BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QAF1g01.yg.2.1
         (335 letters)

Database: Oryza_nucl_with_EST.fasta 
           438,736 sequences; 2,800,419,916 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XM_550490.1|  Oryza sativa (japonica cultivar-group),  mRNA   192   8e-047
gb|CB671521.1|CB671521  OSJNEe05C09.f OSJNEe Oryza sativa (j...    78   3e-012
dbj|AK069531.1|  Oryza sativa (japonica cultivar-group) cDNA...    78   3e-012
ref|NM_187562.1|  Oryza sativa (japonica cultivar-group),  p...    78   3e-012
gb|AACV01012882.1|  Oryza sativa (japonica cultivar-group) c...    74   5e-011
dbj|AP001552.1|  Oryza sativa (japonica cultivar-group) gene...    74   5e-011
dbj|AP001389.1|  Oryza sativa (japonica cultivar-group) geno...    74   5e-011
ref|NT_107230.2|  Oryza sativa (japonica cultivar-group)           74   5e-011
gb|CH401209.1|  Oryza sativa (japonica cultivar-group) chrom...    74   5e-011
gb|CM000143.1|  Oryza sativa (japonica cultivar-group) chrom...    74   5e-011
dbj|AP008212.1|  Oryza sativa (japonica cultivar-group) geno...    74   5e-011
gb|AC118980.2|  Oryza sativa (japonica cultivar-group) chrom...    64   5e-008
gb|AACV01005773.1|  Oryza sativa (japonica cultivar-group) c...    64   5e-008
ref|NT_107183.1|  Oryza sativa (japonica cultivar-group)           64   5e-008
gb|CH401173.1|  Oryza sativa (japonica cultivar-group) chrom...    64   5e-008
gb|CM000140.1|  Oryza sativa (japonica cultivar-group) chrom...    64   5e-008
dbj|AP008209.1|  Oryza sativa (japonica cultivar-group) geno...    64   5e-008
gb|DP000009.1|  Oryza sativa (japonica cultivar-group) chrom...    64   5e-008
gb|CW883569.1|CW883569  Rice CISP Intron:I00_X00_F_PRSC1_002...    44   0.046
gb|CW883855.1|CW883855  Rice CISP Intron:I00_X00_F_PRSC1_002...    44   0.046
dbj|AK064446.1|  Oryza sativa (japonica cultivar-group) cDNA...    44   0.046
gb|AACV01001413.1|  Oryza sativa (japonica cultivar-group) c...    44   0.046
dbj|BA000010.8|  Oryza sativa (japonica cultivar-group) geno...    44   0.046
ref|NM_193211.1|  Oryza sativa (japonica cultivar-group),  p...    44   0.046
ref|NT_079926.2|  Oryza sativa (japonica cultivar-group)           44   0.046
dbj|AP003447.2|  Oryza sativa (japonica cultivar-group) geno...    44   0.046
dbj|AP003445.2|  Oryza sativa (japonica cultivar-group) geno...    44   0.046
gb|CH401166.1|  Oryza sativa (japonica cultivar-group) chrom...    44   0.046
gb|CM000138.1|  Oryza sativa (japonica cultivar-group) chrom...    44   0.046
dbj|AP008207.1|  Oryza sativa (japonica cultivar-group) geno...    44   0.046
dbj|AK099782.1|  Oryza sativa (japonica cultivar-group) cDNA...    42   0.18 
dbj|AK120195.1|  Oryza sativa (japonica cultivar-group) cDNA...    42   0.18 
dbj|AK120402.1|  Oryza sativa (japonica cultivar-group) cDNA...    42   0.18 
gb|AACV01002367.1|  Oryza sativa (japonica cultivar-group) c...    42   0.18 
ref|NM_191270.1|  Oryza sativa (japonica cultivar-group),  p...    42   0.18 
ref|NT_079927.2|  Oryza sativa (japonica cultivar-group)           42   0.18 
dbj|AP003249.3|  Oryza sativa (japonica cultivar-group) geno...    42   0.18 
dbj|AP003268.4|  Oryza sativa (japonica cultivar-group) geno...    42   0.18 
gb|CH401168.1|  Oryza sativa (japonica cultivar-group) chrom...    42   0.18 
>ref|XM_550490.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 5316

 Score =  192 bits (97), Expect = 8e-047
 Identities = 205/243 (84%)
 Strand = Plus / Minus

                                                                        
Query: 1    acacatctcggctgagaacttgctcaccattgcctccagcaactttcccctcaaatagtg 60
            ||||||||| ||| | |||||| ||||| || || || || |||||||| || || ||||
Sbjct: 3973 acacatctctgcttaaaacttgttcaccgttaccaccggctactttcccttcgaaaagtg 3914

