagaagctgcgcaaggggctctggtctcccgaggaagacgagaa 157
>dbj|AK111782.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023084H22, full
insert sequence
Length = 1514
Score = 67.9 bits (34), Expect = 2e-008
Identities = 64/74 (86%)
Strand = Plus / Plus
Query: 363 tgctggagctctgttcccaaactcgctgggcttcaaaggtgcggaaagagttgtaggctg 422
||||||||||| |||||||| ||||| ||||| || |||||||| ||||| || ||||||
Sbjct: 395 tgctggagctccgttcccaagctcgcagggctccagaggtgcggcaagagctgcaggctg 454
Query: 423 aggtggataaacta 436
||||||| |||||
Sbjct: 455 cggtggatcaacta 468
Score = 58.0 bits (29), Expect = 2e-005
Identities = 101/125 (80%)
Strand = Plus / Plus
Query: 516 aacaggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaat 575
||||||||||| ||||| || |||| |||| |||||||| || || |||||||||||
Sbjct: 548 aacaggtggtcgcaaatcgcgtcgcacttgccggggaggacggacaacgagatcaagaac 607
Query: 576 ctatggaactcgtgcatcaagaagaagctgaggcagaaaggcattgatcccaacacccac 635
| |||||| ||| |||||||||||||||||||| ||||| || |||| |||||||
Sbjct: 608 ttctggaacagctgcctcaagaagaagctgaggcagcgcggcatcgaccccagcacccac 667
Query: 636 aagcc 640
||||
Sbjct: 668 cagcc 672
Score = 44.1 bits (22), Expect = 0.29
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 283 agcagaagctgagaaaggggctctggtcccctgaggaggatgagaa 328
||||||||||| | |||||||||||||| || ||||| || |||||
Sbjct: 315 agcagaagctgcgcaaggggctctggtctcccgaggaagacgagaa 360
>gb|CV720744.1|CV720744 YBH--01-L04.b1 Rice before heading yeast two hybrid lambda phage
cDNA library (YBH) Oryza sativa (japonica
cultivar-group) cDNA clone YBH--01-L04, mRNA sequence
Length = 455
Score = 63.9 bits (32), Expect = 3e-007
Identities = 86/104 (82%)
Strand = Plus / Plus
Query: 354 ggccatggctgctggagctctgttcccaaactcgctgggcttcaaaggtgcggaaagagt 413
|||||||||||||||||||| || |||| || || ||| | || || || || |||||
Sbjct: 178 ggccatggctgctggagctccgtccccaggctagccgggttgcagagatgtggcaagagc 237
Query: 414 tgtaggctgaggtggataaactatctgaggccagacctcaagag 457
|| |||||||||||||| ||||| |||||||| ||||| |||||
Sbjct: 238 tgcaggctgaggtggatcaactacctgaggcctgacctgaagag 281
>gb|BP184381.1|BP184381 BP184381 pNS rice panicle cDNA, germ cell generating stage Oryza
sativa (japonica cultivar-group) cDNA clone 12FPG041,
mRNA sequence
Length = 443
Score = 63.9 bits (32), Expect = 3e-007
Identities = 86/104 (82%)
Strand = Plus / Plus
Query: 354 ggccatggctgctggagctctgttcccaaactcgctgggcttcaaaggtgcggaaagagt 413
|||||||||||||||||||| || |||| || || ||| | || || || || |||||
Sbjct: 112 ggccatggctgctggagctccgtccccaggctagccgggttgcagagatgtggcaagagc 171
Query: 414 tgtaggctgaggtggataaactatctgaggccagacctcaagag 457
|| |||||||||||||| ||||| |||||||| ||||| |||||
Sbjct: 172 tgcaggctgaggtggatcaactacctgaggcctgacctgaagag 215
>ref|NM_191687.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 924
Score = 63.9 bits (32), Expect = 3e-007
Identities = 86/104 (82%)
Strand = Plus / Plus
Query: 354 ggccatggctgctggagctctgttcccaaactcgctgggcttcaaaggtgcggaaagagt 413
|||||||||||||||||||| || |||| || || ||| | || || || || |||||
Sbjct: 97 ggccatggctgctggagctccgtccccaggctagccgggttgcagagatgtggcaagagc 156
Query: 414 tgtaggctgaggtggataaactatctgaggccagacctcaagag 457
|| |||||||||||||| ||||| |||||||| ||||| |||||
Sbjct: 157 tgcaggctgaggtggatcaactacctgaggcctgacctgaagag 200
>gb|C74144.1|C74144 C74144 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E30494_1A, mRNA sequence
Length = 263
Score = 61.9 bits (31), Expect = 1e-006
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 399 aggtgcggaaagagttgtaggctgaggtggataaactatctgaggccagacctcaagag 457
|||||||| ||||| || ||||||||||||| ||||| |||||||| |||||||||||
Sbjct: 19 aggtgcgggaagagctgcaggctgaggtggaccaactacctgaggcccgacctcaagag 77
>gb|AU081563.1|AU081563 AU081563 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E30494_8Z, mRNA sequence
Length = 409
Score = 61.9 bits (31), Expect = 1e-006
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 399 aggtgcggaaagagttgtaggctgaggtggataaactatctgaggccagacctcaagag 457
|||||||| ||||| || ||||||||||||| ||||| |||||||| |||||||||||
Sbjct: 20 aggtgcgggaagagctgcaggctgaggtggaccaactacctgaggcccgacctcaagag 78
>dbj|AK107483.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-129-C06, full
insert sequence
Length = 1163
Score = 61.9 bits (31), Expect = 1e-006
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 399 aggtgcggaaagagttgtaggctgaggtggataaactatctgaggccagacctcaagag 457
|||||||| ||||| || ||||||||||||| ||||| |||||||| |||||||||||
Sbjct: 320 aggtgcgggaagagctgcaggctgaggtggaccaactacctgaggcccgacctcaagag 378
>dbj|AP005527.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0603C10
Length = 187620
Score = 61.9 bits (31), Expect = 1e-006
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 399 aggtgcggaaagagttgtaggctgaggtggataaactatctgaggccagacctcaagag 457
|||||||| ||||| || ||||||||||||| ||||| |||||||| |||||||||||
Sbjct: 55775 aggtgcgggaagagctgcaggctgaggtggaccaactacctgaggcccgacctcaagag 55833
>dbj|AP005619.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0624H09
Length = 158719
Score = 61.9 bits (31), Expect = 1e-006
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 399 aggtgcggaaagagttgtaggctgaggtggataaactatctgaggccagacctcaagag 457
|||||||| ||||| || ||||||||||||| ||||| |||||||| |||||||||||
Sbjct: 154633 aggtgcgggaagagctgcaggctgaggtggaccaactacctgaggcccgacctcaagag 154691
>gb|AACV01013461.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg013461, whole
genome shotgun sequence
Length = 19074
Score = 61.9 bits (31), Expect = 1e-006
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 399 aggtgcggaaagagttgtaggctgaggtggataaactatctgaggccagacctcaagag 457
|||||||| ||||| || ||||||||||||| ||||| |||||||| |||||||||||
Sbjct: 18008 aggtgcgggaagagctgcaggctgaggtggaccaactacctgaggcccgacctcaagag 18066
>ref|NT_079873.2| Oryza sativa (japonica cultivar-group)
Length = 5116111
Score = 61.9 bits (31), Expect = 1e-006
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 399 aggtgcggaaagagttgtaggctgaggtggataaactatctgaggccagacctcaagag 457
|||||||| ||||| || ||||||||||||| ||||| |||||||| |||||||||||
Sbjct: 3953850 aggtgcgggaagagctgcaggctgaggtggaccaactacctgaggcccgacctcaagag 3953908
>gb|CH401209.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000046 genomic
scaffold, whole genome shotgun sequence
Length = 8607552
Score = 61.9 bits (31), Expect = 1e-006
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 399 aggtgcggaaagagttgtaggctgaggtggataaactatctgaggccagacctcaagag 457
|||||||| ||||| || ||||||||||||| ||||| |||||||| |||||||||||
Sbjct: 8232751 aggtgcgggaagagctgcaggctgaggtggaccaactacctgaggcccgacctcaagag 8232809
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 61.9 bits (31), Expect = 1e-006
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 399 aggtgcggaaagagttgtaggctgaggtggataaactatctgaggccagacctcaagag 457
