BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAE40a10.yg.2.1
(709 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_550490.1| Oryza sativa (japonica cultivar-group), mRNA 698 0.0
dbj|AK071856.1| Oryza sativa (japonica cultivar-group) cDNA... 690 0.0
dbj|AK059569.1| Oryza sativa (japonica cultivar-group) cDNA... 565 e-158
gb|CB684140.1|CB684140 OSJNEf13F24.f OSJNEf Oryza sativa (j... 373 e-101
gb|AACV01012882.1| Oryza sativa (japonica cultivar-group) c... 174 4e-041
dbj|AP001552.1| Oryza sativa (japonica cultivar-group) gene... 174 4e-041
dbj|AP001389.1| Oryza sativa (japonica cultivar-group) geno... 174 4e-041
ref|NT_107230.2| Oryza sativa (japonica cultivar-group) 174 4e-041
gb|CH401209.1| Oryza sativa (japonica cultivar-group) chrom... 174 4e-041
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 174 4e-041
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 174 4e-041
gb|CB684141.1|CB684141 OSJNEf13F24.r OSJNEf Oryza sativa (j... 165 4e-038
dbj|AK099782.1| Oryza sativa (japonica cultivar-group) cDNA... 68 7e-009
dbj|AK099834.1| Oryza sativa (japonica cultivar-group) cDNA... 68 7e-009
dbj|AK120195.1| Oryza sativa (japonica cultivar-group) cDNA... 68 7e-009
dbj|AK120402.1| Oryza sativa (japonica cultivar-group) cDNA... 68 7e-009
gb|AACV01002367.1| Oryza sativa (japonica cultivar-group) c... 68 7e-009
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 68 7e-009
ref|NM_191270.1| Oryza sativa (japonica cultivar-group), p... 68 7e-009
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 68 7e-009
dbj|AP003249.3| Oryza sativa (japonica cultivar-group) geno... 68 7e-009
dbj|AP003268.4| Oryza sativa (japonica cultivar-group) geno... 68 7e-009
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 68 7e-009
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 68 7e-009
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 68 7e-009
dbj|AK060407.1| Oryza sativa (japonica cultivar-group) cDNA... 66 3e-008
gb|AACV01002091.1| Oryza sativa (japonica cultivar-group) c... 66 3e-008
ref|NM_191973.1| Oryza sativa (japonica cultivar-group), p... 66 3e-008
dbj|AP003223.3| Oryza sativa (japonica cultivar-group) geno... 66 3e-008
dbj|AP003264.3| Oryza sativa (japonica cultivar-group) geno... 66 3e-008
dbj|BA000029.3| Oryza sativa (japonica cultivar-group) mito... 66 3e-008
dbj|AG209903.1| Oryza sativa (japonica cultivar-group) DNA,... 50 0.002
dbj|AG212141.1| Oryza sativa (japonica cultivar-group) DNA,... 50 0.002
dbj|AG206827.1| Oryza sativa (japonica cultivar-group) DNA,... 50 0.002
dbj|AG206969.1| Oryza sativa (japonica cultivar-group) DNA,... 50 0.002
dbj|AB157743.1| Oryza sativa (japonica cultivar-group) DNA,... 50 0.002
gb|CB642889.1|CB642889 OSJNEb03E21.f OSJNEb Oryza sativa (j... 50 0.002
gb|CB662166.1|CB662166 OSJNEd05O23.f OSJNEd Oryza sativa (j... 50 0.002
gb|CB677902.1|CB677902 OSJNEe15F12.f OSJNEe Oryza sativa (j... 50 0.002
dbj|AK062279.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.002
gb|AC104427.2| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
gb|AC144426.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
dbj|AK105008.2| Oryza sativa (japonica cultivar-group) cDNA... 50 0.002
dbj|AP005649.3| Oryza sativa (japonica cultivar-group) geno... 50 0.002
gb|AACV01003332.1| Oryza sativa (japonica cultivar-group) c... 50 0.002
gb|AACV01005795.1| Oryza sativa (japonica cultivar-group) c... 50 0.002
ref|NM_187591.1| Oryza sativa (japonica cultivar-group), p... 50 0.002
ref|NT_107183.1| Oryza sativa (japonica cultivar-group) 50 0.002
ref|NT_107175.1| Oryza sativa (japonica cultivar-group) 50 0.002
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 50 0.002
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 50 0.002
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
gb|CB662404.1|CB662404 OSJNEd06G07.f OSJNEd Oryza sativa (j... 42 0.40
gb|CB662461.1|CB662461 OSJNEd06I07.f OSJNEd Oryza sativa (j... 42 0.40
gb|CB669058.1|CB669058 OSJNEe01E09.f OSJNEe Oryza sativa (j... 42 0.40
>ref|XM_550490.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 5316
Score = 698 bits (352), Expect = 0.0
Identities = 562/635 (88%)
Strand = Plus / Minus
Query: 21 acaatgccatactgaaacatgagaaatctaaggctgaggattgtctcaagaatacgtcct 80
||||||||||| || || || |||||||| ||||| ||||| ||||| || |||||||||
Sbjct: 4805 acaatgccatattggaaaataagaaatctgaggcttaggatagtctctaggatacgtcct 4746
Query: 81 ctgaatgtctggatatgcgcctgctcctcatcccaccaagattcccaactgttgtcaccc 140
|| ||||||||||| || || |||||||||||||||||||||||||| ||||| || |||
Sbjct: 4745 cttaatgtctggatgtgggcttgctcctcatcccaccaagattcccagctgttttccccc 4686
Query: 141 tttacaccaactccacctttataaagtaaccagtttgtccagtcatcaaagtcctcaaca 200
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 4685 tttacaccaactccacctttataaagtaaccaatttgtccagtcatcaaagtcctcaaca 4626
Query: 201 gtcttttgccactcgaaaccagaagggttgaaaatgtaaggcgcgaaaagccaggacata 260
|||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||
Sbjct: 4625 gtcttttgccactcgaaaccagaagggttgaaaatgtatggtgcgaagagccaggacacg 4566
Query: 261 acgaggaaccaactactgatagtaatcagaataaatgaagatgaaccgccttttgtgtat 320
||||||||||||||||||||||| | |||||||| |||||||||||||| |||| ||
Sbjct: 4565 acgaggaaccaactactgatagttaatagaataaaggaagatgaaccgccccttgtataa 4506
Query: 321 ccatatgcaatgtaaacgatcaggaggagagcaacctcaagcgctttgacaaagtgactt 380
|||||||||||||| | || |||||||||||||| ||||||||||| |||||||| |||
Sbjct: 4505 ccatatgcaatgtagataatgaggaggagagcaacttcaagcgctttcacaaagtggctt 4446
Query: 381 cgagaatagagcctataattttcagcaaactttatgtgccgaacaacaaaacctcttcca 440
||||||||||||| ||||||||| ||||| |||||||| ||||||||||||||||| |||
Sbjct: 4445 cgagaatagagccgataattttcggcaaattttatgtgacgaacaacaaaacctctacca 4386
Query: 441 gtagcacgatactttgcaccgccatgaaggattgttctaccaaagtaatgtgtccttgtt 500
|||||| ||||||||||||| |||||||| |||||||| ||||| |||||||| || |||
Sbjct: 4385 gtagcatgatactttgcaccaccatgaagtattgttctcccaaaataatgtgttctagtt 4326
Query: 501 ccaagcgaaaaggtgaaaaacaccgaacagaactggagctgcattgtaataaaactaaaa 560
||||| || || ||||||||||| || |||||||| || ||||||||||||||||| |||
Sbjct: 4325 ccaagagagaatgtgaaaaacactgagcagaactgcagttgcattgtaataaaactgaaa 4266
Query: 561 acagccttcatcagccccagctnnagaatgaaacccattatcatcgggactgnngtnaaa 620
| |||||||| |||||||| | | ||||||||||||||||||||| |||| || |||
Sbjct: 4265 atagccttcagtagccccagttccaaaatgaaacccattatcatcggtactgcagtaaaa 4206
Query: 621 ataccaatctnnnncaaaaattgagcattcaaagc 655
|||||||||| |||||||||||| ||||||||
Sbjct: 4205 ataccaatctggaccaaaaattgagcgttcaaagc 4171
>dbj|AK071856.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023122H24, full
insert sequence
Length = 1399
Score = 690 bits (348), Expect = 0.0
Identities = 561/635 (88%)
Strand = Plus / Minus
Query: 21 acaatgccatactgaaacatgagaaatctaaggctgaggattgtctcaagaatacgtcct 80
||||||||||| || || || |||||||| ||||| ||||| ||||| || |||||||||
Sbjct: 658 acaatgccatattggaaaataagaaatctgaggcttaggatagtctctaggatacgtcct 599
