BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAF13b04.yg.2.1
(370 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK069531.1| Oryza sativa (japonica cultivar-group) cDNA... 349 7e-094
ref|NM_187562.1| Oryza sativa (japonica cultivar-group), p... 349 7e-094
gb|AU062726.1|AU062726 AU062726 Rice callus Oryza sativa (j... 299 5e-079
gb|AZ135659.1|AZ135659 OSJNBb0116N17r CUGI Rice BAC Library... 172 8e-041
gb|AC118980.2| Oryza sativa (japonica cultivar-group) chrom... 172 8e-041
gb|AACV01005773.1| Oryza sativa (japonica cultivar-group) c... 172 8e-041
ref|NT_107183.1| Oryza sativa (japonica cultivar-group) 172 8e-041
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 172 8e-041
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 172 8e-041
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 172 8e-041
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 172 8e-041
dbj|AK059373.1| Oryza sativa (japonica cultivar-group) cDNA... 151 3e-034
gb|AQ868648.1|AQ868648 nbeb0030I08r CUGI Rice BAC Library (... 98 4e-018
gb|AQ859945.1|AQ859945 nbeb0013F14f CUGI Rice BAC Library (... 70 9e-010
gb|CB671521.1|CB671521 OSJNEe05C09.f OSJNEe Oryza sativa (j... 50 8e-004
dbj|BA000029.3| Oryza sativa (japonica cultivar-group) mito... 50 8e-004
dbj|AP004563.1| Oryza sativa (japonica cultivar-group) chro... 42 0.20
dbj|AP006049.2| Oryza sativa (japonica cultivar-group) geno... 42 0.20
dbj|AP005649.3| Oryza sativa (japonica cultivar-group) geno... 42 0.20
gb|AACV01003332.1| Oryza sativa (japonica cultivar-group) c... 42 0.20
gb|AACV01018837.1| Oryza sativa (japonica cultivar-group) c... 42 0.20
ref|NT_107175.1| Oryza sativa (japonica cultivar-group) 42 0.20
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 42 0.20
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.20
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.20
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.20
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.20
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 42 0.20
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 42 0.20
>dbj|AK069531.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023020O14, full
insert sequence
Length = 2087
Score = 349 bits (176), Expect = 7e-094
Identities = 298/336 (88%), Gaps = 2/336 (0%)
Strand = Plus / Plus
Query: 17 gtacatatttctctatgggaaaatgtatctggccttatctggtgttggagaatcaattca 76
||||||||||||||||||||||| |||||||| || ||||| |||||||||||||||||
Sbjct: 588 gtacatatttctctatgggaaaacctatctggctttgtctggagttggagaatcaattca 647
Query: 77 aaatagagcggatatactgcagaacgcagccttgaatgctgctctgaacactcaatttct 136
||||| | ||||||| |||||||| ||||||||||||| ||||||||||| || |||||
Sbjct: 648 gaatagggtggatatattgcagaacacagccttgaatgcagctctgaacacacagtttct 707
Query: 137 tttccagattggtgtatttactgctgttcccatgattcttggtttcatccttgaatcagg 196
||||||||||||||||||||||||| |||| |||||||| ||||||||||| |||| ||
Sbjct: 708 tttccagattggtgtatttactgctattcctatgattctgggtttcatcctggaatttgg 767
Query: 197 tgttttaacggcttttgttcag-tttattacaatgcagttccaaatgtgctctgtatttt 255
||| || |||||||||| |||| || || || |||||||||||| | |||||||||||||
Sbjct: 768 tgtcttgacggcttttg-tcagcttcatcacgatgcagttccaactttgctctgtatttt 826
