BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAI15h08.yg.2.1
(557 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_469566.1| Oryza sativa (japonica cultivar-group), mRNA 363 7e-098
gb|AQ160958.1|AQ160958 nbxb0006A20r CUGI Rice BAC Library O... 198 2e-048
gb|AQ259758.1|AQ259758 nbxb0023D16r CUGI Rice BAC Library O... 198 2e-048
gb|AC091532.13| Oryza sativa chromosome 3 BAC OSJNBa0078A17... 198 2e-048
gb|AACV01007799.1| Oryza sativa (japonica cultivar-group) c... 198 2e-048
ref|NT_079916.2| Oryza sativa (japonica cultivar-group) 198 2e-048
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 198 2e-048
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 198 2e-048
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 198 2e-048
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 198 2e-048
gb|AQ272632.1|AQ272632 nbxb0028G04r CUGI Rice BAC Library O... 92 4e-016
ref|XM_467688.1| Oryza sativa (japonica cultivar-group), mRNA 64 9e-008
dbj|AP005112.3| Oryza sativa (japonica cultivar-group) geno... 62 3e-007
gb|AACV01005368.1| Oryza sativa (japonica cultivar-group) c... 62 3e-007
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 62 3e-007
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 62 3e-007
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 62 3e-007
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 62 3e-007
>ref|XM_469566.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 3042
Score = 363 bits (183), Expect = 7e-098
Identities = 433/518 (83%)
Strand = Plus / Minus
Query: 3 cccacaagcatacatatgacaaagacaccagatggggtagaaattgcagaccatgggaca 62
||||| ||||||||||| |||||||| || ||||| |||| |||||||||||||| |||
Sbjct: 1046 cccaccagcatacatataacaaagacccctgatggtgtagtaattgcagaccatgaaaca 987
Query: 63 tgaggcttgtttctgtatctgcaaaccatatgatgctttctgaatggatcaccaaaatct 122
||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 986 tgaagcttgtttctgtatctgcaaaccatctgatgctttctcaatggatcaccaaaatcc 927
Query: 123 agcatgcagatgtgcgatgatgaggggttgccaagaggaacttctgatccatacatgaca 182
| | | || |||| |||| |||||| | ||||||||||| || ||||||||||| |||
Sbjct: 926 aacgtataggtgtgtgatggtgagggaataccaagaggaacctcagatccatacatcaca 867
Query: 183 agagggttcgaaatgtttgtgacatcataaacatttaccaccaattcctgattgccagct 242
|||||||| || ||||||||||||||||||||| |||||||||||||| || ||||||
Sbjct: 866 agagggtttgagtggtttgtgacatcataaacattgaccaccaattcctggttaccagct 807
Query: 243 agctgcctcaacaaattttccactaatgattctacatcaaatgctcccccaaggtatcct 302
| ||| |||||||||||||| |||| ||| || |||||||||||||| ||||||||||||
Sbjct: 806 aactgtctcaacaaattttctactagtgactccacatcaaatgctcctccaaggtatcct 747
Query: 303 gcggtggcagcaacacgatcctcctccttggcatcagaaggaagatccgcatgatagaca 362
|| || |||||||||||||||||| || || |||| || ||||| | | ||||||
Sbjct: 746 gcagtagcagcaacacgatcctccaccgcggtatcatttgggagatcgacgaggtagaca 687
Query: 363 ggaaaagtcaatacgacacccaggtgattcgacatgagccggaatggtcgagtgagaact 422
