BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAF11h01.xg.2.1
(328 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AQ872381.1|AQ872381 nbeb0048C10r CUGI Rice BAC Library (... 113 6e-023
dbj|AP003513.2| Oryza sativa (japonica cultivar-group) geno... 113 6e-023
dbj|AP003569.3| Oryza sativa (japonica cultivar-group) geno... 113 6e-023
gb|AACV01013347.1| Oryza sativa (japonica cultivar-group) c... 113 6e-023
ref|NT_079873.2| Oryza sativa (japonica cultivar-group) 113 6e-023
gb|CH401209.1| Oryza sativa (japonica cultivar-group) chrom... 113 6e-023
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 113 6e-023
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 113 6e-023
>gb|AQ872381.1|AQ872381 nbeb0048C10r CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0048C10r, DNA sequence
Length = 781
Score = 113 bits (57), Expect = 6e-023
Identities = 117/137 (85%)
Strand = Plus / Minus
Query: 23 cctcagggctgatgcttggattatagccaagacccattacatgccatgacttatccagtg 82
||||||| ||||||||||||||||| ||||| ||||||||||||||||| || || || |
Sbjct: 495 cctcaggactgatgcttggattatacccaaggcccattacatgccatgatttgtcaagcg 436
Query: 83 gcttggtattgccgtaaaaggacatcagcccagctgttagaatggatgtaggatcccaca 142
|||| |||||||| || || | |||||||||||| | ||||| ||||| |||||||| |
Sbjct: 435 gctttgtattgccatagaatgtcatcagcccagcaggtagaacagatgtgggatcccaaa 376
Query: 143 gctcgccatcctcattc 159
|| | ||||||||||||
Sbjct: 375 gcacaccatcctcattc 359
>dbj|AP003513.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0690H04
Length = 137319
Score = 113 bits (57), Expect = 6e-023
Identities = 117/137 (85%)
Strand = Plus / Plus
Query: 23 cctcagggctgatgcttggattatagccaagacccattacatgccatgacttatccagtg 82
||||||| ||||||||||||||||| ||||| ||||||||||||||||| || || || |
Sbjct: 133186 cctcaggactgatgcttggattatacccaaggcccattacatgccatgatttgtcaagcg 133245
Query: 83 gcttggtattgccgtaaaaggacatcagcccagctgttagaatggatgtaggatcccaca 142
|||| |||||||| || || | |||||||||||| | ||||| ||||| |||||||| |
Sbjct: 133246 gctttgtattgccatagaatgtcatcagcccagcaggtagaacagatgtgggatcccaaa 133305
Query: 143 gctcgccatcctcattc 159
|| | ||||||||||||
Sbjct: 133306 gcacaccatcctcattc 133322
Score = 95.6 bits (48), Expect = 1e-017
Identities = 120/144 (83%)
Strand = Plus / Plus
Query: 159 catttccatatactgatggaacaattctgtgcaaccatcccgccgccatgtctcaaggtc 218
||||||||| ||||||||||||| || ||||| ||||||| ||||||| |||||| ||
Sbjct: 134382 catttccatgtactgatggaacagctccgtgcagccatcccttcgccatgcctcaagatc 134441
Query: 219 gaacacatttaccccatatgcccatgcacaggcattgggattgaatcgatcccgcacaat 278
||||||| |||||||||||||| ||||| || |||| ||| || ||| |||| ||
Sbjct: 134442 atacacattgaccccatatgcccaagcacatgcgccaggatcgaaccgctcctgcacgat 134501
Query: 279 gggctgcgtgaagttgagatactt 302
|| |||||||||||||||||||||
Sbjct: 134502 ggcctgcgtgaagttgagatactt 134525
>dbj|AP003569.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0425F05
Length = 162858