|||||||| ||||| || ||||||||||||| ||||| |||||||| |||||||||||
Sbjct: 8232751 aggtgcgggaagagctgcaggctgaggtggaccaactacctgaggcccgacctcaagag 8232809
Score = 42.1 bits (21), Expect = 1.1
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 332 catgaatcacataacaaagca 352
|||||||||||||||||||||
Sbjct: 29673117 catgaatcacataacaaagca 29673137
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 61.9 bits (31), Expect = 1e-006
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 399 aggtgcggaaagagttgtaggctgaggtggataaactatctgaggccagacctcaagag 457
|||||||| ||||| || ||||||||||||| ||||| |||||||| |||||||||||
Sbjct: 8262270 aggtgcgggaagagctgcaggctgaggtggaccaactacctgaggcccgacctcaagag 8262328
Score = 42.1 bits (21), Expect = 1.1
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 332 catgaatcacataacaaagca 352
|||||||||||||||||||||
Sbjct: 30652060 catgaatcacataacaaagca 30652080
>gb|AU082324.1|AU082324 AU082324 Rice panicle (longer than 10cm) Oryza sativa (japonica
cultivar-group) cDNA clone E20460, mRNA sequence
Length = 363
Score = 60.0 bits (30), Expect = 5e-006
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 399 aggtgcggaaagagttgtaggctgaggtggataaactatctgaggccagacctcaagaga 458
||||| || |||||||| |||||||| ||||| ||||| |||||||| || |||||||||
Sbjct: 184 aggtgtggcaagagttgcaggctgagatggatcaactacctgaggcctgatctcaagaga 125
Query: 459 gg 460
||
Sbjct: 124 gg 123
>gb|AU094689.1|AU094689 AU094689 Rice panicle (longer than 10cm) Oryza sativa (japonica
cultivar-group) cDNA clone E20539, mRNA sequence
Length = 292
Score = 60.0 bits (30), Expect = 5e-006
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 399 aggtgcggaaagagttgtaggctgaggtggataaactatctgaggccagacctcaagaga 458
||||| || |||||||| |||||||| ||||| ||||| |||||||| || |||||||||
Sbjct: 111 aggtgtggcaagagttgcaggctgagatggatcaactacctgaggcctgatctcaagaga 52
Query: 459 gg 460
||
Sbjct: 51 gg 50
>gb|BP184885.1|BP184885 BP184885 pNS rice callus cDNA Oryza sativa (japonica
cultivar-group) cDNA clone 22C4AG011, mRNA sequence
Length = 688
Score = 60.0 bits (30), Expect = 5e-006
Identities = 99/122 (81%)
Strand = Plus / Plus
Query: 483 gacctcatcatcgagctgcacgctgtcctcgggaacaggtggtctcaaattgcagcgcag 542
||||||||| ||| |||||||| ||||||||||||||||||| || || || ||||
Sbjct: 42 gacctcatcgtcgcgctgcacgagatcctcgggaacaggtggtcgcagatcgcgtcgcac 101
Query: 543 ctgccagggaggactgataatgagatcaagaatctatggaactcgtgcatcaagaagaag 602
|||| |||||||| || || ||||||||||| | |||||| ||| |||||||||||
Sbjct: 102 ttgccggggaggacggacaacgagatcaagaacttctggaacagctgcctcaagaagaag 161
Query: 603 ct 604
||
Sbjct: 162 ct 163
>ref|NM_192221.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 909
Score = 58.0 bits (29), Expect = 2e-005
Identities = 101/125 (80%)
Strand = Plus / Plus
Query: 516 aacaggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaat 575
||||||||||| ||||| || |||| |||| |||||||| || || |||||||||||
Sbjct: 271 aacaggtggtcgcaaatcgcgtcgcacttgccggggaggacggacaacgagatcaagaac 330
Query: 576 ctatggaactcgtgcatcaagaagaagctgaggcagaaaggcattgatcccaacacccac 635
| |||||| ||| |||||||||||||||||||| ||||| || |||| |||||||
Sbjct: 331 ttctggaacagctgcctcaagaagaagctgaggcagcgcggcatcgaccccagcacccac 390
Query: 636 aagcc 640
||||
Sbjct: 391 cagcc 395
Score = 46.1 bits (23), Expect = 0.074
Identities = 64/77 (83%), Gaps = 3/77 (3%)
Strand = Plus / Plus
Query: 363 tgctggagctctgttcccaaactcgc---tgggcttcaaaggtgcggaaagagttgtagg 419
||||||||||| |||||||| ||||| | |||| || |||||||| ||||| || |||
Sbjct: 115 tgctggagctccgttcccaagctcgcaggtcggctccagaggtgcggcaagagctgcagg 174
Query: 420 ctgaggtggataaacta 436
||| ||||||| |||||
Sbjct: 175 ctgcggtggatcaacta 191
Score = 44.1 bits (22), Expect = 0.29
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 283 agcagaagctgagaaaggggctctggtcccctgaggaggatgagaa 328
||||||||||| | |||||||||||||| || ||||| || |||||
Sbjct: 35 agcagaagctgcgcaaggggctctggtctcccgaggaagacgagaa 80
>gb|AACV01002173.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002173, whole
genome shotgun sequence
Length = 2583
Score = 54.0 bits (27), Expect = 3e-004
Identities = 99/123 (80%)
Strand = Plus / Minus
Query: 518 caggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatct 577
||||||||| ||||| || |||| |||| |||||||| || || ||||||||||| |
Sbjct: 1091 caggtggtcgcaaatcgcgtcgcacttgccggggaggacggacaacgagatcaagaactt 1032
Query: 578 atggaactcgtgcatcaagaagaagctgaggcagaaaggcattgatcccaacacccacaa 637
|||||| ||| |||||||||||||||||||| ||||| || |||| ||||||| |
Sbjct: 1031 ctggaacagctgcctcaagaagaagctgaggcagcgcggcatcgaccccagcacccacca 972
Query: 638 gcc 640
|||
Sbjct: 971 gcc 969
Score = 44.1 bits (22), Expect = 0.29
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 283 agcagaagctgagaaaggggctctggtcccctgaggaggatgagaa 328
||||||||||| | |||||||||||||| || ||||| || |||||
Sbjct: 1550 agcagaagctgcgcaaggggctctggtctcccgaggaagacgagaa 1505
>gb|AACV01016284.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg016284, whole
genome shotgun sequence
Length = 43156
Score = 54.0 bits (27), Expect = 3e-004
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 570 aagaatctatggaactcgtgcatcaagaagaagct 604
|||||| | ||||||||||||||||||||||||||
Sbjct: 20056 aagaatttctggaactcgtgcatcaagaagaagct 20022
>ref|NM_187376.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1203
Score = 54.0 bits (27), Expect = 3e-004
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 570 aagaatctatggaactcgtgcatcaagaagaagct 604
|||||| | ||||||||||||||||||||||||||
Sbjct: 310 aagaatttctggaactcgtgcatcaagaagaagct 344
>ref|NT_079927.2| Oryza sativa (japonica cultivar-group)
Length = 14818989
Score = 54.0 bits (27), Expect = 3e-004
Identities = 99/123 (80%)
Strand = Plus / Minus
Query: 518 caggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatct 577
||||||||| ||||| || |||| |||| |||||||| || || ||||||||||| |
Sbjct: 3654447 caggtggtcgcaaatcgcgtcgcacttgccggggaggacggacaacgagatcaagaactt 3654388
Query: 578 atggaactcgtgcatcaagaagaagctgaggcagaaaggcattgatcccaacacccacaa 637
|||||| ||| |||||||||||||||||||| ||||| || |||| ||||||| |
Sbjct: 3654387 ctggaacagctgcctcaagaagaagctgaggcagcgcggcatcgaccccagcacccacca 3654328
Query: 638 gcc 640
|||
Sbjct: 3654327 gcc 3654325
Score = 52.0 bits (26), Expect = 0.001
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 408 aagagttgtaggctgaggtggataaactatctgaggccagacctcaagag 457
||||| || |||||||||||||| ||||| |||||||| ||||| |||||
Sbjct: 3991290 aagagctgcaggctgaggtggatcaactacctgaggcctgacctgaagag 3991339
Score = 44.1 bits (22), Expect = 0.29
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 283 agcagaagctgagaaaggggctctggtcccctgaggaggatgagaa 328
||||||||||| | |||||||||||||| || ||||| || |||||