||||| ||||| || ||||||| |||||||||||| |||||||| || | ||||| ||
Sbjct: 686 ggaaacgtcaagacaacacccaagtgattcgacatcagccggaacggcctcgtgaggacg 627
Query: 423 gccttccccgatgctcttgacctcaaaatattctcacggtcctcctcgccnnacatcatg 482
|||||||| | || || | |||||| || ||||| | |||||||||||| |||| | |
Sbjct: 626 gccttccctgtcgccctcgccctcaagatgttctccctgtcctcctcgccggacatgacg 567
Query: 483 tcgagcccctcgatgtannngacggtctcctgcgagta 520
||||| ||||||||||| || ||||||||| |||||
Sbjct: 566 tcgaggccctcgatgtaggagatggtctcctgggagta 529
>gb|AQ160958.1|AQ160958 nbxb0006A20r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0006A20r, DNA sequence
Length = 636
Score = 198 bits (100), Expect = 2e-048
Identities = 190/220 (86%)
Strand = Plus / Plus
Query: 81 ctgcaaaccatatgatgctttctgaatggatcaccaaaatctagcatgcagatgtgcgat 140
||||||||||| ||||||||||| ||||||||||||||||| | | | || |||| |||
Sbjct: 144 ctgcaaaccatctgatgctttctcaatggatcaccaaaatccaacgtataggtgtgtgat 203
Query: 141 gatgaggggttgccaagaggaacttctgatccatacatgacaagagggttcgaaatgttt 200
| |||||| | ||||||||||| || ||||||||||| ||||||||||| || ||||
Sbjct: 204 ggtgagggaataccaagaggaacctcagatccatacatcacaagagggtttgagtggttt 263
Query: 201 gtgacatcataaacatttaccaccaattcctgattgccagctagctgcctcaacaaattt 260
||||||||||||||||| |||||||||||||| || ||||||| ||| ||||||||||||
Sbjct: 264 gtgacatcataaacattgaccaccaattcctggttaccagctaactgtctcaacaaattt 323
Query: 261 tccactaatgattctacatcaaatgctcccccaaggtatc 300
|| |||| ||| || |||||||||||||| ||||||||||
Sbjct: 324 tctactagtgactccacatcaaatgctcctccaaggtatc 363
>gb|AQ259758.1|AQ259758 nbxb0023D16r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0023D16r, DNA sequence
Length = 713
Score = 198 bits (100), Expect = 2e-048
Identities = 190/220 (86%)
Strand = Plus / Plus
Query: 81 ctgcaaaccatatgatgctttctgaatggatcaccaaaatctagcatgcagatgtgcgat 140
||||||||||| ||||||||||| ||||||||||||||||| | | | || |||| |||
Sbjct: 100 ctgcaaaccatctgatgctttctcaatggatcaccaaaatccaacgtataggtgtgtgat 159
Query: 141 gatgaggggttgccaagaggaacttctgatccatacatgacaagagggttcgaaatgttt 200
| |||||| | ||||||||||| || ||||||||||| ||||||||||| || ||||
Sbjct: 160 ggtgagggaataccaagaggaacctcagatccatacatcacaagagggtttgagtggttt 219
Query: 201 gtgacatcataaacatttaccaccaattcctgattgccagctagctgcctcaacaaattt 260
||||||||||||||||| |||||||||||||| || ||||||| ||| ||||||||||||
Sbjct: 220 gtgacatcataaacattgaccaccaattcctggttaccagctaactgtctcaacaaattt 279
Query: 261 tccactaatgattctacatcaaatgctcccccaaggtatc 300
|| |||| ||| || |||||||||||||| ||||||||||
Sbjct: 280 tctactagtgactccacatcaaatgctcctccaaggtatc 319
>gb|AC091532.13| Oryza sativa chromosome 3 BAC OSJNBa0078A17 genomic sequence, complete
sequence
Length = 147344
Score = 198 bits (100), Expect = 2e-048
Identities = 190/220 (86%)
Strand = Plus / Minus
Query: 81 ctgcaaaccatatgatgctttctgaatggatcaccaaaatctagcatgcagatgtgcgat 140