Score = 113 bits (57), Expect = 6e-023
Identities = 117/137 (85%)
Strand = Plus / Plus
Query: 23 cctcagggctgatgcttggattatagccaagacccattacatgccatgacttatccagtg 82
||||||| ||||||||||||||||| ||||| ||||||||||||||||| || || || |
Sbjct: 50936 cctcaggactgatgcttggattatacccaaggcccattacatgccatgatttgtcaagcg 50995
Query: 83 gcttggtattgccgtaaaaggacatcagcccagctgttagaatggatgtaggatcccaca 142
|||| |||||||| || || | |||||||||||| | ||||| ||||| |||||||| |
Sbjct: 50996 gctttgtattgccatagaatgtcatcagcccagcaggtagaacagatgtgggatcccaaa 51055
Query: 143 gctcgccatcctcattc 159
|| | ||||||||||||
Sbjct: 51056 gcacaccatcctcattc 51072
Score = 95.6 bits (48), Expect = 1e-017
Identities = 120/144 (83%)
Strand = Plus / Plus
Query: 159 catttccatatactgatggaacaattctgtgcaaccatcccgccgccatgtctcaaggtc 218
||||||||| ||||||||||||| || ||||| ||||||| ||||||| |||||| ||
Sbjct: 52132 catttccatgtactgatggaacagctccgtgcagccatcccttcgccatgcctcaagatc 52191
Query: 219 gaacacatttaccccatatgcccatgcacaggcattgggattgaatcgatcccgcacaat 278
||||||| |||||||||||||| ||||| || |||| ||| || ||| |||| ||
Sbjct: 52192 atacacattgaccccatatgcccaagcacatgcgccaggatcgaaccgctcctgcacgat 52251
Query: 279 gggctgcgtgaagttgagatactt 302
|| |||||||||||||||||||||
Sbjct: 52252 ggcctgcgtgaagttgagatactt 52275
>gb|AACV01013347.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg013347, whole
genome shotgun sequence
Length = 24369
Score = 113 bits (57), Expect = 6e-023
Identities = 117/137 (85%)
Strand = Plus / Minus
Query: 23 cctcagggctgatgcttggattatagccaagacccattacatgccatgacttatccagtg 82
||||||| ||||||||||||||||| ||||| ||||||||||||||||| || || || |
Sbjct: 3693 cctcaggactgatgcttggattatacccaaggcccattacatgccatgatttgtcaagcg 3634
Query: 83 gcttggtattgccgtaaaaggacatcagcccagctgttagaatggatgtaggatcccaca 142
|||| |||||||| || || | |||||||||||| | ||||| ||||| |||||||| |
Sbjct: 3633 gctttgtattgccatagaatgtcatcagcccagcaggtagaacagatgtgggatcccaaa 3574
Query: 143 gctcgccatcctcattc 159
|| | ||||||||||||
Sbjct: 3573 gcacaccatcctcattc 3557
Score = 95.6 bits (48), Expect = 1e-017
Identities = 120/144 (83%)
Strand = Plus / Minus
Query: 159 catttccatatactgatggaacaattctgtgcaaccatcccgccgccatgtctcaaggtc 218
||||||||| ||||||||||||| || ||||| ||||||| ||||||| |||||| ||
Sbjct: 2497 catttccatgtactgatggaacagctccgtgcagccatcccttcgccatgcctcaagatc 2438
Query: 219 gaacacatttaccccatatgcccatgcacaggcattgggattgaatcgatcccgcacaat 278
||||||| |||||||||||||| ||||| || |||| ||| || ||| |||| ||
Sbjct: 2437 atacacattgaccccatatgcccaagcacatgcgccaggatcgaaccgctcctgcacgat 2378
Query: 279 gggctgcgtgaagttgagatactt 302
|| |||||||||||||||||||||
Sbjct: 2377 ggcctgcgtgaagttgagatactt 2354
>ref|NT_079873.2| Oryza sativa (japonica cultivar-group)
Length = 5116111
Score = 113 bits (57), Expect = 6e-023
Identities = 117/137 (85%)
Strand = Plus / Plus
Query: 23 cctcagggctgatgcttggattatagccaagacccattacatgccatgacttatccagtg 82