                                                                        
Query: 61   caatttggttcaagccaacatcacgccctttccccacctggatatattcatggtgtgtga 120
            | ||||||||||| |||||||| || |||||||| |||||||||||||||||||||||||
Sbjct: 3913 ctatttggttcaaaccaacatctcgtcctttcccaacctggatatattcatggtgtgtga 3854

                                                                        
Query: 121  tgttcccttggcgcaaagtcgaattgaacccggcatatatatcttcgcttatattaatca 180
            | || || ||||||| |||||||||||| || |||||||||||||| |||||||||||||
Sbjct: 3853 tatttccctggcgcagagtcgaattgaatccagcatatatatcttcacttatattaatca 3794

                                                                        
Query: 181  ctcgagacgccttnnnaatgccacctcgggttatnnnaaatatccgatcaaaaacatcag 240
            | |  || || ||    |||||||||| ||||||   |||||| ||||||||||||||||
Sbjct: 3793 ccccggatgctttgcttatgccacctctggttatatgaaatatgcgatcaaaaacatcag 3734

               
Query: 241  gat 243
            |||
Sbjct: 3733 gat 3731
>gb|CB671521.1|CB671521 OSJNEe05C09.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
           clone OSJNEe05C09 5', mRNA sequence
          Length = 838

 Score = 77.8 bits (39), Expect = 3e-012
 Identities = 126/155 (81%)
 Strand = Plus / Minus

                                                                       
Query: 9   cggctgagaacttgctcaccattgcctccagcaactttcccctcaaatagtgcaatttgg 68
           |||||||| |||||||||||||| |||||||||||||| || || || |||||||| || 
Sbjct: 693 cggctgagcacttgctcaccatttcctccagcaacttttccttcgaacagtgcaatctga 634

                                                                       
Query: 69  ttcaagccaacatcacgccctttccccacctggatatattcatggtgtgtgatgttccct 128
           || |  ||||| || |  || || || ||||| ||||||||||| || || |||||||||
Sbjct: 633 ttaagaccaacgtctcttccctttccaacctgaatatattcatgatgagttatgttccct 574

                                              
Query: 129 tggcgcaaagtcgaattgaacccggcatatatatc 163
             ||||| ||| || |||||||| ||||| |||||
Sbjct: 573 aagcgcagagttgagttgaaccctgcataaatatc 539
>dbj|AK069531.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023020O14, full
           insert sequence
          Length = 2087

 Score = 77.8 bits (39), Expect = 3e-012
 Identities = 126/155 (81%)
 Strand = Plus / Minus

                                                                       
Query: 9   cggctgagaacttgctcaccattgcctccagcaactttcccctcaaatagtgcaatttgg 68
           |||||||| |||||||||||||| |||||||||||||| || || || |||||||| || 
Sbjct: 482 cggctgagcacttgctcaccatttcctccagcaacttttccttcgaacagtgcaatctga 423

                                                                       
Query: 69  ttcaagccaacatcacgccctttccccacctggatatattcatggtgtgtgatgttccct 128
           || |  ||||| || |  || || || ||||| ||||||||||| || || |||||||||
Sbjct: 422 ttaagaccaacgtctcttccctttccaacctgaatatattcatgatgagttatgttccct 363

                                              
Query: 129 tggcgcaaagtcgaattgaacccggcatatatatc 163
             ||||| ||| || |||||||| ||||| |||||
Sbjct: 362 aagcgcagagttgagttgaaccctgcataaatatc 328
>ref|NM_187562.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 6168

 Score = 77.8 bits (39), Expect = 3e-012
 Identities = 126/155 (81%)
 Strand = Plus / Minus

                                                                        
Query: 9    cggctgagaacttgctcaccattgcctccagcaactttcccctcaaatagtgcaatttgg 68
            |||||||| |||||||||||||| |||||||||||||| || || || |||||||| || 
Sbjct: 3512 cggctgagcacttgctcaccatttcctccagcaacttttccttcgaacagtgcaatctga 3453

                                                                        
Query: 69   ttcaagccaacatcacgccctttccccacctggatatattcatggtgtgtgatgttccct 128
            || |  ||||| || |  || || || ||||| ||||||||||| || || |||||||||
Sbjct: 3452 ttaagaccaacgtctcttccctttccaacctgaatatattcatgatgagttatgttccct 3393