Query: 81 ctgaatgtctggatatgcgcctgctcctcatcccaccaagattcccaactgttgtcaccc 140
|| ||||||||||| || || |||||||||||||||||||||||||| ||||| || |||
Sbjct: 598 cttaatgtctggatgtgggcttgctcctcatcccaccaagattcccagctgttttccccc 539
Query: 141 tttacaccaactccacctttataaagtaaccagtttgtccagtcatcaaagtcctcaaca 200
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 538 tttacaccaactccacctttataaagtaaccaatttgtccagtcatcaaagtcctcaaca 479
Query: 201 gtcttttgccactcgaaaccagaagggttgaaaatgtaaggcgcgaaaagccaggacata 260
|||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||
Sbjct: 478 gtcttttgccactcgaaaccagaagggttgaaaatgtatggtgcgaagagccaggacacg 419
Query: 261 acgaggaaccaactactgatagtaatcagaataaatgaagatgaaccgccttttgtgtat 320
||||||||||||||||||||||| | |||||||| |||||||||||||| |||| ||
Sbjct: 418 acgaggaaccaactactgatagttaatagaataaaggaagatgaaccgccccttgtataa 359
Query: 321 ccatatgcaatgtaaacgatcaggaggagagcaacctcaagcgctttgacaaagtgactt 380
|||||||||||||| | || |||||||||||||| ||||||||||| |||||||| ||
Sbjct: 358 ccatatgcaatgtagataatgaggaggagagcaacttcaagcgctttcacaaagtgggtt 299
Query: 381 cgagaatagagcctataattttcagcaaactttatgtgccgaacaacaaaacctcttcca 440
||||||||||||| ||||||||| ||||| |||||||| ||||||||||||||||| |||
Sbjct: 298 cgagaatagagccgataattttcggcaaattttatgtgacgaacaacaaaacctctacca 239
Query: 441 gtagcacgatactttgcaccgccatgaaggattgttctaccaaagtaatgtgtccttgtt 500
|||||| ||||||||||||| |||||||| |||||||| ||||| |||||||| || |||
Sbjct: 238 gtagcatgatactttgcaccaccatgaagtattgttctcccaaaataatgtgttctagtt 179
Query: 501 ccaagcgaaaaggtgaaaaacaccgaacagaactggagctgcattgtaataaaactaaaa 560
||||| || || ||||||||||| || |||||||| || ||||||||||||||||| |||
Sbjct: 178 ccaagagagaatgtgaaaaacactgagcagaactgcagttgcattgtaataaaactgaaa 119
Query: 561 acagccttcatcagccccagctnnagaatgaaacccattatcatcgggactgnngtnaaa 620
| |||||||| |||||||| | | ||||||||||||||||||||| |||| || |||
Sbjct: 118 atagccttcagtagccccagttccaaaatgaaacccattatcatcggtactgcagtaaaa 59
Query: 621 ataccaatctnnnncaaaaattgagcattcaaagc 655
|||||||||| |||||||||||| ||||||||
Sbjct: 58 ataccaatctggaccaaaaattgagcgttcaaagc 24
>dbj|AK059569.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-H12, full
insert sequence
Length = 1235
Score = 565 bits (285), Expect = e-158
Identities = 426/473 (90%)
Strand = Plus / Minus
Query: 21 acaatgccatactgaaacatgagaaatctaaggctgaggattgtctcaagaatacgtcct 80
||||||||||| || || || |||||||| ||||| ||||| ||||| || |||||||||
Sbjct: 473 acaatgccatattggaaaataagaaatctgaggcttaggatagtctctaggatacgtcct 414
Query: 81 ctgaatgtctggatatgcgcctgctcctcatcccaccaagattcccaactgttgtcaccc 140
|| ||||||||||| || || |||||||||||||||||||||||||| ||||| || |||
Sbjct: 413 cttaatgtctggatgtgggcttgctcctcatcccaccaagattcccagctgttttccccc 354
Query: 141 tttacaccaactccacctttataaagtaaccagtttgtccagtcatcaaagtcctcaaca 200
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 353 tttacaccaactccacctttataaagtaaccaatttgtccagtcatcaaagtcctcaaca 294
Query: 201 gtcttttgccactcgaaaccagaagggttgaaaatgtaaggcgcgaaaagccaggacata 260
|||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||
Sbjct: 293 gtcttttgccactcgaaaccagaagggttgaaaatgtatggtgcgaagagccaggacacg 234
Query: 261 acgaggaaccaactactgatagtaatcagaataaatgaagatgaaccgccttttgtgtat 320
||||||||||||||||||||||| | |||||||| |||||||||||||| |||| ||
Sbjct: 233 acgaggaaccaactactgatagttaatagaataaaggaagatgaaccgccccttgtataa 174
Query: 321 ccatatgcaatgtaaacgatcaggaggagagcaacctcaagcgctttgacaaagtgactt 380
|||||||||||||| | || |||||||||||||| ||||||||||| |||||||| |||
Sbjct: 173 ccatatgcaatgtagataatgaggaggagagcaacttcaagcgctttcacaaagtggctt 114
Query: 381 cgagaatagagcctataattttcagcaaactttatgtgccgaacaacaaaacctcttcca 440
||||||||||||| ||||||||| ||||| |||||||| ||||||||||||||||| |||
Sbjct: 113 cgagaatagagccgataattttcggcaaattttatgtgacgaacaacaaaacctctacca 54
Query: 441 gtagcacgatactttgcaccgccatgaaggattgttctaccaaagtaatgtgt 493
|||||| ||||||||||||| |||||||| |||||||| ||||| ||||||||
Sbjct: 53 gtagcatgatactttgcaccaccatgaagtattgttctcccaaaataatgtgt 1
>gb|CB684140.1|CB684140 OSJNEf13F24.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf13F24 5', mRNA sequence
Length = 710
Score = 373 bits (188), Expect = e-101
Identities = 377/443 (85%)
Strand = Plus / Minus
Query: 213 tcgaaaccagaagggttgaaaatgtaaggcgcgaaaagccaggacataacgaggaaccaa 272
|||| ||||||||||||||||||||| || | ||| || ||||||| | ||||||||||
Sbjct: 710 tcgagaccagaagggttgaaaatgtatggtgtgaagagacaggacacgatgaggaaccaa 651
Query: 273 ctactgatagtaatcagaataaatgaagatgaaccgccttttgtgtatccatatgcaatg 332
|||||||||| | |||||||| |||||||| ||||| |||| || ||||||||||||
Sbjct: 650 atactgatagttaatagaataaaggaagatgacccgccccttgtataaccatatgcaatg 591
Query: 333 taaacgatcaggaggagagcaacctcaagcgctttgacaaagtgacttcgagaatagagc 392
|| | || |||||||||||||| ||||||||||| |||||||| |||||||||||||||
Sbjct: 590 tagataatgaggaggagagcaacttcaagcgctttcacaaagtggcttcgagaatagagc 531
Query: 393 ctataattttcagcaaactttatgtgccgaacaacaaaacctcttccagtagcacgatac 452
| ||||||||| ||||| |||||||| ||||||||||||||| | ||||||||| |||||
Sbjct: 530 cgataattttcggcaaattttatgtgacgaacaacaaaacctgtaccagtagcatgatac 471
Query: 453 tttgcaccgccatgaaggattgttctaccaaagtaatgtgtccttgttccaagcgaaaag 512
|||||||| |||||||| |||||||| ||||| |||||||| | |||||||| || ||
Sbjct: 470 tttgcaccaccatgaagtattgttctcccaaaataatgtgttatagttccaagagagaat 411
Query: 513 gtgaaaaacaccgaacagaactggagctgcattgtaataaaactaaaaacagccttcatc 572
||||||||||| || ||||| || || |||||||||||||| || |||| ||||||||
Sbjct: 410 gtgaaaaacactgagcagaaatgcagttgcattgtaataaatctgaaaatagccttcagt 351
Query: 573 agccccagctnnagaatgaaacccattatcatcgggactgnngtnaaaataccaatctnn 632
|||||||| | | ||||||||||||||||||||| |||| || |||||||||||||
Sbjct: 350 agccccagttccaaaatgaaacccattatcatcggtactgcagtaaaaataccaatctgg 291
Query: 633 nncaaaaattgagcattcaaagc 655
|||||||||||| ||||||||
Sbjct: 290 accaaaaattgagcgttcaaagc 268
>gb|AACV01012882.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg012882, whole
genome shotgun sequence
Length = 24683
Score = 174 bits (88), Expect = 4e-041
Identities = 142/160 (88%)
Strand = Plus / Minus
Query: 203 cttttgccactcgaaaccagaagggttgaaaatgtaaggcgcgaaaagccaggacataac 262
|||||||||||||||||||||||||||||||||||| || ||||| |||||||||| ||
Sbjct: 13820 cttttgccactcgaaaccagaagggttgaaaatgtatggtgcgaagagccaggacacgac 13761
Query: 263 gaggaaccaactactgatagtaatcagaataaatgaagatgaaccgccttttgtgtatcc 322
||||||||||||||||||||| | |||||||| |||||||||||||| |||| || ||
Sbjct: 13760 gaggaaccaactactgatagttaatagaataaaggaagatgaaccgccccttgtataacc 13701
Query: 323 atatgcaatgtaaacgatcaggaggagagcaacctcaagc 362
|||||||||||| | || |||||||||||||| ||||||
Sbjct: 13700 atatgcaatgtagataatgaggaggagagcaacttcaagc 13661
Score = 170 bits (86), Expect = 7e-040
Identities = 98/102 (96%)
Strand = Plus / Minus
Query: 102 tgctcctcatcccaccaagattcccaactgttgtcaccctttacaccaactccaccttta 161
|||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||
Sbjct: 14186 tgctcctcatcccaccaagattcccagctgttttccccctttacaccaactccaccttta 14127
Query: 162 taaagtaaccagtttgtccagtcatcaaagtcctcaacagtc 203