||||||| ||||||||||||||||| ||||| ||||||||||||||||| || || || |
Sbjct: 2308390 cctcaggactgatgcttggattatacccaaggcccattacatgccatgatttgtcaagcg 2308449
Query: 83 gcttggtattgccgtaaaaggacatcagcccagctgttagaatggatgtaggatcccaca 142
|||| |||||||| || || | |||||||||||| | ||||| ||||| |||||||| |
Sbjct: 2308450 gctttgtattgccatagaatgtcatcagcccagcaggtagaacagatgtgggatcccaaa 2308509
Query: 143 gctcgccatcctcattc 159
|| | ||||||||||||
Sbjct: 2308510 gcacaccatcctcattc 2308526
Score = 95.6 bits (48), Expect = 1e-017
Identities = 120/144 (83%)
Strand = Plus / Plus
Query: 159 catttccatatactgatggaacaattctgtgcaaccatcccgccgccatgtctcaaggtc 218
||||||||| ||||||||||||| || ||||| ||||||| ||||||| |||||| ||
Sbjct: 2309586 catttccatgtactgatggaacagctccgtgcagccatcccttcgccatgcctcaagatc 2309645
Query: 219 gaacacatttaccccatatgcccatgcacaggcattgggattgaatcgatcccgcacaat 278
||||||| |||||||||||||| ||||| || |||| ||| || ||| |||| ||
Sbjct: 2309646 atacacattgaccccatatgcccaagcacatgcgccaggatcgaaccgctcctgcacgat 2309705
Query: 279 gggctgcgtgaagttgagatactt 302
|| |||||||||||||||||||||
Sbjct: 2309706 ggcctgcgtgaagttgagatactt 2309729
>gb|CH401209.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000046 genomic
scaffold, whole genome shotgun sequence
Length = 8607552
Score = 113 bits (57), Expect = 6e-023
Identities = 117/137 (85%)
Strand = Plus / Plus
Query: 23 cctcagggctgatgcttggattatagccaagacccattacatgccatgacttatccagtg 82
||||||| ||||||||||||||||| ||||| ||||||||||||||||| || || || |
Sbjct: 6546762 cctcaggactgatgcttggattatacccaaggcccattacatgccatgatttgtcaagcg 6546821
Query: 83 gcttggtattgccgtaaaaggacatcagcccagctgttagaatggatgtaggatcccaca 142
|||| |||||||| || || | |||||||||||| | ||||| ||||| |||||||| |
Sbjct: 6546822 gctttgtattgccatagaatgtcatcagcccagcaggtagaacagatgtgggatcccaaa 6546881
Query: 143 gctcgccatcctcattc 159
|| | ||||||||||||
Sbjct: 6546882 gcacaccatcctcattc 6546898
Score = 95.6 bits (48), Expect = 1e-017
Identities = 120/144 (83%)
Strand = Plus / Plus
Query: 159 catttccatatactgatggaacaattctgtgcaaccatcccgccgccatgtctcaaggtc 218
||||||||| ||||||||||||| || ||||| ||||||| ||||||| |||||| ||
Sbjct: 6547958 catttccatgtactgatggaacagctccgtgcagccatcccttcgccatgcctcaagatc 6548017
Query: 219 gaacacatttaccccatatgcccatgcacaggcattgggattgaatcgatcccgcacaat 278
||||||| |||||||||||||| ||||| || |||| ||| || ||| |||| ||
Sbjct: 6548018 atacacattgaccccatatgcccaagcacatgcgccaggatcgaaccgctcctgcacgat 6548077
Query: 279 gggctgcgtgaagttgagatactt 302
|| |||||||||||||||||||||
Sbjct: 6548078 ggcctgcgtgaagttgagatactt 6548101
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 113 bits (57), Expect = 6e-023
Identities = 117/137 (85%)
Strand = Plus / Plus
Query: 23 cctcagggctgatgcttggattatagccaagacccattacatgccatgacttatccagtg 82
||||||| ||||||||||||||||| ||||| ||||||||||||||||| || || || |
Sbjct: 6546762 cctcaggactgatgcttggattatacccaaggcccattacatgccatgatttgtcaagcg 6546821