                                               
Query: 129  tggcgcaaagtcgaattgaacccggcatatatatc 163
              ||||| ||| || |||||||| ||||| |||||
Sbjct: 3392 aagcgcagagttgagttgaaccctgcataaatatc 3358
>gb|AACV01012882.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg012882, whole
             genome shotgun sequence
          Length = 24683

 Score = 73.8 bits (37), Expect = 5e-011
 Identities = 49/53 (92%)
 Strand = Plus / Minus

                                                                  
Query: 96    acctggatatattcatggtgtgtgatgttcccttggcgcaaagtcgaattgaa 148
             |||||||||||||||||||||||||| || || ||||||| ||||||||||||
Sbjct: 10863 acctggatatattcatggtgtgtgatatttccctggcgcagagtcgaattgaa 10811

 Score = 73.8 bits (37), Expect = 5e-011
 Identities = 76/91 (83%)
 Strand = Plus / Minus

                                                                         
Query: 153   gcatatatatcttcgcttatattaatcactcgagacgccttnnnaatgccacctcgggtt 212
             |||||||||||||| |||||||||||||| |  || || ||    |||||||||| ||||
Sbjct: 10374 gcatatatatcttcacttatattaatcaccccggatgctttgcttatgccacctctggtt 10315

                                            
Query: 213   atnnnaaatatccgatcaaaaacatcaggat 243
             ||   |||||| |||||||||||||||||||
Sbjct: 10314 atatgaaatatgcgatcaaaaacatcaggat 10284

 Score = 61.9 bits (31), Expect = 2e-007
 Identities = 82/99 (82%)
 Strand = Plus / Minus

                                                                         
Query: 1     acacatctcggctgagaacttgctcaccattgcctccagcaactttcccctcaaatagtg 60
             ||||||||| ||| | |||||| ||||| || || || || |||||||| || || ||||
Sbjct: 11381 acacatctctgcttaaaacttgttcaccgttaccaccggctactttcccttcgaaaagtg 11322

                                                    
Query: 61    caatttggttcaagccaacatcacgccctttccccacct 99
             | ||||||||||| |||||||| || |||||||| ||||
Sbjct: 11321 ctatttggttcaaaccaacatctcgtcctttcccaacct 11283
>dbj|AP001552.1| Oryza sativa (japonica cultivar-group) geneomic DNA, chromosome 6, PAC
              clone:P0029D06
          Length = 150120

 Score = 73.8 bits (37), Expect = 5e-011
 Identities = 76/91 (83%)
 Strand = Plus / Plus

                                                                          
Query: 153    gcatatatatcttcgcttatattaatcactcgagacgccttnnnaatgccacctcgggtt 212
              |||||||||||||| |||||||||||||| |  || || ||    |||||||||| ||||
Sbjct: 135979 gcatatatatcttcacttatattaatcaccccggatgctttgcttatgccacctctggtt 136038

                                             
Query: 213    atnnnaaatatccgatcaaaaacatcaggat 243
              ||   |||||| |||||||||||||||||||
Sbjct: 136039 atatgaaatatgcgatcaaaaacatcaggat 136069

 Score = 73.8 bits (37), Expect = 5e-011
 Identities = 49/53 (92%)
 Strand = Plus / Plus

                                                                   
Query: 96     acctggatatattcatggtgtgtgatgttcccttggcgcaaagtcgaattgaa 148
              |||||||||||||||||||||||||| || || ||||||| ||||||||||||
Sbjct: 135490 acctggatatattcatggtgtgtgatatttccctggcgcagagtcgaattgaa 135542

 Score = 61.9 bits (31), Expect = 2e-007
 Identities = 82/99 (82%)
 Strand = Plus / Plus

                                                                          
Query: 1      acacatctcggctgagaacttgctcaccattgcctccagcaactttcccctcaaatagtg 60
              ||||||||| ||| | |||||| ||||| || || || || |||||||| || || ||||
Sbjct: 134972 acacatctctgcttaaaacttgttcaccgttaccaccggctactttcccttcgaaaagtg 135031

                                                     
Query: 61     caatttggttcaagccaacatcacgccctttccccacct 99
              | ||||||||||| |||||||| || |||||||| ||||
Sbjct: 135032 ctatttggttcaaaccaacatctcgtcctttcccaacct 135070
>dbj|AP001389.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0541H01
          Length = 157519

 Score = 73.8 bits (37), Expect = 5e-011
 Identities = 76/91 (83%)
 Strand = Plus / Plus