Query: 256 ttactttctcacttggaacaagaacccactactttggccgtgcaatattacatggaggtg 315
|||||||||| || || ||||| |||||||| |||||||| ||||| ||||||| ||||
Sbjct: 827 ttactttctccctgggtacaaggacccactattttggccgcacaatactacatggtggtg 886
Query: 316 caaagtatagagcaaccggtagaggttttgtggtac 351
|||||||||||||||||||||| |||||||||||||
Sbjct: 887 caaagtatagagcaaccggtaggggttttgtggtac 922
>ref|NM_187562.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 6168
Score = 349 bits (176), Expect = 7e-094
Identities = 298/336 (88%), Gaps = 2/336 (0%)
Strand = Plus / Plus
Query: 17 gtacatatttctctatgggaaaatgtatctggccttatctggtgttggagaatcaattca 76
||||||||||||||||||||||| |||||||| || ||||| |||||||||||||||||
Sbjct: 3618 gtacatatttctctatgggaaaacctatctggctttgtctggagttggagaatcaattca 3677
Query: 77 aaatagagcggatatactgcagaacgcagccttgaatgctgctctgaacactcaatttct 136
||||| | ||||||| |||||||| ||||||||||||| ||||||||||| || |||||
Sbjct: 3678 gaatagggtggatatattgcagaacacagccttgaatgcagctctgaacacacagtttct 3737
Query: 137 tttccagattggtgtatttactgctgttcccatgattcttggtttcatccttgaatcagg 196
||||||||||||||||||||||||| |||| |||||||| ||||||||||| |||| ||
Sbjct: 3738 tttccagattggtgtatttactgctattcctatgattctgggtttcatcctggaatttgg 3797
Query: 197 tgttttaacggcttttgttcag-tttattacaatgcagttccaaatgtgctctgtatttt 255
||| || |||||||||| |||| || || || |||||||||||| | |||||||||||||
Sbjct: 3798 tgtcttgacggcttttg-tcagcttcatcacgatgcagttccaactttgctctgtatttt 3856
Query: 256 ttactttctcacttggaacaagaacccactactttggccgtgcaatattacatggaggtg 315
|||||||||| || || ||||| |||||||| |||||||| ||||| ||||||| ||||
Sbjct: 3857 ttactttctccctgggtacaaggacccactattttggccgcacaatactacatggtggtg 3916
Query: 316 caaagtatagagcaaccggtagaggttttgtggtac 351
|||||||||||||||||||||| |||||||||||||
Sbjct: 3917 caaagtatagagcaaccggtaggggttttgtggtac 3952
>gb|AU062726.1|AU062726 AU062726 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C30350_1A, mRNA sequence
Length = 352
Score = 299 bits (151), Expect = 5e-079
Identities = 280/322 (86%), Gaps = 2/322 (0%)
Strand = Plus / Plus
Query: 17 gtacatatttctctatgggaaaatgtatctggccttatctggtgttggagaatcaattca 76
||||||||||||||||||||||| |||||||| || ||||| |||||||||||||||||
Sbjct: 2 gtacatatttctctatgggaaaacctatctggctttgtctggagttggagaatcaattca 61
Query: 77 aaatagagcggatatactgcagaacgcagccttgaatgctgctctgaacactcaatttct 136
||||| | ||||||| |||||||| |||| |||||||| ||||||||||| || |||||
Sbjct: 62 gaatagggtggatatattgcagaacacagcnttgaatgcagctctgaacacacagtttct 121
Query: 137 tttccagattggtgtatttactgctgttcccatgattcttggtttcatccttgaatcagg 196
||||||||||||||||||||||||| ||| |||||||| ||||||||||| |||| ||
Sbjct: 122 tttccagattggtgtatttactgctattcgnatgattctnggtttcatcctggaatttgg 181
Query: 197 tgttttaacggcttttgttcag-tttattacaatgcagttccaaatgtgctctgtatttt 255
||| || |||||||||| |||| || || || |||||||||||| | |||||||||||||
Sbjct: 182 tgtcttgacggcttttg-tcagcttcatcacgatgcagttccaactttgctctgtatttt 240
Query: 256 ttactttctcacttggaacaagaacccactactttggccgtgcaatattacatggaggtg 315
| ||| | || || || ||||| |||||||| |||||||| ||||| ||||||| ||||
Sbjct: 241 taactntntccctgggtacaaggacccactattttggccgcacaatactacatggtggtg 300
Query: 316 caaagtatagagcaaccggtag 337
||||||||||||||||||||||
Sbjct: 301 caaagtatagagcaaccggtag 322