||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 14126 taaagtaaccaatttgtccagtcatcaaagtcctcaacagtc 14085
Score = 119 bits (60), Expect = 2e-024
Identities = 84/92 (91%)
Strand = Plus / Minus
Query: 362 cgctttgacaaagtgacttcgagaatagagcctataattttcagcaaactttatgtgccg 421
|||||| |||||||| |||||||||||||||| ||||||||| ||||| |||||||| ||
Sbjct: 13198 cgctttcacaaagtggcttcgagaatagagccgataattttcggcaaattttatgtgacg 13139
Query: 422 aacaacaaaacctcttccagtagcacgatact 453
||||||||||||||| ||||||||| ||||||
Sbjct: 13138 aacaacaaaacctctaccagtagcatgatact 13107
Score = 111 bits (56), Expect = 5e-022
Identities = 101/116 (87%)
Strand = Plus / Minus
Query: 452 ctttgcaccgccatgaaggattgttctaccaaagtaatgtgtccttgttccaagcgaaaa 511
||||||||| |||||||| |||||||| ||||| |||||||| || |||||||| || ||
Sbjct: 13034 ctttgcaccaccatgaagtattgttctcccaaaataatgtgttctagttccaagagagaa 12975
Query: 512 ggtgaaaaacaccgaacagaactggagctgcattgtaataaaactaaaaacagcct 567
||||||||||| || |||||||| || ||||||||||||||||| |||| |||||
Sbjct: 12974 tgtgaaaaacactgagcagaactgcagttgcattgtaataaaactgaaaatagcct 12919
Score = 79.8 bits (40), Expect = 2e-012
Identities = 60/69 (86%)
Strand = Plus / Minus
Query: 587 aatgaaacccattatcatcgggactgnngtnaaaataccaatctnnnncaaaaattgagc 646
||||||||||||||||||||| |||| || ||||||||||||| ||||||||||||
Sbjct: 12785 aatgaaacccattatcatcggtactgcagtaaaaataccaatctggaccaaaaattgagc 12726
Query: 647 attcaaagc 655
||||||||
Sbjct: 12725 gttcaaagc 12717
Score = 69.9 bits (35), Expect = 2e-009
Identities = 71/83 (85%)
Strand = Plus / Minus
Query: 21 acaatgccatactgaaacatgagaaatctaaggctgaggattgtctcaagaatacgtcct 80
||||||||||| || || || |||||||| ||||| ||||| ||||| || |||||||||
Sbjct: 14365 acaatgccatattggaaaataagaaatctgaggcttaggatagtctctaggatacgtcct 14306
Query: 81 ctgaatgtctggatatgcgcctg 103
|| ||||||||||| || |||||
Sbjct: 14305 cttaatgtctggatgtgggcctg 14283
>dbj|AP001552.1| Oryza sativa (japonica cultivar-group) geneomic DNA, chromosome 6, PAC
clone:P0029D06
Length = 150120
Score = 174 bits (88), Expect = 4e-041
Identities = 142/160 (88%)
Strand = Plus / Plus
Query: 203 cttttgccactcgaaaccagaagggttgaaaatgtaaggcgcgaaaagccaggacataac 262
|||||||||||||||||||||||||||||||||||| || ||||| |||||||||| ||
Sbjct: 132533 cttttgccactcgaaaccagaagggttgaaaatgtatggtgcgaagagccaggacacgac 132592
Query: 263 gaggaaccaactactgatagtaatcagaataaatgaagatgaaccgccttttgtgtatcc 322
||||||||||||||||||||| | |||||||| |||||||||||||| |||| || ||
Sbjct: 132593 gaggaaccaactactgatagttaatagaataaaggaagatgaaccgccccttgtataacc 132652
Query: 323 atatgcaatgtaaacgatcaggaggagagcaacctcaagc 362
|||||||||||| | || |||||||||||||| ||||||
Sbjct: 132653 atatgcaatgtagataatgaggaggagagcaacttcaagc 132692
Score = 170 bits (86), Expect = 7e-040
Identities = 98/102 (96%)
Strand = Plus / Plus
Query: 102 tgctcctcatcccaccaagattcccaactgttgtcaccctttacaccaactccaccttta 161
|||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||
Sbjct: 132167 tgctcctcatcccaccaagattcccagctgttttccccctttacaccaactccaccttta 132226
Query: 162 taaagtaaccagtttgtccagtcatcaaagtcctcaacagtc 203
||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 132227 taaagtaaccaatttgtccagtcatcaaagtcctcaacagtc 132268
Score = 119 bits (60), Expect = 2e-024
Identities = 84/92 (91%)
Strand = Plus / Plus
Query: 362 cgctttgacaaagtgacttcgagaatagagcctataattttcagcaaactttatgtgccg 421
|||||| |||||||| |||||||||||||||| ||||||||| ||||| |||||||| ||
Sbjct: 133155 cgctttcacaaagtggcttcgagaatagagccgataattttcggcaaattttatgtgacg 133214
Query: 422 aacaacaaaacctcttccagtagcacgatact 453
||||||||||||||| ||||||||| ||||||
Sbjct: 133215 aacaacaaaacctctaccagtagcatgatact 133246
Score = 111 bits (56), Expect = 5e-022
Identities = 101/116 (87%)
Strand = Plus / Plus
Query: 452 ctttgcaccgccatgaaggattgttctaccaaagtaatgtgtccttgttccaagcgaaaa 511
||||||||| |||||||| |||||||| ||||| |||||||| || |||||||| || ||
Sbjct: 133319 ctttgcaccaccatgaagtattgttctcccaaaataatgtgttctagttccaagagagaa 133378
Query: 512 ggtgaaaaacaccgaacagaactggagctgcattgtaataaaactaaaaacagcct 567
||||||||||| || |||||||| || ||||||||||||||||| |||| |||||
Sbjct: 133379 tgtgaaaaacactgagcagaactgcagttgcattgtaataaaactgaaaatagcct 133434
Score = 79.8 bits (40), Expect = 2e-012
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 587 aatgaaacccattatcatcgggactgnngtnaaaataccaatctnnnncaaaaattgagc 646
||||||||||||||||||||| |||| || ||||||||||||| ||||||||||||
Sbjct: 133568 aatgaaacccattatcatcggtactgcagtaaaaataccaatctggaccaaaaattgagc 133627
Query: 647 attcaaagc 655
||||||||
Sbjct: 133628 gttcaaagc 133636
Score = 69.9 bits (35), Expect = 2e-009
Identities = 71/83 (85%)
Strand = Plus / Plus
Query: 21 acaatgccatactgaaacatgagaaatctaaggctgaggattgtctcaagaatacgtcct 80
||||||||||| || || || |||||||| ||||| ||||| ||||| || |||||||||
Sbjct: 131988 acaatgccatattggaaaataagaaatctgaggcttaggatagtctctaggatacgtcct 132047
Query: 81 ctgaatgtctggatatgcgcctg 103
|| ||||||||||| || |||||
Sbjct: 132048 cttaatgtctggatgtgggcctg 132070
>dbj|AP001389.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0541H01
Length = 157519
Score = 174 bits (88), Expect = 4e-041
Identities = 142/160 (88%)
Strand = Plus / Plus
Query: 203 cttttgccactcgaaaccagaagggttgaaaatgtaaggcgcgaaaagccaggacataac 262
|||||||||||||||||||||||||||||||||||| || ||||| |||||||||| ||
Sbjct: 9239 cttttgccactcgaaaccagaagggttgaaaatgtatggtgcgaagagccaggacacgac 9298
Query: 263 gaggaaccaactactgatagtaatcagaataaatgaagatgaaccgccttttgtgtatcc 322
||||||||||||||||||||| | |||||||| |||||||||||||| |||| || ||
Sbjct: 9299 gaggaaccaactactgatagttaatagaataaaggaagatgaaccgccccttgtataacc 9358
Query: 323 atatgcaatgtaaacgatcaggaggagagcaacctcaagc 362
|||||||||||| | || |||||||||||||| ||||||
Sbjct: 9359 atatgcaatgtagataatgaggaggagagcaacttcaagc 9398
Score = 170 bits (86), Expect = 7e-040
Identities = 98/102 (96%)
Strand = Plus / Plus
Query: 102 tgctcctcatcccaccaagattcccaactgttgtcaccctttacaccaactccaccttta 161
|||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||
Sbjct: 8873 tgctcctcatcccaccaagattcccagctgttttccccctttacaccaactccaccttta 8932
Query: 162 taaagtaaccagtttgtccagtcatcaaagtcctcaacagtc 203
||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 8933 taaagtaaccaatttgtccagtcatcaaagtcctcaacagtc 8974
Score = 119 bits (60), Expect = 2e-024
Identities = 84/92 (91%)
Strand = Plus / Plus
Query: 362 cgctttgacaaagtgacttcgagaatagagcctataattttcagcaaactttatgtgccg 421
|||||| |||||||| |||||||||||||||| ||||||||| ||||| |||||||| ||
Sbjct: 9861 cgctttcacaaagtggcttcgagaatagagccgataattttcggcaaattttatgtgacg 9920
Query: 422 aacaacaaaacctcttccagtagcacgatact 453
||||||||||||||| ||||||||| ||||||
Sbjct: 9921 aacaacaaaacctctaccagtagcatgatact 9952
Score = 111 bits (56), Expect = 5e-022
Identities = 101/116 (87%)
Strand = Plus / Plus
Query: 452 ctttgcaccgccatgaaggattgttctaccaaagtaatgtgtccttgttccaagcgaaaa 511
||||||||| |||||||| |||||||| ||||| |||||||| || |||||||| || ||
Sbjct: 10025 ctttgcaccaccatgaagtattgttctcccaaaataatgtgttctagttccaagagagaa 10084
