BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAR2a06.yg.3.1
(612 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK070116.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.006
ref|XM_465466.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.006
dbj|AP005650.3| Oryza sativa (japonica cultivar-group) geno... 44 0.087
gb|AACV01004216.1| Oryza sativa (japonica cultivar-group) c... 44 0.087
ref|NT_107179.1| Oryza sativa (japonica cultivar-group) 44 0.087
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.087
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.087
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 44 0.087
gb|AC135907.1| Genomic sequence for Oryza sativa, Nipponbar... 40 1.4
gb|AACV01006687.1| Oryza sativa (japonica cultivar-group) c... 40 1.4
gb|AACV01025830.1| Oryza sativa (japonica cultivar-group) C... 40 1.4
gb|AACV01028852.1| Oryza sativa (japonica cultivar-group) C... 40 1.4
gb|AACV01030174.1| Oryza sativa (japonica cultivar-group) C... 40 1.4
ref|NT_079854.2| Oryza sativa (japonica cultivar-group) 40 1.4
gb|CH401174.1| Oryza sativa (japonica cultivar-group) chrom... 40 1.4
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 40 1.4
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 40 1.4
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 40 1.4
dbj|AP003504.1| Oryza sativa (japonica cultivar-group) geno... 38 5.4
gb|AACV01001758.1| Oryza sativa (japonica cultivar-group) c... 38 5.4
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 38 5.4
ref|NT_079926.2| Oryza sativa (japonica cultivar-group) 38 5.4
gb|CH401166.1| Oryza sativa (japonica cultivar-group) chrom... 38 5.4
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 38 5.4
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 38 5.4
>dbj|AK070116.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023043P03, full
insert sequence
Length = 1924
Score = 48.1 bits (24), Expect = 0.006
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 254 tccatcatcagcaagagctgaagatcctgacaagatggtgggaggatatgca 305
|||||||||||||||||||||| || | ||||| |||||| ||||| ||||
Sbjct: 863 tccatcatcagcaagagctgaaaataattacaaggtggtggaaggatctgca 914
>ref|XM_465466.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1925
Score = 48.1 bits (24), Expect = 0.006
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 254 tccatcatcagcaagagctgaagatcctgacaagatggtgggaggatatgca 305
|||||||||||||||||||||| || | ||||| |||||| ||||| ||||
Sbjct: 864 tccatcatcagcaagagctgaaaataattacaaggtggtggaaggatctgca 915
>dbj|AP005650.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OSJNBa0078K05
Length = 162901
Score = 44.1 bits (22), Expect = 0.087
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 254 tccatcatcagcaagagctgaa 275
||||||||||||||||||||||
Sbjct: 52448 tccatcatcagcaagagctgaa 52427
>gb|AACV01004216.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg004216, whole
genome shotgun sequence
Length = 38097
Score = 44.1 bits (22), Expect = 0.087
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 254 tccatcatcagcaagagctgaa 275
||||||||||||||||||||||
Sbjct: 32173 tccatcatcagcaagagctgaa 32194
>ref|NT_107179.1| Oryza sativa (japonica cultivar-group)
Length = 4877845
Score = 44.1 bits (22), Expect = 0.087
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 254 tccatcatcagcaagagctgaa 275
||||||||||||||||||||||
Sbjct: 1443853 tccatcatcagcaagagctgaa 1443832
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 44.1 bits (22), Expect = 0.087
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 254 tccatcatcagcaagagctgaa 275
||||||||||||||||||||||
Sbjct: 1565888 tccatcatcagcaagagctgaa 1565867
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 44.1 bits (22), Expect = 0.087
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 254 tccatcatcagcaagagctgaa 275
||||||||||||||||||||||
Sbjct: 15018952 tccatcatcagcaagagctgaa 15018931
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 44.1 bits (22), Expect = 0.087
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 254 tccatcatcagcaagagctgaa 275
||||||||||||||||||||||
Sbjct: 15381666 tccatcatcagcaagagctgaa 15381645
>gb|AC135907.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1057D12,
from chromosome 3, complete sequence
Length = 161676
Score = 40.1 bits (20), Expect = 1.4
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 30 actcgatgaagccatcgcgttcgcgaga 57
||||||||| |||||||||||| |||||
Sbjct: 103774 actcgatgacgccatcgcgttctcgaga 103801
>gb|AACV01006687.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006687, whole
genome shotgun sequence
Length = 53165
Score = 40.1 bits (20), Expect = 1.4
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 30 actcgatgaagccatcgcgttcgcgaga 57
||||||||| |||||||||||| |||||