>gb|AZ135659.1|AZ135659 OSJNBb0116N17r CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone OSJNBb0116N17r, DNA
sequence
Length = 809
Score = 172 bits (87), Expect = 8e-041
Identities = 126/139 (90%)
Strand = Plus / Minus
Query: 54 tctggtgttggagaatcaattcaaaatagagcggatatactgcagaacgcagccttgaat 113
||||| ||||||||||||||||| ||||| | ||||||| |||||||| |||||||||||
Sbjct: 342 tctggagttggagaatcaattcagaatagggtggatatattgcagaacacagccttgaat 283
Query: 114 gctgctctgaacactcaatttcttttccagattggtgtatttactgctgttcccatgatt 173
|| ||||||||||| || |||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 282 gcagctctgaacacacagtttcttttccagattggtgtatttactgctattcctatgatt 223
Query: 174 cttggtttcatccttgaat 192
|| ||||||||||| ||||
Sbjct: 222 ctgggtttcatcctggaat 204
>gb|AC118980.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1263H11,
complete sequence
Length = 126827
Score = 172 bits (87), Expect = 8e-041
Identities = 126/139 (90%)
Strand = Plus / Plus
Query: 54 tctggtgttggagaatcaattcaaaatagagcggatatactgcagaacgcagccttgaat 113
||||| ||||||||||||||||| ||||| | ||||||| |||||||| |||||||||||
Sbjct: 71869 tctggagttggagaatcaattcagaatagggtggatatattgcagaacacagccttgaat 71928
Query: 114 gctgctctgaacactcaatttcttttccagattggtgtatttactgctgttcccatgatt 173
|| ||||||||||| || |||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 71929 gcagctctgaacacacagtttcttttccagattggtgtatttactgctattcctatgatt 71988
Query: 174 cttggtttcatccttgaat 192
|| ||||||||||| ||||
Sbjct: 71989 ctgggtttcatcctggaat 72007
Score = 97.6 bits (49), Expect = 4e-018
Identities = 82/93 (88%)
Strand = Plus / Plus
Query: 228 atgcagttccaaatgtgctctgtattttttactttctcacttggaacaagaacccactac 287
|||||||||||| | ||||||||||||||||||||||| || || ||||| ||||||||
Sbjct: 72440 atgcagttccaactttgctctgtattttttactttctccctgggtacaaggacccactat 72499
Query: 288 tttggccgtgcaatattacatggaggtgcaaag 320
|||||||| ||||| ||||||| |||||||||
Sbjct: 72500 tttggccgcacaatactacatggtggtgcaaag 72532
Score = 58.0 bits (29), Expect = 3e-006
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 319 agtatagagcaaccggtagaggttttgtggtac 351
||||||||||||||||||| |||||||||||||
Sbjct: 72616 agtatagagcaaccggtaggggttttgtggtac 72648
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 17 gtacatatttctctatgggaaaatgtatctgg 48
||||||||||||||||||||||| |||||||
Sbjct: 71240 gtacatatttctctatgggaaaacctatctgg 71271
>gb|AACV01005773.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg005773, whole
genome shotgun sequence
Length = 82514
Score = 172 bits (87), Expect = 8e-041
Identities = 126/139 (90%)
Strand = Plus / Plus
Query: 54 tctggtgttggagaatcaattcaaaatagagcggatatactgcagaacgcagccttgaat 113
||||| ||||||||||||||||| ||||| | ||||||| |||||||| |||||||||||
Sbjct: 23896 tctggagttggagaatcaattcagaatagggtggatatattgcagaacacagccttgaat 23955
Query: 114 gctgctctgaacactcaatttcttttccagattggtgtatttactgctgttcccatgatt 173
|| ||||||||||| || |||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 23956 gcagctctgaacacacagtttcttttccagattggtgtatttactgctattcctatgatt 24015
Query: 174 cttggtttcatccttgaat 192
|| ||||||||||| ||||
Sbjct: 24016 ctgggtttcatcctggaat 24034
Score = 97.6 bits (49), Expect = 4e-018
Identities = 82/93 (88%)
Strand = Plus / Plus