Query: 512 ggtgaaaaacaccgaacagaactggagctgcattgtaataaaactaaaaacagcct 567
||||||||||| || |||||||| || ||||||||||||||||| |||| |||||
Sbjct: 10085 tgtgaaaaacactgagcagaactgcagttgcattgtaataaaactgaaaatagcct 10140
Score = 79.8 bits (40), Expect = 2e-012
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 587 aatgaaacccattatcatcgggactgnngtnaaaataccaatctnnnncaaaaattgagc 646
||||||||||||||||||||| |||| || ||||||||||||| ||||||||||||
Sbjct: 10274 aatgaaacccattatcatcggtactgcagtaaaaataccaatctggaccaaaaattgagc 10333
Query: 647 attcaaagc 655
||||||||
Sbjct: 10334 gttcaaagc 10342
Score = 69.9 bits (35), Expect = 2e-009
Identities = 71/83 (85%)
Strand = Plus / Plus
Query: 21 acaatgccatactgaaacatgagaaatctaaggctgaggattgtctcaagaatacgtcct 80
||||||||||| || || || |||||||| ||||| ||||| ||||| || |||||||||
Sbjct: 8694 acaatgccatattggaaaataagaaatctgaggcttaggatagtctctaggatacgtcct 8753
Query: 81 ctgaatgtctggatatgcgcctg 103
|| ||||||||||| || |||||
Sbjct: 8754 cttaatgtctggatgtgggcctg 8776
>ref|NT_107230.2| Oryza sativa (japonica cultivar-group)
Length = 2805126
Score = 174 bits (88), Expect = 4e-041
Identities = 142/160 (88%)
Strand = Plus / Plus
Query: 203 cttttgccactcgaaaccagaagggttgaaaatgtaaggcgcgaaaagccaggacataac 262
|||||||||||||||||||||||||||||||||||| || ||||| |||||||||| ||
Sbjct: 689682 cttttgccactcgaaaccagaagggttgaaaatgtatggtgcgaagagccaggacacgac 689741
Query: 263 gaggaaccaactactgatagtaatcagaataaatgaagatgaaccgccttttgtgtatcc 322
||||||||||||||||||||| | |||||||| |||||||||||||| |||| || ||
Sbjct: 689742 gaggaaccaactactgatagttaatagaataaaggaagatgaaccgccccttgtataacc 689801
Query: 323 atatgcaatgtaaacgatcaggaggagagcaacctcaagc 362
|||||||||||| | || |||||||||||||| ||||||
Sbjct: 689802 atatgcaatgtagataatgaggaggagagcaacttcaagc 689841
Score = 170 bits (86), Expect = 7e-040
Identities = 98/102 (96%)
Strand = Plus / Plus
Query: 102 tgctcctcatcccaccaagattcccaactgttgtcaccctttacaccaactccaccttta 161
|||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||
Sbjct: 689316 tgctcctcatcccaccaagattcccagctgttttccccctttacaccaactccaccttta 689375
Query: 162 taaagtaaccagtttgtccagtcatcaaagtcctcaacagtc 203
||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 689376 taaagtaaccaatttgtccagtcatcaaagtcctcaacagtc 689417
Score = 119 bits (60), Expect = 2e-024
Identities = 84/92 (91%)
Strand = Plus / Plus
Query: 362 cgctttgacaaagtgacttcgagaatagagcctataattttcagcaaactttatgtgccg 421
|||||| |||||||| |||||||||||||||| ||||||||| ||||| |||||||| ||
Sbjct: 690304 cgctttcacaaagtggcttcgagaatagagccgataattttcggcaaattttatgtgacg 690363
Query: 422 aacaacaaaacctcttccagtagcacgatact 453
||||||||||||||| ||||||||| ||||||
Sbjct: 690364 aacaacaaaacctctaccagtagcatgatact 690395
Score = 111 bits (56), Expect = 5e-022
Identities = 101/116 (87%)
Strand = Plus / Plus
Query: 452 ctttgcaccgccatgaaggattgttctaccaaagtaatgtgtccttgttccaagcgaaaa 511
||||||||| |||||||| |||||||| ||||| |||||||| || |||||||| || ||
Sbjct: 690468 ctttgcaccaccatgaagtattgttctcccaaaataatgtgttctagttccaagagagaa 690527
Query: 512 ggtgaaaaacaccgaacagaactggagctgcattgtaataaaactaaaaacagcct 567
||||||||||| || |||||||| || ||||||||||||||||| |||| |||||
Sbjct: 690528 tgtgaaaaacactgagcagaactgcagttgcattgtaataaaactgaaaatagcct 690583
Score = 79.8 bits (40), Expect = 2e-012
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 587 aatgaaacccattatcatcgggactgnngtnaaaataccaatctnnnncaaaaattgagc 646
||||||||||||||||||||| |||| || ||||||||||||| ||||||||||||
Sbjct: 690717 aatgaaacccattatcatcggtactgcagtaaaaataccaatctggaccaaaaattgagc 690776
Query: 647 attcaaagc 655
||||||||
Sbjct: 690777 gttcaaagc 690785
Score = 69.9 bits (35), Expect = 2e-009
Identities = 71/83 (85%)
Strand = Plus / Plus
Query: 21 acaatgccatactgaaacatgagaaatctaaggctgaggattgtctcaagaatacgtcct 80
||||||||||| || || || |||||||| ||||| ||||| ||||| || |||||||||
Sbjct: 689137 acaatgccatattggaaaataagaaatctgaggcttaggatagtctctaggatacgtcct 689196
Query: 81 ctgaatgtctggatatgcgcctg 103
|| ||||||||||| || |||||
Sbjct: 689197 cttaatgtctggatgtgggcctg 689219
>gb|CH401209.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000046
genomic scaffold, whole genome shotgun sequence
Length = 8607552
Score = 174 bits (88), Expect = 4e-041
Identities = 142/160 (88%)
Strand = Plus / Plus
Query: 203 cttttgccactcgaaaccagaagggttgaaaatgtaaggcgcgaaaagccaggacataac 262
|||||||||||||||||||||||||||||||||||| || ||||| |||||||||| ||
Sbjct: 618501 cttttgccactcgaaaccagaagggttgaaaatgtatggtgcgaagagccaggacacgac 618560
Query: 263 gaggaaccaactactgatagtaatcagaataaatgaagatgaaccgccttttgtgtatcc 322
||||||||||||||||||||| | |||||||| |||||||||||||| |||| || ||
Sbjct: 618561 gaggaaccaactactgatagttaatagaataaaggaagatgaaccgccccttgtataacc 618620
Query: 323 atatgcaatgtaaacgatcaggaggagagcaacctcaagc 362
|||||||||||| | || |||||||||||||| ||||||
Sbjct: 618621 atatgcaatgtagataatgaggaggagagcaacttcaagc 618660
Score = 170 bits (86), Expect = 7e-040
Identities = 98/102 (96%)
Strand = Plus / Plus
Query: 102 tgctcctcatcccaccaagattcccaactgttgtcaccctttacaccaactccaccttta 161
|||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||
Sbjct: 618135 tgctcctcatcccaccaagattcccagctgttttccccctttacaccaactccaccttta 618194
Query: 162 taaagtaaccagtttgtccagtcatcaaagtcctcaacagtc 203
||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 618195 taaagtaaccaatttgtccagtcatcaaagtcctcaacagtc 618236
Score = 119 bits (60), Expect = 2e-024
Identities = 84/92 (91%)
Strand = Plus / Plus
Query: 362 cgctttgacaaagtgacttcgagaatagagcctataattttcagcaaactttatgtgccg 421
|||||| |||||||| |||||||||||||||| ||||||||| ||||| |||||||| ||
Sbjct: 619123 cgctttcacaaagtggcttcgagaatagagccgataattttcggcaaattttatgtgacg 619182
Query: 422 aacaacaaaacctcttccagtagcacgatact 453
||||||||||||||| ||||||||| ||||||
Sbjct: 619183 aacaacaaaacctctaccagtagcatgatact 619214
Score = 111 bits (56), Expect = 5e-022
Identities = 101/116 (87%)
Strand = Plus / Plus
Query: 452 ctttgcaccgccatgaaggattgttctaccaaagtaatgtgtccttgttccaagcgaaaa 511
||||||||| |||||||| |||||||| ||||| |||||||| || |||||||| || ||
Sbjct: 619287 ctttgcaccaccatgaagtattgttctcccaaaataatgtgttctagttccaagagagaa 619346
Query: 512 ggtgaaaaacaccgaacagaactggagctgcattgtaataaaactaaaaacagcct 567
||||||||||| || |||||||| || ||||||||||||||||| |||| |||||
Sbjct: 619347 tgtgaaaaacactgagcagaactgcagttgcattgtaataaaactgaaaatagcct 619402
Score = 79.8 bits (40), Expect = 2e-012
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 587 aatgaaacccattatcatcgggactgnngtnaaaataccaatctnnnncaaaaattgagc 646
||||||||||||||||||||| |||| || ||||||||||||| ||||||||||||
Sbjct: 619536 aatgaaacccattatcatcggtactgcagtaaaaataccaatctggaccaaaaattgagc 619595
Query: 647 attcaaagc 655
||||||||
Sbjct: 619596 gttcaaagc 619604
Score = 69.9 bits (35), Expect = 2e-009
Identities = 71/83 (85%)
Strand = Plus / Plus
Query: 21 acaatgccatactgaaacatgagaaatctaaggctgaggattgtctcaagaatacgtcct 80
||||||||||| || || || |||||||| ||||| ||||| ||||| || |||||||||
Sbjct: 617956 acaatgccatattggaaaataagaaatctgaggcttaggatagtctctaggatacgtcct 618015