Sbjct: 16029 actcgatgacgccatcgcgttctcgaga 16056
>gb|AACV01025830.1| Oryza sativa (japonica cultivar-group) Ctg025830, whole genome
shotgun sequence
Length = 26665
Score = 40.1 bits (20), Expect = 1.4
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 246 tctgcagctccatcatcagc 265
||||||||||||||||||||
Sbjct: 4229 tctgcagctccatcatcagc 4210
>gb|AACV01028852.1| Oryza sativa (japonica cultivar-group) Ctg028852, whole genome
shotgun sequence
Length = 5068
Score = 40.1 bits (20), Expect = 1.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 246 tctgcagctccatcatcagc 265
||||||||||||||||||||
Sbjct: 4254 tctgcagctccatcatcagc 4273
>gb|AACV01030174.1| Oryza sativa (japonica cultivar-group) Ctg030174, whole genome
shotgun sequence
Length = 3802
Score = 40.1 bits (20), Expect = 1.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 246 tctgcagctccatcatcagc 265
||||||||||||||||||||
Sbjct: 629 tctgcagctccatcatcagc 648
>ref|NT_079854.2| Oryza sativa (japonica cultivar-group)
Length = 2592259
Score = 40.1 bits (20), Expect = 1.4
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 30 actcgatgaagccatcgcgttcgcgaga 57
||||||||| |||||||||||| |||||
Sbjct: 298380 actcgatgacgccatcgcgttctcgaga 298353
>gb|CH401174.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000011
genomic scaffold, whole genome shotgun sequence
Length = 12704415
Score = 40.1 bits (20), Expect = 1.4
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 30 actcgatgaagccatcgcgttcgcgaga 57
||||||||| |||||||||||| |||||
Sbjct: 510695 actcgatgacgccatcgcgttctcgaga 510668
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 40.1 bits (20), Expect = 1.4
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 30 actcgatgaagccatcgcgttcgcgaga 57
||||||||| |||||||||||| |||||
Sbjct: 14561402 actcgatgacgccatcgcgttctcgaga 14561375
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 40.1 bits (20), Expect = 1.4
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 30 actcgatgaagccatcgcgttcgcgaga 57
||||||||| |||||||||||| |||||
Sbjct: 13902683 actcgatgacgccatcgcgttctcgaga 13902656
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 40.1 bits (20), Expect = 1.4
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 30 actcgatgaagccatcgcgttcgcgaga 57
||||||||| |||||||||||| |||||
Sbjct: 13907708 actcgatgacgccatcgcgttctcgaga 13907681
>dbj|AP003504.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0025A05
Length = 154298
Score = 38.2 bits (19), Expect = 5.4
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 488 tcactaattgcatcgaaag 506
|||||||||||||||||||
Sbjct: 52036 tcactaattgcatcgaaag 52054
>gb|AACV01001758.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg001758, whole
genome shotgun sequence
Length = 23249
Score = 38.2 bits (19), Expect = 5.4
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 488 tcactaattgcatcgaaag 506
|||||||||||||||||||
Sbjct: 11378 tcactaattgcatcgaaag 11360
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 38.2 bits (19), Expect = 5.4
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 488 tcactaattgcatcgaaag 506
|||||||||||||||||||
Sbjct: 23567448 tcactaattgcatcgaaag 23567466
>ref|NT_079926.2| Oryza sativa (japonica cultivar-group)
Length = 8469246
Score = 38.2 bits (19), Expect = 5.4
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 488 tcactaattgcatcgaaag 506
|||||||||||||||||||
Sbjct: 6485680 tcactaattgcatcgaaag 6485698
>gb|CH401166.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000003 genomic
scaffold, whole genome shotgun sequence
Length = 8539496
Score = 38.2 bits (19), Expect = 5.4
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 488 tcactaattgcatcgaaag 506
|||||||||||||||||||
Sbjct: 6418806 tcactaattgcatcgaaag 6418824
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 38.2 bits (19), Expect = 5.4
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 488 tcactaattgcatcgaaag 506
|||||||||||||||||||
Sbjct: 23043929 tcactaattgcatcgaaag 23043947
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 38.2 bits (19), Expect = 5.4
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 488 tcactaattgcatcgaaag 506
|||||||||||||||||||
Sbjct: 23488731 tcactaattgcatcgaaag 23488749
Database: Oryza_nucl_with_EST.fasta
Posted date: May 2, 2006 3:04 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 654,772
Number of Sequences: 438736
Number of extensions: 654772
Number of successful extensions: 10927
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10642
Number of HSP's gapped (non-prelim): 285
length of query: 612
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 591
effective length of database: 2,791,206,460
effective search space: 1649603017860
effective search space used: 1649603017860
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)