Query: 228 atgcagttccaaatgtgctctgtattttttactttctcacttggaacaagaacccactac 287
|||||||||||| | ||||||||||||||||||||||| || || ||||| ||||||||
Sbjct: 24467 atgcagttccaactttgctctgtattttttactttctccctgggtacaaggacccactat 24526
Query: 288 tttggccgtgcaatattacatggaggtgcaaag 320
|||||||| ||||| ||||||| |||||||||
Sbjct: 24527 tttggccgcacaatactacatggtggtgcaaag 24559
Score = 58.0 bits (29), Expect = 3e-006
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 319 agtatagagcaaccggtagaggttttgtggtac 351
||||||||||||||||||| |||||||||||||
Sbjct: 24643 agtatagagcaaccggtaggggttttgtggtac 24675
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 17 gtacatatttctctatgggaaaatgtatctgg 48
||||||||||||||||||||||| |||||||
Sbjct: 23267 gtacatatttctctatgggaaaacctatctgg 23298
>ref|NT_107183.1| Oryza sativa (japonica cultivar-group)
Length = 1680144
Score = 172 bits (87), Expect = 8e-041
Identities = 126/139 (90%)
Strand = Plus / Plus
Query: 54 tctggtgttggagaatcaattcaaaatagagcggatatactgcagaacgcagccttgaat 113
||||| ||||||||||||||||| ||||| | ||||||| |||||||| |||||||||||
Sbjct: 1051652 tctggagttggagaatcaattcagaatagggtggatatattgcagaacacagccttgaat 1051711
Query: 114 gctgctctgaacactcaatttcttttccagattggtgtatttactgctgttcccatgatt 173
|| ||||||||||| || |||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 1051712 gcagctctgaacacacagtttcttttccagattggtgtatttactgctattcctatgatt 1051771
Query: 174 cttggtttcatccttgaat 192
|| ||||||||||| ||||
Sbjct: 1051772 ctgggtttcatcctggaat 1051790
Score = 97.6 bits (49), Expect = 4e-018
Identities = 82/93 (88%)
Strand = Plus / Plus
Query: 228 atgcagttccaaatgtgctctgtattttttactttctcacttggaacaagaacccactac 287
|||||||||||| | ||||||||||||||||||||||| || || ||||| ||||||||
Sbjct: 1052223 atgcagttccaactttgctctgtattttttactttctccctgggtacaaggacccactat 1052282
Query: 288 tttggccgtgcaatattacatggaggtgcaaag 320
|||||||| ||||| ||||||| |||||||||
Sbjct: 1052283 tttggccgcacaatactacatggtggtgcaaag 1052315
Score = 58.0 bits (29), Expect = 3e-006
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 319 agtatagagcaaccggtagaggttttgtggtac 351
||||||||||||||||||| |||||||||||||
Sbjct: 1052399 agtatagagcaaccggtaggggttttgtggtac 1052431
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 17 gtacatatttctctatgggaaaatgtatctgg 48
||||||||||||||||||||||| |||||||
Sbjct: 1051023 gtacatatttctctatgggaaaacctatctgg 1051054
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
scaffold, whole genome shotgun sequence
Length = 13858245
Score = 172 bits (87), Expect = 8e-041
Identities = 126/139 (90%)
Strand = Plus / Plus
Query: 54 tctggtgttggagaatcaattcaaaatagagcggatatactgcagaacgcagccttgaat 113
||||| ||||||||||||||||| ||||| | ||||||| |||||||| |||||||||||
Sbjct: 1049831 tctggagttggagaatcaattcagaatagggtggatatattgcagaacacagccttgaat 1049890
Query: 114 gctgctctgaacactcaatttcttttccagattggtgtatttactgctgttcccatgatt 173
|| ||||||||||| || |||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 1049891 gcagctctgaacacacagtttcttttccagattggtgtatttactgctattcctatgatt 1049950
Query: 174 cttggtttcatccttgaat 192
|| ||||||||||| ||||
Sbjct: 1049951 ctgggtttcatcctggaat 1049969
Score = 97.6 bits (49), Expect = 4e-018
Identities = 82/93 (88%)
Strand = Plus / Plus