Sbjct: 3654906 agcagaagctgcgcaaggggctctggtctcccgaggaagacgagaa 3654861
Score = 40.1 bits (20), Expect = 4.5
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 539 gcagctgccagggaggactgataatgagatcaagaa 574
||||||||| |||||||| || || |||||||||||
Sbjct: 12454025 gcagctgccggggaggacggacaacgagatcaagaa 12454060
Score = 40.1 bits (20), Expect = 4.5
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 354 ggccatggctgctggagctc 373
||||||||||||||||||||
Sbjct: 3991069 ggccatggctgctggagctc 3991088
>dbj|AP004259.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
clone:P0005E02
Length = 89380
Score = 54.0 bits (27), Expect = 3e-004
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 570 aagaatctatggaactcgtgcatcaagaagaagct 604
|||||| | ||||||||||||||||||||||||||
Sbjct: 58611 aagaatttctggaactcgtgcatcaagaagaagct 58577
>dbj|AP004006.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OJ1197_D06
Length = 103844
Score = 54.0 bits (27), Expect = 3e-004
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 570 aagaatctatggaactcgtgcatcaagaagaagct 604
|||||| | ||||||||||||||||||||||||||
Sbjct: 31123 aagaatttctggaactcgtgcatcaagaagaagct 31089
>dbj|AP003245.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0421H07
Length = 158126
Score = 54.0 bits (27), Expect = 3e-004
Identities = 99/123 (80%)
Strand = Plus / Minus
Query: 518 caggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatct 577
||||||||| ||||| || |||| |||| |||||||| || || ||||||||||| |
Sbjct: 86760 caggtggtcgcaaatcgcgtcgcacttgccggggaggacggacaacgagatcaagaactt 86701
Query: 578 atggaactcgtgcatcaagaagaagctgaggcagaaaggcattgatcccaacacccacaa 637
|||||| ||| |||||||||||||||||||| ||||| || |||| ||||||| |
Sbjct: 86700 ctggaacagctgcctcaagaagaagctgaggcagcgcggcatcgaccccagcacccacca 86641
Query: 638 gcc 640
|||
Sbjct: 86640 gcc 86638
Score = 44.1 bits (22), Expect = 0.29
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 283 agcagaagctgagaaaggggctctggtcccctgaggaggatgagaa 328
||||||||||| | |||||||||||||| || ||||| || |||||
Sbjct: 87219 agcagaagctgcgcaaggggctctggtctcccgaggaagacgagaa 87174
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 54.0 bits (27), Expect = 3e-004
Identities = 99/123 (80%)
Strand = Plus / Minus
Query: 518 caggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatct 577
||||||||| ||||| || |||| |||| |||||||| || || ||||||||||| |
Sbjct: 3578690 caggtggtcgcaaatcgcgtcgcacttgccggggaggacggacaacgagatcaagaactt 3578631
Query: 578 atggaactcgtgcatcaagaagaagctgaggcagaaaggcattgatcccaacacccacaa 637
|||||| ||| |||||||||||||||||||| ||||| || |||| ||||||| |
Sbjct: 3578630 ctggaacagctgcctcaagaagaagctgaggcagcgcggcatcgaccccagcacccacca 3578571
Query: 638 gcc 640
|||
Sbjct: 3578570 gcc 3578568
Score = 52.0 bits (26), Expect = 0.001
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 408 aagagttgtaggctgaggtggataaactatctgaggccagacctcaagag 457
||||| || |||||||||||||| ||||| |||||||| ||||| |||||
Sbjct: 3902254 aagagctgcaggctgaggtggatcaactacctgaggcctgacctgaagag 3902303
Score = 44.1 bits (22), Expect = 0.29
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 283 agcagaagctgagaaaggggctctggtcccctgaggaggatgagaa 328
||||||||||| | |||||||||||||| || ||||| || |||||
Sbjct: 3579149 agcagaagctgcgcaaggggctctggtctcccgaggaagacgagaa 3579104
Score = 40.1 bits (20), Expect = 4.5
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 539 gcagctgccagggaggactgataatgagatcaagaa 574
||||||||| |||||||| || || |||||||||||
Sbjct: 12183397 gcagctgccggggaggacggacaacgagatcaagaa 12183432
Score = 40.1 bits (20), Expect = 4.5
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 354 ggccatggctgctggagctc 373
||||||||||||||||||||
Sbjct: 3902033 ggccatggctgctggagctc 3902052
>gb|D47255.1|D47255 RICS12518A Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA, mRNA sequence
Length = 406
Score = 52.0 bits (26), Expect = 0.001
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 363 tgctggagctctgttcccaaactcgctgggcttcaaaggtgcggaaagag 412
||||||||||| |||||||| ||||| ||||| || |||||||| |||||
Sbjct: 192 tgctggagctccgttcccaagctcgcagggctccagaggtgcggcaagag 241
Score = 44.1 bits (22), Expect = 0.29
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 283 agcagaagctgagaaaggggctctggtcccctgaggaggatgagaa 328
||||||||||| | |||||||||||||| || ||||| || |||||
Sbjct: 112 agcagaagctgcgcaaggggctctggtctcccgaggaagacgagaa 157
>gb|C74379.1|C74379 C74379 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E31001_1A, mRNA sequence
Length = 364
Score = 52.0 bits (26), Expect = 0.001
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 363 tgctggagctctgttcccaaactcgctgggcttcaaaggtgcggaaagag 412
||||||||||| |||||||| ||||| ||||| || |||||||| |||||
Sbjct: 188 tgctggagctccgttcccaagctcgcagggctccagaggtgcggcaagag 237
Score = 44.1 bits (22), Expect = 0.29
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 283 agcagaagctgagaaaggggctctggtcccctgaggaggatgagaa 328
||||||||||| | |||||||||||||| || ||||| || |||||
Sbjct: 108 agcagaagctgcgcaaggggctctggtctcccgaggaagacgagaa 153
>gb|AACV01002207.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002207, whole
genome shotgun sequence
Length = 5640
Score = 52.0 bits (26), Expect = 0.001
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 408 aagagttgtaggctgaggtggataaactatctgaggccagacctcaagag 457
||||| || |||||||||||||| ||||| |||||||| ||||| |||||
Sbjct: 3364 aagagctgcaggctgaggtggatcaactacctgaggcctgacctgaagag 3413
Score = 40.1 bits (20), Expect = 4.5
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 354 ggccatggctgctggagctc 373
||||||||||||||||||||
Sbjct: 3143 ggccatggctgctggagctc 3162
>dbj|AP002901.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0456F08
Length = 156850
Score = 52.0 bits (26), Expect = 0.001
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 408 aagagttgtaggctgaggtggataaactatctgaggccagacctcaagag 457
||||| || |||||||||||||| ||||| |||||||| ||||| |||||
Sbjct: 29511 aagagctgcaggctgaggtggatcaactacctgaggcctgacctgaagag 29560
Score = 40.1 bits (20), Expect = 4.5
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 354 ggccatggctgctggagctc 373
||||||||||||||||||||
Sbjct: 29290 ggccatggctgctggagctc 29309
>dbj|AP002912.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0028E10
Length = 140791
Score = 50.1 bits (25), Expect = 0.005
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 408 aagagttgtaggctgaggtggataaactatctgaggccagacctcaaga 456
||||| || |||||||||||||| ||||| |||||||| ||||| ||||
Sbjct: 107389 aagagctgcaggctgaggtggatgaactacctgaggcctgacctgaaga 107341
>gb|AY459343.1| Oryza sativa (japonica cultivar-group) clone CL018501.1 R2R3-MYB gene
region
Length = 18906
Score = 50.1 bits (25), Expect = 0.005
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 408 aagagttgtaggctgaggtggataaactatctgaggccagacctcaaga 456
