BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAF1g01.yg.2.1
(335 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_550490.1| Oryza sativa (japonica cultivar-group), mRNA 192 8e-047
gb|CB671521.1|CB671521 OSJNEe05C09.f OSJNEe Oryza sativa (j... 78 3e-012
dbj|AK069531.1| Oryza sativa (japonica cultivar-group) cDNA... 78 3e-012
ref|NM_187562.1| Oryza sativa (japonica cultivar-group), p... 78 3e-012
gb|AACV01012882.1| Oryza sativa (japonica cultivar-group) c... 74 5e-011
dbj|AP001552.1| Oryza sativa (japonica cultivar-group) gene... 74 5e-011
dbj|AP001389.1| Oryza sativa (japonica cultivar-group) geno... 74 5e-011
ref|NT_107230.2| Oryza sativa (japonica cultivar-group) 74 5e-011
gb|CH401209.1| Oryza sativa (japonica cultivar-group) chrom... 74 5e-011
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 74 5e-011
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 74 5e-011
gb|AC118980.2| Oryza sativa (japonica cultivar-group) chrom... 64 5e-008
gb|AACV01005773.1| Oryza sativa (japonica cultivar-group) c... 64 5e-008
ref|NT_107183.1| Oryza sativa (japonica cultivar-group) 64 5e-008
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 64 5e-008
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 64 5e-008
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 64 5e-008
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 64 5e-008
gb|CW883569.1|CW883569 Rice CISP Intron:I00_X00_F_PRSC1_002... 44 0.046
gb|CW883855.1|CW883855 Rice CISP Intron:I00_X00_F_PRSC1_002... 44 0.046
dbj|AK064446.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.046
gb|AACV01001413.1| Oryza sativa (japonica cultivar-group) c... 44 0.046
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 44 0.046
ref|NM_193211.1| Oryza sativa (japonica cultivar-group), p... 44 0.046
ref|NT_079926.2| Oryza sativa (japonica cultivar-group) 44 0.046
dbj|AP003447.2| Oryza sativa (japonica cultivar-group) geno... 44 0.046
dbj|AP003445.2| Oryza sativa (japonica cultivar-group) geno... 44 0.046
gb|CH401166.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.046
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.046
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 44 0.046
dbj|AK099782.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.18
dbj|AK120195.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.18
dbj|AK120402.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.18
gb|AACV01002367.1| Oryza sativa (japonica cultivar-group) c... 42 0.18
ref|NM_191270.1| Oryza sativa (japonica cultivar-group), p... 42 0.18
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 42 0.18
dbj|AP003249.3| Oryza sativa (japonica cultivar-group) geno... 42 0.18
dbj|AP003268.4| Oryza sativa (japonica cultivar-group) geno... 42 0.18
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.18
>ref|XM_550490.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 5316
Score = 192 bits (97), Expect = 8e-047
Identities = 205/243 (84%)
Strand = Plus / Minus
Query: 1 acacatctcggctgagaacttgctcaccattgcctccagcaactttcccctcaaatagtg 60
||||||||| ||| | |||||| ||||| || || || || |||||||| || || ||||
Sbjct: 3973 acacatctctgcttaaaacttgttcaccgttaccaccggctactttcccttcgaaaagtg 3914
Query: 61 caatttggttcaagccaacatcacgccctttccccacctggatatattcatggtgtgtga 120