Query: 228 atgcagttccaaatgtgctctgtattttttactttctcacttggaacaagaacccactac 287
|||||||||||| | ||||||||||||||||||||||| || || ||||| ||||||||
Sbjct: 1050402 atgcagttccaactttgctctgtattttttactttctccctgggtacaaggacccactat 1050461
Query: 288 tttggccgtgcaatattacatggaggtgcaaag 320
|||||||| ||||| ||||||| |||||||||
Sbjct: 1050462 tttggccgcacaatactacatggtggtgcaaag 1050494
Score = 58.0 bits (29), Expect = 3e-006
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 319 agtatagagcaaccggtagaggttttgtggtac 351
||||||||||||||||||| |||||||||||||
Sbjct: 1050578 agtatagagcaaccggtaggggttttgtggtac 1050610
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 17 gtacatatttctctatgggaaaatgtatctgg 48
||||||||||||||||||||||| |||||||
Sbjct: 1049202 gtacatatttctctatgggaaaacctatctgg 1049233
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 172 bits (87), Expect = 8e-041
Identities = 126/139 (90%)
Strand = Plus / Plus
Query: 54 tctggtgttggagaatcaattcaaaatagagcggatatactgcagaacgcagccttgaat 113
||||| ||||||||||||||||| ||||| | ||||||| |||||||| |||||||||||
Sbjct: 1242193 tctggagttggagaatcaattcagaatagggtggatatattgcagaacacagccttgaat 1242252
Query: 114 gctgctctgaacactcaatttcttttccagattggtgtatttactgctgttcccatgatt 173
|| ||||||||||| || |||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 1242253 gcagctctgaacacacagtttcttttccagattggtgtatttactgctattcctatgatt 1242312
Query: 174 cttggtttcatccttgaat 192
|| ||||||||||| ||||
Sbjct: 1242313 ctgggtttcatcctggaat 1242331
Score = 97.6 bits (49), Expect = 4e-018
Identities = 82/93 (88%)
Strand = Plus / Plus
Query: 228 atgcagttccaaatgtgctctgtattttttactttctcacttggaacaagaacccactac 287
|||||||||||| | ||||||||||||||||||||||| || || ||||| ||||||||
Sbjct: 1242764 atgcagttccaactttgctctgtattttttactttctccctgggtacaaggacccactat 1242823
Query: 288 tttggccgtgcaatattacatggaggtgcaaag 320
|||||||| ||||| ||||||| |||||||||
Sbjct: 1242824 tttggccgcacaatactacatggtggtgcaaag 1242856
Score = 58.0 bits (29), Expect = 3e-006
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 319 agtatagagcaaccggtagaggttttgtggtac 351
||||||||||||||||||| |||||||||||||
Sbjct: 1242940 agtatagagcaaccggtaggggttttgtggtac 1242972
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 17 gtacatatttctctatgggaaaatgtatctgg 48
||||||||||||||||||||||| |||||||
Sbjct: 1241564 gtacatatttctctatgggaaaacctatctgg 1241595
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 172 bits (87), Expect = 8e-041
Identities = 126/139 (90%)
Strand = Plus / Plus
Query: 54 tctggtgttggagaatcaattcaaaatagagcggatatactgcagaacgcagccttgaat 113
||||| ||||||||||||||||| ||||| | ||||||| |||||||| |||||||||||
Sbjct: 1051652 tctggagttggagaatcaattcagaatagggtggatatattgcagaacacagccttgaat 1051711
Query: 114 gctgctctgaacactcaatttcttttccagattggtgtatttactgctgttcccatgatt 173
|| ||||||||||| || |||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 1051712 gcagctctgaacacacagtttcttttccagattggtgtatttactgctattcctatgatt 1051771
Query: 174 cttggtttcatccttgaat 192
|| ||||||||||| ||||
Sbjct: 1051772 ctgggtttcatcctggaat 1051790
Score = 97.6 bits (49), Expect = 4e-018
Identities = 82/93 (88%)
Strand = Plus / Plus
Query: 228 atgcagttccaaatgtgctctgtattttttactttctcacttggaacaagaacccactac 287
|||||||||||| | ||||||||||||||||||||||| || || ||||| ||||||||
