BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAF41c07.yg.2.1
(691 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_550490.1| Oryza sativa (japonica cultivar-group), mRNA 377 e-102
gb|AACV01012882.1| Oryza sativa (japonica cultivar-group) c... 131 5e-028
dbj|AP001552.1| Oryza sativa (japonica cultivar-group) gene... 131 5e-028
dbj|AP001389.1| Oryza sativa (japonica cultivar-group) geno... 131 5e-028
ref|NT_107230.2| Oryza sativa (japonica cultivar-group) 131 5e-028
gb|CH401209.1| Oryza sativa (japonica cultivar-group) chrom... 131 5e-028
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 131 5e-028
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 131 5e-028
gb|CB671521.1|CB671521 OSJNEe05C09.f OSJNEe Oryza sativa (j... 127 9e-027
dbj|AK069531.1| Oryza sativa (japonica cultivar-group) cDNA... 127 9e-027
ref|NM_187562.1| Oryza sativa (japonica cultivar-group), p... 127 9e-027
gb|CF307470.1|CF307470 HDA1--06-M20.g1 OsHDAC1-overexpressi... 92 5e-016
gb|CB668255.1|CB668255 OSJNEd16A12.r OSJNEd Oryza sativa (j... 76 3e-011
dbj|AG208568.1| Oryza sativa (japonica cultivar-group) DNA,... 66 3e-008
dbj|AG208570.1| Oryza sativa (japonica cultivar-group) DNA,... 66 3e-008
dbj|AG210242.1| Oryza sativa (japonica cultivar-group) DNA,... 66 3e-008
dbj|AG211136.1| Oryza sativa (japonica cultivar-group) DNA,... 66 3e-008
dbj|AG020899.1| Oryza sativa (japonica cultivar-group) DNA,... 66 3e-008
dbj|AP003454.1| Oryza sativa (japonica cultivar-group) chro... 66 3e-008
dbj|AK100271.1| Oryza sativa (japonica cultivar-group) cDNA... 66 3e-008
gb|AACV01013162.1| Oryza sativa (japonica cultivar-group) c... 66 3e-008
dbj|AP007226.1| Oryza sativa (japonica cultivar-group) geno... 66 3e-008
dbj|AP007257.2| Oryza sativa (japonica cultivar-group) geno... 66 3e-008
gb|AC118980.2| Oryza sativa (japonica cultivar-group) chrom... 64 1e-007
gb|AACV01005773.1| Oryza sativa (japonica cultivar-group) c... 64 1e-007
ref|NT_107183.1| Oryza sativa (japonica cultivar-group) 64 1e-007
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 64 1e-007
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 64 1e-007
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 64 1e-007
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 64 1e-007
dbj|AK099782.1| Oryza sativa (japonica cultivar-group) cDNA... 54 1e-004
dbj|AK120195.1| Oryza sativa (japonica cultivar-group) cDNA... 54 1e-004
dbj|AK120402.1| Oryza sativa (japonica cultivar-group) cDNA... 54 1e-004
gb|AACV01002367.1| Oryza sativa (japonica cultivar-group) c... 54 1e-004
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 54 1e-004
ref|NM_191270.1| Oryza sativa (japonica cultivar-group), p... 54 1e-004
ref|NM_193211.1| Oryza sativa (japonica cultivar-group), p... 54 1e-004
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 54 1e-004
dbj|AP003249.3| Oryza sativa (japonica cultivar-group) geno... 54 1e-004
dbj|AP003268.4| Oryza sativa (japonica cultivar-group) geno... 54 1e-004
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 54 1e-004
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 54 1e-004
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 54 1e-004
dbj|AP004611.3| Oryza sativa (japonica cultivar-group) geno... 50 0.002
gb|AACV01001361.1| Oryza sativa (japonica cultivar-group) c... 50 0.002
gb|AACV01002851.1| Oryza sativa (japonica cultivar-group) c... 50 0.002
ref|NM_190295.1| Oryza sativa (japonica cultivar-group), p... 50 0.002
ref|NT_079926.2| Oryza sativa (japonica cultivar-group) 50 0.002
dbj|AP003276.3| Oryza sativa (japonica cultivar-group) geno... 50 0.002
dbj|AP006233.3| Oryza sativa (japonica cultivar-group) geno... 50 0.002
dbj|AP003418.2| Oryza sativa (japonica cultivar-group) geno... 50 0.002
dbj|BA000029.3| Oryza sativa (japonica cultivar-group) mito... 50 0.002
gb|CH401166.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
dbj|AK062279.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.006
gb|AACV01002091.1| Oryza sativa (japonica cultivar-group) c... 48 0.006
ref|NM_187591.1| Oryza sativa (japonica cultivar-group), p... 48 0.006
ref|NM_191973.1| Oryza sativa (japonica cultivar-group), p... 48 0.006
dbj|AP003223.3| Oryza sativa (japonica cultivar-group) geno... 48 0.006
dbj|AP003264.3| Oryza sativa (japonica cultivar-group) geno... 48 0.006
gb|AY324384.1| Oryza sativa (japonica cultivar-group) callo... 46 0.025
dbj|AP004082.3| Oryza sativa (japonica cultivar-group) geno... 46 0.025
dbj|AP005290.2| Oryza sativa (japonica cultivar-group) geno... 46 0.025
gb|AACV01005686.1| Oryza sativa (japonica cultivar-group) c... 46 0.025
ref|XM_468556.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.025
ref|NT_107182.1| Oryza sativa (japonica cultivar-group) 46 0.025
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.025
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.025
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 46 0.025
gb|CW883569.1|CW883569 Rice CISP Intron:I00_X00_F_PRSC1_002... 44 0.099
gb|CW883855.1|CW883855 Rice CISP Intron:I00_X00_F_PRSC1_002... 44 0.099
dbj|AK064446.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.099
gb|AACV01001413.1| Oryza sativa (japonica cultivar-group) c... 44 0.099
ref|NM_193204.1| Oryza sativa (japonica cultivar-group), p... 44 0.099
dbj|AP003447.2| Oryza sativa (japonica cultivar-group) geno... 44 0.099
dbj|AP003445.2| Oryza sativa (japonica cultivar-group) geno... 44 0.099
gb|AQ363486.2|AQ363486 nbxb0059C14r CUGI Rice BAC Library O... 42 0.39
dbj|AG022680.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.39
dbj|AK067961.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.39
dbj|AK104001.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.39
gb|AC104427.2| Oryza sativa (japonica cultivar-group) chrom... 42 0.39
gb|AC144426.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.39
dbj|AP004861.3| Oryza sativa (japonica cultivar-group) geno... 42 0.39
dbj|AP005841.3| Oryza sativa (japonica cultivar-group) geno... 42 0.39
gb|AACV01004445.1| Oryza sativa (japonica cultivar-group) c... 42 0.39
gb|AACV01005795.1| Oryza sativa (japonica cultivar-group) c... 42 0.39
ref|XM_465925.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.39
ref|NT_107179.1| Oryza sativa (japonica cultivar-group) 42 0.39
ref|XM_506814.1| PREDICTED Oryza sativa (japonica cultivar-... 42 0.39
dbj|D25369.1|RICG1133 Oryza sativa (japonica cultivar-group... 42 0.39
>ref|XM_550490.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 5316
Score = 377 bits (190), Expect = e-102
Identities = 334/382 (87%)
Strand = Plus / Minus
Query: 1 acacatctcggctgagaacttgctcaccattgcctccagcaactttcccctcaaatagtg 60
||||||||| ||| | |||||| ||||| || || || || |||||||| || || ||||
Sbjct: 3973 acacatctctgcttaaaacttgttcaccgttaccaccggctactttcccttcgaaaagtg 3914
Query: 61 caatttggttcaagccaacatcacgccctttccccacctggatatattcatggtgtgtga 120
| ||||||||||| |||||||| || |||||||| |||||||||||||||||||||||||
Sbjct: 3913 ctatttggttcaaaccaacatctcgtcctttcccaacctggatatattcatggtgtgtga 3854
Query: 121 tgttcccttggcgcaaagtcgaattgaacccggcatatatatcttcgcttatattaatca 180
| || || ||||||| |||||||||||| || |||||||||||||| |||||||||||||
Sbjct: 3853 tatttccctggcgcagagtcgaattgaatccagcatatatatcttcacttatattaatca 3794
Query: 181 ctcgagacgccttgctaatgccacctcgggttatgtgaaatatccgatcaaaaacatcag 240
| | || || ||||| |||||||||| |||||| |||||||| ||||||||||||||||
Sbjct: 3793 ccccggatgctttgcttatgccacctctggttatatgaaatatgcgatcaaaaacatcag 3734
Query: 241 gatgtccatagtgcattcgaactttgaggtaagcaagaacacgttgccccaaagtaacaa 300
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 3733 gatgtccataatgcattcgaaccttgaggtaagcaagaacacgttgccccaaagtaacaa 3674
Query: 301 aactagtctcctgtttcgacataaatgacgccagcgaagagacactccccgtgaatacat 360
|||| || ||||| || ||||||||||| || |||||||| ||||| |||||||| ||||
Sbjct: 3673 aacttgtttcctggttagacataaatgatgcaagcgaagaaacacttcccgtgaacacat 3614
Query: 361 gctccctcacacctaggattgt 382
| ||||| ||||| || |||||
Sbjct: 3613 gttccctaacaccaagaattgt 3592
Score = 192 bits (97), Expect = 2e-046
Identities = 181/211 (85%)
Strand = Plus / Minus
Query: 418 gaaattcttcaagtaaatttctcattttcattgcttcctccaagtagttatcctgattca 477
|||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct: 3565 gaaactcttcaagtaaattcctcattttcattgcttcctctaagtagttatcctgattca 3506
Query: 478 tatcgatcgtctgaactgcatctcctcgagtgaagattatggcatggttttggttctcag 537
| || || ||||| | |||||||||||||||||| || || |||||||| || || ||||
Sbjct: 3505 tgtcaattgtctgtattgcatctcctcgagtgaatataatagcatggttctgattttcag 3446
Query: 538 gtntgccttcaccnagcttggggttcccaggcaatttaatgcagtatatttcttggtctt 597
|| | || || || |||||||| || ||||||| ||||||| ||||||||||||| ||||
Sbjct: 3445 gttttccctcgccgagcttgggattaccaggcagtttaatggagtatatttcttgatctt 3386
Query: 598 tgccatgaacatcannctncacnagcttgga 628
| |||||||||||| || || ||||||||
Sbjct: 3385 ttccatgaacatcagccttaactagcttgga 3355
>gb|AACV01012882.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg012882, whole
genome shotgun sequence
Length = 24683
Score = 131 bits (66), Expect = 5e-028
Identities = 99/110 (90%)
Strand = Plus / Minus
Query: 153 gcatatatatcttcgcttatattaatcactcgagacgccttgctaatgccacctcgggtt 212
|||||||||||||| |||||||||||||| | || || ||||| |||||||||| ||||
Sbjct: 10374 gcatatatatcttcacttatattaatcaccccggatgctttgcttatgccacctctggtt 10315
Query: 213 atgtgaaatatccgatcaaaaacatcaggatgtccatagtgcattcgaac 262
|| |||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 10314 atatgaaatatgcgatcaaaaacatcaggatgtccataatgcattcgaac 10265
Score = 109 bits (55), Expect = 2e-021
Identities = 76/83 (91%)
Strand = Plus / Minus
Query: 264 ttgaggtaagcaagaacacgttgccccaaagtaacaaaactagtctcctgtttcgacata 323
||||||||||||||||||||||||||||||||||||||||| || ||||| || ||||||
Sbjct: 10132 ttgaggtaagcaagaacacgttgccccaaagtaacaaaacttgtttcctggttagacata 10073
Query: 324 aatgacgccagcgaagagacact 346
||||| || |||||||| |||||
Sbjct: 10072 aatgatgcaagcgaagaaacact 10050
Score = 85.7 bits (43), Expect = 3e-014
Identities = 101/121 (83%)
Strand = Plus / Minus
Query: 469 cctgattcatatcgatcgtctgaactgcatctcctcgagtgaagattatggcatggtttt 528
|||||||||| || || ||||| | |||||||||||||||||| || || |||||||| |
Sbjct: 9140 cctgattcatgtcaattgtctgtattgcatctcctcgagtgaatataatagcatggttct 9081