| ||||||||||| |||||||| || |||||||| |||||||||||||||||||||||||
Sbjct: 3913 ctatttggttcaaaccaacatctcgtcctttcccaacctggatatattcatggtgtgtga 3854
Query: 121 tgttcccttggcgcaaagtcgaattgaacccggcatatatatcttcgcttatattaatca 180
| || || ||||||| |||||||||||| || |||||||||||||| |||||||||||||
Sbjct: 3853 tatttccctggcgcagagtcgaattgaatccagcatatatatcttcacttatattaatca 3794
Query: 181 ctcgagacgccttnnnaatgccacctcgggttatnnnaaatatccgatcaaaaacatcag 240
| | || || || |||||||||| |||||| |||||| ||||||||||||||||
Sbjct: 3793 ccccggatgctttgcttatgccacctctggttatatgaaatatgcgatcaaaaacatcag 3734
Query: 241 gat 243
|||
Sbjct: 3733 gat 3731
>gb|CB671521.1|CB671521 OSJNEe05C09.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe05C09 5', mRNA sequence
Length = 838
Score = 77.8 bits (39), Expect = 3e-012
Identities = 126/155 (81%)
Strand = Plus / Minus
Query: 9 cggctgagaacttgctcaccattgcctccagcaactttcccctcaaatagtgcaatttgg 68
|||||||| |||||||||||||| |||||||||||||| || || || |||||||| ||
Sbjct: 693 cggctgagcacttgctcaccatttcctccagcaacttttccttcgaacagtgcaatctga 634
Query: 69 ttcaagccaacatcacgccctttccccacctggatatattcatggtgtgtgatgttccct 128
|| | ||||| || | || || || ||||| ||||||||||| || || |||||||||
Sbjct: 633 ttaagaccaacgtctcttccctttccaacctgaatatattcatgatgagttatgttccct 574
Query: 129 tggcgcaaagtcgaattgaacccggcatatatatc 163
||||| ||| || |||||||| ||||| |||||
Sbjct: 573 aagcgcagagttgagttgaaccctgcataaatatc 539
>dbj|AK069531.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023020O14, full
insert sequence
Length = 2087
Score = 77.8 bits (39), Expect = 3e-012
Identities = 126/155 (81%)
Strand = Plus / Minus
Query: 9 cggctgagaacttgctcaccattgcctccagcaactttcccctcaaatagtgcaatttgg 68
|||||||| |||||||||||||| |||||||||||||| || || || |||||||| ||
Sbjct: 482 cggctgagcacttgctcaccatttcctccagcaacttttccttcgaacagtgcaatctga 423
Query: 69 ttcaagccaacatcacgccctttccccacctggatatattcatggtgtgtgatgttccct 128
|| | ||||| || | || || || ||||| ||||||||||| || || |||||||||
Sbjct: 422 ttaagaccaacgtctcttccctttccaacctgaatatattcatgatgagttatgttccct 363
Query: 129 tggcgcaaagtcgaattgaacccggcatatatatc 163
||||| ||| || |||||||| ||||| |||||
Sbjct: 362 aagcgcagagttgagttgaaccctgcataaatatc 328
>ref|NM_187562.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 6168
Score = 77.8 bits (39), Expect = 3e-012
Identities = 126/155 (81%)
Strand = Plus / Minus
Query: 9 cggctgagaacttgctcaccattgcctccagcaactttcccctcaaatagtgcaatttgg 68
|||||||| |||||||||||||| |||||||||||||| || || || |||||||| ||
Sbjct: 3512 cggctgagcacttgctcaccatttcctccagcaacttttccttcgaacagtgcaatctga 3453
Query: 69 ttcaagccaacatcacgccctttccccacctggatatattcatggtgtgtgatgttccct 128
|| | ||||| || | || || || ||||| ||||||||||| || || |||||||||
Sbjct: 3452 ttaagaccaacgtctcttccctttccaacctgaatatattcatgatgagttatgttccct 3393
Query: 129 tggcgcaaagtcgaattgaacccggcatatatatc 163
||||| ||| || |||||||| ||||| |||||
Sbjct: 3392 aagcgcagagttgagttgaaccctgcataaatatc 3358
>gb|AACV01012882.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg012882, whole
genome shotgun sequence
Length = 24683
Score = 73.8 bits (37), Expect = 5e-011
Identities = 49/53 (92%)
Strand = Plus / Minus
Query: 96 acctggatatattcatggtgtgtgatgttcccttggcgcaaagtcgaattgaa 148
|||||||||||||||||||||||||| || || ||||||| ||||||||||||
Sbjct: 10863 acctggatatattcatggtgtgtgatatttccctggcgcagagtcgaattgaa 10811