||||||||||| ||||||||||| ||||||||||||||||| | | | || |||| |||
Sbjct: 66308 ctgcaaaccatctgatgctttctcaatggatcaccaaaatccaacgtataggtgtgtgat 66249
Query: 141 gatgaggggttgccaagaggaacttctgatccatacatgacaagagggttcgaaatgttt 200
| |||||| | ||||||||||| || ||||||||||| ||||||||||| || ||||
Sbjct: 66248 ggtgagggaataccaagaggaacctcagatccatacatcacaagagggtttgagtggttt 66189
Query: 201 gtgacatcataaacatttaccaccaattcctgattgccagctagctgcctcaacaaattt 260
||||||||||||||||| |||||||||||||| || ||||||| ||| ||||||||||||
Sbjct: 66188 gtgacatcataaacattgaccaccaattcctggttaccagctaactgtctcaacaaattt 66129
Query: 261 tccactaatgattctacatcaaatgctcccccaaggtatc 300
|| |||| ||| || |||||||||||||| ||||||||||
Sbjct: 66128 tctactagtgactccacatcaaatgctcctccaaggtatc 66089
Score = 91.7 bits (46), Expect = 4e-016
Identities = 73/82 (89%)
Strand = Plus / Minus
Query: 3 cccacaagcatacatatgacaaagacaccagatggggtagaaattgcagaccatgggaca 62
||||| ||||||||||| |||||||| || ||||| |||| |||||||||||||| |||
Sbjct: 66477 cccaccagcatacatataacaaagacccctgatggtgtagtaattgcagaccatgaaaca 66418
Query: 63 tgaggcttgtttctgtatctgc 84
||| ||||||||||||||||||
Sbjct: 66417 tgaagcttgtttctgtatctgc 66396
Score = 60.0 bits (30), Expect = 1e-006
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 357 tagacaggaaaagtcaatacgacacccaggtgattcgacatgagccggaa 406
||||||||||| ||||| || ||||||| |||||||||||| ||||||||
Sbjct: 65731 tagacaggaaacgtcaagacaacacccaagtgattcgacatcagccggaa 65682
>gb|AACV01007799.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg007799, whole
genome shotgun sequence
Length = 57179
Score = 198 bits (100), Expect = 2e-048
Identities = 190/220 (86%)
Strand = Plus / Minus
Query: 81 ctgcaaaccatatgatgctttctgaatggatcaccaaaatctagcatgcagatgtgcgat 140
||||||||||| ||||||||||| ||||||||||||||||| | | | || |||| |||
Sbjct: 51408 ctgcaaaccatctgatgctttctcaatggatcaccaaaatccaacgtataggtgtgtgat 51349
Query: 141 gatgaggggttgccaagaggaacttctgatccatacatgacaagagggttcgaaatgttt 200
| |||||| | ||||||||||| || ||||||||||| ||||||||||| || ||||
Sbjct: 51348 ggtgagggaataccaagaggaacctcagatccatacatcacaagagggtttgagtggttt 51289
Query: 201 gtgacatcataaacatttaccaccaattcctgattgccagctagctgcctcaacaaattt 260
||||||||||||||||| |||||||||||||| || ||||||| ||| ||||||||||||
Sbjct: 51288 gtgacatcataaacattgaccaccaattcctggttaccagctaactgtctcaacaaattt 51229
Query: 261 tccactaatgattctacatcaaatgctcccccaaggtatc 300
|| |||| ||| || |||||||||||||| ||||||||||
Sbjct: 51228 tctactagtgactccacatcaaatgctcctccaaggtatc 51189
Score = 91.7 bits (46), Expect = 4e-016
Identities = 73/82 (89%)
Strand = Plus / Minus
Query: 3 cccacaagcatacatatgacaaagacaccagatggggtagaaattgcagaccatgggaca 62
||||| ||||||||||| |||||||| || ||||| |||| |||||||||||||| |||
Sbjct: 51577 cccaccagcatacatataacaaagacccctgatggtgtagtaattgcagaccatgaaaca 51518
Query: 63 tgaggcttgtttctgtatctgc 84
||| ||||||||||||||||||
Sbjct: 51517 tgaagcttgtttctgtatctgc 51496
Score = 60.0 bits (30), Expect = 1e-006