Query: 529 ggttctcaggtntgccttcaccnagcttggggttcccaggcaatttaatgcagtatattt 588
| || |||||| | || || || |||||||| || ||||||| ||||||| |||||||||
Sbjct: 9080 gattttcaggttttccctcgccgagcttgggattaccaggcagtttaatggagtatattt 9021
Query: 589 c 589
|
Sbjct: 9020 c 9020
Score = 83.8 bits (42), Expect = 1e-013
Identities = 51/54 (94%)
Strand = Plus / Minus
Query: 418 gaaattcttcaagtaaatttctcattttcattgcttcctccaagtagttatcct 471
|||| |||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 9895 gaaactcttcaagtaaattcctcattttcattgcttcctctaagtagttatcct 9842
Score = 73.8 bits (37), Expect = 1e-010
Identities = 49/53 (92%)
Strand = Plus / Minus
Query: 96 acctggatatattcatggtgtgtgatgttcccttggcgcaaagtcgaattgaa 148
|||||||||||||||||||||||||| || || ||||||| ||||||||||||
Sbjct: 10863 acctggatatattcatggtgtgtgatatttccctggcgcagagtcgaattgaa 10811
Score = 61.9 bits (31), Expect = 4e-007
Identities = 82/99 (82%)
Strand = Plus / Minus
Query: 1 acacatctcggctgagaacttgctcaccattgcctccagcaactttcccctcaaatagtg 60
||||||||| ||| | |||||| ||||| || || || || |||||||| || || ||||
Sbjct: 11381 acacatctctgcttaaaacttgttcaccgttaccaccggctactttcccttcgaaaagtg 11322
Query: 61 caatttggttcaagccaacatcacgccctttccccacct 99
| ||||||||||| |||||||| || |||||||| ||||
Sbjct: 11321 ctatttggttcaaaccaacatctcgtcctttcccaacct 11283
>dbj|AP001552.1| Oryza sativa (japonica cultivar-group) geneomic DNA, chromosome 6, PAC
clone:P0029D06
Length = 150120
Score = 131 bits (66), Expect = 5e-028
Identities = 99/110 (90%)
Strand = Plus / Plus
Query: 153 gcatatatatcttcgcttatattaatcactcgagacgccttgctaatgccacctcgggtt 212
|||||||||||||| |||||||||||||| | || || ||||| |||||||||| ||||
Sbjct: 135979 gcatatatatcttcacttatattaatcaccccggatgctttgcttatgccacctctggtt 136038
Query: 213 atgtgaaatatccgatcaaaaacatcaggatgtccatagtgcattcgaac 262
|| |||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 136039 atatgaaatatgcgatcaaaaacatcaggatgtccataatgcattcgaac 136088
Score = 109 bits (55), Expect = 2e-021
Identities = 76/83 (91%)
Strand = Plus / Plus
Query: 264 ttgaggtaagcaagaacacgttgccccaaagtaacaaaactagtctcctgtttcgacata 323
||||||||||||||||||||||||||||||||||||||||| || ||||| || ||||||
Sbjct: 136221 ttgaggtaagcaagaacacgttgccccaaagtaacaaaacttgtttcctggttagacata 136280
Query: 324 aatgacgccagcgaagagacact 346
||||| || |||||||| |||||
Sbjct: 136281 aatgatgcaagcgaagaaacact 136303
Score = 85.7 bits (43), Expect = 3e-014
Identities = 101/121 (83%)
Strand = Plus / Plus
Query: 469 cctgattcatatcgatcgtctgaactgcatctcctcgagtgaagattatggcatggtttt 528
|||||||||| || || ||||| | |||||||||||||||||| || || |||||||| |
Sbjct: 137213 cctgattcatgtcaattgtctgtattgcatctcctcgagtgaatataatagcatggttct 137272
Query: 529 ggttctcaggtntgccttcaccnagcttggggttcccaggcaatttaatgcagtatattt 588
| || |||||| | || || || |||||||| || ||||||| ||||||| |||||||||
Sbjct: 137273 gattttcaggttttccctcgccgagcttgggattaccaggcagtttaatggagtatattt 137332
Query: 589 c 589
|
Sbjct: 137333 c 137333
Score = 83.8 bits (42), Expect = 1e-013
Identities = 51/54 (94%)
Strand = Plus / Plus
Query: 418 gaaattcttcaagtaaatttctcattttcattgcttcctccaagtagttatcct 471
|||| |||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 136458 gaaactcttcaagtaaattcctcattttcattgcttcctctaagtagttatcct 136511
Score = 73.8 bits (37), Expect = 1e-010
Identities = 49/53 (92%)
Strand = Plus / Plus
Query: 96 acctggatatattcatggtgtgtgatgttcccttggcgcaaagtcgaattgaa 148
|||||||||||||||||||||||||| || || ||||||| ||||||||||||
Sbjct: 135490 acctggatatattcatggtgtgtgatatttccctggcgcagagtcgaattgaa 135542
Score = 61.9 bits (31), Expect = 4e-007
Identities = 82/99 (82%)
Strand = Plus / Plus
Query: 1 acacatctcggctgagaacttgctcaccattgcctccagcaactttcccctcaaatagtg 60
||||||||| ||| | |||||| ||||| || || || || |||||||| || || ||||
Sbjct: 134972 acacatctctgcttaaaacttgttcaccgttaccaccggctactttcccttcgaaaagtg 135031
Query: 61 caatttggttcaagccaacatcacgccctttccccacct 99
| ||||||||||| |||||||| || |||||||| ||||
Sbjct: 135032 ctatttggttcaaaccaacatctcgtcctttcccaacct 135070
>dbj|AP001389.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0541H01
Length = 157519
Score = 131 bits (66), Expect = 5e-028
Identities = 99/110 (90%)
Strand = Plus / Plus
Query: 153 gcatatatatcttcgcttatattaatcactcgagacgccttgctaatgccacctcgggtt 212
|||||||||||||| |||||||||||||| | || || ||||| |||||||||| ||||
Sbjct: 12685 gcatatatatcttcacttatattaatcaccccggatgctttgcttatgccacctctggtt 12744
Query: 213 atgtgaaatatccgatcaaaaacatcaggatgtccatagtgcattcgaac 262
|| |||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 12745 atatgaaatatgcgatcaaaaacatcaggatgtccataatgcattcgaac 12794
Score = 109 bits (55), Expect = 2e-021
Identities = 76/83 (91%)
Strand = Plus / Plus
Query: 264 ttgaggtaagcaagaacacgttgccccaaagtaacaaaactagtctcctgtttcgacata 323
||||||||||||||||||||||||||||||||||||||||| || ||||| || ||||||
Sbjct: 12927 ttgaggtaagcaagaacacgttgccccaaagtaacaaaacttgtttcctggttagacata 12986
Query: 324 aatgacgccagcgaagagacact 346
||||| || |||||||| |||||
Sbjct: 12987 aatgatgcaagcgaagaaacact 13009
Score = 85.7 bits (43), Expect = 3e-014
Identities = 101/121 (83%)
Strand = Plus / Plus
Query: 469 cctgattcatatcgatcgtctgaactgcatctcctcgagtgaagattatggcatggtttt 528
|||||||||| || || ||||| | |||||||||||||||||| || || |||||||| |
Sbjct: 13919 cctgattcatgtcaattgtctgtattgcatctcctcgagtgaatataatagcatggttct 13978
Query: 529 ggttctcaggtntgccttcaccnagcttggggttcccaggcaatttaatgcagtatattt 588
| || |||||| | || || || |||||||| || ||||||| ||||||| |||||||||
Sbjct: 13979 gattttcaggttttccctcgccgagcttgggattaccaggcagtttaatggagtatattt 14038
Query: 589 c 589
|
Sbjct: 14039 c 14039
Score = 83.8 bits (42), Expect = 1e-013
Identities = 51/54 (94%)
Strand = Plus / Plus
Query: 418 gaaattcttcaagtaaatttctcattttcattgcttcctccaagtagttatcct 471
|||| |||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 13164 gaaactcttcaagtaaattcctcattttcattgcttcctctaagtagttatcct 13217
Score = 73.8 bits (37), Expect = 1e-010
Identities = 49/53 (92%)
Strand = Plus / Plus
Query: 96 acctggatatattcatggtgtgtgatgttcccttggcgcaaagtcgaattgaa 148
|||||||||||||||||||||||||| || || ||||||| ||||||||||||
Sbjct: 12196 acctggatatattcatggtgtgtgatatttccctggcgcagagtcgaattgaa 12248
Score = 61.9 bits (31), Expect = 4e-007
Identities = 82/99 (82%)
Strand = Plus / Plus
Query: 1 acacatctcggctgagaacttgctcaccattgcctccagcaactttcccctcaaatagtg 60
||||||||| ||| | |||||| ||||| || || || || |||||||| || || ||||
Sbjct: 11678 acacatctctgcttaaaacttgttcaccgttaccaccggctactttcccttcgaaaagtg 11737
Query: 61 caatttggttcaagccaacatcacgccctttccccacct 99
| ||||||||||| |||||||| || |||||||| ||||
Sbjct: 11738 ctatttggttcaaaccaacatctcgtcctttcccaacct 11776
>ref|NT_107230.2| Oryza sativa (japonica cultivar-group)
Length = 2805126
Score = 131 bits (66), Expect = 5e-028
Identities = 99/110 (90%)
Strand = Plus / Plus
Query: 153 gcatatatatcttcgcttatattaatcactcgagacgccttgctaatgccacctcgggtt 212
|||||||||||||| |||||||||||||| | || || ||||| |||||||||| ||||
Sbjct: 693128 gcatatatatcttcacttatattaatcaccccggatgctttgcttatgccacctctggtt 693187
Query: 213 atgtgaaatatccgatcaaaaacatcaggatgtccatagtgcattcgaac 262
|| |||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 693188 atatgaaatatgcgatcaaaaacatcaggatgtccataatgcattcgaac 693237
Score = 109 bits (55), Expect = 2e-021
Identities = 76/83 (91%)
Strand = Plus / Plus
Query: 264 ttgaggtaagcaagaacacgttgccccaaagtaacaaaactagtctcctgtttcgacata 323
||||||||||||||||||||||||||||||||||||||||| || ||||| || ||||||
Sbjct: 693370 ttgaggtaagcaagaacacgttgccccaaagtaacaaaacttgtttcctggttagacata 693429
Query: 324 aatgacgccagcgaagagacact 346
||||| || |||||||| |||||
Sbjct: 693430 aatgatgcaagcgaagaaacact 693452
Score = 85.7 bits (43), Expect = 3e-014
Identities = 101/121 (83%)
Strand = Plus / Plus
Query: 469 cctgattcatatcgatcgtctgaactgcatctcctcgagtgaagattatggcatggtttt 528
|||||||||| || || ||||| | |||||||||||||||||| || || |||||||| |
Sbjct: 694362 cctgattcatgtcaattgtctgtattgcatctcctcgagtgaatataatagcatggttct 694421
Query: 529 ggttctcaggtntgccttcaccnagcttggggttcccaggcaatttaatgcagtatattt 588
| || |||||| | || || || |||||||| || ||||||| ||||||| |||||||||
Sbjct: 694422 gattttcaggttttccctcgccgagcttgggattaccaggcagtttaatggagtatattt 694481
Query: 589 c 589
|
Sbjct: 694482 c 694482
Score = 83.8 bits (42), Expect = 1e-013
Identities = 51/54 (94%)
Strand = Plus / Plus
Query: 418 gaaattcttcaagtaaatttctcattttcattgcttcctccaagtagttatcct 471
|||| |||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 693607 gaaactcttcaagtaaattcctcattttcattgcttcctctaagtagttatcct 693660
Score = 73.8 bits (37), Expect = 1e-010
Identities = 49/53 (92%)
Strand = Plus / Plus
Query: 96 acctggatatattcatggtgtgtgatgttcccttggcgcaaagtcgaattgaa 148
|||||||||||||||||||||||||| || || ||||||| ||||||||||||
Sbjct: 692639 acctggatatattcatggtgtgtgatatttccctggcgcagagtcgaattgaa 692691
Score = 61.9 bits (31), Expect = 4e-007
Identities = 82/99 (82%)
Strand = Plus / Plus
Query: 1 acacatctcggctgagaacttgctcaccattgcctccagcaactttcccctcaaatagtg 60
||||||||| ||| | |||||| ||||| || || || || |||||||| || || ||||
Sbjct: 692121 acacatctctgcttaaaacttgttcaccgttaccaccggctactttcccttcgaaaagtg 692180
Query: 61 caatttggttcaagccaacatcacgccctttccccacct 99
| ||||||||||| |||||||| || |||||||| ||||
Sbjct: 692181 ctatttggttcaaaccaacatctcgtcctttcccaacct 692219
>gb|CH401209.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000046
genomic scaffold, whole genome shotgun sequence
Length = 8607552
Score = 131 bits (66), Expect = 5e-028
Identities = 99/110 (90%)
Strand = Plus / Plus
Query: 153 gcatatatatcttcgcttatattaatcactcgagacgccttgctaatgccacctcgggtt 212
|||||||||||||| |||||||||||||| | || || ||||| |||||||||| ||||
Sbjct: 621947 gcatatatatcttcacttatattaatcaccccggatgctttgcttatgccacctctggtt 622006
Query: 213 atgtgaaatatccgatcaaaaacatcaggatgtccatagtgcattcgaac 262
|| |||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 622007 atatgaaatatgcgatcaaaaacatcaggatgtccataatgcattcgaac 622056
Score = 109 bits (55), Expect = 2e-021
Identities = 76/83 (91%)
Strand = Plus / Plus
Query: 264 ttgaggtaagcaagaacacgttgccccaaagtaacaaaactagtctcctgtttcgacata 323
||||||||||||||||||||||||||||||||||||||||| || ||||| || ||||||
Sbjct: 622189 ttgaggtaagcaagaacacgttgccccaaagtaacaaaacttgtttcctggttagacata 622248
Query: 324 aatgacgccagcgaagagacact 346
||||| || |||||||| |||||