Query: 81 ctgaatgtctggatatgcgcctg 103
|| ||||||||||| || |||||
Sbjct: 618016 cttaatgtctggatgtgggcctg 618038
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 174 bits (88), Expect = 4e-041
Identities = 142/160 (88%)
Strand = Plus / Plus
Query: 203 cttttgccactcgaaaccagaagggttgaaaatgtaaggcgcgaaaagccaggacataac 262
|||||||||||||||||||||||||||||||||||| || ||||| |||||||||| ||
Sbjct: 618501 cttttgccactcgaaaccagaagggttgaaaatgtatggtgcgaagagccaggacacgac 618560
Query: 263 gaggaaccaactactgatagtaatcagaataaatgaagatgaaccgccttttgtgtatcc 322
||||||||||||||||||||| | |||||||| |||||||||||||| |||| || ||
Sbjct: 618561 gaggaaccaactactgatagttaatagaataaaggaagatgaaccgccccttgtataacc 618620
Query: 323 atatgcaatgtaaacgatcaggaggagagcaacctcaagc 362
|||||||||||| | || |||||||||||||| ||||||
Sbjct: 618621 atatgcaatgtagataatgaggaggagagcaacttcaagc 618660
Score = 170 bits (86), Expect = 7e-040
Identities = 98/102 (96%)
Strand = Plus / Plus
Query: 102 tgctcctcatcccaccaagattcccaactgttgtcaccctttacaccaactccaccttta 161
|||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||
Sbjct: 618135 tgctcctcatcccaccaagattcccagctgttttccccctttacaccaactccaccttta 618194
Query: 162 taaagtaaccagtttgtccagtcatcaaagtcctcaacagtc 203
||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 618195 taaagtaaccaatttgtccagtcatcaaagtcctcaacagtc 618236
Score = 119 bits (60), Expect = 2e-024
Identities = 84/92 (91%)
Strand = Plus / Plus
Query: 362 cgctttgacaaagtgacttcgagaatagagcctataattttcagcaaactttatgtgccg 421
|||||| |||||||| |||||||||||||||| ||||||||| ||||| |||||||| ||
Sbjct: 619123 cgctttcacaaagtggcttcgagaatagagccgataattttcggcaaattttatgtgacg 619182
Query: 422 aacaacaaaacctcttccagtagcacgatact 453
||||||||||||||| ||||||||| ||||||
Sbjct: 619183 aacaacaaaacctctaccagtagcatgatact 619214
Score = 111 bits (56), Expect = 5e-022
Identities = 101/116 (87%)
Strand = Plus / Plus
Query: 452 ctttgcaccgccatgaaggattgttctaccaaagtaatgtgtccttgttccaagcgaaaa 511
||||||||| |||||||| |||||||| ||||| |||||||| || |||||||| || ||
Sbjct: 619287 ctttgcaccaccatgaagtattgttctcccaaaataatgtgttctagttccaagagagaa 619346
Query: 512 ggtgaaaaacaccgaacagaactggagctgcattgtaataaaactaaaaacagcct 567
||||||||||| || |||||||| || ||||||||||||||||| |||| |||||
Sbjct: 619347 tgtgaaaaacactgagcagaactgcagttgcattgtaataaaactgaaaatagcct 619402
Score = 79.8 bits (40), Expect = 2e-012
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 587 aatgaaacccattatcatcgggactgnngtnaaaataccaatctnnnncaaaaattgagc 646
||||||||||||||||||||| |||| || ||||||||||||| ||||||||||||
Sbjct: 619536 aatgaaacccattatcatcggtactgcagtaaaaataccaatctggaccaaaaattgagc 619595
Query: 647 attcaaagc 655
||||||||
Sbjct: 619596 gttcaaagc 619604
Score = 69.9 bits (35), Expect = 2e-009
Identities = 71/83 (85%)
Strand = Plus / Plus
Query: 21 acaatgccatactgaaacatgagaaatctaaggctgaggattgtctcaagaatacgtcct 80
||||||||||| || || || |||||||| ||||| ||||| ||||| || |||||||||
Sbjct: 617956 acaatgccatattggaaaataagaaatctgaggcttaggatagtctctaggatacgtcct 618015
Query: 81 ctgaatgtctggatatgcgcctg 103
|| ||||||||||| || |||||
Sbjct: 618016 cttaatgtctggatgtgggcctg 618038
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
complete sequence
Length = 30731886
Score = 174 bits (88), Expect = 4e-041
Identities = 142/160 (88%)
Strand = Plus / Plus
Query: 203 cttttgccactcgaaaccagaagggttgaaaatgtaaggcgcgaaaagccaggacataac 262
|||||||||||||||||||||||||||||||||||| || ||||| |||||||||| ||
Sbjct: 726105 cttttgccactcgaaaccagaagggttgaaaatgtatggtgcgaagagccaggacacgac 726164
Query: 263 gaggaaccaactactgatagtaatcagaataaatgaagatgaaccgccttttgtgtatcc 322
||||||||||||||||||||| | |||||||| |||||||||||||| |||| || ||
Sbjct: 726165 gaggaaccaactactgatagttaatagaataaaggaagatgaaccgccccttgtataacc 726224
Query: 323 atatgcaatgtaaacgatcaggaggagagcaacctcaagc 362
|||||||||||| | || |||||||||||||| ||||||
Sbjct: 726225 atatgcaatgtagataatgaggaggagagcaacttcaagc 726264
Score = 170 bits (86), Expect = 7e-040
Identities = 98/102 (96%)
Strand = Plus / Plus
Query: 102 tgctcctcatcccaccaagattcccaactgttgtcaccctttacaccaactccaccttta 161
|||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||
Sbjct: 725739 tgctcctcatcccaccaagattcccagctgttttccccctttacaccaactccaccttta 725798
Query: 162 taaagtaaccagtttgtccagtcatcaaagtcctcaacagtc 203
||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 725799 taaagtaaccaatttgtccagtcatcaaagtcctcaacagtc 725840
Score = 119 bits (60), Expect = 2e-024
Identities = 84/92 (91%)
Strand = Plus / Plus
Query: 362 cgctttgacaaagtgacttcgagaatagagcctataattttcagcaaactttatgtgccg 421
|||||| |||||||| |||||||||||||||| ||||||||| ||||| |||||||| ||
Sbjct: 726727 cgctttcacaaagtggcttcgagaatagagccgataattttcggcaaattttatgtgacg 726786
Query: 422 aacaacaaaacctcttccagtagcacgatact 453
||||||||||||||| ||||||||| ||||||
Sbjct: 726787 aacaacaaaacctctaccagtagcatgatact 726818
Score = 111 bits (56), Expect = 5e-022
Identities = 101/116 (87%)
Strand = Plus / Plus
Query: 452 ctttgcaccgccatgaaggattgttctaccaaagtaatgtgtccttgttccaagcgaaaa 511
||||||||| |||||||| |||||||| ||||| |||||||| || |||||||| || ||
Sbjct: 726891 ctttgcaccaccatgaagtattgttctcccaaaataatgtgttctagttccaagagagaa 726950
Query: 512 ggtgaaaaacaccgaacagaactggagctgcattgtaataaaactaaaaacagcct 567
||||||||||| || |||||||| || ||||||||||||||||| |||| |||||
Sbjct: 726951 tgtgaaaaacactgagcagaactgcagttgcattgtaataaaactgaaaatagcct 727006
Score = 79.8 bits (40), Expect = 2e-012
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 587 aatgaaacccattatcatcgggactgnngtnaaaataccaatctnnnncaaaaattgagc 646
||||||||||||||||||||| |||| || ||||||||||||| ||||||||||||
Sbjct: 727140 aatgaaacccattatcatcggtactgcagtaaaaataccaatctggaccaaaaattgagc 727199
Query: 647 attcaaagc 655
||||||||
Sbjct: 727200 gttcaaagc 727208
Score = 69.9 bits (35), Expect = 2e-009
Identities = 71/83 (85%)
Strand = Plus / Plus
Query: 21 acaatgccatactgaaacatgagaaatctaaggctgaggattgtctcaagaatacgtcct 80
||||||||||| || || || |||||||| ||||| ||||| ||||| || |||||||||
Sbjct: 725560 acaatgccatattggaaaataagaaatctgaggcttaggatagtctctaggatacgtcct 725619
Query: 81 ctgaatgtctggatatgcgcctg 103
|| ||||||||||| || |||||
Sbjct: 725620 cttaatgtctggatgtgggcctg 725642
>gb|CB684141.1|CB684141 OSJNEf13F24.r OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf13F24 3', mRNA sequence
Length = 808
Score = 165 bits (83), Expect = 4e-038
Identities = 131/147 (89%)
Strand = Plus / Plus
Query: 21 acaatgccatactgaaacatgagaaatctaaggctgaggattgtctcaagaatacgtcct 80
||||||||||| || || || |||||||| ||||| ||||| ||||| || |||||||||
Sbjct: 662 acaatgccatattggaaaataagaaatctgaggcttaggatagtctctaggatacgtcct 721
Query: 81 ctgaatgtctggatatgcgcctgctcctcatcccaccaagattcccaactgttgtcaccc 140
|| ||||||||||| || || |||||||||||||||||||||||||| ||||| || |||
Sbjct: 722 cttaatgtctggatgtgggcttgctcctcatcccaccaagattcccagctgttttccccc 781
Query: 141 tttacaccaactccacctttataaagt 167
|||||||||||||||||||||||||||
Sbjct: 782 tttacaccaactccacctttataaagt 808
>dbj|AK099782.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013095O05, full