||||| || |||||||||||||| ||||| |||||||| ||||| ||||
Sbjct: 17477 aagagctgcaggctgaggtggatgaactacctgaggcctgacctgaaga 17525
>gb|AACV01000256.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg000256, whole
genome shotgun sequence
Length = 20201
Score = 50.1 bits (25), Expect = 0.005
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 408 aagagttgtaggctgaggtggataaactatctgaggccagacctcaaga 456
||||| || |||||||||||||| ||||| |||||||| ||||| ||||
Sbjct: 4004 aagagctgcaggctgaggtggatgaactacctgaggcctgacctgaaga 4052
>dbj|AP003339.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:OJ1276_B06
Length = 175174
Score = 50.1 bits (25), Expect = 0.005
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 408 aagagttgtaggctgaggtggataaactatctgaggccagacctcaaga 456
||||| || |||||||||||||| ||||| |||||||| ||||| ||||
Sbjct: 88697 aagagctgcaggctgaggtggatgaactacctgaggcctgacctgaaga 88649
>ref|XM_462803.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 891
Score = 50.1 bits (25), Expect = 0.005
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 408 aagagttgtaggctgaggtggataaactatctgaggccagacctcaaga 456
||||| || |||||||||||||| ||||| |||||||| ||||| ||||
Sbjct: 250 aagagctgcaggctgaggtggatgaactacctgaggcctgacctgaaga 298
>ref|XM_550262.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 873
Score = 50.1 bits (25), Expect = 0.005
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 408 aagagttgtaggctgaggtggataaactatctgaggccagacctcaaga 456
||||| || |||||||||||||| ||||| |||||||| ||||| ||||
Sbjct: 232 aagagctgcaggctgaggtggatgaactacctgaggcctgacctgaaga 280
>ref|NT_036312.3| Oryza sativa (japonica cultivar-group)
Length = 10050053
Score = 50.1 bits (25), Expect = 0.005
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 408 aagagttgtaggctgaggtggataaactatctgaggccagacctcaaga 456
||||| || |||||||||||||| ||||| |||||||| ||||| ||||
Sbjct: 3518431 aagagctgcaggctgaggtggatgaactacctgaggcctgacctgaaga 3518383
>gb|AF474141.1| Oryza sativa typical A-type R2R3 Myb protein gene, complete cds
Length = 9589
Score = 46.1 bits (23), Expect = 0.074
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 400 ggtgcggaaagagttgtaggctgaggtggataaactatctgag 442
||||||||||||| || |||||| ||||||| ||||| |||||
Sbjct: 1341 ggtgcggaaagagctgcaggctgcggtggatcaactacctgag 1383
Score = 44.1 bits (22), Expect = 0.29
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 477 gaagaagacctcatcatcgagctgcacgctgtcctcgggaacaggt 522
||||| ||| |||||||| |||| |||||| ||||||||||||||
Sbjct: 1418 gaagaggacgtcatcatcaagctccacgctaccctcgggaacaggt 1463
>dbj|AK066834.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013083O13, full
insert sequence
Length = 1069
Score = 46.1 bits (23), Expect = 0.074
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 508 tcctcgggaacaggtggtctcaaattgcagcgcagctgccagggaggactgataatgaga 567
||||||| |||| |||||||| || || | ||||||||| |||||||| || || ||||
Sbjct: 389 tcctcggcaacaagtggtctctgatcgccgggcagctgccggggaggacggacaacgaga 448
Query: 568 tcaagaa 574
|||||||
Sbjct: 449 tcaagaa 455
>dbj|AK099108.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030O22, full
insert sequence
Length = 1023
Score = 46.1 bits (23), Expect = 0.074
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 508 tcctcgggaacaggtggtctcaaattgcagcgcagctgccagggaggactgataatgaga 567
||||||| |||| |||||||| || || | ||||||||| |||||||| || || ||||
Sbjct: 393 tcctcggcaacaagtggtctctgatcgccgggcagctgccggggaggacggacaacgaga 452
Query: 568 tcaagaa 574
|||||||
Sbjct: 453 tcaagaa 459
>dbj|AK104053.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-023-G03, full
insert sequence
Length = 1042
Score = 46.1 bits (23), Expect = 0.074
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 508 tcctcgggaacaggtggtctcaaattgcagcgcagctgccagggaggactgataatgaga 567
||||||| |||| |||||||| || || | ||||||||| |||||||| || || ||||
Sbjct: 384 tcctcggcaacaagtggtctctgatcgccgggcagctgccggggaggacggacaacgaga 443
Query: 568 tcaagaa 574
|||||||
Sbjct: 444 tcaagaa 450
>gb|AC137267.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
OSJNBa0032G21, from chromosome 3, complete sequence
Length = 187621
Score = 46.1 bits (23), Expect = 0.074
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 400 ggtgcggaaagagttgtaggctgaggtggataaactatctgag 442
||||||||||||| || |||||| ||||||| ||||| |||||
Sbjct: 101449 ggtgcggaaagagctgcaggctgcggtggatcaactacctgag 101407
Score = 44.1 bits (22), Expect = 0.29
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 477 gaagaagacctcatcatcgagctgcacgctgtcctcgggaacaggt 522
||||| ||| |||||||| |||| |||||| ||||||||||||||
Sbjct: 101372 gaagaggacgtcatcatcaagctccacgctaccctcgggaacaggt 101327
>gb|AACV01006437.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006437, whole
genome shotgun sequence
Length = 32106
Score = 46.1 bits (23), Expect = 0.074
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 400 ggtgcggaaagagttgtaggctgaggtggataaactatctgag 442
||||||||||||| || |||||| ||||||| ||||| |||||
Sbjct: 24617 ggtgcggaaagagctgcaggctgcggtggatcaactacctgag 24575
Score = 44.1 bits (22), Expect = 0.29
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 477 gaagaagacctcatcatcgagctgcacgctgtcctcgggaacaggt 522
||||| ||| |||||||| |||| |||||| ||||||||||||||
Sbjct: 24540 gaagaggacgtcatcatcaagctccacgctaccctcgggaacaggt 24495
>ref|XM_475269.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 783
Score = 46.1 bits (23), Expect = 0.074
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 508 tcctcgggaacaggtggtctcaaattgcagcgcagctgccagggaggactgataatgaga 567
||||||| |||| |||||||| || || | ||||||||| |||||||| || || ||||
Sbjct: 251 tcctcggcaacaagtggtctctgatcgccgggcagctgccggggaggacggacaacgaga 310
Query: 568 tcaagaa 574
|||||||
Sbjct: 311 tcaagaa 317
>ref|NT_107192.1| Oryza sativa (japonica cultivar-group)
Length = 4781381
Score = 46.1 bits (23), Expect = 0.074
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 400 ggtgcggaaagagttgtaggctgaggtggataaactatctgag 442
||||||||||||| || |||||| ||||||| ||||| |||||
Sbjct: 2028452 ggtgcggaaagagctgcaggctgcggtggatcaactacctgag 2028410
Score = 44.1 bits (22), Expect = 0.29
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 477 gaagaagacctcatcatcgagctgcacgctgtcctcgggaacaggt 522
||||| ||| |||||||| |||| |||||| ||||||||||||||
Sbjct: 2028375 gaagaggacgtcatcatcaagctccacgctaccctcgggaacaggt 2028330
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
scaffold, whole genome shotgun sequence
Length = 13858245
Score = 46.1 bits (23), Expect = 0.074
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 400 ggtgcggaaagagttgtaggctgaggtggataaactatctgag 442
||||||||||||| || |||||| ||||||| ||||| |||||
Sbjct: 10771013 ggtgcggaaagagctgcaggctgcggtggatcaactacctgag 10770971