Sbjct: 1052223 atgcagttccaactttgctctgtattttttactttctccctgggtacaaggacccactat 1052282
Query: 288 tttggccgtgcaatattacatggaggtgcaaag 320
|||||||| ||||| ||||||| |||||||||
Sbjct: 1052283 tttggccgcacaatactacatggtggtgcaaag 1052315
Score = 58.0 bits (29), Expect = 3e-006
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 319 agtatagagcaaccggtagaggttttgtggtac 351
||||||||||||||||||| |||||||||||||
Sbjct: 1052399 agtatagagcaaccggtaggggttttgtggtac 1052431
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 17 gtacatatttctctatgggaaaatgtatctgg 48
||||||||||||||||||||||| |||||||
Sbjct: 1051023 gtacatatttctctatgggaaaacctatctgg 1051054
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 172 bits (87), Expect = 8e-041
Identities = 126/139 (90%)
Strand = Plus / Plus
Query: 54 tctggtgttggagaatcaattcaaaatagagcggatatactgcagaacgcagccttgaat 113
||||| ||||||||||||||||| ||||| | ||||||| |||||||| |||||||||||
Sbjct: 1051654 tctggagttggagaatcaattcagaatagggtggatatattgcagaacacagccttgaat 1051713
Query: 114 gctgctctgaacactcaatttcttttccagattggtgtatttactgctgttcccatgatt 173
|| ||||||||||| || |||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 1051714 gcagctctgaacacacagtttcttttccagattggtgtatttactgctattcctatgatt 1051773
Query: 174 cttggtttcatccttgaat 192
|| ||||||||||| ||||
Sbjct: 1051774 ctgggtttcatcctggaat 1051792
Score = 97.6 bits (49), Expect = 4e-018
Identities = 82/93 (88%)
Strand = Plus / Plus
Query: 228 atgcagttccaaatgtgctctgtattttttactttctcacttggaacaagaacccactac 287
|||||||||||| | ||||||||||||||||||||||| || || ||||| ||||||||
Sbjct: 1052225 atgcagttccaactttgctctgtattttttactttctccctgggtacaaggacccactat 1052284
Query: 288 tttggccgtgcaatattacatggaggtgcaaag 320
|||||||| ||||| ||||||| |||||||||
Sbjct: 1052285 tttggccgcacaatactacatggtggtgcaaag 1052317
Score = 58.0 bits (29), Expect = 3e-006
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 319 agtatagagcaaccggtagaggttttgtggtac 351
||||||||||||||||||| |||||||||||||
Sbjct: 1052401 agtatagagcaaccggtaggggttttgtggtac 1052433
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 17 gtacatatttctctatgggaaaatgtatctgg 48
||||||||||||||||||||||| |||||||
Sbjct: 1051025 gtacatatttctctatgggaaaacctatctgg 1051056
>dbj|AK059373.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-026-F03, full
insert sequence
Length = 1245
Score = 151 bits (76), Expect = 3e-034
Identities = 112/124 (90%)
Strand = Plus / Plus
Query: 228 atgcagttccaaatgtgctctgtattttttactttctcacttggaacaagaacccactac 287
|||||||||||| | ||||||||||||||||||||||| || || ||||| ||||||||
Sbjct: 31 atgcagttccaactttgctctgtattttttactttctccctgggtacaaggacccactat 90
Query: 288 tttggccgtgcaatattacatggaggtgcaaagtatagagcaaccggtagaggttttgtg 347
|||||||| ||||| ||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 91 tttggccgcacaatactacatggtggtgcaaagtatagagcaaccggtaggggttttgtg 150
Query: 348 gtac 351
||||
Sbjct: 151 gtac 154
>gb|AQ868648.1|AQ868648 nbeb0030I08r CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0030I08r, DNA sequence
Length = 382
Score = 97.6 bits (49), Expect = 4e-018
Identities = 82/93 (88%)
Strand = Plus / Plus
Query: 228 atgcagttccaaatgtgctctgtattttttactttctcacttggaacaagaacccactac 287