insert sequence
Length = 5774
Score = 67.9 bits (34), Expect = 7e-009
Identities = 73/86 (84%)
Strand = Plus / Minus
Query: 390 agcctataattttcagcaaactttatgtgccgaacaacaaaacctcttccagtagcacga 449
||||| |||||||||||||| | | ||| | ||||||||||| | ||||||||||||
Sbjct: 4622 agcctgtaattttcagcaaaactcttatgctgcacaacaaaaccacggccagtagcacga 4563
Query: 450 tactttgcaccgccatgaaggattgt 475
||||| |||||||||||||| |||||
Sbjct: 4562 tacttagcaccgccatgaagaattgt 4537
>dbj|AK099834.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013106H04, full
insert sequence
Length = 1501
Score = 67.9 bits (34), Expect = 7e-009
Identities = 73/86 (84%)
Strand = Plus / Minus
Query: 390 agcctataattttcagcaaactttatgtgccgaacaacaaaacctcttccagtagcacga 449
||||| |||||||||||||| | | ||| | ||||||||||| | ||||||||||||
Sbjct: 319 agcctgtaattttcagcaaaactcttatgctgcacaacaaaaccacggccagtagcacga 260
Query: 450 tactttgcaccgccatgaaggattgt 475
||||| |||||||||||||| |||||
Sbjct: 259 tacttagcaccgccatgaagaattgt 234
>dbj|AK120195.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013036H01, full
insert sequence
Length = 5949
Score = 67.9 bits (34), Expect = 7e-009
Identities = 73/86 (84%)
Strand = Plus / Minus
Query: 390 agcctataattttcagcaaactttatgtgccgaacaacaaaacctcttccagtagcacga 449
||||| |||||||||||||| | | ||| | ||||||||||| | ||||||||||||
Sbjct: 4526 agcctgtaattttcagcaaaactcttatgctgcacaacaaaaccacggccagtagcacga 4467
Query: 450 tactttgcaccgccatgaaggattgt 475
||||| |||||||||||||| |||||
Sbjct: 4466 tacttagcaccgccatgaagaattgt 4441
>dbj|AK120402.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013088I17, full
insert sequence
Length = 5396
Score = 67.9 bits (34), Expect = 7e-009
Identities = 73/86 (84%)
Strand = Plus / Minus
Query: 390 agcctataattttcagcaaactttatgtgccgaacaacaaaacctcttccagtagcacga 449
||||| |||||||||||||| | | ||| | ||||||||||| | ||||||||||||
Sbjct: 4211 agcctgtaattttcagcaaaactcttatgctgcacaacaaaaccacggccagtagcacga 4152
Query: 450 tactttgcaccgccatgaaggattgt 475
||||| |||||||||||||| |||||
Sbjct: 4151 tacttagcaccgccatgaagaattgt 4126
>gb|AACV01002367.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002367, whole
genome shotgun sequence
Length = 23038
Score = 67.9 bits (34), Expect = 7e-009
Identities = 73/86 (84%)
Strand = Plus / Minus
Query: 390 agcctataattttcagcaaactttatgtgccgaacaacaaaacctcttccagtagcacga 449
||||| |||||||||||||| | | ||| | ||||||||||| | ||||||||||||
Sbjct: 12463 agcctgtaattttcagcaaaactcttatgctgcacaacaaaaccacggccagtagcacga 12404
Query: 450 tactttgcaccgccatgaaggattgt 475
||||| |||||||||||||| |||||
Sbjct: 12403 tacttagcaccgccatgaagaattgt 12378
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 67.9 bits (34), Expect = 7e-009
Identities = 73/86 (84%)
Strand = Plus / Plus
Query: 390 agcctataattttcagcaaactttatgtgccgaacaacaaaacctcttccagtagcacga 449
||||| |||||||||||||| | | ||| | ||||||||||| | ||||||||||||
Sbjct: 31717580 agcctgtaattttcagcaaaactcttatgctgcacaacaaaaccacggccagtagcacga 31717639
Query: 450 tactttgcaccgccatgaaggattgt 475
||||| |||||||||||||| |||||
Sbjct: 31717640 tacttagcaccgccatgaagaattgt 31717665
Score = 65.9 bits (33), Expect = 3e-008
Identities = 93/113 (82%)
Strand = Plus / Plus
Query: 363 gctttgacaaagtgacttcgagaatagagcctataattttcagcaaactttatgtgccga 422
||||||| ||||| || |||| ||| |||||||||||||| ||||| ||| |||||
Sbjct: 27681998 gctttgatgaagtggctacgagcatacagcctataattttctgcaaattttttgtgctcc 27682057
Query: 423 acaacaaaacctcttccagtagcacgatactttgcaccgccatgaaggattgt 475
||||||||||| | ||||| || ||||| |||||||| |||||||| |||||
Sbjct: 27682058 acaacaaaaccacggccagtggctcgatattttgcacctccatgaagaattgt 27682110
>ref|NM_191270.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 5373
Score = 67.9 bits (34), Expect = 7e-009
Identities = 73/86 (84%)
Strand = Plus / Minus
Query: 390 agcctataattttcagcaaactttatgtgccgaacaacaaaacctcttccagtagcacga 449
||||| |||||||||||||| | | ||| | ||||||||||| | ||||||||||||
Sbjct: 4487 agcctgtaattttcagcaaaactcttatgctgcacaacaaaaccacggccagtagcacga 4428
Query: 450 tactttgcaccgccatgaaggattgt 475
||||| |||||||||||||| |||||
Sbjct: 4427 tacttagcaccgccatgaagaattgt 4402
>ref|NT_079927.2| Oryza sativa (japonica cultivar-group)
Length = 14818989
Score = 67.9 bits (34), Expect = 7e-009
Identities = 73/86 (84%)
Strand = Plus / Plus
Query: 390 agcctataattttcagcaaactttatgtgccgaacaacaaaacctcttccagtagcacga 449
||||| |||||||||||||| | | ||| | ||||||||||| | ||||||||||||
Sbjct: 6164963 agcctgtaattttcagcaaaactcttatgctgcacaacaaaaccacggccagtagcacga 6165022
Query: 450 tactttgcaccgccatgaaggattgt 475
||||| |||||||||||||| |||||
Sbjct: 6165023 tacttagcaccgccatgaagaattgt 6165048
Score = 65.9 bits (33), Expect = 3e-008
Identities = 93/113 (82%)
Strand = Plus / Plus
Query: 363 gctttgacaaagtgacttcgagaatagagcctataattttcagcaaactttatgtgccga 422
||||||| ||||| || |||| ||| |||||||||||||| ||||| ||| |||||
Sbjct: 2129381 gctttgatgaagtggctacgagcatacagcctataattttctgcaaattttttgtgctcc 2129440
Query: 423 acaacaaaacctcttccagtagcacgatactttgcaccgccatgaaggattgt 475
||||||||||| | ||||| || ||||| |||||||| |||||||| |||||
Sbjct: 2129441 acaacaaaaccacggccagtggctcgatattttgcacctccatgaagaattgt 2129493
>dbj|AP003249.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0435B05
Length = 150997
Score = 67.9 bits (34), Expect = 7e-009
Identities = 73/86 (84%)
Strand = Plus / Plus
Query: 390 agcctataattttcagcaaactttatgtgccgaacaacaaaacctcttccagtagcacga 449
||||| |||||||||||||| | | ||| | ||||||||||| | ||||||||||||
Sbjct: 149933 agcctgtaattttcagcaaaactcttatgctgcacaacaaaaccacggccagtagcacga 149992
Query: 450 tactttgcaccgccatgaaggattgt 475
||||| |||||||||||||| |||||
Sbjct: 149993 tacttagcaccgccatgaagaattgt 150018
>dbj|AP003268.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0503C12
Length = 147180
Score = 67.9 bits (34), Expect = 7e-009
Identities = 73/86 (84%)
Strand = Plus / Plus
Query: 390 agcctataattttcagcaaactttatgtgccgaacaacaaaacctcttccagtagcacga 449
||||| |||||||||||||| | | ||| | ||||||||||| | ||||||||||||
Sbjct: 50642 agcctgtaattttcagcaaaactcttatgctgcacaacaaaaccacggccagtagcacga 50701
Query: 450 tactttgcaccgccatgaaggattgt 475
||||| |||||||||||||| |||||
Sbjct: 50702 tacttagcaccgccatgaagaattgt 50727
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 67.9 bits (34), Expect = 7e-009
Identities = 73/86 (84%)
Strand = Plus / Plus
Query: 390 agcctataattttcagcaaactttatgtgccgaacaacaaaacctcttccagtagcacga 449
||||| |||||||||||||| | | ||| | ||||||||||| | ||||||||||||
Sbjct: 6067606 agcctgtaattttcagcaaaactcttatgctgcacaacaaaaccacggccagtagcacga 6067665
Query: 450 tactttgcaccgccatgaaggattgt 475
||||| |||||||||||||| |||||
Sbjct: 6067666 tacttagcaccgccatgaagaattgt 6067691
Score = 65.9 bits (33), Expect = 3e-008
Identities = 93/113 (82%)
Strand = Plus / Plus
Query: 363 gctttgacaaagtgacttcgagaatagagcctataattttcagcaaactttatgtgccga 422
||||||| ||||| || |||| ||| |||||||||||||| ||||| ||| |||||
Sbjct: 2069832 gctttgatgaagtggctacgagcatacagcctataattttctgcaaattttttgtgctcc 2069891