Score = 73.8 bits (37), Expect = 5e-011
Identities = 76/91 (83%)
Strand = Plus / Minus
Query: 153 gcatatatatcttcgcttatattaatcactcgagacgccttnnnaatgccacctcgggtt 212
|||||||||||||| |||||||||||||| | || || || |||||||||| ||||
Sbjct: 10374 gcatatatatcttcacttatattaatcaccccggatgctttgcttatgccacctctggtt 10315
Query: 213 atnnnaaatatccgatcaaaaacatcaggat 243
|| |||||| |||||||||||||||||||
Sbjct: 10314 atatgaaatatgcgatcaaaaacatcaggat 10284
Score = 61.9 bits (31), Expect = 2e-007
Identities = 82/99 (82%)
Strand = Plus / Minus
Query: 1 acacatctcggctgagaacttgctcaccattgcctccagcaactttcccctcaaatagtg 60
||||||||| ||| | |||||| ||||| || || || || |||||||| || || ||||
Sbjct: 11381 acacatctctgcttaaaacttgttcaccgttaccaccggctactttcccttcgaaaagtg 11322
Query: 61 caatttggttcaagccaacatcacgccctttccccacct 99
| ||||||||||| |||||||| || |||||||| ||||
Sbjct: 11321 ctatttggttcaaaccaacatctcgtcctttcccaacct 11283
>dbj|AP001552.1| Oryza sativa (japonica cultivar-group) geneomic DNA, chromosome 6, PAC
clone:P0029D06
Length = 150120
Score = 73.8 bits (37), Expect = 5e-011
Identities = 76/91 (83%)
Strand = Plus / Plus
Query: 153 gcatatatatcttcgcttatattaatcactcgagacgccttnnnaatgccacctcgggtt 212
|||||||||||||| |||||||||||||| | || || || |||||||||| ||||
Sbjct: 135979 gcatatatatcttcacttatattaatcaccccggatgctttgcttatgccacctctggtt 136038
Query: 213 atnnnaaatatccgatcaaaaacatcaggat 243
|| |||||| |||||||||||||||||||
Sbjct: 136039 atatgaaatatgcgatcaaaaacatcaggat 136069
Score = 73.8 bits (37), Expect = 5e-011
Identities = 49/53 (92%)
Strand = Plus / Plus
Query: 96 acctggatatattcatggtgtgtgatgttcccttggcgcaaagtcgaattgaa 148
|||||||||||||||||||||||||| || || ||||||| ||||||||||||
Sbjct: 135490 acctggatatattcatggtgtgtgatatttccctggcgcagagtcgaattgaa 135542
Score = 61.9 bits (31), Expect = 2e-007
Identities = 82/99 (82%)
Strand = Plus / Plus
Query: 1 acacatctcggctgagaacttgctcaccattgcctccagcaactttcccctcaaatagtg 60
||||||||| ||| | |||||| ||||| || || || || |||||||| || || ||||
Sbjct: 134972 acacatctctgcttaaaacttgttcaccgttaccaccggctactttcccttcgaaaagtg 135031
Query: 61 caatttggttcaagccaacatcacgccctttccccacct 99
| ||||||||||| |||||||| || |||||||| ||||
Sbjct: 135032 ctatttggttcaaaccaacatctcgtcctttcccaacct 135070
>dbj|AP001389.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0541H01
Length = 157519
Score = 73.8 bits (37), Expect = 5e-011
Identities = 76/91 (83%)
Strand = Plus / Plus
Query: 153 gcatatatatcttcgcttatattaatcactcgagacgccttnnnaatgccacctcgggtt 212
|||||||||||||| |||||||||||||| | || || || |||||||||| ||||
Sbjct: 12685 gcatatatatcttcacttatattaatcaccccggatgctttgcttatgccacctctggtt 12744
Query: 213 atnnnaaatatccgatcaaaaacatcaggat 243
|| |||||| |||||||||||||||||||
Sbjct: 12745 atatgaaatatgcgatcaaaaacatcaggat 12775
Score = 73.8 bits (37), Expect = 5e-011
Identities = 49/53 (92%)
Strand = Plus / Plus
Query: 96 acctggatatattcatggtgtgtgatgttcccttggcgcaaagtcgaattgaa 148
|||||||||||||||||||||||||| || || ||||||| ||||||||||||
Sbjct: 12196 acctggatatattcatggtgtgtgatatttccctggcgcagagtcgaattgaa 12248
Score = 61.9 bits (31), Expect = 2e-007
Identities = 82/99 (82%)
Strand = Plus / Plus
Query: 1 acacatctcggctgagaacttgctcaccattgcctccagcaactttcccctcaaatagtg 60
||||||||| ||| | |||||| ||||| || || || || |||||||| || || ||||