|||||||||||| | ||||||||||||||||||||||| || || ||||| ||||||||
Sbjct: 282 atgcagttccaactttgctctgtattttttactttctccctgggtacaaggacccactat 341
Query: 288 tttggccgtgcaatattacatggaggtgcaaag 320
|||||||| ||||| ||||||| |||||||||
Sbjct: 342 tttggccgcacaatactacatggtggtgcaaag 374
>gb|AQ859945.1|AQ859945 nbeb0013F14f CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0013F14f, DNA sequence
Length = 646
Score = 69.9 bits (35), Expect = 9e-010
Identities = 69/79 (87%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 243 tgctctgtattttttactttctcacttggaacaa-gaacccactactttggccgtgcaat 301
||||||||||||||||||||||| || || |||| |||||||||| |||||||| ||||
Sbjct: 267 tgctctgtattttttactttctccctgggtacaaggaacccactattttggccgcacaat 326
Query: 302 attacatggaggtgcaaag 320
| ||||||| || ||||||
Sbjct: 327 actacatggtggggcaaag 345
Score = 58.0 bits (29), Expect = 3e-006
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 319 agtatagagcaaccggtagaggttttgtggtac 351
||||||||||||||||||| |||||||||||||
Sbjct: 429 agtatagagcaaccggtaggggttttgtggtac 461
>gb|CB671521.1|CB671521 OSJNEe05C09.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe05C09 5', mRNA sequence
Length = 838
Score = 50.1 bits (25), Expect = 8e-004
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 17 gtacatatttctctatgggaaaatgtatctggc 49
||||||||||||||||||||||| ||||||||
Sbjct: 799 gtacatatttctctatgggaaaacctatctggc 831
>dbj|BA000029.3| Oryza sativa (japonica cultivar-group) mitochondrial DNA, complete genome
Length = 490520
Score = 50.1 bits (25), Expect = 8e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 306 catggaggtgcaaagtatagagcaaccggtagaggttttgt 346
||||| |||||||| ||||||||||| || |||||||||||
Sbjct: 300184 catggtggtgcaaaatatagagcaactggcagaggttttgt 300144
>dbj|AP004563.1| Oryza sativa (japonica cultivar-group) chromosome 8 clone P0472H04,
*** SEQUENCING IN PROGRESS ***
Length = 138936
Score = 42.1 bits (21), Expect = 0.20
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 207 gcttttgttcagtttattaca 227
|||||||||||||||||||||
Sbjct: 391 gcttttgttcagtttattaca 371
>dbj|AP006049.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
clone:OSJNBa0016N23
Length = 147336
Score = 42.1 bits (21), Expect = 0.20
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 207 gcttttgttcagtttattaca 227
|||||||||||||||||||||
Sbjct: 93608 gcttttgttcagtttattaca 93588
>dbj|AP005649.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OSJNBa0064G16
Length = 166453
Score = 42.1 bits (21), Expect = 0.20
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 306 catggaggtgcaaagtatagagcaaccggtagaggttttgt 346
||||| |||||||| ||||||||||| || |||| ||||||
Sbjct: 8597 catggtggtgcaaaatatagagcaactggcagagattttgt 8557
>gb|AACV01003332.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg003332, whole
genome shotgun sequence
Length = 44353
Score = 42.1 bits (21), Expect = 0.20
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 306 catggaggtgcaaagtatagagcaaccggtagaggttttgt 346
||||| |||||||| ||||||||||| || |||| ||||||
Sbjct: 12736 catggtggtgcaaaatatagagcaactggcagagattttgt 12696
>gb|AACV01018837.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg018837, whole
genome shotgun sequence
Length = 70283