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 357 tagacaggaaaagtcaatacgacacccaggtgattcgacatgagccggaa 406
||||||||||| ||||| || ||||||| |||||||||||| ||||||||
Sbjct: 50831 tagacaggaaacgtcaagacaacacccaagtgattcgacatcagccggaa 50782
>ref|NT_079916.2| Oryza sativa (japonica cultivar-group)
Length = 3914802
Score = 198 bits (100), Expect = 2e-048
Identities = 190/220 (86%)
Strand = Plus / Minus
Query: 81 ctgcaaaccatatgatgctttctgaatggatcaccaaaatctagcatgcagatgtgcgat 140
||||||||||| ||||||||||| ||||||||||||||||| | | | || |||| |||
Sbjct: 2064394 ctgcaaaccatctgatgctttctcaatggatcaccaaaatccaacgtataggtgtgtgat 2064335
Query: 141 gatgaggggttgccaagaggaacttctgatccatacatgacaagagggttcgaaatgttt 200
| |||||| | ||||||||||| || ||||||||||| ||||||||||| || ||||
Sbjct: 2064334 ggtgagggaataccaagaggaacctcagatccatacatcacaagagggtttgagtggttt 2064275
Query: 201 gtgacatcataaacatttaccaccaattcctgattgccagctagctgcctcaacaaattt 260
||||||||||||||||| |||||||||||||| || ||||||| ||| ||||||||||||
Sbjct: 2064274 gtgacatcataaacattgaccaccaattcctggttaccagctaactgtctcaacaaattt 2064215
Query: 261 tccactaatgattctacatcaaatgctcccccaaggtatc 300
|| |||| ||| || |||||||||||||| ||||||||||
Sbjct: 2064214 tctactagtgactccacatcaaatgctcctccaaggtatc 2064175
Score = 91.7 bits (46), Expect = 4e-016
Identities = 73/82 (89%)
Strand = Plus / Minus
Query: 3 cccacaagcatacatatgacaaagacaccagatggggtagaaattgcagaccatgggaca 62
||||| ||||||||||| |||||||| || ||||| |||| |||||||||||||| |||
Sbjct: 2064563 cccaccagcatacatataacaaagacccctgatggtgtagtaattgcagaccatgaaaca 2064504
Query: 63 tgaggcttgtttctgtatctgc 84
||| ||||||||||||||||||
Sbjct: 2064503 tgaagcttgtttctgtatctgc 2064482
Score = 60.0 bits (30), Expect = 1e-006
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 357 tagacaggaaaagtcaatacgacacccaggtgattcgacatgagccggaa 406
||||||||||| ||||| || ||||||| |||||||||||| ||||||||
Sbjct: 2063817 tagacaggaaacgtcaagacaacacccaagtgattcgacatcagccggaa 2063768
>gb|CH401176.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000013 genomic
scaffold, whole genome shotgun sequence
Length = 9810738
Score = 198 bits (100), Expect = 2e-048
Identities = 190/220 (86%)
Strand = Plus / Minus
Query: 81 ctgcaaaccatatgatgctttctgaatggatcaccaaaatctagcatgcagatgtgcgat 140
||||||||||| ||||||||||| ||||||||||||||||| | | | || |||| |||
Sbjct: 2549189 ctgcaaaccatctgatgctttctcaatggatcaccaaaatccaacgtataggtgtgtgat 2549130
Query: 141 gatgaggggttgccaagaggaacttctgatccatacatgacaagagggttcgaaatgttt 200
| |||||| | ||||||||||| || ||||||||||| ||||||||||| || ||||
Sbjct: 2549129 ggtgagggaataccaagaggaacctcagatccatacatcacaagagggtttgagtggttt 2549070
Query: 201 gtgacatcataaacatttaccaccaattcctgattgccagctagctgcctcaacaaattt 260
||||||||||||||||| |||||||||||||| || ||||||| ||| ||||||||||||
Sbjct: 2549069 gtgacatcataaacattgaccaccaattcctggttaccagctaactgtctcaacaaattt 2549010