                                                                         
Query: 153   gcatatatatcttcgcttatattaatcactcgagacgccttnnnaatgccacctcgggtt 212
             |||||||||||||| |||||||||||||| |  || || ||    |||||||||| ||||
Sbjct: 12685 gcatatatatcttcacttatattaatcaccccggatgctttgcttatgccacctctggtt 12744

                                            
Query: 213   atnnnaaatatccgatcaaaaacatcaggat 243
             ||   |||||| |||||||||||||||||||
Sbjct: 12745 atatgaaatatgcgatcaaaaacatcaggat 12775

 Score = 73.8 bits (37), Expect = 5e-011
 Identities = 49/53 (92%)
 Strand = Plus / Plus

                                                                  
Query: 96    acctggatatattcatggtgtgtgatgttcccttggcgcaaagtcgaattgaa 148
             |||||||||||||||||||||||||| || || ||||||| ||||||||||||
Sbjct: 12196 acctggatatattcatggtgtgtgatatttccctggcgcagagtcgaattgaa 12248

 Score = 61.9 bits (31), Expect = 2e-007
 Identities = 82/99 (82%)
 Strand = Plus / Plus

                                                                         
Query: 1     acacatctcggctgagaacttgctcaccattgcctccagcaactttcccctcaaatagtg 60
             ||||||||| ||| | |||||| ||||| || || || || |||||||| || || ||||
Sbjct: 11678 acacatctctgcttaaaacttgttcaccgttaccaccggctactttcccttcgaaaagtg 11737

                                                    
Query: 61    caatttggttcaagccaacatcacgccctttccccacct 99
             | ||||||||||| |||||||| || |||||||| ||||
Sbjct: 11738 ctatttggttcaaaccaacatctcgtcctttcccaacct 11776
>ref|NT_107230.2| Oryza sativa (japonica cultivar-group)
          Length = 2805126

 Score = 73.8 bits (37), Expect = 5e-011
 Identities = 76/91 (83%)
 Strand = Plus / Plus

                                                                          
Query: 153    gcatatatatcttcgcttatattaatcactcgagacgccttnnnaatgccacctcgggtt 212
              |||||||||||||| |||||||||||||| |  || || ||    |||||||||| ||||
Sbjct: 693128 gcatatatatcttcacttatattaatcaccccggatgctttgcttatgccacctctggtt 693187

                                             
Query: 213    atnnnaaatatccgatcaaaaacatcaggat 243
              ||   |||||| |||||||||||||||||||
Sbjct: 693188 atatgaaatatgcgatcaaaaacatcaggat 693218

 Score = 73.8 bits (37), Expect = 5e-011
 Identities = 49/53 (92%)
 Strand = Plus / Plus

                                                                   
Query: 96     acctggatatattcatggtgtgtgatgttcccttggcgcaaagtcgaattgaa 148
              |||||||||||||||||||||||||| || || ||||||| ||||||||||||
Sbjct: 692639 acctggatatattcatggtgtgtgatatttccctggcgcagagtcgaattgaa 692691

 Score = 61.9 bits (31), Expect = 2e-007
 Identities = 82/99 (82%)
 Strand = Plus / Plus

                                                                          
Query: 1      acacatctcggctgagaacttgctcaccattgcctccagcaactttcccctcaaatagtg 60
              ||||||||| ||| | |||||| ||||| || || || || |||||||| || || ||||
Sbjct: 692121 acacatctctgcttaaaacttgttcaccgttaccaccggctactttcccttcgaaaagtg 692180

                                                     
Query: 61     caatttggttcaagccaacatcacgccctttccccacct 99
              | ||||||||||| |||||||| || |||||||| ||||
Sbjct: 692181 ctatttggttcaaaccaacatctcgtcctttcccaacct 692219
>gb|CH401209.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000046
              genomic scaffold, whole genome shotgun sequence
          Length = 8607552

 Score = 73.8 bits (37), Expect = 5e-011
 Identities = 76/91 (83%)
 Strand = Plus / Plus

                                                                          
Query: 153    gcatatatatcttcgcttatattaatcactcgagacgccttnnnaatgccacctcgggtt 212
              |||||||||||||| |||||||||||||| |  || || ||    |||||||||| ||||
Sbjct: 621947 gcatatatatcttcacttatattaatcaccccggatgctttgcttatgccacctctggtt 622006

                                             
Query: 213    atnnnaaatatccgatcaaaaacatcaggat 243
              ||   |||||| |||||||||||||||||||
Sbjct: 622007 atatgaaatatgcgatcaaaaacatcaggat 622037

 Score = 73.8 bits (37), Expect = 5e-011
 Identities = 49/53 (92%)
 Strand = Plus / Plus