Sbjct: 622249 aatgatgcaagcgaagaaacact 622271
Score = 85.7 bits (43), Expect = 3e-014
Identities = 101/121 (83%)
Strand = Plus / Plus
Query: 469 cctgattcatatcgatcgtctgaactgcatctcctcgagtgaagattatggcatggtttt 528
|||||||||| || || ||||| | |||||||||||||||||| || || |||||||| |
Sbjct: 623181 cctgattcatgtcaattgtctgtattgcatctcctcgagtgaatataatagcatggttct 623240
Query: 529 ggttctcaggtntgccttcaccnagcttggggttcccaggcaatttaatgcagtatattt 588
| || |||||| | || || || |||||||| || ||||||| ||||||| |||||||||
Sbjct: 623241 gattttcaggttttccctcgccgagcttgggattaccaggcagtttaatggagtatattt 623300
Query: 589 c 589
|
Sbjct: 623301 c 623301
Score = 83.8 bits (42), Expect = 1e-013
Identities = 51/54 (94%)
Strand = Plus / Plus
Query: 418 gaaattcttcaagtaaatttctcattttcattgcttcctccaagtagttatcct 471
|||| |||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 622426 gaaactcttcaagtaaattcctcattttcattgcttcctctaagtagttatcct 622479
Score = 73.8 bits (37), Expect = 1e-010
Identities = 49/53 (92%)
Strand = Plus / Plus
Query: 96 acctggatatattcatggtgtgtgatgttcccttggcgcaaagtcgaattgaa 148
|||||||||||||||||||||||||| || || ||||||| ||||||||||||
Sbjct: 621458 acctggatatattcatggtgtgtgatatttccctggcgcagagtcgaattgaa 621510
Score = 65.9 bits (33), Expect = 3e-008
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 189 gccttgctaatgccacctcgggttatgtgaaatatccgatcaaaaacatcaggatgtcca 248
|||||||||||||||||||| || |||||||| || | |||||| ||||||||||| ||
Sbjct: 3913963 gccttgctaatgccacctcgtgtaatgtgaaaaattctatcaaatacatcaggatgcccg 3914022
Query: 249 tagtg 253
|||||
Sbjct: 3914023 tagtg 3914027
Score = 61.9 bits (31), Expect = 4e-007
Identities = 82/99 (82%)
Strand = Plus / Plus
Query: 1 acacatctcggctgagaacttgctcaccattgcctccagcaactttcccctcaaatagtg 60
||||||||| ||| | |||||| ||||| || || || || |||||||| || || ||||
Sbjct: 620940 acacatctctgcttaaaacttgttcaccgttaccaccggctactttcccttcgaaaagtg 620999
Query: 61 caatttggttcaagccaacatcacgccctttccccacct 99
| ||||||||||| |||||||| || |||||||| ||||
Sbjct: 621000 ctatttggttcaaaccaacatctcgtcctttcccaacct 621038
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 131 bits (66), Expect = 5e-028
Identities = 99/110 (90%)
Strand = Plus / Plus
Query: 153 gcatatatatcttcgcttatattaatcactcgagacgccttgctaatgccacctcgggtt 212
|||||||||||||| |||||||||||||| | || || ||||| |||||||||| ||||
Sbjct: 621947 gcatatatatcttcacttatattaatcaccccggatgctttgcttatgccacctctggtt 622006
Query: 213 atgtgaaatatccgatcaaaaacatcaggatgtccatagtgcattcgaac 262
|| |||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 622007 atatgaaatatgcgatcaaaaacatcaggatgtccataatgcattcgaac 622056
Score = 109 bits (55), Expect = 2e-021
Identities = 76/83 (91%)
Strand = Plus / Plus
Query: 264 ttgaggtaagcaagaacacgttgccccaaagtaacaaaactagtctcctgtttcgacata 323
||||||||||||||||||||||||||||||||||||||||| || ||||| || ||||||
Sbjct: 622189 ttgaggtaagcaagaacacgttgccccaaagtaacaaaacttgtttcctggttagacata 622248
Query: 324 aatgacgccagcgaagagacact 346
||||| || |||||||| |||||
Sbjct: 622249 aatgatgcaagcgaagaaacact 622271
Score = 85.7 bits (43), Expect = 3e-014
Identities = 101/121 (83%)
Strand = Plus / Plus
Query: 469 cctgattcatatcgatcgtctgaactgcatctcctcgagtgaagattatggcatggtttt 528
|||||||||| || || ||||| | |||||||||||||||||| || || |||||||| |
Sbjct: 623181 cctgattcatgtcaattgtctgtattgcatctcctcgagtgaatataatagcatggttct 623240
Query: 529 ggttctcaggtntgccttcaccnagcttggggttcccaggcaatttaatgcagtatattt 588
| || |||||| | || || || |||||||| || ||||||| ||||||| |||||||||
Sbjct: 623241 gattttcaggttttccctcgccgagcttgggattaccaggcagtttaatggagtatattt 623300
Query: 589 c 589
|
Sbjct: 623301 c 623301
Score = 83.8 bits (42), Expect = 1e-013
Identities = 51/54 (94%)
Strand = Plus / Plus
Query: 418 gaaattcttcaagtaaatttctcattttcattgcttcctccaagtagttatcct 471
|||| |||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 622426 gaaactcttcaagtaaattcctcattttcattgcttcctctaagtagttatcct 622479
Score = 73.8 bits (37), Expect = 1e-010
Identities = 49/53 (92%)
Strand = Plus / Plus
Query: 96 acctggatatattcatggtgtgtgatgttcccttggcgcaaagtcgaattgaa 148
|||||||||||||||||||||||||| || || ||||||| ||||||||||||
Sbjct: 621458 acctggatatattcatggtgtgtgatatttccctggcgcagagtcgaattgaa 621510
Score = 65.9 bits (33), Expect = 3e-008
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 189 gccttgctaatgccacctcgggttatgtgaaatatccgatcaaaaacatcaggatgtcca 248
|||||||||||||||||||| || |||||||| || | |||||| ||||||||||| ||
Sbjct: 3913963 gccttgctaatgccacctcgtgtaatgtgaaaaattctatcaaatacatcaggatgcccg 3914022
Query: 249 tagtg 253
|||||
Sbjct: 3914023 tagtg 3914027
Score = 61.9 bits (31), Expect = 4e-007
Identities = 82/99 (82%)
Strand = Plus / Plus
Query: 1 acacatctcggctgagaacttgctcaccattgcctccagcaactttcccctcaaatagtg 60
||||||||| ||| | |||||| ||||| || || || || |||||||| || || ||||
Sbjct: 620940 acacatctctgcttaaaacttgttcaccgttaccaccggctactttcccttcgaaaagtg 620999
Query: 61 caatttggttcaagccaacatcacgccctttccccacct 99
| ||||||||||| |||||||| || |||||||| ||||
Sbjct: 621000 ctatttggttcaaaccaacatctcgtcctttcccaacct 621038
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
complete sequence
Length = 30731886
Score = 131 bits (66), Expect = 5e-028
Identities = 99/110 (90%)
Strand = Plus / Plus
Query: 153 gcatatatatcttcgcttatattaatcactcgagacgccttgctaatgccacctcgggtt 212
|||||||||||||| |||||||||||||| | || || ||||| |||||||||| ||||
Sbjct: 729551 gcatatatatcttcacttatattaatcaccccggatgctttgcttatgccacctctggtt 729610
Query: 213 atgtgaaatatccgatcaaaaacatcaggatgtccatagtgcattcgaac 262
|| |||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 729611 atatgaaatatgcgatcaaaaacatcaggatgtccataatgcattcgaac 729660
Score = 109 bits (55), Expect = 2e-021
Identities = 76/83 (91%)
Strand = Plus / Plus
Query: 264 ttgaggtaagcaagaacacgttgccccaaagtaacaaaactagtctcctgtttcgacata 323
||||||||||||||||||||||||||||||||||||||||| || ||||| || ||||||
Sbjct: 729793 ttgaggtaagcaagaacacgttgccccaaagtaacaaaacttgtttcctggttagacata 729852
Query: 324 aatgacgccagcgaagagacact 346
||||| || |||||||| |||||
Sbjct: 729853 aatgatgcaagcgaagaaacact 729875
Score = 85.7 bits (43), Expect = 3e-014
Identities = 101/121 (83%)
Strand = Plus / Plus
Query: 469 cctgattcatatcgatcgtctgaactgcatctcctcgagtgaagattatggcatggtttt 528
|||||||||| || || ||||| | |||||||||||||||||| || || |||||||| |
Sbjct: 730785 cctgattcatgtcaattgtctgtattgcatctcctcgagtgaatataatagcatggttct 730844
Query: 529 ggttctcaggtntgccttcaccnagcttggggttcccaggcaatttaatgcagtatattt 588
| || |||||| | || || || |||||||| || ||||||| ||||||| |||||||||
Sbjct: 730845 gattttcaggttttccctcgccgagcttgggattaccaggcagtttaatggagtatattt 730904
Query: 589 c 589
|
Sbjct: 730905 c 730905
Score = 83.8 bits (42), Expect = 1e-013
Identities = 51/54 (94%)
Strand = Plus / Plus
Query: 418 gaaattcttcaagtaaatttctcattttcattgcttcctccaagtagttatcct 471
|||| |||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 730030 gaaactcttcaagtaaattcctcattttcattgcttcctctaagtagttatcct 730083
Score = 73.8 bits (37), Expect = 1e-010
Identities = 49/53 (92%)
Strand = Plus / Plus
Query: 96 acctggatatattcatggtgtgtgatgttcccttggcgcaaagtcgaattgaa 148
|||||||||||||||||||||||||| || || ||||||| ||||||||||||
Sbjct: 729062 acctggatatattcatggtgtgtgatatttccctggcgcagagtcgaattgaa 729114
Score = 65.9 bits (33), Expect = 3e-008
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 189 gccttgctaatgccacctcgggttatgtgaaatatccgatcaaaaacatcaggatgtcca 248
|||||||||||||||||||| || |||||||| || | |||||| ||||||||||| ||
Sbjct: 4081384 gccttgctaatgccacctcgtgtaatgtgaaaaattctatcaaatacatcaggatgcccg 4081443
Query: 249 tagtg 253
|||||
Sbjct: 4081444 tagtg 4081448
Score = 61.9 bits (31), Expect = 4e-007
Identities = 82/99 (82%)
Strand = Plus / Plus
Query: 1 acacatctcggctgagaacttgctcaccattgcctccagcaactttcccctcaaatagtg 60
||||||||| ||| | |||||| ||||| || || || || |||||||| || || ||||
Sbjct: 728544 acacatctctgcttaaaacttgttcaccgttaccaccggctactttcccttcgaaaagtg 728603
Query: 61 caatttggttcaagccaacatcacgccctttccccacct 99
| ||||||||||| |||||||| || |||||||| ||||
Sbjct: 728604 ctatttggttcaaaccaacatctcgtcctttcccaacct 728642
>gb|CB671521.1|CB671521 OSJNEe05C09.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe05C09 5', mRNA sequence
Length = 838
Score = 127 bits (64), Expect = 9e-027
Identities = 279/350 (79%), Gaps = 3/350 (0%)
Strand = Plus / Minus
Query: 9 cggctgagaacttgctcaccattgcctccagcaactttcccctcaaatagtgcaatttgg 68
|||||||| |||||||||||||| |||||||||||||| || || || |||||||| ||
Sbjct: 693 cggctgagcacttgctcaccatttcctccagcaacttttccttcgaacagtgcaatctga 634
Query: 69 ttcaagccaacatcacgccctttccccacctggatatattcatggtgtgtgatgttccct 128
|| | ||||| || | || || || ||||| ||||||||||| || || |||||||||
Sbjct: 633 ttaagaccaacgtctcttccctttccaacctgaatatattcatgatgagttatgttccct 574
Query: 129 tggcgcaaagtcgaattgaacccggcatatatatcttcgcttatattaatcactcgagac 188
||||| ||| || |||||||| ||||| ||||| || || ||||| || || || ||
Sbjct: 573 aagcgcagagttgagttgaaccctgcataaatatcctcactgatattgatgacacgggag 514
Query: 189 gccttgctaatgccacctcgggttatgtgaaatatccgatcaaaaacatcaggatgtcca 248
||||| || || ||||| | ||||| ||||| || | |||||||||||| ||||| |||
Sbjct: 513 gccttacttattccacccctcgttatatgaaaaattctatcaaaaacatctggatggcca 454
Query: 249 tagtgcattcgaactttgaggtaa---gcaagaacacgttgccccaaagtaacaaaacta 305
|| ||||||| ||||| || | || |||||||| || ||||| || |||||||||
Sbjct: 453 taatgcattcttactttcagtggattggccagaacacgctgtcccaatgtgacaaaacta 394
Query: 306 gtctcctgtttcgacataaatgacgccagcgaagagacactccccgtgaa 355
|| ||||| || |||||||| || ||||||||||| ||||| ||||||||
Sbjct: 393 gtttcctgattggacataaacgaggccagcgaagaaacacttcccgtgaa 344
Score = 83.8 bits (42), Expect = 1e-013
Identities = 118/144 (81%)
Strand = Plus / Minus
Query: 435 tttctcattttcattgcttcctccaagtagttatcctgattcatatcgatcgtctgaact 494
||||||||||| | ||| ||||| || |||||||||||||||||||| || || || |||
Sbjct: 273 tttctcattttgagtgcctcctcaaaatagttatcctgattcatatcaatggtttgcact 214
Query: 495 gcatctcctcgagtgaagattatggcatggttttggttctcaggtntgccttcaccnagc 554
|||| ||| || ||||| ||||||||||| |||||||| || || | || ||||| |||
Sbjct: 213 gcatttccacgggtgaatattatggcatgattttggttttctggcttcccctcacccagc 154
Query: 555 ttggggttcccaggcaatttaatg 578
|| || |||||||||||||||
Sbjct: 153 ttaaaattgccaggcaatttaatg 130
>dbj|AK069531.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023020O14, full
insert sequence
Length = 2087
Score = 127 bits (64), Expect = 9e-027