Score = 44.1 bits (22), Expect = 0.29
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 477 gaagaagacctcatcatcgagctgcacgctgtcctcgggaacaggt 522
||||| ||| |||||||| |||| |||||| ||||||||||||||
Sbjct: 10770936 gaagaggacgtcatcatcaagctccacgctaccctcgggaacaggt 10770891
>gb|AQ160956.1|AQ160956 nbxb0006A18r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0006A18r, DNA sequence
Length = 630
Score = 44.1 bits (22), Expect = 0.29
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 399 aggtgcggaaagagttgtaggctgaggtggataaactatctgaggccagacctcaagaga 458
||||| || ||||| || ||||| || |||| ||||| |||||||||||| ||||||||
Sbjct: 170 aggtgtggcaagagctgcaggctaagatggacgaactacctgaggccagacatcaagaga 229
Query: 459 gg 460
||
Sbjct: 230 gg 231
>gb|AQ509965.1|AQ509965 nbxb0094H15r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0094H15r, DNA sequence
Length = 592
Score = 44.1 bits (22), Expect = 0.29
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 399 aggtgcggaaagagttgtaggctgaggtggataaactatctgaggccagacctcaagaga 458
||||| || ||||| || ||||| || |||| ||||| |||||||||||| ||||||||
Sbjct: 131 aggtgtggcaagagctgcaggctaagatggacgaactacctgaggccagacatcaagaga 190
Query: 459 gg 460
||
Sbjct: 191 gg 192
>gb|AQ843016.1|AQ843016 nbxb0001P18r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0001P18r, DNA sequence
Length = 327
Score = 44.1 bits (22), Expect = 0.29
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 399 aggtgcggaaagagttgtaggctgaggtggataaactatctgaggccagacctcaagaga 458
||||| || ||||| || ||||| || |||| ||||| |||||||||||| ||||||||
Sbjct: 131 aggtgtggcaagagctgcaggctaagatggacgaactacctgaggccagacatcaagaga 190
Query: 459 gg 460
||
Sbjct: 191 gg 192
>gb|DU133704.1|DU133704 UCDRGT2793_5.1 UCD RGT Rice Insertions Oryza sativa (japonica
cultivar-group) genomic clone RGT2793_5.1, DNA sequence
Length = 586
Score = 44.1 bits (22), Expect = 0.29
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 399 aggtgcggaaagagttgtaggctgaggtggataaactatctgaggccagacctcaagaga 458
||||| || ||||| || ||||| || |||| ||||| |||||||||||| ||||||||
Sbjct: 449 aggtgtggcaagagctgcaggctaagatggacgaactacctgaggccagacatcaagaga 390
Query: 459 gg 460
||
Sbjct: 389 gg 388
>gb|AY873246.1|AY873246 04ET3_013_I_007_019_029C07 Oryza sativa (japonica cultivar-group)
transposon insertional mutants Oryza sativa (japonica
cultivar-group) genomic clone
04ET3_013_I_007_019_029C07, DNA sequence
Length = 409
Score = 44.1 bits (22), Expect = 0.29
Identities = 49/58 (84%)
Strand = Plus / Minus
Query: 517 acaggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaa 574
|||||||||| ||| |||||||||||||| ||| |||| || ||||| ||||||||
Sbjct: 379 acaggtggtcgataatagcagcgcagctgccggggcggacggacaatgacatcaagaa 322
>dbj|AP005012.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0627E03
Length = 159861
Score = 44.1 bits (22), Expect = 0.29
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 399 aggtgcggaaagagttgtaggctgaggtggataaactatctgaggccagacctcaagaga 458
||||| || ||||| || ||||| || |||| ||||| |||||||||||| ||||||||
Sbjct: 40350 aggtgtggcaagagctgcaggctaagatggacgaactacctgaggccagacatcaagaga 40291
Query: 459 gg 460
||
Sbjct: 40290 gg 40289
>gb|AC133450.6| Oryza sativa chromosome 3 BAC OSJNBa0072F13 genomic sequence, complete
sequence
Length = 150743
Score = 44.1 bits (22), Expect = 0.29
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 517 acaggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaa 574
|||||||||| ||| |||||||||||||| ||| |||| || ||||| ||||||||
Sbjct: 30697 acaggtggtcgataatagcagcgcagctgccggggcggacggacaatgacatcaagaa 30754
>gb|AC118285.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1206_C08,
complete sequence
Length = 115026
Score = 44.1 bits (22), Expect = 0.29
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 402 tgcggaaagagttgtaggctgaggtggataaactatctgaggccagacct 451
||||| ||||| || |||||| ||||||| ||||| || |||||||||||
Sbjct: 19340 tgcggcaagagctgcaggctgcggtggatcaactacctcaggccagacct 19389
>gb|AC098833.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1288_A07,
complete sequence
Length = 122120
Score = 44.1 bits (22), Expect = 0.29
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 402 tgcggaaagagttgtaggctgaggtggataaactatctgaggccagacct 451
||||| ||||| || |||||| ||||||| ||||| || |||||||||||
Sbjct: 63039 tgcggcaagagctgcaggctgcggtggatcaactacctcaggccagacct 63088
>gb|AACV01005439.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005439, whole
genome shotgun sequence
Length = 46639
Score = 44.1 bits (22), Expect = 0.29
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 399 aggtgcggaaagagttgtaggctgaggtggataaactatctgaggccagacctcaagaga 458
||||| || ||||| || ||||| || |||| ||||| |||||||||||| ||||||||
Sbjct: 6734 aggtgtggcaagagctgcaggctaagatggacgaactacctgaggccagacatcaagaga 6793
Query: 459 gg 460
||
Sbjct: 6794 gg 6795
>gb|AACV01008001.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg008001, whole
genome shotgun sequence
Length = 108118
Score = 44.1 bits (22), Expect = 0.29
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 517 acaggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaa 574
|||||||||| ||| |||||||||||||| ||| |||| || ||||| ||||||||
Sbjct: 18778 acaggtggtcgataatagcagcgcagctgccggggcggacggacaatgacatcaagaa 18835
>gb|AACV01012646.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg012646, whole
genome shotgun sequence
Length = 33120
Score = 44.1 bits (22), Expect = 0.29
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 402 tgcggaaagagttgtaggctgaggtggataaactatctgaggccagacct 451
||||| ||||| || |||||| ||||||| ||||| || |||||||||||
Sbjct: 30387 tgcggcaagagctgcaggctgcggtggatcaactacctcaggccagacct 30436
>ref|XM_467854.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1134
Score = 44.1 bits (22), Expect = 0.29
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 399 aggtgcggaaagagttgtaggctgaggtggataaactatctgaggccagacctcaagaga 458
||||| || ||||| || ||||| || |||| ||||| |||||||||||| ||||||||
Sbjct: 142 aggtgtggcaagagctgcaggctaagatggacgaactacctgaggccagacatcaagaga 201
Query: 459 gg 460
||
Sbjct: 202 gg 203
>ref|NT_107181.1| Oryza sativa (japonica cultivar-group)
Length = 9248309
Score = 44.1 bits (22), Expect = 0.29
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 399 aggtgcggaaagagttgtaggctgaggtggataaactatctgaggccagacctcaagaga 458
||||| || ||||| || ||||| || |||| ||||| |||||||||||| ||||||||
Sbjct: 6909551 aggtgtggcaagagctgcaggctaagatggacgaactacctgaggccagacatcaagaga 6909492
Query: 459 gg 460
||
Sbjct: 6909491 gg 6909490
Score = 42.1 bits (21), Expect = 1.1
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 531 attgcagcgcagctgccagggaggactgataatgagatcaagaat 575
||||||||| |||||| |||||||| || || ||||||||||||