Sbjct: 11678 acacatctctgcttaaaacttgttcaccgttaccaccggctactttcccttcgaaaagtg 11737
Query: 61 caatttggttcaagccaacatcacgccctttccccacct 99
| ||||||||||| |||||||| || |||||||| ||||
Sbjct: 11738 ctatttggttcaaaccaacatctcgtcctttcccaacct 11776
>ref|NT_107230.2| Oryza sativa (japonica cultivar-group)
Length = 2805126
Score = 73.8 bits (37), Expect = 5e-011
Identities = 76/91 (83%)
Strand = Plus / Plus
Query: 153 gcatatatatcttcgcttatattaatcactcgagacgccttnnnaatgccacctcgggtt 212
|||||||||||||| |||||||||||||| | || || || |||||||||| ||||
Sbjct: 693128 gcatatatatcttcacttatattaatcaccccggatgctttgcttatgccacctctggtt 693187
Query: 213 atnnnaaatatccgatcaaaaacatcaggat 243
|| |||||| |||||||||||||||||||
Sbjct: 693188 atatgaaatatgcgatcaaaaacatcaggat 693218
Score = 73.8 bits (37), Expect = 5e-011
Identities = 49/53 (92%)
Strand = Plus / Plus
Query: 96 acctggatatattcatggtgtgtgatgttcccttggcgcaaagtcgaattgaa 148
|||||||||||||||||||||||||| || || ||||||| ||||||||||||
Sbjct: 692639 acctggatatattcatggtgtgtgatatttccctggcgcagagtcgaattgaa 692691
Score = 61.9 bits (31), Expect = 2e-007
Identities = 82/99 (82%)
Strand = Plus / Plus
Query: 1 acacatctcggctgagaacttgctcaccattgcctccagcaactttcccctcaaatagtg 60
||||||||| ||| | |||||| ||||| || || || || |||||||| || || ||||
Sbjct: 692121 acacatctctgcttaaaacttgttcaccgttaccaccggctactttcccttcgaaaagtg 692180
Query: 61 caatttggttcaagccaacatcacgccctttccccacct 99
| ||||||||||| |||||||| || |||||||| ||||
Sbjct: 692181 ctatttggttcaaaccaacatctcgtcctttcccaacct 692219
>gb|CH401209.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000046
genomic scaffold, whole genome shotgun sequence
Length = 8607552
Score = 73.8 bits (37), Expect = 5e-011
Identities = 76/91 (83%)
Strand = Plus / Plus
Query: 153 gcatatatatcttcgcttatattaatcactcgagacgccttnnnaatgccacctcgggtt 212
|||||||||||||| |||||||||||||| | || || || |||||||||| ||||
Sbjct: 621947 gcatatatatcttcacttatattaatcaccccggatgctttgcttatgccacctctggtt 622006
Query: 213 atnnnaaatatccgatcaaaaacatcaggat 243
|| |||||| |||||||||||||||||||
Sbjct: 622007 atatgaaatatgcgatcaaaaacatcaggat 622037
Score = 73.8 bits (37), Expect = 5e-011
Identities = 49/53 (92%)
Strand = Plus / Plus
Query: 96 acctggatatattcatggtgtgtgatgttcccttggcgcaaagtcgaattgaa 148
|||||||||||||||||||||||||| || || ||||||| ||||||||||||
Sbjct: 621458 acctggatatattcatggtgtgtgatatttccctggcgcagagtcgaattgaa 621510
Score = 61.9 bits (31), Expect = 2e-007
Identities = 82/99 (82%)
Strand = Plus / Plus
Query: 1 acacatctcggctgagaacttgctcaccattgcctccagcaactttcccctcaaatagtg 60
||||||||| ||| | |||||| ||||| || || || || |||||||| || || ||||
Sbjct: 620940 acacatctctgcttaaaacttgttcaccgttaccaccggctactttcccttcgaaaagtg 620999
Query: 61 caatttggttcaagccaacatcacgccctttccccacct 99
| ||||||||||| |||||||| || |||||||| ||||
Sbjct: 621000 ctatttggttcaaaccaacatctcgtcctttcccaacct 621038
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 73.8 bits (37), Expect = 5e-011
Identities = 76/91 (83%)
Strand = Plus / Plus
Query: 153 gcatatatatcttcgcttatattaatcactcgagacgccttnnnaatgccacctcgggtt 212
|||||||||||||| |||||||||||||| | || || || |||||||||| ||||
Sbjct: 621947 gcatatatatcttcacttatattaatcaccccggatgctttgcttatgccacctctggtt 622006
Query: 213 atnnnaaatatccgatcaaaaacatcaggat 243
|| |||||| |||||||||||||||||||
Sbjct: 622007 atatgaaatatgcgatcaaaaacatcaggat 622037