Identities = 279/350 (79%), Gaps = 3/350 (0%)
Strand = Plus / Minus
Query: 9 cggctgagaacttgctcaccattgcctccagcaactttcccctcaaatagtgcaatttgg 68
|||||||| |||||||||||||| |||||||||||||| || || || |||||||| ||
Sbjct: 482 cggctgagcacttgctcaccatttcctccagcaacttttccttcgaacagtgcaatctga 423
Query: 69 ttcaagccaacatcacgccctttccccacctggatatattcatggtgtgtgatgttccct 128
|| | ||||| || | || || || ||||| ||||||||||| || || |||||||||
Sbjct: 422 ttaagaccaacgtctcttccctttccaacctgaatatattcatgatgagttatgttccct 363
Query: 129 tggcgcaaagtcgaattgaacccggcatatatatcttcgcttatattaatcactcgagac 188
||||| ||| || |||||||| ||||| ||||| || || ||||| || || || ||
Sbjct: 362 aagcgcagagttgagttgaaccctgcataaatatcctcactgatattgatgacacgggag 303
Query: 189 gccttgctaatgccacctcgggttatgtgaaatatccgatcaaaaacatcaggatgtcca 248
||||| || || ||||| | ||||| ||||| || | |||||||||||| ||||| |||
Sbjct: 302 gccttacttattccacccctcgttatatgaaaaattctatcaaaaacatctggatggcca 243
Query: 249 tagtgcattcgaactttgaggtaa---gcaagaacacgttgccccaaagtaacaaaacta 305
|| ||||||| ||||| || | || |||||||| || ||||| || |||||||||
Sbjct: 242 taatgcattcttactttcagtggattggccagaacacgctgtcccaatgtgacaaaacta 183
Query: 306 gtctcctgtttcgacataaatgacgccagcgaagagacactccccgtgaa 355
|| ||||| || |||||||| || ||||||||||| ||||| ||||||||
Sbjct: 182 gtttcctgattggacataaacgaggccagcgaagaaacacttcccgtgaa 133
Score = 54.0 bits (27), Expect = 1e-004
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 435 tttctcattttcattgcttcctccaagtagttatcctgattcatatc 481
||||||||||| | ||| ||||| || ||||||||||||||||||||
Sbjct: 62 tttctcattttgagtgcctcctcaaaatagttatcctgattcatatc 16
>ref|NM_187562.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 6168
Score = 127 bits (64), Expect = 9e-027
Identities = 279/350 (79%), Gaps = 3/350 (0%)
Strand = Plus / Minus
Query: 9 cggctgagaacttgctcaccattgcctccagcaactttcccctcaaatagtgcaatttgg 68
|||||||| |||||||||||||| |||||||||||||| || || || |||||||| ||
Sbjct: 3512 cggctgagcacttgctcaccatttcctccagcaacttttccttcgaacagtgcaatctga 3453
Query: 69 ttcaagccaacatcacgccctttccccacctggatatattcatggtgtgtgatgttccct 128
|| | ||||| || | || || || ||||| ||||||||||| || || |||||||||
Sbjct: 3452 ttaagaccaacgtctcttccctttccaacctgaatatattcatgatgagttatgttccct 3393
Query: 129 tggcgcaaagtcgaattgaacccggcatatatatcttcgcttatattaatcactcgagac 188
||||| ||| || |||||||| ||||| ||||| || || ||||| || || || ||
Sbjct: 3392 aagcgcagagttgagttgaaccctgcataaatatcctcactgatattgatgacacgggag 3333
Query: 189 gccttgctaatgccacctcgggttatgtgaaatatccgatcaaaaacatcaggatgtcca 248
||||| || || ||||| | ||||| ||||| || | |||||||||||| ||||| |||
Sbjct: 3332 gccttacttattccacccctcgttatatgaaaaattctatcaaaaacatctggatggcca 3273
Query: 249 tagtgcattcgaactttgaggtaa---gcaagaacacgttgccccaaagtaacaaaacta 305
|| ||||||| ||||| || | || |||||||| || ||||| || |||||||||
Sbjct: 3272 taatgcattcttactttcagtggattggccagaacacgctgtcccaatgtgacaaaacta 3213
Query: 306 gtctcctgtttcgacataaatgacgccagcgaagagacactccccgtgaa 355
|| ||||| || |||||||| || ||||||||||| ||||| ||||||||
Sbjct: 3212 gtttcctgattggacataaacgaggccagcgaagaaacacttcccgtgaa 3163
Score = 83.8 bits (42), Expect = 1e-013
Identities = 118/144 (81%)
Strand = Plus / Minus
Query: 435 tttctcattttcattgcttcctccaagtagttatcctgattcatatcgatcgtctgaact 494
||||||||||| | ||| ||||| || |||||||||||||||||||| || || || |||
Sbjct: 3092 tttctcattttgagtgcctcctcaaaatagttatcctgattcatatcaatggtttgcact 3033
Query: 495 gcatctcctcgagtgaagattatggcatggttttggttctcaggtntgccttcaccnagc 554
|||| ||| || ||||| ||||||||||| |||||||| || || | || ||||| |||
Sbjct: 3032 gcatttccacgggtgaatattatggcatgattttggttttctggcttcccctcacccagc 2973
Query: 555 ttggggttcccaggcaatttaatg 578
|| || |||||||||||||||
Sbjct: 2972 ttaaaattgccaggcaatttaatg 2949
>gb|CF307470.1|CF307470 HDA1--06-M20.g1 OsHDAC1-overexpressing transgenic rice lambda phage
cDNA library I (HDA1) Oryza sativa (japonica
cultivar-group) cDNA clone HDA1--06-M20, mRNA sequence
Length = 542
Score = 91.7 bits (46), Expect = 5e-016
Identities = 209/263 (79%), Gaps = 3/263 (1%)
Strand = Plus / Minus
Query: 96 acctggatatattcatggtgtgtgatgttcccttggcgcaaagtcgaattgaacccggca 155
||||| ||||||||||| || || ||||||| | ||||| ||| || |||||||| |||
Sbjct: 534 acctgaatatattcatgatgagttatgttccntaagcgcagagttgagttgaaccctgca 475
Query: 156 tatatatcttcgcttatattaatcactcgagacgccttgctaatgccacctcgggttatg 215
|| ||||| || || ||||| || || || || ||||| || || ||||| | |||||
Sbjct: 474 taaatatcctcactgatattgatgacacgggaggccttacttattccacccctcgttata 415
Query: 216 tgaaatatccgatcaaaaacatcaggatgtccatagtgcattcgaactttgaggtaa--- 272
||||| || | |||||||||||| ||||| ||||| ||||||| ||||| || |
Sbjct: 414 tgaaaaattctatcaaaaacatctggatggccataatgcattcttactttcagtggattg 355
Query: 273 gcaagaacacgttgccccaaagtaacaaaactagtctcctgtttcgacataaatgacgcc 332
|| |||||||| || ||||| || ||||||||||| ||||| || |||||||| || |||
Sbjct: 354 gccagaacacgctgtcccaatgtgacaaaactagtttcctgattggacataaacgaggcc 295
Query: 333 agcgaagagacactccccgtgaa 355
|||||||| ||||| ||||||||
Sbjct: 294 agcgaagaaacacttcccgtgaa 272
Score = 60.0 bits (30), Expect = 2e-006
Identities = 115/144 (79%)
Strand = Plus / Minus
Query: 435 tttctcattttcattgcttcctccaagtagttatcctgattcatatcgatcgtctgaact 494
||||||||| | | ||| ||||| || |||||||||||||||||||| || | | |||
Sbjct: 201 tttctcattatgagtgcctcctcaaaatagttatcctgattcatatcaatggaaagcact 142
Query: 495 gcatctcctcgagtgaagattatggcatggttttggttctcaggtntgccttcaccnagc 554
|||| ||| || ||||| ||||||||||| |||||||| || || | || ||||| |||
Sbjct: 141 gcatttccacgggtgaatattatggcatgattttggttttctggcttcccctcacccagc 82
Query: 555 ttggggttcccaggcaatttaatg 578
|| || |||||||||||||||
Sbjct: 81 ttaaaattgccaggcaatttaatg 58
>gb|CB668255.1|CB668255 OSJNEd16A12.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd16A12 3', mRNA sequence
Length = 871
Score = 75.8 bits (38), Expect = 3e-011
Identities = 89/108 (82%)
Strand = Plus / Plus
Query: 521 atggttttggttctcaggtntgccttcaccnagcttggggttcccaggcaatttaatgca 580
|||||| || || |||||| | || || || |||||||| || ||||||| ||||||| |
Sbjct: 41 atggttctgattttcaggttttccctcgccgagcttgggattaccaggcagtttaatgga 100
Query: 581 gtatatttcttggtctttgccatgaacatcannctncacnagcttgga 628
|||||||||||| ||||| |||||||||||| || || ||||||||
Sbjct: 101 gtatatttcttgatcttttccatgaacatcagccttaactagcttgga 148
>dbj|AG208568.1| Oryza sativa (japonica cultivar-group) DNA, clone:NE3534_0_403_1A,
3' flanking sequence of Tos17 insertion in rice strain
NE3534, genomic survey sequence
Length = 505
Score = 65.9 bits (33), Expect = 3e-008
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 189 gccttgctaatgccacctcgggttatgtgaaatatccgatcaaaaacatcaggatgtcca 248
|||||||||||||||||||| || |||||||| || | |||||| ||||||||||| ||
Sbjct: 364 gccttgctaatgccacctcgtgtaatgtgaaaaattctatcaaatacatcaggatgcccg 423
Query: 249 tagtg 253
|||||
Sbjct: 424 tagtg 428
>dbj|AG208570.1| Oryza sativa (japonica cultivar-group) DNA, clone:NE3516_0_402_1A,
3' flanking sequence of Tos17 insertion in rice strain
NE3516, genomic survey sequence
Length = 505
Score = 65.9 bits (33), Expect = 3e-008
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 189 gccttgctaatgccacctcgggttatgtgaaatatccgatcaaaaacatcaggatgtcca 248
|||||||||||||||||||| || |||||||| || | |||||| ||||||||||| ||
Sbjct: 364 gccttgctaatgccacctcgtgtaatgtgaaaaattctatcaaatacatcaggatgcccg 423
Query: 249 tagtg 253
|||||
Sbjct: 424 tagtg 428
>dbj|AG210242.1| Oryza sativa (japonica cultivar-group) DNA, clone:NF0030_0_131_1A,
3' flanking sequence of Tos17 insertion in rice strain
NF0030, genomic survey sequence
Length = 581
Score = 65.9 bits (33), Expect = 3e-008
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 189 gccttgctaatgccacctcgggttatgtgaaatatccgatcaaaaacatcaggatgtcca 248
|||||||||||||||||||| || |||||||| || | |||||| ||||||||||| ||
Sbjct: 377 gccttgctaatgccacctcgtgtaatgtgaaaaattctatcaaatacatcaggatgcccg 436
Query: 249 tagtg 253
|||||
Sbjct: 437 tagtg 441
>dbj|AG211136.1| Oryza sativa (japonica cultivar-group) DNA, clone:NF3711_0_102_1A,
3' flanking sequence of Tos17 insertion in rice strain
NF3711, genomic survey sequence
Length = 573
Score = 65.9 bits (33), Expect = 3e-008
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 189 gccttgctaatgccacctcgggttatgtgaaatatccgatcaaaaacatcaggatgtcca 248
|||||||||||||||||||| || |||||||| || | |||||| ||||||||||| ||
Sbjct: 175 gccttgctaatgccacctcgtgtaatgtgaaaaattctatcaaatacatcaggatgcccg 234
Query: 249 tagtg 253
|||||
Sbjct: 235 tagtg 239
>dbj|AG020899.1| Oryza sativa (japonica cultivar-group) DNA, clone:H0205_0_01_1A, 3'
flanking sequence of Tos17 insertion in rice strain
H0205, genomic survey sequence
Length = 799
Score = 65.9 bits (33), Expect = 3e-008
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 189 gccttgctaatgccacctcgggttatgtgaaatatccgatcaaaaacatcaggatgtcca 248
|||||||||||||||||||| || |||||||| || | |||||| ||||||||||| ||
Sbjct: 508 gccttgctaatgccacctcgtgtaatgtgaaaaattctatcaaatacatcaggatgcccg 567
Query: 249 tagtg 253
|||||
Sbjct: 568 tagtg 572
>dbj|AP003454.1| Oryza sativa (japonica cultivar-group) chromosome 6 clone P0499E08, ***
SEQUENCING IN PROGRESS ***
Length = 85150
Score = 65.9 bits (33), Expect = 3e-008
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 189 gccttgctaatgccacctcgggttatgtgaaatatccgatcaaaaacatcaggatgtcca 248
|||||||||||||||||||| || |||||||| || | |||||| ||||||||||| ||
Sbjct: 42174 gccttgctaatgccacctcgtgtaatgtgaaaaattctatcaaatacatcaggatgcccg 42233
Query: 249 tagtg 253
|||||
Sbjct: 42234 tagtg 42238
>dbj|AK100271.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023069L11, full
insert sequence
Length = 2442
Score = 65.9 bits (33), Expect = 3e-008
Identities = 57/65 (87%)
Strand = Plus / Minus
Query: 189 gccttgctaatgccacctcgggttatgtgaaatatccgatcaaaaacatcaggatgtcca 248
|||||||||||||||||||| || |||||||| || | |||||| ||||||||||| ||
Sbjct: 1804 gccttgctaatgccacctcgtgtaatgtgaaaaattctatcaaatacatcaggatgcccg 1745
Query: 249 tagtg 253
|||||
Sbjct: 1744 tagtg 1740
>gb|AACV01013162.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg013162, whole
genome shotgun sequence
Length = 37554
Score = 65.9 bits (33), Expect = 3e-008
Identities = 57/65 (87%)
Strand = Plus / Minus
Query: 189 gccttgctaatgccacctcgggttatgtgaaatatccgatcaaaaacatcaggatgtcca 248
|||||||||||||||||||| || |||||||| || | |||||| ||||||||||| ||