Sbjct: 62911 attgcagcgaggctgccggggaggacggacaacgagatcaagaat 62867
Score = 40.1 bits (20), Expect = 4.5
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 418 ggctgaggtggataaactatctgaggccagacctcaagag 457
|||||||||||| ||||| ||| |||| |||||||||||
Sbjct: 5724224 ggctgaggtggacgaactacctgcggcccgacctcaagag 5724185
Score = 40.1 bits (20), Expect = 4.5
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1175 tagcagcagtagcagtactg 1194
||||||||||||||||||||
Sbjct: 4034206 tagcagcagtagcagtactg 4034225
>ref|NT_107187.1| Oryza sativa (japonica cultivar-group)
Length = 2541880
Score = 44.1 bits (22), Expect = 0.29
Identities = 49/58 (84%)
Strand = Plus / Minus
Query: 517 acaggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaa 574
|||||||||| ||| |||||||||||||| ||| |||| || ||||| ||||||||
Sbjct: 829360 acaggtggtcgataatagcagcgcagctgccggggcggacggacaatgacatcaagaa 829303
>ref|NT_107219.1| Oryza sativa (japonica cultivar-group)
Length = 612170
Score = 44.1 bits (22), Expect = 0.29
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 402 tgcggaaagagttgtaggctgaggtggataaactatctgaggccagacct 451
||||| ||||| || |||||| ||||||| ||||| || |||||||||||
Sbjct: 425793 tgcggcaagagctgcaggctgcggtggatcaactacctcaggccagacct 425842
>gb|CH401206.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000043 genomic
scaffold, whole genome shotgun sequence
Length = 11965857
Score = 44.1 bits (22), Expect = 0.29
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 402 tgcggaaagagttgtaggctgaggtggataaactatctgaggccagacct 451
||||| ||||| || |||||| ||||||| ||||| || |||||||||||
Sbjct: 9201849 tgcggcaagagctgcaggctgcggtggatcaactacctcaggccagacct 9201898
Score = 42.1 bits (21), Expect = 1.1
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 518 caggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaa 574
||||||||||| || || | ||||||||| |||||||| || || |||||||||||
Sbjct: 3311526 caggtggtctctgatcgccgggcagctgccggggaggacggacaacgagatcaagaa 3311470
>gb|CH401176.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000013 genomic
scaffold, whole genome shotgun sequence
Length = 9810738
Score = 44.1 bits (22), Expect = 0.29
Identities = 49/58 (84%)
Strand = Plus / Minus
Query: 517 acaggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaa 574
|||||||||| ||| |||||||||||||| ||| |||| || ||||| ||||||||
Sbjct: 5289988 acaggtggtcgataatagcagcgcagctgccggggcggacggacaatgacatcaagaa 5289931
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 44.1 bits (22), Expect = 0.29
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 399 aggtgcggaaagagttgtaggctgaggtggataaactatctgaggccagacctcaagaga 458
||||| || ||||| || ||||| || |||| ||||| |||||||||||| ||||||||
Sbjct: 18308168 aggtgtggcaagagctgcaggctaagatggacgaactacctgaggccagacatcaagaga 18308109
Query: 459 gg 460
||
Sbjct: 18308108 gg 18308107
Score = 42.1 bits (21), Expect = 1.1
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 531 attgcagcgcagctgccagggaggactgataatgagatcaagaat 575
||||||||| |||||| |||||||| || || ||||||||||||
Sbjct: 11224277 attgcagcgaggctgccggggaggacggacaacgagatcaagaat 11224233
Score = 40.1 bits (20), Expect = 4.5
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 418 ggctgaggtggataaactatctgaggccagacctcaagag 457
|||||||||||| ||||| ||| |||| |||||||||||
Sbjct: 17056527 ggctgaggtggacgaactacctgcggcccgacctcaagag 17056488
Score = 40.1 bits (20), Expect = 4.5
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1175 tagcagcagtagcagtactg 1194
||||||||||||||||||||
Sbjct: 15381447 tagcagcagtagcagtactg 15381466
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 44.1 bits (22), Expect = 0.29
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 399 aggtgcggaaagagttgtaggctgaggtggataaactatctgaggccagacctcaagaga 458
||||| || ||||| || ||||| || |||| ||||| |||||||||||| ||||||||
Sbjct: 31761232 aggtgtggcaagagctgcaggctaagatggacgaactacctgaggccagacatcaagaga 31761173
Query: 459 gg 460
||
Sbjct: 31761172 gg 31761171
Score = 42.1 bits (21), Expect = 1.1
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 531 attgcagcgcagctgccagggaggactgataatgagatcaagaat 575
||||||||| |||||| |||||||| || || ||||||||||||
Sbjct: 24677341 attgcagcgaggctgccggggaggacggacaacgagatcaagaat 24677297
Score = 40.1 bits (20), Expect = 4.5
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 418 ggctgaggtggataaactatctgaggccagacctcaagag 457
|||||||||||| ||||| ||| |||| |||||||||||
Sbjct: 30509591 ggctgaggtggacgaactacctgcggcccgacctcaagag 30509552
Score = 40.1 bits (20), Expect = 4.5
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1175 tagcagcagtagcagtactg 1194
||||||||||||||||||||
Sbjct: 28834511 tagcagcagtagcagtactg 28834530
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 44.1 bits (22), Expect = 0.29
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 399 aggtgcggaaagagttgtaggctgaggtggataaactatctgaggccagacctcaagaga 458
||||| || ||||| || ||||| || |||| ||||| |||||||||||| ||||||||
Sbjct: 31744552 aggtgtggcaagagctgcaggctaagatggacgaactacctgaggccagacatcaagaga 31744493
Query: 459 gg 460
||
Sbjct: 31744492 gg 31744491
Score = 42.1 bits (21), Expect = 1.1
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 531 attgcagcgcagctgccagggaggactgataatgagatcaagaat 575
||||||||| |||||| |||||||| || || ||||||||||||
Sbjct: 24897912 attgcagcgaggctgccggggaggacggacaacgagatcaagaat 24897868
Score = 40.1 bits (20), Expect = 4.5
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 418 ggctgaggtggataaactatctgaggccagacctcaagag 457
|||||||||||| ||||| ||| |||| |||||||||||
Sbjct: 30559225 ggctgaggtggacgaactacctgcggcccgacctcaagag 30559186
Score = 40.1 bits (20), Expect = 4.5
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1175 tagcagcagtagcagtactg 1194
||||||||||||||||||||
Sbjct: 28869207 tagcagcagtagcagtactg 28869226
>gb|AU082155.1|AU082155 AU082155 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R0628, mRNA sequence
Length = 537
Score = 42.1 bits (21), Expect = 1.1
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 531 attgcagcgcagctgccagggaggactgataatgagatcaagaat 575
||||||||| |||||| |||||||| || || ||||||||||||
Sbjct: 372 attgcagcgaggctgccggggaggacggacaacgagatcaagaat 416
>gb|AU082166.1|AU082166 AU082166 Rice cDNA from young root Oryza sativa (japonica
cultivar-group) cDNA clone R10372, mRNA sequence
Length = 312
Score = 42.1 bits (21), Expect = 1.1
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 518 caggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaa 574
||||||||||| || || | ||||||||| |||||||| || || |||||||||||
Sbjct: 100 caggtggtctctgatcgccgggcagctgccggggaggacggacaacgagatcaagaa 156
>gb|AU183276.1|AU183276 AU183276 Rice cDNA from immature leaf including apical meristem
(under short day condition) Oryza sativa (japonica
cultivar-group) cDNA clone E60862, mRNA sequence