Score = 73.8 bits (37), Expect = 5e-011
Identities = 49/53 (92%)
Strand = Plus / Plus
Query: 96 acctggatatattcatggtgtgtgatgttcccttggcgcaaagtcgaattgaa 148
|||||||||||||||||||||||||| || || ||||||| ||||||||||||
Sbjct: 621458 acctggatatattcatggtgtgtgatatttccctggcgcagagtcgaattgaa 621510
Score = 61.9 bits (31), Expect = 2e-007
Identities = 82/99 (82%)
Strand = Plus / Plus
Query: 1 acacatctcggctgagaacttgctcaccattgcctccagcaactttcccctcaaatagtg 60
||||||||| ||| | |||||| ||||| || || || || |||||||| || || ||||
Sbjct: 620940 acacatctctgcttaaaacttgttcaccgttaccaccggctactttcccttcgaaaagtg 620999
Query: 61 caatttggttcaagccaacatcacgccctttccccacct 99
| ||||||||||| |||||||| || |||||||| ||||
Sbjct: 621000 ctatttggttcaaaccaacatctcgtcctttcccaacct 621038
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
complete sequence
Length = 30731886
Score = 73.8 bits (37), Expect = 5e-011
Identities = 76/91 (83%)
Strand = Plus / Plus
Query: 153 gcatatatatcttcgcttatattaatcactcgagacgccttnnnaatgccacctcgggtt 212
|||||||||||||| |||||||||||||| | || || || |||||||||| ||||
Sbjct: 729551 gcatatatatcttcacttatattaatcaccccggatgctttgcttatgccacctctggtt 729610
Query: 213 atnnnaaatatccgatcaaaaacatcaggat 243
|| |||||| |||||||||||||||||||
Sbjct: 729611 atatgaaatatgcgatcaaaaacatcaggat 729641
Score = 73.8 bits (37), Expect = 5e-011
Identities = 49/53 (92%)
Strand = Plus / Plus
Query: 96 acctggatatattcatggtgtgtgatgttcccttggcgcaaagtcgaattgaa 148
|||||||||||||||||||||||||| || || ||||||| ||||||||||||
Sbjct: 729062 acctggatatattcatggtgtgtgatatttccctggcgcagagtcgaattgaa 729114
Score = 61.9 bits (31), Expect = 2e-007
Identities = 82/99 (82%)
Strand = Plus / Plus
Query: 1 acacatctcggctgagaacttgctcaccattgcctccagcaactttcccctcaaatagtg 60
||||||||| ||| | |||||| ||||| || || || || |||||||| || || ||||
Sbjct: 728544 acacatctctgcttaaaacttgttcaccgttaccaccggctactttcccttcgaaaagtg 728603
Query: 61 caatttggttcaagccaacatcacgccctttccccacct 99
| ||||||||||| |||||||| || |||||||| ||||
Sbjct: 728604 ctatttggttcaaaccaacatctcgtcctttcccaacct 728642
>gb|AC118980.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1263H11,
complete sequence
Length = 126827
Score = 63.9 bits (32), Expect = 5e-008
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 9 cggctgagaacttgctcaccattgcctccagcaactttcccctcaaatagtgcaat 64
|||||||| |||||||||||||| |||||||||||||| || || || ||||||||
Sbjct: 69765 cggctgagcacttgctcaccatttcctccagcaacttttccttcgaacagtgcaat 69710
>gb|AACV01005773.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg005773, whole
genome shotgun sequence
Length = 82514
Score = 63.9 bits (32), Expect = 5e-008
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 9 cggctgagaacttgctcaccattgcctccagcaactttcccctcaaatagtgcaat 64
|||||||| |||||||||||||| |||||||||||||| || || || ||||||||
Sbjct: 21792 cggctgagcacttgctcaccatttcctccagcaacttttccttcgaacagtgcaat 21737
>ref|NT_107183.1| Oryza sativa (japonica cultivar-group)
Length = 1680144
Score = 63.9 bits (32), Expect = 5e-008
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 9 cggctgagaacttgctcaccattgcctccagcaactttcccctcaaatagtgcaat 64
|||||||| |||||||||||||| |||||||||||||| || || || ||||||||
Sbjct: 1049548 cggctgagcacttgctcaccatttcctccagcaacttttccttcgaacagtgcaat 1049493
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
scaffold, whole genome shotgun sequence