                                                                   
Query: 96     acctggatatattcatggtgtgtgatgttcccttggcgcaaagtcgaattgaa 148
              |||||||||||||||||||||||||| || || ||||||| ||||||||||||
Sbjct: 621458 acctggatatattcatggtgtgtgatatttccctggcgcagagtcgaattgaa 621510

 Score = 61.9 bits (31), Expect = 2e-007
 Identities = 82/99 (82%)
 Strand = Plus / Plus

                                                                          
Query: 1      acacatctcggctgagaacttgctcaccattgcctccagcaactttcccctcaaatagtg 60
              ||||||||| ||| | |||||| ||||| || || || || |||||||| || || ||||
Sbjct: 620940 acacatctctgcttaaaacttgttcaccgttaccaccggctactttcccttcgaaaagtg 620999

                                                     
Query: 61     caatttggttcaagccaacatcacgccctttccccacct 99
              | ||||||||||| |||||||| || |||||||| ||||
Sbjct: 621000 ctatttggttcaaaccaacatctcgtcctttcccaacct 621038
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
              sequence
          Length = 29740507

 Score = 73.8 bits (37), Expect = 5e-011
 Identities = 76/91 (83%)
 Strand = Plus / Plus

                                                                          
Query: 153    gcatatatatcttcgcttatattaatcactcgagacgccttnnnaatgccacctcgggtt 212
              |||||||||||||| |||||||||||||| |  || || ||    |||||||||| ||||
Sbjct: 621947 gcatatatatcttcacttatattaatcaccccggatgctttgcttatgccacctctggtt 622006

                                             
Query: 213    atnnnaaatatccgatcaaaaacatcaggat 243
              ||   |||||| |||||||||||||||||||
Sbjct: 622007 atatgaaatatgcgatcaaaaacatcaggat 622037

 Score = 73.8 bits (37), Expect = 5e-011
 Identities = 49/53 (92%)
 Strand = Plus / Plus

                                                                   
Query: 96     acctggatatattcatggtgtgtgatgttcccttggcgcaaagtcgaattgaa 148
              |||||||||||||||||||||||||| || || ||||||| ||||||||||||
Sbjct: 621458 acctggatatattcatggtgtgtgatatttccctggcgcagagtcgaattgaa 621510

 Score = 61.9 bits (31), Expect = 2e-007
 Identities = 82/99 (82%)
 Strand = Plus / Plus

                                                                          
Query: 1      acacatctcggctgagaacttgctcaccattgcctccagcaactttcccctcaaatagtg 60
              ||||||||| ||| | |||||| ||||| || || || || |||||||| || || ||||
Sbjct: 620940 acacatctctgcttaaaacttgttcaccgttaccaccggctactttcccttcgaaaagtg 620999

                                                     
Query: 61     caatttggttcaagccaacatcacgccctttccccacct 99
              | ||||||||||| |||||||| || |||||||| ||||
Sbjct: 621000 ctatttggttcaaaccaacatctcgtcctttcccaacct 621038
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
              complete sequence
          Length = 30731886

 Score = 73.8 bits (37), Expect = 5e-011
 Identities = 76/91 (83%)
 Strand = Plus / Plus

                                                                          
Query: 153    gcatatatatcttcgcttatattaatcactcgagacgccttnnnaatgccacctcgggtt 212
              |||||||||||||| |||||||||||||| |  || || ||    |||||||||| ||||
Sbjct: 729551 gcatatatatcttcacttatattaatcaccccggatgctttgcttatgccacctctggtt 729610

                                             
Query: 213    atnnnaaatatccgatcaaaaacatcaggat 243
              ||   |||||| |||||||||||||||||||
Sbjct: 729611 atatgaaatatgcgatcaaaaacatcaggat 729641

 Score = 73.8 bits (37), Expect = 5e-011
 Identities = 49/53 (92%)
 Strand = Plus / Plus

                                                                   
Query: 96     acctggatatattcatggtgtgtgatgttcccttggcgcaaagtcgaattgaa 148
              |||||||||||||||||||||||||| || || ||||||| ||||||||||||
Sbjct: 729062 acctggatatattcatggtgtgtgatatttccctggcgcagagtcgaattgaa 729114

 Score = 61.9 bits (31), Expect = 2e-007
 Identities = 82/99 (82%)
 Strand = Plus / Plus

                                                                          
Query: 1      acacatctcggctgagaacttgctcaccattgcctccagcaactttcccctcaaatagtg 60
              ||||||||| ||| | |||||| ||||| || || || || |||||||| || || ||||
Sbjct: 728544 acacatctctgcttaaaacttgttcaccgttaccaccggctactttcccttcgaaaagtg 728603