Sbjct: 35684 gccttgctaatgccacctcgtgtaatgtgaaaaattctatcaaatacatcaggatgcccg 35625
Query: 249 tagtg 253
|||||
Sbjct: 35624 tagtg 35620
>dbj|AP007226.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OSJNBb0036B04
Length = 136159
Score = 65.9 bits (33), Expect = 3e-008
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 189 gccttgctaatgccacctcgggttatgtgaaatatccgatcaaaaacatcaggatgtcca 248
|||||||||||||||||||| || |||||||| || | |||||| ||||||||||| ||
Sbjct: 14643 gccttgctaatgccacctcgtgtaatgtgaaaaattctatcaaatacatcaggatgcccg 14702
Query: 249 tagtg 253
|||||
Sbjct: 14703 tagtg 14707
>dbj|AP007257.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OSJNBb0019L07
Length = 131650
Score = 65.9 bits (33), Expect = 3e-008
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 189 gccttgctaatgccacctcgggttatgtgaaatatccgatcaaaaacatcaggatgtcca 248
|||||||||||||||||||| || |||||||| || | |||||| ||||||||||| ||
Sbjct: 125037 gccttgctaatgccacctcgtgtaatgtgaaaaattctatcaaatacatcaggatgcccg 125096
Query: 249 tagtg 253
|||||
Sbjct: 125097 tagtg 125101
>gb|AC118980.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1263H11,
complete sequence
Length = 126827
Score = 63.9 bits (32), Expect = 1e-007
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 9 cggctgagaacttgctcaccattgcctccagcaactttcccctcaaatagtgcaat 64
|||||||| |||||||||||||| |||||||||||||| || || || ||||||||
Sbjct: 69765 cggctgagcacttgctcaccatttcctccagcaacttttccttcgaacagtgcaat 69710
Score = 61.9 bits (31), Expect = 4e-007
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 276 agaacacgttgccccaaagtaacaaaactagtctcctgtttcgacataaatgacgccagc 335
|||||||| || ||||| || ||||||||||| ||||| || |||||||| || ||||||
Sbjct: 67999 agaacacgctgtcccaatgtgacaaaactagtttcctgattggacataaacgaggccagc 67940
Query: 336 gaagagacact 346
||||| |||||
Sbjct: 67939 gaagaaacact 67929
Score = 56.0 bits (28), Expect = 3e-005
Identities = 89/110 (80%)
Strand = Plus / Minus
Query: 469 cctgattcatatcgatcgtctgaactgcatctcctcgagtgaagattatggcatggtttt 528
||||||||||||| || || || ||||||| ||| || ||||| ||||||||||| ||||
Sbjct: 67280 cctgattcatatcaatggtttgcactgcatttccacgggtgaatattatggcatgatttt 67221
Query: 529 ggttctcaggtntgccttcaccnagcttggggttcccaggcaatttaatg 578
|||| || || | || ||||| ||||| || |||||||||||||||
Sbjct: 67220 ggttttctggcttcccctcacccagcttaaaattgccaggcaatttaatg 67171
Score = 42.1 bits (21), Expect = 0.39
Identities = 42/49 (85%)
Strand = Plus / Minus
Query: 210 gttatgtgaaatatccgatcaaaaacatcaggatgtccatagtgcattc 258
||||| ||||| || | |||||||||||| ||||| ||||| |||||||
Sbjct: 68152 gttatatgaaaaattctatcaaaaacatctggatggccataatgcattc 68104
>gb|AACV01005773.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg005773, whole
genome shotgun sequence
Length = 82514
Score = 63.9 bits (32), Expect = 1e-007
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 9 cggctgagaacttgctcaccattgcctccagcaactttcccctcaaatagtgcaat 64
|||||||| |||||||||||||| |||||||||||||| || || || ||||||||
Sbjct: 21792 cggctgagcacttgctcaccatttcctccagcaacttttccttcgaacagtgcaat 21737
Score = 61.9 bits (31), Expect = 4e-007
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 276 agaacacgttgccccaaagtaacaaaactagtctcctgtttcgacataaatgacgccagc 335
|||||||| || ||||| || ||||||||||| ||||| || |||||||| || ||||||
Sbjct: 20026 agaacacgctgtcccaatgtgacaaaactagtttcctgattggacataaacgaggccagc 19967
Query: 336 gaagagacact 346
||||| |||||
Sbjct: 19966 gaagaaacact 19956
Score = 56.0 bits (28), Expect = 3e-005
Identities = 89/110 (80%)
Strand = Plus / Minus
Query: 469 cctgattcatatcgatcgtctgaactgcatctcctcgagtgaagattatggcatggtttt 528
||||||||||||| || || || ||||||| ||| || ||||| ||||||||||| ||||
Sbjct: 19307 cctgattcatatcaatggtttgcactgcatttccacgggtgaatattatggcatgatttt 19248
Query: 529 ggttctcaggtntgccttcaccnagcttggggttcccaggcaatttaatg 578
|||| || || | || ||||| ||||| || |||||||||||||||
Sbjct: 19247 ggttttctggcttcccctcacccagcttaaaattgccaggcaatttaatg 19198
Score = 42.1 bits (21), Expect = 0.39
Identities = 42/49 (85%)
Strand = Plus / Minus
Query: 210 gttatgtgaaatatccgatcaaaaacatcaggatgtccatagtgcattc 258
||||| ||||| || | |||||||||||| ||||| ||||| |||||||
Sbjct: 20179 gttatatgaaaaattctatcaaaaacatctggatggccataatgcattc 20131
>ref|NT_107183.1| Oryza sativa (japonica cultivar-group)
Length = 1680144
Score = 63.9 bits (32), Expect = 1e-007
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 9 cggctgagaacttgctcaccattgcctccagcaactttcccctcaaatagtgcaat 64
|||||||| |||||||||||||| |||||||||||||| || || || ||||||||
Sbjct: 1049548 cggctgagcacttgctcaccatttcctccagcaacttttccttcgaacagtgcaat 1049493
Score = 61.9 bits (31), Expect = 4e-007
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 276 agaacacgttgccccaaagtaacaaaactagtctcctgtttcgacataaatgacgccagc 335
|||||||| || ||||| || ||||||||||| ||||| || |||||||| || ||||||
Sbjct: 1047782 agaacacgctgtcccaatgtgacaaaactagtttcctgattggacataaacgaggccagc 1047723
Query: 336 gaagagacact 346
||||| |||||
Sbjct: 1047722 gaagaaacact 1047712
Score = 56.0 bits (28), Expect = 3e-005
Identities = 89/110 (80%)
Strand = Plus / Minus
Query: 469 cctgattcatatcgatcgtctgaactgcatctcctcgagtgaagattatggcatggtttt 528
||||||||||||| || || || ||||||| ||| || ||||| ||||||||||| ||||
Sbjct: 1047063 cctgattcatatcaatggtttgcactgcatttccacgggtgaatattatggcatgatttt 1047004
Query: 529 ggttctcaggtntgccttcaccnagcttggggttcccaggcaatttaatg 578
|||| || || | || ||||| ||||| || |||||||||||||||
Sbjct: 1047003 ggttttctggcttcccctcacccagcttaaaattgccaggcaatttaatg 1046954
Score = 42.1 bits (21), Expect = 0.39
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 423 tcttcaagtaaatttctcattttcattgcttcctccaagtagttatcct 471
|||| ||| |||||||||||||| | |||||| |||| ||||||||||
Sbjct: 1565207 tcttgaagcaaatttctcattttaagtgcttcttccatatagttatcct 1565255
Score = 42.1 bits (21), Expect = 0.39
Identities = 42/49 (85%)
Strand = Plus / Minus
Query: 210 gttatgtgaaatatccgatcaaaaacatcaggatgtccatagtgcattc 258
||||| ||||| || | |||||||||||| ||||| ||||| |||||||
Sbjct: 1047935 gttatatgaaaaattctatcaaaaacatctggatggccataatgcattc 1047887
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
scaffold, whole genome shotgun sequence
Length = 13858245
Score = 63.9 bits (32), Expect = 1e-007
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 9 cggctgagaacttgctcaccattgcctccagcaactttcccctcaaatagtgcaat 64
|||||||| |||||||||||||| |||||||||||||| || || || ||||||||
Sbjct: 1047727 cggctgagcacttgctcaccatttcctccagcaacttttccttcgaacagtgcaat 1047672
Score = 61.9 bits (31), Expect = 4e-007
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 276 agaacacgttgccccaaagtaacaaaactagtctcctgtttcgacataaatgacgccagc 335
|||||||| || ||||| || ||||||||||| ||||| || |||||||| || ||||||
Sbjct: 1045961 agaacacgctgtcccaatgtgacaaaactagtttcctgattggacataaacgaggccagc 1045902
Query: 336 gaagagacact 346
||||| |||||
Sbjct: 1045901 gaagaaacact 1045891
Score = 56.0 bits (28), Expect = 3e-005
Identities = 89/110 (80%)
Strand = Plus / Minus
Query: 469 cctgattcatatcgatcgtctgaactgcatctcctcgagtgaagattatggcatggtttt 528
||||||||||||| || || || ||||||| ||| || ||||| ||||||||||| ||||
Sbjct: 1045242 cctgattcatatcaatggtttgcactgcatttccacgggtgaatattatggcatgatttt 1045183
Query: 529 ggttctcaggtntgccttcaccnagcttggggttcccaggcaatttaatg 578
|||| || || | || ||||| ||||| || |||||||||||||||
Sbjct: 1045182 ggttttctggcttcccctcacccagcttaaaattgccaggcaatttaatg 1045133
Score = 42.1 bits (21), Expect = 0.39
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 423 tcttcaagtaaatttctcattttcattgcttcctccaagtagttatcct 471
|||| ||| |||||||||||||| | |||||| |||| ||||||||||
Sbjct: 1571263 tcttgaagcaaatttctcattttaagtgcttcttccatatagttatcct 1571311
Score = 42.1 bits (21), Expect = 0.39
Identities = 42/49 (85%)
Strand = Plus / Minus
Query: 210 gttatgtgaaatatccgatcaaaaacatcaggatgtccatagtgcattc 258
||||| ||||| || | |||||||||||| ||||| ||||| |||||||
Sbjct: 1046114 gttatatgaaaaattctatcaaaaacatctggatggccataatgcattc 1046066
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 63.9 bits (32), Expect = 1e-007
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 9 cggctgagaacttgctcaccattgcctccagcaactttcccctcaaatagtgcaat 64
|||||||| |||||||||||||| |||||||||||||| || || || ||||||||
Sbjct: 1240089 cggctgagcacttgctcaccatttcctccagcaacttttccttcgaacagtgcaat 1240034
Score = 61.9 bits (31), Expect = 4e-007
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 276 agaacacgttgccccaaagtaacaaaactagtctcctgtttcgacataaatgacgccagc 335
|||||||| || ||||| || ||||||||||| ||||| || |||||||| || ||||||
Sbjct: 1238323 agaacacgctgtcccaatgtgacaaaactagtttcctgattggacataaacgaggccagc 1238264
Query: 336 gaagagacact 346
||||| |||||
Sbjct: 1238263 gaagaaacact 1238253
Score = 56.0 bits (28), Expect = 3e-005
Identities = 89/110 (80%)
Strand = Plus / Minus
Query: 469 cctgattcatatcgatcgtctgaactgcatctcctcgagtgaagattatggcatggtttt 528
||||||||||||| || || || ||||||| ||| || ||||| ||||||||||| ||||
Sbjct: 1237604 cctgattcatatcaatggtttgcactgcatttccacgggtgaatattatggcatgatttt 1237545
Query: 529 ggttctcaggtntgccttcaccnagcttggggttcccaggcaatttaatg 578
|||| || || | || ||||| ||||| || |||||||||||||||
Sbjct: 1237544 ggttttctggcttcccctcacccagcttaaaattgccaggcaatttaatg 1237495
Score = 42.1 bits (21), Expect = 0.39
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 423 tcttcaagtaaatttctcattttcattgcttcctccaagtagttatcct 471
|||| ||| |||||||||||||| | |||||| |||| ||||||||||
Sbjct: 1763625 tcttgaagcaaatttctcattttaagtgcttcttccatatagttatcct 1763673
Score = 42.1 bits (21), Expect = 0.39
Identities = 42/49 (85%)
Strand = Plus / Minus
Query: 210 gttatgtgaaatatccgatcaaaaacatcaggatgtccatagtgcattc 258
||||| ||||| || | |||||||||||| ||||| ||||| |||||||
Sbjct: 1238476 gttatatgaaaaattctatcaaaaacatctggatggccataatgcattc 1238428
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 63.9 bits (32), Expect = 1e-007
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 9 cggctgagaacttgctcaccattgcctccagcaactttcccctcaaatagtgcaat 64
|||||||| |||||||||||||| |||||||||||||| || || || ||||||||
Sbjct: 1049548 cggctgagcacttgctcaccatttcctccagcaacttttccttcgaacagtgcaat 1049493
Score = 61.9 bits (31), Expect = 4e-007
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 276 agaacacgttgccccaaagtaacaaaactagtctcctgtttcgacataaatgacgccagc 335
|||||||| || ||||| || ||||||||||| ||||| || |||||||| || ||||||
Sbjct: 1047782 agaacacgctgtcccaatgtgacaaaactagtttcctgattggacataaacgaggccagc 1047723