Length = 13858245
Score = 63.9 bits (32), Expect = 5e-008
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 9 cggctgagaacttgctcaccattgcctccagcaactttcccctcaaatagtgcaat 64
|||||||| |||||||||||||| |||||||||||||| || || || ||||||||
Sbjct: 1047727 cggctgagcacttgctcaccatttcctccagcaacttttccttcgaacagtgcaat 1047672
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 63.9 bits (32), Expect = 5e-008
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 9 cggctgagaacttgctcaccattgcctccagcaactttcccctcaaatagtgcaat 64
|||||||| |||||||||||||| |||||||||||||| || || || ||||||||
Sbjct: 1240089 cggctgagcacttgctcaccatttcctccagcaacttttccttcgaacagtgcaat 1240034
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 63.9 bits (32), Expect = 5e-008
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 9 cggctgagaacttgctcaccattgcctccagcaactttcccctcaaatagtgcaat 64
|||||||| |||||||||||||| |||||||||||||| || || || ||||||||
Sbjct: 1049548 cggctgagcacttgctcaccatttcctccagcaacttttccttcgaacagtgcaat 1049493
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 63.9 bits (32), Expect = 5e-008
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 9 cggctgagaacttgctcaccattgcctccagcaactttcccctcaaatagtgcaat 64
|||||||| |||||||||||||| |||||||||||||| || || || ||||||||
Sbjct: 1049550 cggctgagcacttgctcaccatttcctccagcaacttttccttcgaacagtgcaat 1049495
>gb|CW883569.1|CW883569 Rice CISP Intron:I00_X00_F_PRSC1_002_RICE_AZUC AZUC Oryza sativa
(japonica cultivar-group) genomic, DNA sequence
Length = 336
Score = 44.1 bits (22), Expect = 0.046
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 75 ccaacatcacgccctttccccacctggatatattcatg 112
||||||||||| ||||| |||| ||| |||||||||||
Sbjct: 98 ccaacatcacgtcctttacccagctgtatatattcatg 61
>gb|CW883855.1|CW883855 Rice CISP Intron:I00_X00_F_PRSC1_002_RICE_CT99 CT99 Oryza sativa
(japonica cultivar-group) genomic, DNA sequence
Length = 500
Score = 44.1 bits (22), Expect = 0.046
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 75 ccaacatcacgccctttccccacctggatatattcatg 112
||||||||||| ||||| |||| ||| |||||||||||
Sbjct: 134 ccaacatcacgtcctttacccagctgtatatattcatg 97
>dbj|AK064446.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-110-F01, full
insert sequence
Length = 1923
Score = 44.1 bits (22), Expect = 0.046
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 75 ccaacatcacgccctttccccacctggatatattcatg 112
||||||||||| ||||| |||| ||| |||||||||||
Sbjct: 156 ccaacatcacgtcctttacccagctgtatatattcatg 119
>gb|AACV01001413.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg001413, whole
genome shotgun sequence
Length = 32302
Score = 44.1 bits (22), Expect = 0.046
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 75 ccaacatcacgccctttccccacctggatatattcatg 112
||||||||||| ||||| |||| ||| |||||||||||
Sbjct: 8956 ccaacatcacgtcctttacccagctgtatatattcatg 8993
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 44.1 bits (22), Expect = 0.046
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 75 ccaacatcacgccctttccccacctggatatattcatg 112
||||||||||| ||||| |||| ||| |||||||||||
Sbjct: 19380708 ccaacatcacgtcctttacccagctgtatatattcatg 19380745
Score = 42.1 bits (21), Expect = 0.18
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 75 ccaacatcacgccctttccccacctggatatattcatggtg 115