Query: 261 tccactaatgattctacatcaaatgctcccccaaggtatc 300
|| |||| ||| || |||||||||||||| ||||||||||
Sbjct: 2549009 tctactagtgactccacatcaaatgctcctccaaggtatc 2548970
Score = 91.7 bits (46), Expect = 4e-016
Identities = 73/82 (89%)
Strand = Plus / Minus
Query: 3 cccacaagcatacatatgacaaagacaccagatggggtagaaattgcagaccatgggaca 62
||||| ||||||||||| |||||||| || ||||| |||| |||||||||||||| |||
Sbjct: 2549358 cccaccagcatacatataacaaagacccctgatggtgtagtaattgcagaccatgaaaca 2549299
Query: 63 tgaggcttgtttctgtatctgc 84
||| ||||||||||||||||||
Sbjct: 2549298 tgaagcttgtttctgtatctgc 2549277
Score = 60.0 bits (30), Expect = 1e-006
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 357 tagacaggaaaagtcaatacgacacccaggtgattcgacatgagccggaa 406
||||||||||| ||||| || ||||||| |||||||||||| ||||||||
Sbjct: 2548612 tagacaggaaacgtcaagacaacacccaagtgattcgacatcagccggaa 2548563
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 198 bits (100), Expect = 2e-048
Identities = 190/220 (86%)
Strand = Plus / Minus
Query: 81 ctgcaaaccatatgatgctttctgaatggatcaccaaaatctagcatgcagatgtgcgat 140
||||||||||| ||||||||||| ||||||||||||||||| | | | || |||| |||
Sbjct: 29815352 ctgcaaaccatctgatgctttctcaatggatcaccaaaatccaacgtataggtgtgtgat 29815293
Query: 141 gatgaggggttgccaagaggaacttctgatccatacatgacaagagggttcgaaatgttt 200
| |||||| | ||||||||||| || ||||||||||| ||||||||||| || ||||
Sbjct: 29815292 ggtgagggaataccaagaggaacctcagatccatacatcacaagagggtttgagtggttt 29815233
Query: 201 gtgacatcataaacatttaccaccaattcctgattgccagctagctgcctcaacaaattt 260
||||||||||||||||| |||||||||||||| || ||||||| ||| ||||||||||||
Sbjct: 29815232 gtgacatcataaacattgaccaccaattcctggttaccagctaactgtctcaacaaattt 29815173
Query: 261 tccactaatgattctacatcaaatgctcccccaaggtatc 300
|| |||| ||| || |||||||||||||| ||||||||||
Sbjct: 29815172 tctactagtgactccacatcaaatgctcctccaaggtatc 29815133
Score = 91.7 bits (46), Expect = 4e-016
Identities = 73/82 (89%)
Strand = Plus / Minus
Query: 3 cccacaagcatacatatgacaaagacaccagatggggtagaaattgcagaccatgggaca 62
||||| ||||||||||| |||||||| || ||||| |||| |||||||||||||| |||
Sbjct: 29815521 cccaccagcatacatataacaaagacccctgatggtgtagtaattgcagaccatgaaaca 29815462
Query: 63 tgaggcttgtttctgtatctgc 84
||| ||||||||||||||||||
Sbjct: 29815461 tgaagcttgtttctgtatctgc 29815440
Score = 60.0 bits (30), Expect = 1e-006
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 357 tagacaggaaaagtcaatacgacacccaggtgattcgacatgagccggaa 406
||||||||||| ||||| || ||||||| |||||||||||| ||||||||
Sbjct: 29814775 tagacaggaaacgtcaagacaacacccaagtgattcgacatcagccggaa 29814726
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 198 bits (100), Expect = 2e-048
Identities = 190/220 (86%)
Strand = Plus / Minus
Query: 81 ctgcaaaccatatgatgctttctgaatggatcaccaaaatctagcatgcagatgtgcgat 140
||||||||||| ||||||||||| ||||||||||||||||| | | | || |||| |||
Sbjct: 28850651 ctgcaaaccatctgatgctttctcaatggatcaccaaaatccaacgtataggtgtgtgat 28850592