                                                     
Query: 61     caatttggttcaagccaacatcacgccctttccccacct 99
              | ||||||||||| |||||||| || |||||||| ||||
Sbjct: 728604 ctatttggttcaaaccaacatctcgtcctttcccaacct 728642
>gb|AC118980.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1263H11,
             complete sequence
          Length = 126827

 Score = 63.9 bits (32), Expect = 5e-008
 Identities = 50/56 (89%)
 Strand = Plus / Minus

                                                                     
Query: 9     cggctgagaacttgctcaccattgcctccagcaactttcccctcaaatagtgcaat 64
             |||||||| |||||||||||||| |||||||||||||| || || || ||||||||
Sbjct: 69765 cggctgagcacttgctcaccatttcctccagcaacttttccttcgaacagtgcaat 69710
>gb|AACV01005773.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg005773, whole
             genome shotgun sequence
          Length = 82514

 Score = 63.9 bits (32), Expect = 5e-008
 Identities = 50/56 (89%)
 Strand = Plus / Minus

                                                                     
Query: 9     cggctgagaacttgctcaccattgcctccagcaactttcccctcaaatagtgcaat 64
             |||||||| |||||||||||||| |||||||||||||| || || || ||||||||
Sbjct: 21792 cggctgagcacttgctcaccatttcctccagcaacttttccttcgaacagtgcaat 21737
>ref|NT_107183.1| Oryza sativa (japonica cultivar-group)
          Length = 1680144

 Score = 63.9 bits (32), Expect = 5e-008
 Identities = 50/56 (89%)
 Strand = Plus / Minus

                                                                       
Query: 9       cggctgagaacttgctcaccattgcctccagcaactttcccctcaaatagtgcaat 64
               |||||||| |||||||||||||| |||||||||||||| || || || ||||||||
Sbjct: 1049548 cggctgagcacttgctcaccatttcctccagcaacttttccttcgaacagtgcaat 1049493
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
               scaffold, whole genome shotgun sequence
          Length = 13858245

 Score = 63.9 bits (32), Expect = 5e-008
 Identities = 50/56 (89%)
 Strand = Plus / Minus

                                                                       
Query: 9       cggctgagaacttgctcaccattgcctccagcaactttcccctcaaatagtgcaat 64
               |||||||| |||||||||||||| |||||||||||||| || || || ||||||||
Sbjct: 1047727 cggctgagcacttgctcaccatttcctccagcaacttttccttcgaacagtgcaat 1047672
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
               sequence
          Length = 37803064

 Score = 63.9 bits (32), Expect = 5e-008
 Identities = 50/56 (89%)
 Strand = Plus / Minus

                                                                       
Query: 9       cggctgagaacttgctcaccattgcctccagcaactttcccctcaaatagtgcaat 64
               |||||||| |||||||||||||| |||||||||||||| || || || ||||||||
Sbjct: 1240089 cggctgagcacttgctcaccatttcctccagcaacttttccttcgaacagtgcaat 1240034
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 63.9 bits (32), Expect = 5e-008
 Identities = 50/56 (89%)
 Strand = Plus / Minus

                                                                       
Query: 9       cggctgagaacttgctcaccattgcctccagcaactttcccctcaaatagtgcaat 64
               |||||||| |||||||||||||| |||||||||||||| || || || ||||||||
Sbjct: 1049548 cggctgagcacttgctcaccatttcctccagcaacttttccttcgaacagtgcaat 1049493
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 63.9 bits (32), Expect = 5e-008
 Identities = 50/56 (89%)
 Strand = Plus / Minus

                                                                       
Query: 9       cggctgagaacttgctcaccattgcctccagcaactttcccctcaaatagtgcaat 64
               |||||||| |||||||||||||| |||||||||||||| || || || ||||||||
Sbjct: 1049550 cggctgagcacttgctcaccatttcctccagcaacttttccttcgaacagtgcaat 1049495
>gb|CW883569.1|CW883569 Rice CISP Intron:I00_X00_F_PRSC1_002_RICE_AZUC AZUC Oryza sativa
           (japonica cultivar-group) genomic, DNA sequence
          Length = 336

 Score = 44.1 bits (22), Expect = 0.046
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 75  ccaacatcacgccctttccccacctggatatattcatg 112
           ||||||||||| ||||| |||| ||| |||||||||||
Sbjct: 98  ccaacatcacgtcctttacccagctgtatatattcatg 61
>gb|CW883855.1|CW883855 Rice CISP Intron:I00_X00_F_PRSC1_002_RICE_CT99 CT99 Oryza sativa
           (japonica cultivar-group) genomic, DNA sequence
          Length = 500