||||||||||| || || || ||||||||||| ||||||||
Sbjct: 31718117 ccaacatcacgtcccttaccaacctggatatactcatggtg 31718157
>ref|NM_193211.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 5634
Score = 44.1 bits (22), Expect = 0.046
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 75 ccaacatcacgccctttccccacctggatatattcatg 112
||||||||||| ||||| |||| ||| |||||||||||
Sbjct: 4205 ccaacatcacgtcctttacccagctgtatatattcatg 4168
>ref|NT_079926.2| Oryza sativa (japonica cultivar-group)
Length = 8469246
Score = 44.1 bits (22), Expect = 0.046
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 75 ccaacatcacgccctttccccacctggatatattcatg 112
||||||||||| ||||| |||| ||| |||||||||||
Sbjct: 2298940 ccaacatcacgtcctttacccagctgtatatattcatg 2298977
>dbj|AP003447.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:OJ1619_F12
Length = 133028
Score = 44.1 bits (22), Expect = 0.046
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 75 ccaacatcacgccctttccccacctggatatattcatg 112
||||||||||| ||||| |||| ||| |||||||||||
Sbjct: 121612 ccaacatcacgtcctttacccagctgtatatattcatg 121649
>dbj|AP003445.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:OJ1029_F04
Length = 141834
Score = 44.1 bits (22), Expect = 0.046
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 75 ccaacatcacgccctttccccacctggatatattcatg 112
||||||||||| ||||| |||| ||| |||||||||||
Sbjct: 29996 ccaacatcacgtcctttacccagctgtatatattcatg 30033
>gb|CH401166.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000003 genomic
scaffold, whole genome shotgun sequence
Length = 8539496
Score = 44.1 bits (22), Expect = 0.046
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 75 ccaacatcacgccctttccccacctggatatattcatg 112
||||||||||| ||||| |||| ||| |||||||||||
Sbjct: 2432371 ccaacatcacgtcctttacccagctgtatatattcatg 2432408
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 44.1 bits (22), Expect = 0.046
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 75 ccaacatcacgccctttccccacctggatatattcatg 112
||||||||||| ||||| |||| ||| |||||||||||
Sbjct: 19057494 ccaacatcacgtcctttacccagctgtatatattcatg 19057531
Score = 42.1 bits (21), Expect = 0.18
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 75 ccaacatcacgccctttccccacctggatatattcatggtg 115
||||||||||| || || || ||||||||||| ||||||||
Sbjct: 31269864 ccaacatcacgtcccttaccaacctggatatactcatggtg 31269904
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 44.1 bits (22), Expect = 0.046
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 75 ccaacatcacgccctttccccacctggatatattcatg 112
||||||||||| ||||| |||| ||| |||||||||||
Sbjct: 19301991 ccaacatcacgtcctttacccagctgtatatattcatg 19302028
Score = 42.1 bits (21), Expect = 0.18
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 75 ccaacatcacgccctttccccacctggatatattcatggtg 115
||||||||||| || || || ||||||||||| ||||||||
Sbjct: 31637447 ccaacatcacgtcccttaccaacctggatatactcatggtg 31637487
>dbj|AK099782.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013095O05, full
insert sequence
Length = 5774
Score = 42.1 bits (21), Expect = 0.18
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 75 ccaacatcacgccctttccccacctggatatattcatggtg 115
||||||||||| || || || ||||||||||| ||||||||
Sbjct: 4085 ccaacatcacgtcccttaccaacctggatatactcatggtg 4045
>dbj|AK120195.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013036H01, full