Query: 141 gatgaggggttgccaagaggaacttctgatccatacatgacaagagggttcgaaatgttt 200
| |||||| | ||||||||||| || ||||||||||| ||||||||||| || ||||
Sbjct: 28850591 ggtgagggaataccaagaggaacctcagatccatacatcacaagagggtttgagtggttt 28850532
Query: 201 gtgacatcataaacatttaccaccaattcctgattgccagctagctgcctcaacaaattt 260
||||||||||||||||| |||||||||||||| || ||||||| ||| ||||||||||||
Sbjct: 28850531 gtgacatcataaacattgaccaccaattcctggttaccagctaactgtctcaacaaattt 28850472
Query: 261 tccactaatgattctacatcaaatgctcccccaaggtatc 300
|| |||| ||| || |||||||||||||| ||||||||||
Sbjct: 28850471 tctactagtgactccacatcaaatgctcctccaaggtatc 28850432
Score = 91.7 bits (46), Expect = 4e-016
Identities = 73/82 (89%)
Strand = Plus / Minus
Query: 3 cccacaagcatacatatgacaaagacaccagatggggtagaaattgcagaccatgggaca 62
||||| ||||||||||| |||||||| || ||||| |||| |||||||||||||| |||
Sbjct: 28850820 cccaccagcatacatataacaaagacccctgatggtgtagtaattgcagaccatgaaaca 28850761
Query: 63 tgaggcttgtttctgtatctgc 84
||| ||||||||||||||||||
Sbjct: 28850760 tgaagcttgtttctgtatctgc 28850739
Score = 60.0 bits (30), Expect = 1e-006
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 357 tagacaggaaaagtcaatacgacacccaggtgattcgacatgagccggaa 406
||||||||||| ||||| || ||||||| |||||||||||| ||||||||
Sbjct: 28850074 tagacaggaaacgtcaagacaacacccaagtgattcgacatcagccggaa 28850025
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 198 bits (100), Expect = 2e-048
Identities = 190/220 (86%)
Strand = Plus / Minus
Query: 81 ctgcaaaccatatgatgctttctgaatggatcaccaaaatctagcatgcagatgtgcgat 140
||||||||||| ||||||||||| ||||||||||||||||| | | | || |||| |||
Sbjct: 28759327 ctgcaaaccatctgatgctttctcaatggatcaccaaaatccaacgtataggtgtgtgat 28759268
Query: 141 gatgaggggttgccaagaggaacttctgatccatacatgacaagagggttcgaaatgttt 200
| |||||| | ||||||||||| || ||||||||||| ||||||||||| || ||||
Sbjct: 28759267 ggtgagggaataccaagaggaacctcagatccatacatcacaagagggtttgagtggttt 28759208
Query: 201 gtgacatcataaacatttaccaccaattcctgattgccagctagctgcctcaacaaattt 260
||||||||||||||||| |||||||||||||| || ||||||| ||| ||||||||||||
Sbjct: 28759207 gtgacatcataaacattgaccaccaattcctggttaccagctaactgtctcaacaaattt 28759148
Query: 261 tccactaatgattctacatcaaatgctcccccaaggtatc 300
|| |||| ||| || |||||||||||||| ||||||||||
Sbjct: 28759147 tctactagtgactccacatcaaatgctcctccaaggtatc 28759108
Score = 91.7 bits (46), Expect = 4e-016
Identities = 73/82 (89%)
Strand = Plus / Minus
Query: 3 cccacaagcatacatatgacaaagacaccagatggggtagaaattgcagaccatgggaca 62
||||| ||||||||||| |||||||| || ||||| |||| |||||||||||||| |||
Sbjct: 28759496 cccaccagcatacatataacaaagacccctgatggtgtagtaattgcagaccatgaaaca 28759437
Query: 63 tgaggcttgtttctgtatctgc 84
||| ||||||||||||||||||
Sbjct: 28759436 tgaagcttgtttctgtatctgc 28759415
Score = 60.0 bits (30), Expect = 1e-006
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 357 tagacaggaaaagtcaatacgacacccaggtgattcgacatgagccggaa 406