 Score = 44.1 bits (22), Expect = 0.046
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 75  ccaacatcacgccctttccccacctggatatattcatg 112
           ||||||||||| ||||| |||| ||| |||||||||||
Sbjct: 134 ccaacatcacgtcctttacccagctgtatatattcatg 97
>dbj|AK064446.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-110-F01, full
           insert sequence
          Length = 1923

 Score = 44.1 bits (22), Expect = 0.046
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 75  ccaacatcacgccctttccccacctggatatattcatg 112
           ||||||||||| ||||| |||| ||| |||||||||||
Sbjct: 156 ccaacatcacgtcctttacccagctgtatatattcatg 119
>gb|AACV01001413.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg001413, whole
            genome shotgun sequence
          Length = 32302

 Score = 44.1 bits (22), Expect = 0.046
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                  
Query: 75   ccaacatcacgccctttccccacctggatatattcatg 112
            ||||||||||| ||||| |||| ||| |||||||||||
Sbjct: 8956 ccaacatcacgtcctttacccagctgtatatattcatg 8993
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43342410

 Score = 44.1 bits (22), Expect = 0.046
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                      
Query: 75       ccaacatcacgccctttccccacctggatatattcatg 112
                ||||||||||| ||||| |||| ||| |||||||||||
Sbjct: 19380708 ccaacatcacgtcctttacccagctgtatatattcatg 19380745

 Score = 42.1 bits (21), Expect = 0.18
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                         
Query: 75       ccaacatcacgccctttccccacctggatatattcatggtg 115
                ||||||||||| || || || ||||||||||| ||||||||
Sbjct: 31718117 ccaacatcacgtcccttaccaacctggatatactcatggtg 31718157
>ref|NM_193211.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 5634

 Score = 44.1 bits (22), Expect = 0.046
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 75   ccaacatcacgccctttccccacctggatatattcatg 112
            ||||||||||| ||||| |||| ||| |||||||||||
Sbjct: 4205 ccaacatcacgtcctttacccagctgtatatattcatg 4168
>ref|NT_079926.2| Oryza sativa (japonica cultivar-group)
          Length = 8469246

 Score = 44.1 bits (22), Expect = 0.046
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                     
Query: 75      ccaacatcacgccctttccccacctggatatattcatg 112
               ||||||||||| ||||| |||| ||| |||||||||||
Sbjct: 2298940 ccaacatcacgtcctttacccagctgtatatattcatg 2298977
>dbj|AP003447.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OJ1619_F12
          Length = 133028

 Score = 44.1 bits (22), Expect = 0.046
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                    
Query: 75     ccaacatcacgccctttccccacctggatatattcatg 112
              ||||||||||| ||||| |||| ||| |||||||||||
Sbjct: 121612 ccaacatcacgtcctttacccagctgtatatattcatg 121649
>dbj|AP003445.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1029_F04
          Length = 141834

 Score = 44.1 bits (22), Expect = 0.046
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                   
Query: 75    ccaacatcacgccctttccccacctggatatattcatg 112
             ||||||||||| ||||| |||| ||| |||||||||||
Sbjct: 29996 ccaacatcacgtcctttacccagctgtatatattcatg 30033
>gb|CH401166.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000003 genomic
               scaffold, whole genome shotgun sequence
          Length = 8539496

 Score = 44.1 bits (22), Expect = 0.046
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                     
Query: 75      ccaacatcacgccctttccccacctggatatattcatg 112
               ||||||||||| ||||| |||| ||| |||||||||||
Sbjct: 2432371 ccaacatcacgtcctttacccagctgtatatattcatg 2432408
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
                sequence
          Length = 42596331

 Score = 44.1 bits (22), Expect = 0.046
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                      
Query: 75       ccaacatcacgccctttccccacctggatatattcatg 112
                ||||||||||| ||||| |||| ||| |||||||||||
Sbjct: 19057494 ccaacatcacgtcctttacccagctgtatatattcatg 19057531

 Score = 42.1 bits (21), Expect = 0.18
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                         
Query: 75       ccaacatcacgccctttccccacctggatatattcatggtg 115
                ||||||||||| || || || ||||||||||| ||||||||
Sbjct: 31269864 ccaacatcacgtcccttaccaacctggatatactcatggtg 31269904
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 44.1 bits (22), Expect = 0.046
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                      
Query: 75       ccaacatcacgccctttccccacctggatatattcatg 112
                ||||||||||| ||||| |||| ||| |||||||||||
Sbjct: 19301991 ccaacatcacgtcctttacccagctgtatatattcatg 19302028