Query: 83 gcttggtattgccgtaaaaggacatcagcccagctgttagaatggatgtaggatcccaca 142
|||| |||||||| || || | |||||||||||| | ||||| ||||| |||||||| |
Sbjct: 6546822 gctttgtattgccatagaatgtcatcagcccagcaggtagaacagatgtgggatcccaaa 6546881
Query: 143 gctcgccatcctcattc 159
|| | ||||||||||||
Sbjct: 6546882 gcacaccatcctcattc 6546898
Score = 95.6 bits (48), Expect = 1e-017
Identities = 120/144 (83%)
Strand = Plus / Plus
Query: 159 catttccatatactgatggaacaattctgtgcaaccatcccgccgccatgtctcaaggtc 218
||||||||| ||||||||||||| || ||||| ||||||| ||||||| |||||| ||
Sbjct: 6547958 catttccatgtactgatggaacagctccgtgcagccatcccttcgccatgcctcaagatc 6548017
Query: 219 gaacacatttaccccatatgcccatgcacaggcattgggattgaatcgatcccgcacaat 278
||||||| |||||||||||||| ||||| || |||| ||| || ||| |||| ||
Sbjct: 6548018 atacacattgaccccatatgcccaagcacatgcgccaggatcgaaccgctcctgcacgat 6548077
Query: 279 gggctgcgtgaagttgagatactt 302
|| |||||||||||||||||||||
Sbjct: 6548078 ggcctgcgtgaagttgagatactt 6548101
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 113 bits (57), Expect = 6e-023
Identities = 117/137 (85%)
Strand = Plus / Plus
Query: 23 cctcagggctgatgcttggattatagccaagacccattacatgccatgacttatccagtg 82
||||||| ||||||||||||||||| ||||| ||||||||||||||||| || || || |
Sbjct: 6616810 cctcaggactgatgcttggattatacccaaggcccattacatgccatgatttgtcaagcg 6616869
Query: 83 gcttggtattgccgtaaaaggacatcagcccagctgttagaatggatgtaggatcccaca 142
|||| |||||||| || || | |||||||||||| | ||||| ||||| |||||||| |
Sbjct: 6616870 gctttgtattgccatagaatgtcatcagcccagcaggtagaacagatgtgggatcccaaa 6616929
Query: 143 gctcgccatcctcattc 159
|| | ||||||||||||
Sbjct: 6616930 gcacaccatcctcattc 6616946
Score = 95.6 bits (48), Expect = 1e-017
Identities = 120/144 (83%)
Strand = Plus / Plus
Query: 159 catttccatatactgatggaacaattctgtgcaaccatcccgccgccatgtctcaaggtc 218
||||||||| ||||||||||||| || ||||| ||||||| ||||||| |||||| ||
Sbjct: 6618006 catttccatgtactgatggaacagctccgtgcagccatcccttcgccatgcctcaagatc 6618065
Query: 219 gaacacatttaccccatatgcccatgcacaggcattgggattgaatcgatcccgcacaat 278
||||||| |||||||||||||| ||||| || |||| ||| || ||| |||| ||
Sbjct: 6618066 atacacattgaccccatatgcccaagcacatgcgccaggatcgaaccgctcctgcacgat 6618125
Query: 279 gggctgcgtgaagttgagatactt 302
|| |||||||||||||||||||||
Sbjct: 6618126 ggcctgcgtgaagttgagatactt 6618149
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 367,633
Number of Sequences: 438736
Number of extensions: 367633
Number of successful extensions: 7020
Number of sequences better than 0.5: 8
Number of HSP's better than 0.5 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6946
Number of HSP's gapped (non-prelim): 67
length of query: 328
length of database: 2,800,419,916
effective HSP length: 20
effective length of query: 308
effective length of database: 2,791,645,196
effective search space: 859826720368
effective search space used: 859826720368
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)