Query: 423 acaacaaaacctcttccagtagcacgatactttgcaccgccatgaaggattgt 475
||||||||||| | ||||| || ||||| |||||||| |||||||| |||||
Sbjct: 2069892 acaacaaaaccacggccagtggctcgatattttgcacctccatgaagaattgt 2069944
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 67.9 bits (34), Expect = 7e-009
Identities = 73/86 (84%)
Strand = Plus / Plus
Query: 390 agcctataattttcagcaaactttatgtgccgaacaacaaaacctcttccagtagcacga 449
||||| |||||||||||||| | | ||| | ||||||||||| | ||||||||||||
Sbjct: 31269327 agcctgtaattttcagcaaaactcttatgctgcacaacaaaaccacggccagtagcacga 31269386
Query: 450 tactttgcaccgccatgaaggattgt 475
||||| |||||||||||||| |||||
Sbjct: 31269387 tacttagcaccgccatgaagaattgt 31269412
Score = 65.9 bits (33), Expect = 3e-008
Identities = 93/113 (82%)
Strand = Plus / Plus
Query: 363 gctttgacaaagtgacttcgagaatagagcctataattttcagcaaactttatgtgccga 422
||||||| ||||| || |||| ||| |||||||||||||| ||||| ||| |||||
Sbjct: 27271553 gctttgatgaagtggctacgagcatacagcctataattttctgcaaattttttgtgctcc 27271612
Query: 423 acaacaaaacctcttccagtagcacgatactttgcaccgccatgaaggattgt 475
||||||||||| | ||||| || ||||| |||||||| |||||||| |||||
Sbjct: 27271613 acaacaaaaccacggccagtggctcgatattttgcacctccatgaagaattgt 27271665
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 67.9 bits (34), Expect = 7e-009
Identities = 73/86 (84%)
Strand = Plus / Plus
Query: 390 agcctataattttcagcaaactttatgtgccgaacaacaaaacctcttccagtagcacga 449
||||| |||||||||||||| | | ||| | ||||||||||| | ||||||||||||
Sbjct: 31636910 agcctgtaattttcagcaaaactcttatgctgcacaacaaaaccacggccagtagcacga 31636969
Query: 450 tactttgcaccgccatgaaggattgt 475
||||| |||||||||||||| |||||
Sbjct: 31636970 tacttagcaccgccatgaagaattgt 31636995
Score = 65.9 bits (33), Expect = 3e-008
Identities = 93/113 (82%)
Strand = Plus / Plus
Query: 363 gctttgacaaagtgacttcgagaatagagcctataattttcagcaaactttatgtgccga 422
||||||| ||||| || |||| ||| |||||||||||||| ||||| ||| |||||
Sbjct: 27601328 gctttgatgaagtggctacgagcatacagcctataattttctgcaaattttttgtgctcc 27601387
Query: 423 acaacaaaacctcttccagtagcacgatactttgcaccgccatgaaggattgt 475
||||||||||| | ||||| || ||||| |||||||| |||||||| |||||
Sbjct: 27601388 acaacaaaaccacggccagtggctcgatattttgcacctccatgaagaattgt 27601440
>dbj|AK060407.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-010-D06, full
insert sequence
Length = 1749
Score = 65.9 bits (33), Expect = 3e-008
Identities = 93/113 (82%)
Strand = Plus / Minus
Query: 363 gctttgacaaagtgacttcgagaatagagcctataattttcagcaaactttatgtgccga 422
||||||| ||||| || |||| ||| |||||||||||||| ||||| ||| |||||
Sbjct: 570 gctttgatgaagtggctacgagcatacagcctataattttctgcaaattttttgtgctcc 511
Query: 423 acaacaaaacctcttccagtagcacgatactttgcaccgccatgaaggattgt 475
||||||||||| | ||||| || ||||| |||||||| |||||||| |||||
Sbjct: 510 acaacaaaaccacggccagtggctcgatattttgcacctccatgaagaattgt 458
>gb|AACV01002091.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002091, whole
genome shotgun sequence
Length = 57249
Score = 65.9 bits (33), Expect = 3e-008
Identities = 93/113 (82%)
Strand = Plus / Minus
Query: 363 gctttgacaaagtgacttcgagaatagagcctataattttcagcaaactttatgtgccga 422
||||||| ||||| || |||| ||| |||||||||||||| ||||| ||| |||||
Sbjct: 41911 gctttgatgaagtggctacgagcatacagcctataattttctgcaaattttttgtgctcc 41852
Query: 423 acaacaaaacctcttccagtagcacgatactttgcaccgccatgaaggattgt 475
||||||||||| | ||||| || ||||| |||||||| |||||||| |||||
Sbjct: 41851 acaacaaaaccacggccagtggctcgatattttgcacctccatgaagaattgt 41799
>ref|NM_191973.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 5310
Score = 65.9 bits (33), Expect = 3e-008
Identities = 93/113 (82%)
Strand = Plus / Minus
Query: 363 gctttgacaaagtgacttcgagaatagagcctataattttcagcaaactttatgtgccga 422
||||||| ||||| || |||| ||| |||||||||||||| ||||| ||| |||||
Sbjct: 4448 gctttgatgaagtggctacgagcatacagcctataattttctgcaaattttttgtgctcc 4389
Query: 423 acaacaaaacctcttccagtagcacgatactttgcaccgccatgaaggattgt 475
||||||||||| | ||||| || ||||| |||||||| |||||||| |||||
Sbjct: 4388 acaacaaaaccacggccagtggctcgatattttgcacctccatgaagaattgt 4336
>dbj|AP003223.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0007F06
Length = 150817
Score = 65.9 bits (33), Expect = 3e-008
Identities = 93/113 (82%)
Strand = Plus / Plus
Query: 363 gctttgacaaagtgacttcgagaatagagcctataattttcagcaaactttatgtgccga 422
||||||| ||||| || |||| ||| |||||||||||||| ||||| ||| |||||
Sbjct: 68622 gctttgatgaagtggctacgagcatacagcctataattttctgcaaattttttgtgctcc 68681
Query: 423 acaacaaaacctcttccagtagcacgatactttgcaccgccatgaaggattgt 475
||||||||||| | ||||| || ||||| |||||||| |||||||| |||||
Sbjct: 68682 acaacaaaaccacggccagtggctcgatattttgcacctccatgaagaattgt 68734
>dbj|AP003264.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0485G01
Length = 167203
Score = 65.9 bits (33), Expect = 3e-008
Identities = 93/113 (82%)
Strand = Plus / Plus
Query: 363 gctttgacaaagtgacttcgagaatagagcctataattttcagcaaactttatgtgccga 422
||||||| ||||| || |||| ||| |||||||||||||| ||||| ||| |||||
Sbjct: 9894 gctttgatgaagtggctacgagcatacagcctataattttctgcaaattttttgtgctcc 9953
Query: 423 acaacaaaacctcttccagtagcacgatactttgcaccgccatgaaggattgt 475
||||||||||| | ||||| || ||||| |||||||| |||||||| |||||
Sbjct: 9954 acaacaaaaccacggccagtggctcgatattttgcacctccatgaagaattgt 10006
>dbj|BA000029.3| Oryza sativa (japonica cultivar-group) mitochondrial DNA, complete genome
Length = 490520
Score = 65.9 bits (33), Expect = 3e-008
Identities = 120/149 (80%)
Strand = Plus / Plus
Query: 396 taattttcagcaaactttatgtgccgaacaacaaaacctcttccagtagcacgatacttt 455
||||| ||||||||| ||| || ||||||||||||||||| ||||| || | ||| |||
Sbjct: 300114 taattctcagcaaaccttacatggcgaacaacaaaacctctgccagttgctctatatttt 300173
Query: 456 gcaccgccatgaaggattgttctaccaaagtaatgtgtccttgttccaagcgaaaaggtg 515
||||| ||||| || ||||| | ||||| ||||||| | | || ||||| | || |||
Sbjct: 300174 gcaccaccatggagaattgtgcggccaaaataatgtgacttggtcccaaggtagaaagtg 300233
Query: 516 aaaaacaccgaacagaactggagctgcat 544
|| ||||| ||||||| ||| ||||||||
Sbjct: 300234 aagaacactgaacagagctgaagctgcat 300262
>dbj|AG209903.1| Oryza sativa (japonica cultivar-group) DNA, clone:NE8518_0_502_1A,
3' flanking sequence of Tos17 insertion in rice strain
NE8518, genomic survey sequence
Length = 635
Score = 50.1 bits (25), Expect = 0.002
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 364 ctttgacaaagtgacttcgagaatagagcctataattttcagcaaactt 412
|||| ||||||||||| |||||||| ||||| ||||| || ||||||||
Sbjct: 511 ctttaacaaagtgactgcgagaataaagcctgtaattctctgcaaactt 559
>dbj|AG212141.1| Oryza sativa (japonica cultivar-group) DNA, clone:NF7001_0_501_1A,
3' flanking sequence of Tos17 insertion in rice strain
NF7001, genomic survey sequence
Length = 582
Score = 50.1 bits (25), Expect = 0.002
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 364 ctttgacaaagtgacttcgagaatagagcctataattttcagcaaactt 412
|||| ||||||||||| |||||||| ||||| ||||| || ||||||||
Sbjct: 485 ctttaacaaagtgactgcgagaataaagcctgtaattctctgcaaactt 533
>dbj|AG206827.1| Oryza sativa (japonica cultivar-group) DNA, clone:ND6025_0_505_1A,
