BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAF14f01.yg.2.1
(319 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AQ872381.1|AQ872381 nbeb0048C10r CUGI Rice BAC Library (... 74 5e-011
dbj|AP003513.2| Oryza sativa (japonica cultivar-group) geno... 74 5e-011
dbj|AP003569.3| Oryza sativa (japonica cultivar-group) geno... 74 5e-011
gb|AACV01013347.1| Oryza sativa (japonica cultivar-group) c... 74 5e-011
ref|NT_079873.2| Oryza sativa (japonica cultivar-group) 74 5e-011
gb|CH401209.1| Oryza sativa (japonica cultivar-group) chrom... 74 5e-011
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 74 5e-011
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 74 5e-011
>gb|AQ872381.1|AQ872381 nbeb0048C10r CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0048C10r, DNA sequence
Length = 781
Score = 73.8 bits (37), Expect = 5e-011
Identities = 46/49 (93%)
Strand = Plus / Minus
Query: 41 cctcagggctgatgcttggattatagccaagacccattacatgccatga 89
||||||| ||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 495 cctcaggactgatgcttggattatacccaaggcccattacatgccatga 447
>dbj|AP003513.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0690H04
Length = 137319
Score = 73.8 bits (37), Expect = 5e-011
Identities = 46/49 (93%)
Strand = Plus / Plus
Query: 41 cctcagggctgatgcttggattatagccaagacccattacatgccatga 89
||||||| ||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 133186 cctcaggactgatgcttggattatacccaaggcccattacatgccatga 133234
Score = 42.1 bits (21), Expect = 0.17
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 177 catttccatatactgatggaacaattctgtgcaaccatccc 217
||||||||| ||||||||||||| || ||||| |||||||
Sbjct: 134382 catttccatgtactgatggaacagctccgtgcagccatccc 134422
>dbj|AP003569.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0425F05
Length = 162858
Score = 73.8 bits (37), Expect = 5e-011
Identities = 46/49 (93%)
Strand = Plus / Plus
Query: 41 cctcagggctgatgcttggattatagccaagacccattacatgccatga 89
||||||| ||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 50936 cctcaggactgatgcttggattatacccaaggcccattacatgccatga 50984
Score = 42.1 bits (21), Expect = 0.17
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 177 catttccatatactgatggaacaattctgtgcaaccatccc 217
||||||||| ||||||||||||| || ||||| |||||||
Sbjct: 52132 catttccatgtactgatggaacagctccgtgcagccatccc 52172
>gb|AACV01013347.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg013347, whole
genome shotgun sequence
Length = 24369
Score = 73.8 bits (37), Expect = 5e-011
Identities = 46/49 (93%)
Strand = Plus / Minus
Query: 41 cctcagggctgatgcttggattatagccaagacccattacatgccatga 89
||||||| ||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 3693 cctcaggactgatgcttggattatacccaaggcccattacatgccatga 3645
Score = 42.1 bits (21), Expect = 0.17
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 177 catttccatatactgatggaacaattctgtgcaaccatccc 217
||||||||| ||||||||||||| || ||||| |||||||
Sbjct: 2497 catttccatgtactgatggaacagctccgtgcagccatccc 2457
>ref|NT_079873.2| Oryza sativa (japonica cultivar-group)
Length = 5116111
Score = 73.8 bits (37), Expect = 5e-011
Identities = 46/49 (93%)
Strand = Plus / Plus
Query: 41 cctcagggctgatgcttggattatagccaagacccattacatgccatga 89
||||||| ||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 2308390 cctcaggactgatgcttggattatacccaaggcccattacatgccatga 2308438
Score = 42.1 bits (21), Expect = 0.17
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 177 catttccatatactgatggaacaattctgtgcaaccatccc 217
||||||||| ||||||||||||| || ||||| |||||||
Sbjct: 2309586 catttccatgtactgatggaacagctccgtgcagccatccc 2309626
>gb|CH401209.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000046 genomic
scaffold, whole genome shotgun sequence
Length = 8607552
Score = 73.8 bits (37), Expect = 5e-011
Identities = 46/49 (93%)
Strand = Plus / Plus
Query: 41 cctcagggctgatgcttggattatagccaagacccattacatgccatga 89
||||||| ||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 6546762 cctcaggactgatgcttggattatacccaaggcccattacatgccatga 6546810
Score = 42.1 bits (21), Expect = 0.17
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 177 catttccatatactgatggaacaattctgtgcaaccatccc 217
||||||||| ||||||||||||| || ||||| |||||||
Sbjct: 6547958 catttccatgtactgatggaacagctccgtgcagccatccc 6547998
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 73.8 bits (37), Expect = 5e-011
Identities = 46/49 (93%)
Strand = Plus / Plus
Query: 41 cctcagggctgatgcttggattatagccaagacccattacatgccatga 89
||||||| ||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 6546762 cctcaggactgatgcttggattatacccaaggcccattacatgccatga 6546810
Score = 42.1 bits (21), Expect = 0.17
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 177 catttccatatactgatggaacaattctgtgcaaccatccc 217
||||||||| ||||||||||||| || ||||| |||||||
Sbjct: 6547958 catttccatgtactgatggaacagctccgtgcagccatccc 6547998
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 73.8 bits (37), Expect = 5e-011
Identities = 46/49 (93%)
Strand = Plus / Plus
Query: 41 cctcagggctgatgcttggattatagccaagacccattacatgccatga 89
||||||| ||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 6616810 cctcaggactgatgcttggattatacccaaggcccattacatgccatga 6616858
Score = 42.1 bits (21), Expect = 0.17
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 177 catttccatatactgatggaacaattctgtgcaaccatccc 217
||||||||| ||||||||||||| || ||||| |||||||
Sbjct: 6618006 catttccatgtactgatggaacagctccgtgcagccatccc 6618046
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 199,596
Number of Sequences: 438736
Number of extensions: 199596
Number of successful extensions: 2637
Number of sequences better than 0.5: 8
Number of HSP's better than 0.5 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2586
Number of HSP's gapped (non-prelim): 51
length of query: 319
length of database: 2,800,419,916
effective HSP length: 20
effective length of query: 299
effective length of database: 2,791,645,196
effective search space: 834701913604
effective search space used: 834701913604
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)