||||||||||| ||||| || ||||||| |||||||||||| ||||||||
Sbjct: 28758750 tagacaggaaacgtcaagacaacacccaagtgattcgacatcagccggaa 28758701
>gb|AQ272632.1|AQ272632 nbxb0028G04r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0028G04r, DNA sequence
Length = 618
Score = 91.7 bits (46), Expect = 4e-016
Identities = 73/82 (89%)
Strand = Plus / Plus
Query: 3 cccacaagcatacatatgacaaagacaccagatggggtagaaattgcagaccatgggaca 62
||||| ||||||||||| |||||||| || ||||| |||| |||||||||||||| |||
Sbjct: 145 cccaccagcatacatataacaaagacccctgatggtgtagtaattgcagaccatgaaaca 204
Query: 63 tgaggcttgtttctgtatctgc 84
||| ||||||||||||||||||
Sbjct: 205 tgaagcttgtttctgtatctgc 226
Score = 89.7 bits (45), Expect = 1e-015
Identities = 114/137 (83%)
Strand = Plus / Plus
Query: 81 ctgcaaaccatatgatgctttctgaatggatcaccaaaatctagcatgcagatgtgcgat 140
||||||||||| ||||||||||| ||||||||||||||||| | | | | |||| |||
Sbjct: 314 ctgcaaaccatctgatgctttctcaatggatcaccaaaatccaacgtataagtgtgtgat 373
Query: 141 gatgaggggttgccaagaggaacttctgatccatacatgacaagagggttcgaaatgttt 200
| |||||| | ||||||||||| || ||||||||||| ||||||||||| || ||||
Sbjct: 374 ggtgagggaataccaagaggaacctcagatccatacatcacaagagggtttgagtggttt 433
Query: 201 gtgacatcataaacatt 217
|||||| |||||||||
Sbjct: 434 gtgacacaataaacatt 450
>ref|XM_467688.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2955
Score = 63.9 bits (32), Expect = 9e-008
Identities = 86/104 (82%)
Strand = Plus / Minus
Query: 198 tttgtgacatcataaacatttaccaccaattcctgattgccagctagctgcctcaacaaa 257
|||||||||||||| ||||| || || | |||||||||||||| || | |||| ||||
Sbjct: 770 tttgtgacatcatacacattcactacaatatcctgattgccagcaagtttactcagcaaa 711
Query: 258 ttttccactaatgattctacatcaaatgctcccccaaggtatcc 301
|||||||| | ||| || |||||||| ||||| ||||| |||||
Sbjct: 710 ttttccacgagtgactccacatcaaaagctccaccaagatatcc 667
>dbj|AP005112.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0684F11
Length = 147731
Score = 61.9 bits (31), Expect = 3e-007
Identities = 85/103 (82%)
Strand = Plus / Minus
Query: 198 tttgtgacatcataaacatttaccaccaattcctgattgccagctagctgcctcaacaaa 257
|||||||||||||| ||||| || || | |||||||||||||| || | |||| ||||
Sbjct: 27853 tttgtgacatcatacacattcactacaatatcctgattgccagcaagtttactcagcaaa 27794
Query: 258 ttttccactaatgattctacatcaaatgctcccccaaggtatc 300
|||||||| | ||| || |||||||| ||||| ||||| ||||
Sbjct: 27793 ttttccacgagtgactccacatcaaaagctccaccaagatatc 27751
>gb|AACV01005368.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005368,
whole genome shotgun sequence
Length = 22440
Score = 61.9 bits (31), Expect = 3e-007
Identities = 85/103 (82%)
Strand = Plus / Plus
Query: 198 tttgtgacatcataaacatttaccaccaattcctgattgccagctagctgcctcaacaaa 257
|||||||||||||| ||||| || || | |||||||||||||| || | |||| ||||
Sbjct: 586 tttgtgacatcatacacattcactacaatatcctgattgccagcaagtttactcagcaaa 645
Query: 258 ttttccactaatgattctacatcaaatgctcccccaaggtatc 300