 Score = 42.1 bits (21), Expect = 0.18
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                         
Query: 75       ccaacatcacgccctttccccacctggatatattcatggtg 115
                ||||||||||| || || || ||||||||||| ||||||||
Sbjct: 31637447 ccaacatcacgtcccttaccaacctggatatactcatggtg 31637487
>dbj|AK099782.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013095O05, full
            insert sequence
          Length = 5774

 Score = 42.1 bits (21), Expect = 0.18
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 75   ccaacatcacgccctttccccacctggatatattcatggtg 115
            ||||||||||| || || || ||||||||||| ||||||||
Sbjct: 4085 ccaacatcacgtcccttaccaacctggatatactcatggtg 4045
>dbj|AK120195.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013036H01, full
            insert sequence
          Length = 5949

 Score = 42.1 bits (21), Expect = 0.18
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 75   ccaacatcacgccctttccccacctggatatattcatggtg 115
            ||||||||||| || || || ||||||||||| ||||||||
Sbjct: 3989 ccaacatcacgtcccttaccaacctggatatactcatggtg 3949
>dbj|AK120402.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013088I17, full
            insert sequence
          Length = 5396

 Score = 42.1 bits (21), Expect = 0.18
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 75   ccaacatcacgccctttccccacctggatatattcatggtg 115
            ||||||||||| || || || ||||||||||| ||||||||
Sbjct: 3674 ccaacatcacgtcccttaccaacctggatatactcatggtg 3634
>gb|AACV01002367.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002367, whole
             genome shotgun sequence
          Length = 23038

 Score = 42.1 bits (21), Expect = 0.18
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                      
Query: 75    ccaacatcacgccctttccccacctggatatattcatggtg 115
             ||||||||||| || || || ||||||||||| ||||||||
Sbjct: 11926 ccaacatcacgtcccttaccaacctggatatactcatggtg 11886
>ref|NM_191270.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 5373

 Score = 42.1 bits (21), Expect = 0.18
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 75   ccaacatcacgccctttccccacctggatatattcatggtg 115
            ||||||||||| || || || ||||||||||| ||||||||
Sbjct: 3950 ccaacatcacgtcccttaccaacctggatatactcatggtg 3910
>ref|NT_079927.2| Oryza sativa (japonica cultivar-group)
          Length = 14818989

 Score = 42.1 bits (21), Expect = 0.18
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                        
Query: 75      ccaacatcacgccctttccccacctggatatattcatggtg 115
               ||||||||||| || || || ||||||||||| ||||||||
Sbjct: 6165500 ccaacatcacgtcccttaccaacctggatatactcatggtg 6165540
>dbj|AP003249.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0435B05
          Length = 150997

 Score = 42.1 bits (21), Expect = 0.18
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                       
Query: 75     ccaacatcacgccctttccccacctggatatattcatggtg 115
              ||||||||||| || || || ||||||||||| ||||||||
Sbjct: 150470 ccaacatcacgtcccttaccaacctggatatactcatggtg 150510
>dbj|AP003268.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0503C12
          Length = 147180

 Score = 42.1 bits (21), Expect = 0.18
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                      
Query: 75    ccaacatcacgccctttccccacctggatatattcatggtg 115
             ||||||||||| || || || ||||||||||| ||||||||
Sbjct: 51179 ccaacatcacgtcccttaccaacctggatatactcatggtg 51219
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
               scaffold, whole genome shotgun sequence
          Length = 17394610

 Score = 42.1 bits (21), Expect = 0.18
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                        
Query: 75      ccaacatcacgccctttccccacctggatatattcatggtg 115
               ||||||||||| || || || ||||||||||| ||||||||
Sbjct: 6068143 ccaacatcacgtcccttaccaacctggatatactcatggtg 6068183
  Database: Oryza_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:41 PM
  Number of letters in database: 2,800,419,916
  Number of sequences in database:  438,736
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 306,577
Number of Sequences: 438736
Number of extensions: 306577
Number of successful extensions: 4396
Number of sequences better than  0.5: 40
Number of HSP's better than  0.5 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4122
Number of HSP's gapped (non-prelim): 274
length of query: 335
length of database: 2,800,419,916
effective HSP length: 20
effective length of query: 315
effective length of database: 2,791,645,196
effective search space: 879368236740
effective search space used: 879368236740
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)