Length = 451
Score = 42.1 bits (21), Expect = 1.1
Identities = 72/89 (80%)
Strand = Plus / Plus
Query: 486 ctcatcatcgagctgcacgctgtcctcgggaacaggtggtctcaaattgcagcgcagctg 545
||||||||| |||| ||||| | ||||| |||| |||||| ||||| | |||||||
Sbjct: 299 ctcatcatcaagctccacgcccttctcggcaacaagtggtcgttgattgcggggcagctg 358
Query: 546 ccagggaggactgataatgagatcaagaa 574
|| |||||||| || || |||||||||||
Sbjct: 359 ccggggaggacggacaacgagatcaagaa 387
>gb|CB653197.1|CB653197 OSJNEc04A04.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc04A04 5', mRNA sequence
Length = 610
Score = 42.1 bits (21), Expect = 1.1
Identities = 81/101 (80%)
Strand = Plus / Plus
Query: 474 gacgaagaagacctcatcatcgagctgcacgctgtcctcgggaacaggtggtctcaaatt 533
||||| || |||||||||||| |||| ||| ||||||| |||| |||||||| ||
Sbjct: 248 gacgaggacgacctcatcatcaagctccacagcctcctcggcaacaagtggtctctgatc 307
Query: 534 gcagcgcagctgccagggaggactgataatgagatcaagaa 574
|| ||| |||||| |||||||| || || |||||||||||
Sbjct: 308 gcggcgaggctgccggggaggacggacaacgagatcaagaa 348
>dbj|AP004813.1| Oryza sativa (japonica cultivar-group) chromosome 6 clone P0459E03, ***
SEQUENCING IN PROGRESS ***
Length = 159290
Score = 42.1 bits (21), Expect = 1.1
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 332 catgaatcacataacaaagca 352
|||||||||||||||||||||
Sbjct: 94630 catgaatcacataacaaagca 94650
>dbj|AP005070.1| Oryza sativa (japonica cultivar-group) chromosome 2 clone P0656G12, ***
SEQUENCING IN PROGRESS ***
Length = 154494
Score = 42.1 bits (21), Expect = 1.1
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 531 attgcagcgcagctgccagggaggactgataatgagatcaagaat 575
||||||||| |||||| |||||||| || || ||||||||||||
Sbjct: 35424 attgcagcgaggctgccggggaggacggacaacgagatcaagaat 35380
>dbj|AK060684.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-F12, full
insert sequence
Length = 1037
Score = 42.1 bits (21), Expect = 1.1
Identities = 72/89 (80%)
Strand = Plus / Plus
Query: 486 ctcatcatcgagctgcacgctgtcctcgggaacaggtggtctcaaattgcagcgcagctg 545
||||||||| |||| ||||| | ||||| |||| |||||| ||||| | |||||||
Sbjct: 325 ctcatcatcaagctccacgcccttctcggcaacaagtggtcgttgattgcggggcagctg 384
Query: 546 ccagggaggactgataatgagatcaagaa 574
|| |||||||| || || |||||||||||
Sbjct: 385 ccggggaggacggacaacgagatcaagaa 413
>dbj|AK112018.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-C02, full
insert sequence
Length = 1367
Score = 42.1 bits (21), Expect = 1.1
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 534 gcagcgcagctgccagggaggactgataatgagatcaagaa 574
|||||||||||||| ||| |||| || ||||| ||||||||
Sbjct: 382 gcagcgcagctgccggggcggacggacaatgacatcaagaa 422
>dbj|AK112056.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-110-C03, full
insert sequence
Length = 1038
Score = 42.1 bits (21), Expect = 1.1
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 531 attgcagcgcagctgccagggaggactgataatgagatcaagaat 575
||||||||| |||||| |||||||| || || ||||||||||||
Sbjct: 396 attgcagcgaggctgccggggaggacggacaacgagatcaagaat 440
>dbj|AP006523.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:B1215B07
Length = 165957
Score = 42.1 bits (21), Expect = 1.1
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 531 attgcagcgcagctgccagggaggactgataatgagatcaagaat 575
||||||||| |||||| |||||||| || || ||||||||||||
Sbjct: 59195 attgcagcgaggctgccggggaggacggacaacgagatcaagaat 59151
>ref|NT_107235.1| Oryza sativa (japonica cultivar-group)
Length = 369247
Score = 42.1 bits (21), Expect = 1.1
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 332 catgaatcacataacaaagca 352
|||||||||||||||||||||
Sbjct: 289421 catgaatcacataacaaagca 289441
>dbj|AP006616.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:B1206D04
Length = 130176
Score = 42.1 bits (21), Expect = 1.1
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 332 catgaatcacataacaaagca 352
|||||||||||||||||||||
Sbjct: 54716 catgaatcacataacaaagca 54736
>gb|AACV01004944.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg004944, whole
genome shotgun sequence
Length = 38231
Score = 42.1 bits (21), Expect = 1.1
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 531 attgcagcgcagctgccagggaggactgataatgagatcaagaat 575
||||||||| |||||| |||||||| || || ||||||||||||
Sbjct: 6514 attgcagcgaggctgccggggaggacggacaacgagatcaagaat 6558
>gb|AACV01012232.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg012232, whole
genome shotgun sequence
Length = 74847
Score = 42.1 bits (21), Expect = 1.1
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 518 caggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaa 574
||||||||||| || || | ||||||||| |||||||| || || |||||||||||
Sbjct: 49485 caggtggtctctgatcgccgggcagctgccggggaggacggacaacgagatcaagaa 49429
>gb|AACV01014981.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014981, whole
genome shotgun sequence
Length = 61854
Score = 42.1 bits (21), Expect = 1.1
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 332 catgaatcacataacaaagca 352
|||||||||||||||||||||
Sbjct: 59294 catgaatcacataacaaagca 59314
>ref|NM_190827.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 864
Score = 42.1 bits (21), Expect = 1.1
Identities = 72/89 (80%)
Strand = Plus / Plus
Query: 486 ctcatcatcgagctgcacgctgtcctcgggaacaggtggtctcaaattgcagcgcagctg 545
||||||||| |||| ||||| | ||||| |||| |||||| ||||| | |||||||
Sbjct: 229 ctcatcatcaagctccacgcccttctcggcaacaagtggtcgttgattgcggggcagctg 288
Query: 546 ccagggaggactgataatgagatcaagaa 574
|| |||||||| || || |||||||||||
Sbjct: 289 ccggggaggacggacaacgagatcaagaa 317
>ref|XM_466825.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1038
Score = 42.1 bits (21), Expect = 1.1
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 531 attgcagcgcagctgccagggaggactgataatgagatcaagaat 575
||||||||| |||||| |||||||| || || ||||||||||||
Sbjct: 396 attgcagcgaggctgccggggaggacggacaacgagatcaagaat 440
>ref|XM_483665.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 732
Score = 42.1 bits (21), Expect = 1.1
Identities = 81/101 (80%)
Strand = Plus / Plus
Query: 474 gacgaagaagacctcatcatcgagctgcacgctgtcctcgggaacaggtggtctcaaatt 533
||||| || |||||||||||| |||| ||| ||||||| |||| |||||||| ||
Sbjct: 217 gacgaggacgacctcatcatcaagctccacagcctcctcggcaacaagtggtctctgatc 276
Query: 534 gcagcgcagctgccagggaggactgataatgagatcaagaa 574
|| ||| |||||| |||||||| || || |||||||||||
Sbjct: 277 gcggcgaggctgccggggaggacggacaacgagatcaagaa 317
>ref|NT_107212.1| Oryza sativa (japonica cultivar-group)
Length = 2712182
Score = 42.1 bits (21), Expect = 1.1
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 518 caggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaa 574
||||||||||| || || | ||||||||| |||||||| || || |||||||||||