|||||||| | ||| || |||||||| ||||| ||||| ||||
Sbjct: 646 ttttccacgagtgactccacatcaaaagctccaccaagatatc 688
>ref|NT_107181.1| Oryza sativa (japonica cultivar-group)
Length = 9248309
Score = 61.9 bits (31), Expect = 3e-007
Identities = 85/103 (82%)
Strand = Plus / Minus
Query: 198 tttgtgacatcataaacatttaccaccaattcctgattgccagctagctgcctcaacaaa 257
|||||||||||||| ||||| || || | |||||||||||||| || | |||| ||||
Sbjct: 6009275 tttgtgacatcatacacattcactacaatatcctgattgccagcaagtttactcagcaaa 6009216
Query: 258 ttttccactaatgattctacatcaaatgctcccccaaggtatc 300
|||||||| | ||| || |||||||| ||||| ||||| ||||
Sbjct: 6009215 ttttccacgagtgactccacatcaaaagctccaccaagatatc 6009173
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 61.9 bits (31), Expect = 3e-007
Identities = 85/103 (82%)
Strand = Plus / Minus
Query: 198 tttgtgacatcataaacatttaccaccaattcctgattgccagctagctgcctcaacaaa 257
|||||||||||||| ||||| || || | |||||||||||||| || | |||| ||||
Sbjct: 17338476 tttgtgacatcatacacattcactacaatatcctgattgccagcaagtttactcagcaaa 17338417
Query: 258 ttttccactaatgattctacatcaaatgctcccccaaggtatc 300
|||||||| | ||| || |||||||| ||||| ||||| ||||
Sbjct: 17338416 ttttccacgagtgactccacatcaaaagctccaccaagatatc 17338374
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 61.9 bits (31), Expect = 3e-007
Identities = 85/103 (82%)
Strand = Plus / Minus
Query: 198 tttgtgacatcataaacatttaccaccaattcctgattgccagctagctgcctcaacaaa 257
|||||||||||||| ||||| || || | |||||||||||||| || | |||| ||||
Sbjct: 30791540 tttgtgacatcatacacattcactacaatatcctgattgccagcaagtttactcagcaaa 30791481
Query: 258 ttttccactaatgattctacatcaaatgctcccccaaggtatc 300
|||||||| | ||| || |||||||| ||||| ||||| ||||
Sbjct: 30791480 ttttccacgagtgactccacatcaaaagctccaccaagatatc 30791438
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 61.9 bits (31), Expect = 3e-007
Identities = 85/103 (82%)
Strand = Plus / Minus
Query: 198 tttgtgacatcataaacatttaccaccaattcctgattgccagctagctgcctcaacaaa 257
|||||||||||||| ||||| || || | |||||||||||||| || | |||| ||||
Sbjct: 30844276 tttgtgacatcatacacattcactacaatatcctgattgccagcaagtttactcagcaaa 30844217
Query: 258 ttttccactaatgattctacatcaaatgctcccccaaggtatc 300
|||||||| | ||| || |||||||| ||||| ||||| ||||
Sbjct: 30844216 ttttccacgagtgactccacatcaaaagctccaccaagatatc 30844174
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 723,392
Number of Sequences: 438736
Number of extensions: 723392
Number of successful extensions: 12714
Number of sequences better than 0.5: 18
Number of HSP's better than 0.5 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12449
Number of HSP's gapped (non-prelim): 254
length of query: 557
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 536
effective length of database: 2,791,206,460
effective search space: 1496086662560
effective search space used: 1496086662560
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)