Query: 336 gaagagacact 346
||||| |||||
Sbjct: 1047722 gaagaaacact 1047712
Score = 56.0 bits (28), Expect = 3e-005
Identities = 89/110 (80%)
Strand = Plus / Minus
Query: 469 cctgattcatatcgatcgtctgaactgcatctcctcgagtgaagattatggcatggtttt 528
||||||||||||| || || || ||||||| ||| || ||||| ||||||||||| ||||
Sbjct: 1047063 cctgattcatatcaatggtttgcactgcatttccacgggtgaatattatggcatgatttt 1047004
Query: 529 ggttctcaggtntgccttcaccnagcttggggttcccaggcaatttaatg 578
|||| || || | || ||||| ||||| || |||||||||||||||
Sbjct: 1047003 ggttttctggcttcccctcacccagcttaaaattgccaggcaatttaatg 1046954
Score = 42.1 bits (21), Expect = 0.39
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 423 tcttcaagtaaatttctcattttcattgcttcctccaagtagttatcct 471
|||| ||| |||||||||||||| | |||||| |||| ||||||||||
Sbjct: 1565207 tcttgaagcaaatttctcattttaagtgcttcttccatatagttatcct 1565255
Score = 42.1 bits (21), Expect = 0.39
Identities = 42/49 (85%)
Strand = Plus / Minus
Query: 210 gttatgtgaaatatccgatcaaaaacatcaggatgtccatagtgcattc 258
||||| ||||| || | |||||||||||| ||||| ||||| |||||||
Sbjct: 1047935 gttatatgaaaaattctatcaaaaacatctggatggccataatgcattc 1047887
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 63.9 bits (32), Expect = 1e-007
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 9 cggctgagaacttgctcaccattgcctccagcaactttcccctcaaatagtgcaat 64
|||||||| |||||||||||||| |||||||||||||| || || || ||||||||
Sbjct: 1049550 cggctgagcacttgctcaccatttcctccagcaacttttccttcgaacagtgcaat 1049495
Score = 61.9 bits (31), Expect = 4e-007
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 276 agaacacgttgccccaaagtaacaaaactagtctcctgtttcgacataaatgacgccagc 335
|||||||| || ||||| || ||||||||||| ||||| || |||||||| || ||||||
Sbjct: 1047784 agaacacgctgtcccaatgtgacaaaactagtttcctgattggacataaacgaggccagc 1047725
Query: 336 gaagagacact 346
||||| |||||
Sbjct: 1047724 gaagaaacact 1047714
Score = 56.0 bits (28), Expect = 3e-005
Identities = 89/110 (80%)
Strand = Plus / Minus
Query: 469 cctgattcatatcgatcgtctgaactgcatctcctcgagtgaagattatggcatggtttt 528
||||||||||||| || || || ||||||| ||| || ||||| ||||||||||| ||||
Sbjct: 1047065 cctgattcatatcaatggtttgcactgcatttccacgggtgaatattatggcatgatttt 1047006
Query: 529 ggttctcaggtntgccttcaccnagcttggggttcccaggcaatttaatg 578
|||| || || | || ||||| ||||| || |||||||||||||||
Sbjct: 1047005 ggttttctggcttcccctcacccagcttaaaattgccaggcaatttaatg 1046956
Score = 42.1 bits (21), Expect = 0.39
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 423 tcttcaagtaaatttctcattttcattgcttcctccaagtagttatcct 471
|||| ||| |||||||||||||| | |||||| |||| ||||||||||
Sbjct: 1565209 tcttgaagcaaatttctcattttaagtgcttcttccatatagttatcct 1565257
Score = 42.1 bits (21), Expect = 0.39
Identities = 42/49 (85%)
Strand = Plus / Minus
Query: 210 gttatgtgaaatatccgatcaaaaacatcaggatgtccatagtgcattc 258
||||| ||||| || | |||||||||||| ||||| ||||| |||||||
Sbjct: 1047937 gttatatgaaaaattctatcaaaaacatctggatggccataatgcattc 1047889
>dbj|AK099782.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013095O05, full
insert sequence
Length = 5774
Score = 54.0 bits (27), Expect = 1e-004
Identities = 63/75 (84%)
Strand = Plus / Minus
Query: 465 ttatcctgattcatatcgatcgtctgaactgcatctcctcgagtgaagattatggcatgg 524
|||||||| |||||||| ||||| || || ||||| ||||| ||||| || |||||||||
Sbjct: 3701 ttatcctggttcatatcaatcgtttgcacagcatcacctcgtgtgaatatgatggcatgg 3642
Query: 525 ttttggttctcaggt 539
|| || || ||||||
Sbjct: 3641 ttctgattttcaggt 3627
Score = 44.1 bits (22), Expect = 0.099
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 225 cgatcaaaaacatcaggatgtccatagtgcattcgaac 262
|||||||| ||||||||||| ||||| ||||| |||||
Sbjct: 3935 cgatcaaatacatcaggatgcccataatgcatccgaac 3898
Score = 42.1 bits (21), Expect = 0.39
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 75 ccaacatcacgccctttccccacctggatatattcatggtg 115
||||||||||| || || || ||||||||||| ||||||||
Sbjct: 4085 ccaacatcacgtcccttaccaacctggatatactcatggtg 4045
>dbj|AK120195.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013036H01, full
insert sequence
Length = 5949
Score = 54.0 bits (27), Expect = 1e-004
Identities = 63/75 (84%)
Strand = Plus / Minus
Query: 465 ttatcctgattcatatcgatcgtctgaactgcatctcctcgagtgaagattatggcatgg 524
|||||||| |||||||| ||||| || || ||||| ||||| ||||| || |||||||||
Sbjct: 3605 ttatcctggttcatatcaatcgtttgcacagcatcacctcgtgtgaatatgatggcatgg 3546
Query: 525 ttttggttctcaggt 539
|| || || ||||||
Sbjct: 3545 ttctgattttcaggt 3531
Score = 44.1 bits (22), Expect = 0.099
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 225 cgatcaaaaacatcaggatgtccatagtgcattcgaac 262
|||||||| ||||||||||| ||||| ||||| |||||
Sbjct: 3839 cgatcaaatacatcaggatgcccataatgcatccgaac 3802
Score = 42.1 bits (21), Expect = 0.39
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 75 ccaacatcacgccctttccccacctggatatattcatggtg 115
||||||||||| || || || ||||||||||| ||||||||
Sbjct: 3989 ccaacatcacgtcccttaccaacctggatatactcatggtg 3949
>dbj|AK120402.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013088I17, full
insert sequence
Length = 5396
Score = 54.0 bits (27), Expect = 1e-004
Identities = 63/75 (84%)
Strand = Plus / Minus
Query: 465 ttatcctgattcatatcgatcgtctgaactgcatctcctcgagtgaagattatggcatgg 524
|||||||| |||||||| ||||| || || ||||| ||||| ||||| || |||||||||
Sbjct: 3290 ttatcctggttcatatcaatcgtttgcacagcatcacctcgtgtgaatatgatggcatgg 3231
Query: 525 ttttggttctcaggt 539
|| || || ||||||
Sbjct: 3230 ttctgattttcaggt 3216
Score = 44.1 bits (22), Expect = 0.099
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 225 cgatcaaaaacatcaggatgtccatagtgcattcgaac 262
|||||||| ||||||||||| ||||| ||||| |||||
Sbjct: 3524 cgatcaaatacatcaggatgcccataatgcatccgaac 3487
Score = 42.1 bits (21), Expect = 0.39
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 75 ccaacatcacgccctttccccacctggatatattcatggtg 115
||||||||||| || || || ||||||||||| ||||||||
Sbjct: 3674 ccaacatcacgtcccttaccaacctggatatactcatggtg 3634
>gb|AACV01002367.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002367, whole
genome shotgun sequence
Length = 23038
Score = 54.0 bits (27), Expect = 1e-004
Identities = 63/75 (84%)
Strand = Plus / Minus
Query: 465 ttatcctgattcatatcgatcgtctgaactgcatctcctcgagtgaagattatggcatgg 524
|||||||| |||||||| ||||| || || ||||| ||||| ||||| || |||||||||
Sbjct: 11542 ttatcctggttcatatcaatcgtttgcacagcatcacctcgtgtgaatatgatggcatgg 11483
Query: 525 ttttggttctcaggt 539
|| || || ||||||
Sbjct: 11482 ttctgattttcaggt 11468
Score = 44.1 bits (22), Expect = 0.099
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 225 cgatcaaaaacatcaggatgtccatagtgcattcgaac 262
|||||||| ||||||||||| ||||| ||||| |||||
Sbjct: 11776 cgatcaaatacatcaggatgcccataatgcatccgaac 11739
Score = 42.1 bits (21), Expect = 0.39
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 75 ccaacatcacgccctttccccacctggatatattcatggtg 115
||||||||||| || || || ||||||||||| ||||||||
Sbjct: 11926 ccaacatcacgtcccttaccaacctggatatactcatggtg 11886
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 54.0 bits (27), Expect = 1e-004
Identities = 63/75 (84%)
Strand = Plus / Plus
Query: 465 ttatcctgattcatatcgatcgtctgaactgcatctcctcgagtgaagattatggcatgg 524
|||||||| |||||||| ||||| || || ||||| ||||| ||||| || |||||||||
Sbjct: 31718501 ttatcctggttcatatcaatcgtttgcacagcatcacctcgtgtgaatatgatggcatgg 31718560
Query: 525 ttttggttctcaggt 539
|| || || ||||||
Sbjct: 31718561 ttctgattttcaggt 31718575
Score = 50.1 bits (25), Expect = 0.002
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 189 gccttgctaatgccacctcgggttatgtgaaatatccgatcaaaaacatcaggatgtcca 248
|||||||||||||| |||| || |||| ||| |||| || || |||||||||||||||
Sbjct: 39190797 gccttgctaatgcctcctcttgtaatgttaaaaatcctgtcgaacacatcaggatgtcca 39190738
Query: 249 tagtg 253
|||||
Sbjct: 39190737 tagtg 39190733
Score = 50.1 bits (25), Expect = 0.002
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 189 gccttgctaatgccacctcgggttatgtgaaatatccgatcaaaaacatcaggatgtcca 248
|||||||||||||| |||| || |||| ||| |||| || || |||||||||||||||
Sbjct: 39189093 gccttgctaatgcctcctcttgtaatgttaaaaatcctgtcgaacacatcaggatgtcca 39189034
Query: 249 tagtg 253
|||||
Sbjct: 39189033 tagtg 39189029
Score = 50.1 bits (25), Expect = 0.002
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 189 gccttgctaatgccacctcgggttatgtgaaatatccgatcaaaaacatcaggatgtcca 248
|||||||||||||| |||| || |||| ||| |||| || || |||||||||||||||
Sbjct: 18760933 gccttgctaatgcctcctcttgtaatgttaaaaatcctgtcgaacacatcaggatgtcca 18760992
Query: 249 tagtg 253
|||||
Sbjct: 18760993 tagtg 18760997
Score = 48.1 bits (24), Expect = 0.006
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 519 gcatggttttggttctcaggtntgccttcaccnagctt 556
||||| ||||||||||| ||| |||||||||| |||||
Sbjct: 27683000 gcatgattttggttctctggtttgccttcaccaagctt 27683037
Score = 44.1 bits (22), Expect = 0.099
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 225 cgatcaaaaacatcaggatgtccatagtgcattcgaac 262
|||||||| ||||||||||| ||||| ||||| |||||
Sbjct: 31718267 cgatcaaatacatcaggatgcccataatgcatccgaac 31718304
Score = 44.1 bits (22), Expect = 0.099
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 276 agaacacgttgccccaaagtaacaaaactagtctcctg 313
|||||||| ||||||| |||||||||||| || |||||
Sbjct: 27682766 agaacacgctgccccagagtaacaaaacttgtttcctg 27682803
Score = 44.1 bits (22), Expect = 0.099
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 423 tcttcaagtaaatttctcattttcattgcttcctccaagtagttatcctg 472
||||| |||| |||||||||||| | ||||||||| | ||| ||||||||
Sbjct: 19382277 tcttccagtagatttctcattttaaatgcttcctcaaggtaattatcctg 19382326
Score = 44.1 bits (22), Expect = 0.099
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 75 ccaacatcacgccctttccccacctggatatattcatg 112
||||||||||| ||||| |||| ||| |||||||||||
Sbjct: 19380708 ccaacatcacgtcctttacccagctgtatatattcatg 19380745
Score = 42.1 bits (21), Expect = 0.39
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 75 ccaacatcacgccctttccccacctggatatattcatggtg 115
||||||||||| || || || ||||||||||| ||||||||
Sbjct: 31718117 ccaacatcacgtcccttaccaacctggatatactcatggtg 31718157
Score = 42.1 bits (21), Expect = 0.39
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 273 gcaagaacacgttgccccaaagtaacaaaactagtctcctgtttcgacataaa 325
|||||||||||||| || | ||||| ||||||||||| || || ||||||||