insert sequence
Length = 5949
Score = 42.1 bits (21), Expect = 0.18
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 75 ccaacatcacgccctttccccacctggatatattcatggtg 115
||||||||||| || || || ||||||||||| ||||||||
Sbjct: 3989 ccaacatcacgtcccttaccaacctggatatactcatggtg 3949
>dbj|AK120402.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013088I17, full
insert sequence
Length = 5396
Score = 42.1 bits (21), Expect = 0.18
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 75 ccaacatcacgccctttccccacctggatatattcatggtg 115
||||||||||| || || || ||||||||||| ||||||||
Sbjct: 3674 ccaacatcacgtcccttaccaacctggatatactcatggtg 3634
>gb|AACV01002367.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002367, whole
genome shotgun sequence
Length = 23038
Score = 42.1 bits (21), Expect = 0.18
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 75 ccaacatcacgccctttccccacctggatatattcatggtg 115
||||||||||| || || || ||||||||||| ||||||||
Sbjct: 11926 ccaacatcacgtcccttaccaacctggatatactcatggtg 11886
>ref|NM_191270.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 5373
Score = 42.1 bits (21), Expect = 0.18
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 75 ccaacatcacgccctttccccacctggatatattcatggtg 115
||||||||||| || || || ||||||||||| ||||||||
Sbjct: 3950 ccaacatcacgtcccttaccaacctggatatactcatggtg 3910
>ref|NT_079927.2| Oryza sativa (japonica cultivar-group)
Length = 14818989
Score = 42.1 bits (21), Expect = 0.18
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 75 ccaacatcacgccctttccccacctggatatattcatggtg 115
||||||||||| || || || ||||||||||| ||||||||
Sbjct: 6165500 ccaacatcacgtcccttaccaacctggatatactcatggtg 6165540
>dbj|AP003249.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0435B05
Length = 150997
Score = 42.1 bits (21), Expect = 0.18
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 75 ccaacatcacgccctttccccacctggatatattcatggtg 115
||||||||||| || || || ||||||||||| ||||||||
Sbjct: 150470 ccaacatcacgtcccttaccaacctggatatactcatggtg 150510
>dbj|AP003268.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0503C12
Length = 147180
Score = 42.1 bits (21), Expect = 0.18
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 75 ccaacatcacgccctttccccacctggatatattcatggtg 115
||||||||||| || || || ||||||||||| ||||||||
Sbjct: 51179 ccaacatcacgtcccttaccaacctggatatactcatggtg 51219
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 42.1 bits (21), Expect = 0.18
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 75 ccaacatcacgccctttccccacctggatatattcatggtg 115
||||||||||| || || || ||||||||||| ||||||||
Sbjct: 6068143 ccaacatcacgtcccttaccaacctggatatactcatggtg 6068183
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 306,577
Number of Sequences: 438736
Number of extensions: 306577
Number of successful extensions: 4396
Number of sequences better than 0.5: 40
Number of HSP's better than 0.5 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4122
Number of HSP's gapped (non-prelim): 274
length of query: 335
length of database: 2,800,419,916
effective HSP length: 20
effective length of query: 315
effective length of database: 2,791,645,196
effective search space: 879368236740
effective search space used: 879368236740
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)