Score = 42.1 bits (21), Expect = 0.20
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 207 gcttttgttcagtttattaca 227
|||||||||||||||||||||
Sbjct: 37385 gcttttgttcagtttattaca 37365
>ref|NT_107175.1| Oryza sativa (japonica cultivar-group)
Length = 2882457
Score = 42.1 bits (21), Expect = 0.20
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 306 catggaggtgcaaagtatagagcaaccggtagaggttttgt 346
||||| |||||||| ||||||||||| || |||| ||||||
Sbjct: 2392676 catggtggtgcaaaatatagagcaactggcagagattttgt 2392636
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 42.1 bits (21), Expect = 0.20
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 207 gcttttgttcagtttattaca 227
|||||||||||||||||||||
Sbjct: 25080336 gcttttgttcagtttattaca 25080316
>gb|CH401230.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000067 genomic
scaffold, whole genome shotgun sequence
Length = 19501165
Score = 42.1 bits (21), Expect = 0.20
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 207 gcttttgttcagtttattaca 227
|||||||||||||||||||||
Sbjct: 16568124 gcttttgttcagtttattaca 16568104
>gb|CH401169.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000006 genomic
scaffold, whole genome shotgun sequence
Length = 13452964
Score = 42.1 bits (21), Expect = 0.20
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 306 catggaggtgcaaagtatagagcaaccggtagaggttttgt 346
||||| |||||||| ||||||||||| || |||| ||||||
Sbjct: 2437405 catggtggtgcaaaatatagagcaactggcagagattttgt 2437365
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 42.1 bits (21), Expect = 0.20
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 207 gcttttgttcagtttattaca 227
|||||||||||||||||||||
Sbjct: 24170130 gcttttgttcagtttattaca 24170110
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 42.1 bits (21), Expect = 0.20
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 306 catggaggtgcaaagtatagagcaaccggtagaggttttgt 346
||||| |||||||| ||||||||||| || |||| ||||||
Sbjct: 2437405 catggtggtgcaaaatatagagcaactggcagagattttgt 2437365
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 42.1 bits (21), Expect = 0.20
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 306 catggaggtgcaaagtatagagcaaccggtagaggttttgt 346
||||| |||||||| ||||||||||| || |||| ||||||
Sbjct: 2392676 catggtggtgcaaaatatagagcaactggcagagattttgt 2392636
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 42.1 bits (21), Expect = 0.20
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 207 gcttttgttcagtttattaca 227
|||||||||||||||||||||
Sbjct: 25318423 gcttttgttcagtttattaca 25318403
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 602,666
Number of Sequences: 438736
Number of extensions: 602666
Number of successful extensions: 14022
Number of sequences better than 0.5: 29
Number of HSP's better than 0.5 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13711
Number of HSP's gapped (non-prelim): 308
length of query: 370
length of database: 2,800,419,916
effective HSP length: 20
effective length of query: 350
effective length of database: 2,791,645,196
effective search space: 977075818600
effective search space used: 977075818600
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)