Sbjct: 19382010 gcaagaacacgttgtccaatggtaacgaaactagtctcttggtttgacataaa 19382062
>ref|NM_191270.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 5373
Score = 54.0 bits (27), Expect = 1e-004
Identities = 63/75 (84%)
Strand = Plus / Minus
Query: 465 ttatcctgattcatatcgatcgtctgaactgcatctcctcgagtgaagattatggcatgg 524
|||||||| |||||||| ||||| || || ||||| ||||| ||||| || |||||||||
Sbjct: 3566 ttatcctggttcatatcaatcgtttgcacagcatcacctcgtgtgaatatgatggcatgg 3507
Query: 525 ttttggttctcaggt 539
|| || || ||||||
Sbjct: 3506 ttctgattttcaggt 3492
Score = 44.1 bits (22), Expect = 0.099
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 225 cgatcaaaaacatcaggatgtccatagtgcattcgaac 262
|||||||| ||||||||||| ||||| ||||| |||||
Sbjct: 3800 cgatcaaatacatcaggatgcccataatgcatccgaac 3763
Score = 42.1 bits (21), Expect = 0.39
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 75 ccaacatcacgccctttccccacctggatatattcatggtg 115
||||||||||| || || || ||||||||||| ||||||||
Sbjct: 3950 ccaacatcacgtcccttaccaacctggatatactcatggtg 3910
>ref|NM_193211.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 5634
Score = 54.0 bits (27), Expect = 1e-004
Identities = 78/95 (82%)
Strand = Plus / Minus
Query: 423 tcttcaagtaaatttctcattttcattgcttcctccaagtagttatcctgattcatatcg 482
||||| |||| |||||||||||| | ||||||||| | ||| |||||||| ||||| ||
Sbjct: 3842 tcttccagtagatttctcattttaaatgcttcctcaaggtaattatcctggttcatgtca 3783
Query: 483 atcgtctgaactgcatctcctcgagtgaagattat 517
|| | |||| || ||||||| ||||||||||||
Sbjct: 3782 attgcttgaagcgcttctcctctagtgaagattat 3748
Score = 44.1 bits (22), Expect = 0.099
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 75 ccaacatcacgccctttccccacctggatatattcatg 112
||||||||||| ||||| |||| ||| |||||||||||
Sbjct: 4205 ccaacatcacgtcctttacccagctgtatatattcatg 4168
Score = 42.1 bits (21), Expect = 0.39
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 273 gcaagaacacgttgccccaaagtaacaaaactagtctcctgtttcgacataaa 325
|||||||||||||| || | ||||| ||||||||||| || || ||||||||
Sbjct: 3989 gcaagaacacgttgtccaatggtaacgaaactagtctcttggtttgacataaa 3937
>ref|NT_079927.2| Oryza sativa (japonica cultivar-group)
Length = 14818989
Score = 54.0 bits (27), Expect = 1e-004
Identities = 63/75 (84%)
Strand = Plus / Plus
Query: 465 ttatcctgattcatatcgatcgtctgaactgcatctcctcgagtgaagattatggcatgg 524
|||||||| |||||||| ||||| || || ||||| ||||| ||||| || |||||||||
Sbjct: 6165884 ttatcctggttcatatcaatcgtttgcacagcatcacctcgtgtgaatatgatggcatgg 6165943
Query: 525 ttttggttctcaggt 539
|| || || ||||||
Sbjct: 6165944 ttctgattttcaggt 6165958
Score = 50.1 bits (25), Expect = 0.002
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 189 gccttgctaatgccacctcgggttatgtgaaatatccgatcaaaaacatcaggatgtcca 248
|||||||||||||| |||| || |||| ||| |||| || || |||||||||||||||
Sbjct: 13638180 gccttgctaatgcctcctcttgtaatgttaaaaatcctgtcgaacacatcaggatgtcca 13638121
Query: 249 tagtg 253
|||||
Sbjct: 13638120 tagtg 13638116
Score = 50.1 bits (25), Expect = 0.002
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 189 gccttgctaatgccacctcgggttatgtgaaatatccgatcaaaaacatcaggatgtcca 248
|||||||||||||| |||| || |||| ||| |||| || || |||||||||||||||
Sbjct: 13636476 gccttgctaatgcctcctcttgtaatgttaaaaatcctgtcgaacacatcaggatgtcca 13636417
Query: 249 tagtg 253
|||||
Sbjct: 13636416 tagtg 13636412
Score = 48.1 bits (24), Expect = 0.006
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 519 gcatggttttggttctcaggtntgccttcaccnagctt 556
||||| ||||||||||| ||| |||||||||| |||||
Sbjct: 2130383 gcatgattttggttctctggtttgccttcaccaagctt 2130420
Score = 44.1 bits (22), Expect = 0.099
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 225 cgatcaaaaacatcaggatgtccatagtgcattcgaac 262
|||||||| ||||||||||| ||||| ||||| |||||
Sbjct: 6165650 cgatcaaatacatcaggatgcccataatgcatccgaac 6165687
Score = 44.1 bits (22), Expect = 0.099
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 276 agaacacgttgccccaaagtaacaaaactagtctcctg 313
|||||||| ||||||| |||||||||||| || |||||
Sbjct: 2130149 agaacacgctgccccagagtaacaaaacttgtttcctg 2130186
Score = 42.1 bits (21), Expect = 0.39
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 75 ccaacatcacgccctttccccacctggatatattcatggtg 115
||||||||||| || || || ||||||||||| ||||||||
Sbjct: 6165500 ccaacatcacgtcccttaccaacctggatatactcatggtg 6165540
>dbj|AP003249.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0435B05
Length = 150997
Score = 54.0 bits (27), Expect = 1e-004
Identities = 63/75 (84%)
Strand = Plus / Plus
Query: 465 ttatcctgattcatatcgatcgtctgaactgcatctcctcgagtgaagattatggcatgg 524
|||||||| |||||||| ||||| || || ||||| ||||| ||||| || |||||||||
Sbjct: 150854 ttatcctggttcatatcaatcgtttgcacagcatcacctcgtgtgaatatgatggcatgg 150913
Query: 525 ttttggttctcaggt 539
|| || || ||||||
Sbjct: 150914 ttctgattttcaggt 150928
Score = 44.1 bits (22), Expect = 0.099
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 225 cgatcaaaaacatcaggatgtccatagtgcattcgaac 262
|||||||| ||||||||||| ||||| ||||| |||||
Sbjct: 150620 cgatcaaatacatcaggatgcccataatgcatccgaac 150657
Score = 42.1 bits (21), Expect = 0.39
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 75 ccaacatcacgccctttccccacctggatatattcatggtg 115
||||||||||| || || || ||||||||||| ||||||||
Sbjct: 150470 ccaacatcacgtcccttaccaacctggatatactcatggtg 150510
>dbj|AP003268.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0503C12
Length = 147180
Score = 54.0 bits (27), Expect = 1e-004
Identities = 63/75 (84%)
Strand = Plus / Plus
Query: 465 ttatcctgattcatatcgatcgtctgaactgcatctcctcgagtgaagattatggcatgg 524
|||||||| |||||||| ||||| || || ||||| ||||| ||||| || |||||||||
Sbjct: 51563 ttatcctggttcatatcaatcgtttgcacagcatcacctcgtgtgaatatgatggcatgg 51622
Query: 525 ttttggttctcaggt 539
|| || || ||||||
Sbjct: 51623 ttctgattttcaggt 51637
Score = 44.1 bits (22), Expect = 0.099
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 225 cgatcaaaaacatcaggatgtccatagtgcattcgaac 262
|||||||| ||||||||||| ||||| ||||| |||||
Sbjct: 51329 cgatcaaatacatcaggatgcccataatgcatccgaac 51366
Score = 42.1 bits (21), Expect = 0.39
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 75 ccaacatcacgccctttccccacctggatatattcatggtg 115
||||||||||| || || || ||||||||||| ||||||||
Sbjct: 51179 ccaacatcacgtcccttaccaacctggatatactcatggtg 51219
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 54.0 bits (27), Expect = 1e-004
Identities = 63/75 (84%)
Strand = Plus / Plus
Query: 465 ttatcctgattcatatcgatcgtctgaactgcatctcctcgagtgaagattatggcatgg 524
|||||||| |||||||| ||||| || || ||||| ||||| ||||| || |||||||||
Sbjct: 6068527 ttatcctggttcatatcaatcgtttgcacagcatcacctcgtgtgaatatgatggcatgg 6068586
Query: 525 ttttggttctcaggt 539
|| || || ||||||
Sbjct: 6068587 ttctgattttcaggt 6068601
Score = 50.1 bits (25), Expect = 0.002
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 189 gccttgctaatgccacctcgggttatgtgaaatatccgatcaaaaacatcaggatgtcca 248
|||||||||||||| |||| || |||| ||| |||| || || |||||||||||||||
Sbjct: 13359289 gccttgctaatgcctcctcttgtaatgttaaaaatcctgtcgaacacatcaggatgtcca 13359230
Query: 249 tagtg 253
|||||
Sbjct: 13359229 tagtg 13359225
Score = 50.1 bits (25), Expect = 0.002
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 189 gccttgctaatgccacctcgggttatgtgaaatatccgatcaaaaacatcaggatgtcca 248
|||||||||||||| |||| || |||| ||| |||| || || |||||||||||||||
Sbjct: 13357585 gccttgctaatgcctcctcttgtaatgttaaaaatcctgtcgaacacatcaggatgtcca 13357526
Query: 249 tagtg 253
|||||
Sbjct: 13357525 tagtg 13357521
Score = 48.1 bits (24), Expect = 0.006
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 519 gcatggttttggttctcaggtntgccttcaccnagctt 556
||||| ||||||||||| ||| |||||||||| |||||
Sbjct: 2070834 gcatgattttggttctctggtttgccttcaccaagctt 2070871
Score = 44.1 bits (22), Expect = 0.099
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 225 cgatcaaaaacatcaggatgtccatagtgcattcgaac 262
|||||||| ||||||||||| ||||| ||||| |||||
Sbjct: 6068293 cgatcaaatacatcaggatgcccataatgcatccgaac 6068330
Score = 44.1 bits (22), Expect = 0.099
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 276 agaacacgttgccccaaagtaacaaaactagtctcctg 313
|||||||| ||||||| |||||||||||| || |||||
Sbjct: 2070600 agaacacgctgccccagagtaacaaaacttgtttcctg 2070637
Score = 42.1 bits (21), Expect = 0.39
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 75 ccaacatcacgccctttccccacctggatatattcatggtg 115
||||||||||| || || || ||||||||||| ||||||||
Sbjct: 6068143 ccaacatcacgtcccttaccaacctggatatactcatggtg 6068183
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 54.0 bits (27), Expect = 1e-004
Identities = 63/75 (84%)
Strand = Plus / Plus
Query: 465 ttatcctgattcatatcgatcgtctgaactgcatctcctcgagtgaagattatggcatgg 524
|||||||| |||||||| ||||| || || ||||| ||||| ||||| || |||||||||
Sbjct: 31270248 ttatcctggttcatatcaatcgtttgcacagcatcacctcgtgtgaatatgatggcatgg 31270307
Query: 525 ttttggttctcaggt 539
|| || || ||||||
Sbjct: 31270308 ttctgattttcaggt 31270322
Score = 50.1 bits (25), Expect = 0.002
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 189 gccttgctaatgccacctcgggttatgtgaaatatccgatcaaaaacatcaggatgtcca 248
|||||||||||||| |||| || |||| ||| |||| || || |||||||||||||||
Sbjct: 38561010 gccttgctaatgcctcctcttgtaatgttaaaaatcctgtcgaacacatcaggatgtcca 38560951
Query: 249 tagtg 253
|||||
Sbjct: 38560950 tagtg 38560946
Score = 50.1 bits (25), Expect = 0.002
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 189 gccttgctaatgccacctcgggttatgtgaaatatccgatcaaaaacatcaggatgtcca 248
|||||||||||||| |||| || |||| ||| |||| || || |||||||||||||||
Sbjct: 38559306 gccttgctaatgcctcctcttgtaatgttaaaaatcctgtcgaacacatcaggatgtcca 38559247
Query: 249 tagtg 253
|||||
Sbjct: 38559246 tagtg 38559242
Score = 50.1 bits (25), Expect = 0.002
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 189 gccttgctaatgccacctcgggttatgtgaaatatccgatcaaaaacatcaggatgtcca 248
|||||||||||||| |||| || |||| ||| |||| || || |||||||||||||||
Sbjct: 18379774 gccttgctaatgcctcctcttgtaatgttaaaaatcctgtcgaacacatcaggatgtcca 18379833
Query: 249 tagtg 253
|||||
Sbjct: 18379834 tagtg 18379838
Score = 48.1 bits (24), Expect = 0.006
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 519 gcatggttttggttctcaggtntgccttcaccnagctt 556
||||| ||||||||||| ||| |||||||||| |||||
Sbjct: 27272555 gcatgattttggttctctggtttgccttcaccaagctt 27272592
Score = 44.1 bits (22), Expect = 0.099