Sbjct: 2261205 caggtggtctctgatcgccgggcagctgccggggaggacggacaacgagatcaagaa 2261149
>gb|AC130600.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone
OSJNBb0048I21, complete sequence
Length = 137650
Score = 42.1 bits (21), Expect = 1.1
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 518 caggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaa 574
||||||||||| || || | ||||||||| |||||||| || || |||||||||||
Sbjct: 82619 caggtggtctctgatcgccgggcagctgccggggaggacggacaacgagatcaagaa 82563
>gb|CH401216.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000053 genomic
scaffold, whole genome shotgun sequence
Length = 12033173
Score = 42.1 bits (21), Expect = 1.1
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 332 catgaatcacataacaaagca 352
|||||||||||||||||||||
Sbjct: 11974380 catgaatcacataacaaagca 11974400
>gb|C73695.1|C73695 C73695 Rice panicle (longer than 10cm) Oryza sativa (japonica
cultivar-group) cDNA clone E20178_2A, mRNA sequence
Length = 427
Score = 40.1 bits (20), Expect = 4.5
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 539 gcagctgccagggaggactgataatgagatcaagaa 574
||||||||| |||||||| || || |||||||||||
Sbjct: 348 gcagctgccggggaggacggacaacgagatcaagaa 383
>gb|C74411.2|C74411 C74411 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E31078, mRNA sequence
Length = 413
Score = 40.1 bits (20), Expect = 4.5
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 418 ggctgaggtggataaactatctgaggccagacctcaagag 457
|||||||||||| ||||| ||| |||| |||||||||||
Sbjct: 228 ggctgaggtggacgaactacctgcggcccgacctcaagag 267
>dbj|AP003922.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0648C09
Length = 107522
Score = 40.1 bits (20), Expect = 4.5
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 539 gcagctgccagggaggactgataatgagatcaagaa 574
||||||||| |||||||| || || |||||||||||
Sbjct: 22248 gcagctgccggggaggacggacaacgagatcaagaa 22283
>dbj|AK108709.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-150-A10, full
insert sequence
Length = 1031
Score = 40.1 bits (20), Expect = 4.5
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 418 ggctgaggtggataaactatctgaggccagacctcaagag 457
|||||||||||| ||||| ||| |||| |||||||||||
Sbjct: 247 ggctgaggtggacgaactacctgcggcccgacctcaagag 286
>gb|AY459335.1| Oryza sativa (japonica cultivar-group) clone CL026180.5 R2R3-MYB gene
region
Length = 24910
Score = 40.1 bits (20), Expect = 4.5
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 539 gcagctgccagggaggactgataatgagatcaagaa 574
||||||||| |||||||| || || |||||||||||
Sbjct: 20936 gcagctgccggggaggacggacaacgagatcaagaa 20971
>dbj|AP005319.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0643A10
Length = 187931
Score = 40.1 bits (20), Expect = 4.5
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 418 ggctgaggtggataaactatctgaggccagacctcaagag 457
|||||||||||| ||||| ||| |||| |||||||||||
Sbjct: 71233 ggctgaggtggacgaactacctgcggcccgacctcaagag 71194
>dbj|AP003022.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0681B11
Length = 144091
Score = 40.1 bits (20), Expect = 4.5
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1768 tcctttcctttctcttgaaa 1787
||||||||||||||||||||
Sbjct: 14666 tcctttcctttctcttgaaa 14647
>gb|AACV01001778.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg001778, whole
genome shotgun sequence
Length = 74791
Score = 40.1 bits (20), Expect = 4.5
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1768 tcctttcctttctcttgaaa 1787
||||||||||||||||||||
Sbjct: 57503 tcctttcctttctcttgaaa 57522
>gb|AACV01002776.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002776, whole
genome shotgun sequence
Length = 36030
Score = 40.1 bits (20), Expect = 4.5
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 539 gcagctgccagggaggactgataatgagatcaagaa 574
||||||||| |||||||| || || |||||||||||
Sbjct: 1537 gcagctgccggggaggacggacaacgagatcaagaa 1572
>gb|AACV01005240.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005240, whole
genome shotgun sequence
Length = 17700
Score = 40.1 bits (20), Expect = 4.5
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1175 tagcagcagtagcagtactg 1194
||||||||||||||||||||
Sbjct: 7404 tagcagcagtagcagtactg 7423
>gb|AACV01005346.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005346, whole
genome shotgun sequence
Length = 61964
Score = 40.1 bits (20), Expect = 4.5
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 418 ggctgaggtggataaactatctgaggccagacctcaagag 457
|||||||||||| ||||| ||| |||| |||||||||||
Sbjct: 38651 ggctgaggtggacgaactacctgcggcccgacctcaagag 38690
>ref|XM_467636.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1031
Score = 40.1 bits (20), Expect = 4.5
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 418 ggctgaggtggataaactatctgaggccagacctcaagag 457
|||||||||||| ||||| ||| |||| |||||||||||
Sbjct: 247 ggctgaggtggacgaactacctgcggcccgacctcaagag 286
>dbj|AP003994.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1111_E07
Length = 123613
Score = 40.1 bits (20), Expect = 4.5
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1175 tagcagcagtagcagtactg 1194
||||||||||||||||||||
Sbjct: 61899 tagcagcagtagcagtactg 61918
>dbj|AP004669.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0491F11
Length = 152274
Score = 40.1 bits (20), Expect = 4.5
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 539 gcagctgccagggaggactgataatgagatcaagaa 574
||||||||| |||||||| || || |||||||||||
Sbjct: 147328 gcagctgccggggaggacggacaacgagatcaagaa 147363
>dbj|AP003297.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0698A10
Length = 137348
Score = 40.1 bits (20), Expect = 4.5
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 539 gcagctgccagggaggactgataatgagatcaagaa 574
||||||||| |||||||| || || |||||||||||
Sbjct: 6916 gcagctgccggggaggacggacaacgagatcaagaa 6951
>dbj|AP003330.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:B1085F01
Length = 163671
Score = 40.1 bits (20), Expect = 4.5
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1768 tcctttcctttctcttgaaa 1787
||||||||||||||||||||
Sbjct: 111785 tcctttcctttctcttgaaa 111766
Database: Oryza_nucl_with_EST.fasta
Posted date: May 2, 2006 3:04 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,091,409
Number of Sequences: 438736
Number of extensions: 3091409
Number of successful extensions: 20068
Number of sequences better than 10.0: 173
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 16874
Number of HSP's gapped (non-prelim): 3118
length of query: 1992
length of database: 2,800,419,916
effective HSP length: 22
effective length of query: 1970
effective length of database: 2,790,767,724
effective search space: 5497812416280
effective search space used: 5497812416280
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)