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 225 cgatcaaaaacatcaggatgtccatagtgcattcgaac 262
|||||||| ||||||||||| ||||| ||||| |||||
Sbjct: 31270014 cgatcaaatacatcaggatgcccataatgcatccgaac 31270051
Score = 44.1 bits (22), Expect = 0.099
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 276 agaacacgttgccccaaagtaacaaaactagtctcctg 313
|||||||| ||||||| |||||||||||| || |||||
Sbjct: 27272321 agaacacgctgccccagagtaacaaaacttgtttcctg 27272358
Score = 44.1 bits (22), Expect = 0.099
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 423 tcttcaagtaaatttctcattttcattgcttcctccaagtagttatcctg 472
||||| |||| |||||||||||| | ||||||||| | ||| ||||||||
Sbjct: 19059063 tcttccagtagatttctcattttaaatgcttcctcaaggtaattatcctg 19059112
Score = 44.1 bits (22), Expect = 0.099
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 75 ccaacatcacgccctttccccacctggatatattcatg 112
||||||||||| ||||| |||| ||| |||||||||||
Sbjct: 19057494 ccaacatcacgtcctttacccagctgtatatattcatg 19057531
Score = 42.1 bits (21), Expect = 0.39
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 75 ccaacatcacgccctttccccacctggatatattcatggtg 115
||||||||||| || || || ||||||||||| ||||||||
Sbjct: 31269864 ccaacatcacgtcccttaccaacctggatatactcatggtg 31269904
Score = 42.1 bits (21), Expect = 0.39
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 273 gcaagaacacgttgccccaaagtaacaaaactagtctcctgtttcgacataaa 325
|||||||||||||| || | ||||| ||||||||||| || || ||||||||
Sbjct: 19058796 gcaagaacacgttgtccaatggtaacgaaactagtctcttggtttgacataaa 19058848
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 54.0 bits (27), Expect = 1e-004
Identities = 63/75 (84%)
Strand = Plus / Plus
Query: 465 ttatcctgattcatatcgatcgtctgaactgcatctcctcgagtgaagattatggcatgg 524
|||||||| |||||||| ||||| || || ||||| ||||| ||||| || |||||||||
Sbjct: 31637831 ttatcctggttcatatcaatcgtttgcacagcatcacctcgtgtgaatatgatggcatgg 31637890
Query: 525 ttttggttctcaggt 539
|| || || ||||||
Sbjct: 31637891 ttctgattttcaggt 31637905
Score = 50.1 bits (25), Expect = 0.002
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 189 gccttgctaatgccacctcgggttatgtgaaatatccgatcaaaaacatcaggatgtcca 248
|||||||||||||| |||| || |||| ||| |||| || || |||||||||||||||
Sbjct: 39110127 gccttgctaatgcctcctcttgtaatgttaaaaatcctgtcgaacacatcaggatgtcca 39110068
Query: 249 tagtg 253
|||||
Sbjct: 39110067 tagtg 39110063
Score = 50.1 bits (25), Expect = 0.002
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 189 gccttgctaatgccacctcgggttatgtgaaatatccgatcaaaaacatcaggatgtcca 248
|||||||||||||| |||| || |||| ||| |||| || || |||||||||||||||
Sbjct: 39108423 gccttgctaatgcctcctcttgtaatgttaaaaatcctgtcgaacacatcaggatgtcca 39108364
Query: 249 tagtg 253
|||||
Sbjct: 39108363 tagtg 39108359
Score = 50.1 bits (25), Expect = 0.002
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 189 gccttgctaatgccacctcgggttatgtgaaatatccgatcaaaaacatcaggatgtcca 248
|||||||||||||| |||| || |||| ||| |||| || || |||||||||||||||
Sbjct: 18682216 gccttgctaatgcctcctcttgtaatgttaaaaatcctgtcgaacacatcaggatgtcca 18682275
Query: 249 tagtg 253
|||||
Sbjct: 18682276 tagtg 18682280
Score = 48.1 bits (24), Expect = 0.006
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 519 gcatggttttggttctcaggtntgccttcaccnagctt 556
||||| ||||||||||| ||| |||||||||| |||||
Sbjct: 27602330 gcatgattttggttctctggtttgccttcaccaagctt 27602367
Score = 44.1 bits (22), Expect = 0.099
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 225 cgatcaaaaacatcaggatgtccatagtgcattcgaac 262
|||||||| ||||||||||| ||||| ||||| |||||
Sbjct: 31637597 cgatcaaatacatcaggatgcccataatgcatccgaac 31637634
Score = 44.1 bits (22), Expect = 0.099
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 276 agaacacgttgccccaaagtaacaaaactagtctcctg 313
|||||||| ||||||| |||||||||||| || |||||
Sbjct: 27602096 agaacacgctgccccagagtaacaaaacttgtttcctg 27602133
Score = 44.1 bits (22), Expect = 0.099
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 423 tcttcaagtaaatttctcattttcattgcttcctccaagtagttatcctg 472
||||| |||| |||||||||||| | ||||||||| | ||| ||||||||
Sbjct: 19303560 tcttccagtagatttctcattttaaatgcttcctcaaggtaattatcctg 19303609
Score = 44.1 bits (22), Expect = 0.099
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 75 ccaacatcacgccctttccccacctggatatattcatg 112
||||||||||| ||||| |||| ||| |||||||||||
Sbjct: 19301991 ccaacatcacgtcctttacccagctgtatatattcatg 19302028
Score = 42.1 bits (21), Expect = 0.39
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 75 ccaacatcacgccctttccccacctggatatattcatggtg 115
||||||||||| || || || ||||||||||| ||||||||
Sbjct: 31637447 ccaacatcacgtcccttaccaacctggatatactcatggtg 31637487
Score = 42.1 bits (21), Expect = 0.39
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 273 gcaagaacacgttgccccaaagtaacaaaactagtctcctgtttcgacataaa 325
|||||||||||||| || | ||||| ||||||||||| || || ||||||||
Sbjct: 19303293 gcaagaacacgttgtccaatggtaacgaaactagtctcttggtttgacataaa 19303345
>dbj|AP004611.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:OJ1005_B10
Length = 142680
Score = 50.1 bits (25), Expect = 0.002
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 189 gccttgctaatgccacctcgggttatgtgaaatatccgatcaaaaacatcaggatgtcca 248
|||||||||||||| |||| || |||| ||| |||| || || |||||||||||||||
Sbjct: 69662 gccttgctaatgcctcctcttgtaatgttaaaaatcctgtcgaacacatcaggatgtcca 69721
Query: 249 tagtg 253
|||||
Sbjct: 69722 tagtg 69726
>gb|AACV01001361.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg001361, whole
genome shotgun sequence
Length = 5815
Score = 50.1 bits (25), Expect = 0.002
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 189 gccttgctaatgccacctcgggttatgtgaaatatccgatcaaaaacatcaggatgtcca 248
|||||||||||||| |||| || |||| ||| |||| || || |||||||||||||||
Sbjct: 1461 gccttgctaatgcctcctcttgtaatgttaaaaatcctgtcgaacacatcaggatgtcca 1402
Query: 249 tagtg 253
|||||
Sbjct: 1401 tagtg 1397
>gb|AACV01002851.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002851, whole
genome shotgun sequence
Length = 6957
Score = 50.1 bits (25), Expect = 0.002
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 189 gccttgctaatgccacctcgggttatgtgaaatatccgatcaaaaacatcaggatgtcca 248
|||||||||||||| |||| || |||| ||| |||| || || |||||||||||||||
Sbjct: 2326 gccttgctaatgcctcctcttgtaatgttaaaaatcctgtcgaacacatcaggatgtcca 2385
Query: 249 tagtg 253
|||||
Sbjct: 2386 tagtg 2390
Score = 50.1 bits (25), Expect = 0.002
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 189 gccttgctaatgccacctcgggttatgtgaaatatccgatcaaaaacatcaggatgtcca 248
|||||||||||||| |||| || |||| ||| |||| || || |||||||||||||||
Sbjct: 622 gccttgctaatgcctcctcttgtaatgttaaaaatcctgtcgaacacatcaggatgtcca 681
Query: 249 tagtg 253
|||||
Sbjct: 682 tagtg 686
>ref|NM_190295.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1488
Score = 50.1 bits (25), Expect = 0.002
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 189 gccttgctaatgccacctcgggttatgtgaaatatccgatcaaaaacatcaggatgtcca 248
|||||||||||||| |||| || |||| ||| |||| || || |||||||||||||||
Sbjct: 818 gccttgctaatgcctcctcttgtaatgttaaaaatcctgtcgaacacatcaggatgtcca 759
Query: 249 tagtg 253
|||||
Sbjct: 758 tagtg 754
Score = 50.1 bits (25), Expect = 0.002
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 189 gccttgctaatgccacctcgggttatgtgaaatatccgatcaaaaacatcaggatgtcca 248
|||||||||||||| |||| || |||| ||| |||| || || |||||||||||||||
Sbjct: 512 gccttgctaatgcctcctcttgtaatgttaaaaatcctgtcgaacacatcaggatgtcca 453
Query: 249 tagtg 253
|||||
Sbjct: 452 tagtg 448
>ref|NT_079926.2| Oryza sativa (japonica cultivar-group)
Length = 8469246
Score = 50.1 bits (25), Expect = 0.002
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 189 gccttgctaatgccacctcgggttatgtgaaatatccgatcaaaaacatcaggatgtcca 248
|||||||||||||| |||| || |||| ||| |||| || || |||||||||||||||
Sbjct: 1679165 gccttgctaatgcctcctcttgtaatgttaaaaatcctgtcgaacacatcaggatgtcca 1679224
Query: 249 tagtg 253
|||||
Sbjct: 1679225 tagtg 1679229
Score = 44.1 bits (22), Expect = 0.099
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 423 tcttcaagtaaatttctcattttcattgcttcctccaagtagttatcctg 472
||||| |||| |||||||||||| | ||||||||| | ||| ||||||||
Sbjct: 2300509 tcttccagtagatttctcattttaaatgcttcctcaaggtaattatcctg 2300558
Score = 44.1 bits (22), Expect = 0.099
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 75 ccaacatcacgccctttccccacctggatatattcatg 112
||||||||||| ||||| |||| ||| |||||||||||
Sbjct: 2298940 ccaacatcacgtcctttacccagctgtatatattcatg 2298977
Score = 42.1 bits (21), Expect = 0.39
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 273 gcaagaacacgttgccccaaagtaacaaaactagtctcctgtttcgacataaa 325
|||||||||||||| || | ||||| ||||||||||| || || ||||||||
Sbjct: 2300242 gcaagaacacgttgtccaatggtaacgaaactagtctcttggtttgacataaa 2300294
>dbj|AP003276.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0516D04
Length = 140491
Score = 50.1 bits (25), Expect = 0.002
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 189 gccttgctaatgccacctcgggttatgtgaaatatccgatcaaaaacatcaggatgtcca 248
|||||||||||||| |||| || |||| ||| |||| || || |||||||||||||||
Sbjct: 105489 gccttgctaatgcctcctcttgtaatgttaaaaatcctgtcgaacacatcaggatgtcca 105548
Query: 249 tagtg 253
|||||
Sbjct: 105549 tagtg 105553
>dbj|AP006233.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:B1249E06
Length = 126534
Score = 50.1 bits (25), Expect = 0.002
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 189 gccttgctaatgccacctcgggttatgtgaaatatccgatcaaaaacatcaggatgtcca 248
|||||||||||||| |||| || |||| ||| |||| || || |||||||||||||||
Sbjct: 3733 gccttgctaatgcctcctcttgtaatgttaaaaatcctgtcgaacacatcaggatgtcca 3792
Query: 249 tagtg 253
|||||
Sbjct: 3793 tagtg 3797
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 857,423
Number of Sequences: 438736
Number of extensions: 857423
Number of successful extensions: 5288
Number of sequences better than 0.5: 90
Number of HSP's better than 0.5 without gapping: 104
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 4585
Number of HSP's gapped (non-prelim): 701
length of query: 691
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 670
effective length of database: 2,791,206,460
effective search space: 1870108328200
effective search space used: 1870108328200
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)