3' flanking sequence of Tos17 insertion in rice strain
ND6025, genomic survey sequence
Length = 371
Score = 50.1 bits (25), Expect = 0.002
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 364 ctttgacaaagtgacttcgagaatagagcctataattttcagcaaactt 412
|||| ||||||||||| |||||||| ||||| ||||| || ||||||||
Sbjct: 241 ctttaacaaagtgactgcgagaataaagcctgtaattctctgcaaactt 289
>dbj|AG206969.1| Oryza sativa (japonica cultivar-group) DNA, clone:ND6058_0_401_1A,
3' flanking sequence of Tos17 insertion in rice strain
ND6058, genomic survey sequence
Length = 611
Score = 50.1 bits (25), Expect = 0.002
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 364 ctttgacaaagtgacttcgagaatagagcctataattttcagcaaactt 412
|||| ||||||||||| |||||||| ||||| ||||| || ||||||||
Sbjct: 55 ctttaacaaagtgactgcgagaataaagcctgtaattctctgcaaactt 7
>dbj|AB157743.1| Oryza sativa (japonica cultivar-group) DNA, clone:T29631T, 3'
flanking sequence of Tos17 insertion in rice strain
NG2031, genomic survey sequence
Length = 515
Score = 50.1 bits (25), Expect = 0.002
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 364 ctttgacaaagtgacttcgagaatagagcctataattttcagcaaactt 412
|||| ||||||||||| |||||||| ||||| ||||| || ||||||||
Sbjct: 255 ctttaacaaagtgactgcgagaataaagcctgtaattctctgcaaactt 303
>gb|CB642889.1|CB642889 OSJNEb03E21.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb03E21 5', mRNA sequence
Length = 734
Score = 50.1 bits (25), Expect = 0.002
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 364 ctttgacaaagtgacttcgagaatagagcctataattttcagcaaactt 412
|||| ||||||||||| |||||||| ||||| ||||| || ||||||||
Sbjct: 510 ctttaacaaagtgactgcgagaataaagcctgtaattctctgcaaactt 462
>gb|CB662166.1|CB662166 OSJNEd05O23.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd05O23 5', mRNA sequence
Length = 824
Score = 50.1 bits (25), Expect = 0.002
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 364 ctttgacaaagtgacttcgagaatagagcctataattttcagcaaactt 412
|||| ||||||||||| |||||||| ||||| ||||| || ||||||||
Sbjct: 81 ctttaacaaagtgactgcgagaataaagcctgtaattctctgcaaactt 33
>gb|CB677902.1|CB677902 OSJNEe15F12.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe15F12 5', mRNA sequence
Length = 775
Score = 50.1 bits (25), Expect = 0.002
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 364 ctttgacaaagtgacttcgagaatagagcctataattttcagcaaactt 412
|||| ||||||||||| |||||||| ||||| ||||| || ||||||||
Sbjct: 374 ctttaacaaagtgactgcgagaataaagcctgtaattctctgcaaactt 326
>dbj|AK062279.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-100-C02, full
insert sequence
Length = 2219
Score = 50.1 bits (25), Expect = 0.002
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 364 ctttgacaaagtgacttcgagaatagagcctataattttcagcaaactt 412
|||| ||||||||||| |||||||| ||||| ||||| || ||||||||
Sbjct: 1004 ctttaacaaagtgactgcgagaataaagcctgtaattctctgcaaactt 956
>gb|AC104427.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1015F07,
complete sequence
Length = 117612
Score = 50.1 bits (25), Expect = 0.002
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 364 ctttgacaaagtgacttcgagaatagagcctataattttcagcaaactt 412
|||| ||||||||||| |||||||| ||||| ||||| || ||||||||
Sbjct: 100667 ctttaacaaagtgactgcgagaataaagcctgtaattctctgcaaactt 100715
>gb|AC144426.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJA1015F07,
complete sequence
Length = 127098
Score = 50.1 bits (25), Expect = 0.002
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 364 ctttgacaaagtgacttcgagaatagagcctataattttcagcaaactt 412
|||| ||||||||||| |||||||| ||||| ||||| || ||||||||
Sbjct: 43055 ctttaacaaagtgactgcgagaataaagcctgtaattctctgcaaactt 43103
>dbj|AK105008.2| Oryza sativa (japonica cultivar-group) cDNA clone:001-006-G07, full
insert sequence
Length = 1992
Score = 50.1 bits (25), Expect = 0.002
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 364 ctttgacaaagtgacttcgagaatagagcctataattttcagcaaactt 412
|||| ||||||||||| |||||||| ||||| ||||| || ||||||||
Sbjct: 705 ctttaacaaagtgactgcgagaataaagcctgtaattctctgcaaactt 657
>dbj|AP005649.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OSJNBa0064G16
Length = 166453
Score = 50.1 bits (25), Expect = 0.002
Identities = 112/141 (79%)
Strand = Plus / Plus
Query: 404 agcaaactttatgtgccgaacaacaaaacctcttccagtagcacgatactttgcaccgcc 463
||||||||||| || |||||||||||| |||| ||||| || | ||| |||||||| ||
Sbjct: 8535 agcaaactttacatggcgaacaacaaaatctctgccagttgctctatattttgcaccacc 8594
Query: 464 atgaaggattgttctaccaaagtaatgtgtccttgttccaagcgaaaaggtgaaaaacac 523
||| || ||||| ||||| ||||||| | | || ||||| | || ||||| |||||
Sbjct: 8595 atggagaattgtatggccaaaataatgtgacttggtcccaagatagaaagtgaagaacac 8654
Query: 524 cgaacagaactggagctgcat 544
||||||| ||| ||||||||
Sbjct: 8655 tgaacagagctgaagctgcat 8675
>gb|AACV01003332.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg003332, whole
genome shotgun sequence
Length = 44353
Score = 50.1 bits (25), Expect = 0.002
Identities = 112/141 (79%)
Strand = Plus / Plus
Query: 404 agcaaactttatgtgccgaacaacaaaacctcttccagtagcacgatactttgcaccgcc 463
||||||||||| || |||||||||||| |||| ||||| || | ||| |||||||| ||
Sbjct: 12674 agcaaactttacatggcgaacaacaaaatctctgccagttgctctatattttgcaccacc 12733
Query: 464 atgaaggattgttctaccaaagtaatgtgtccttgttccaagcgaaaaggtgaaaaacac 523
||| || ||||| ||||| ||||||| | | || ||||| | || ||||| |||||
Sbjct: 12734 atggagaattgtatggccaaaataatgtgacttggtcccaagatagaaagtgaagaacac 12793
Query: 524 cgaacagaactggagctgcat 544
||||||| ||| ||||||||
Sbjct: 12794 tgaacagagctgaagctgcat 12814
>gb|AACV01005795.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg005795, whole
genome shotgun sequence
Length = 23395
Score = 50.1 bits (25), Expect = 0.002
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 364 ctttgacaaagtgacttcgagaatagagcctataattttcagcaaactt 412
|||| ||||||||||| |||||||| ||||| ||||| || ||||||||
Sbjct: 20379 ctttaacaaagtgactgcgagaataaagcctgtaattctctgcaaactt 20331
>ref|NM_187591.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 4929
Score = 50.1 bits (25), Expect = 0.002
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 364 ctttgacaaagtgacttcgagaatagagcctataattttcagcaaactt 412
|||| ||||||||||| |||||||| ||||| ||||| || ||||||||
Sbjct: 4051 ctttaacaaagtgactgcgagaataaagcctgtaattctctgcaaactt 4003
>ref|NT_107183.1| Oryza sativa (japonica cultivar-group)
Length = 1680144
Score = 50.1 bits (25), Expect = 0.002
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 364 ctttgacaaagtgacttcgagaatagagcctataattttcagcaaactt 412
|||| ||||||||||| |||||||| ||||| ||||| || ||||||||
Sbjct: 1563492 ctttaacaaagtgactgcgagaataaagcctgtaattctctgcaaactt 1563540
>ref|NT_107175.1| Oryza sativa (japonica cultivar-group)
Length = 2882457
Score = 50.1 bits (25), Expect = 0.002
Identities = 112/141 (79%)
Strand = Plus / Plus
Query: 404 agcaaactttatgtgccgaacaacaaaacctcttccagtagcacgatactttgcaccgcc 463
||||||||||| || |||||||||||| |||| ||||| || | ||| |||||||| ||
Sbjct: 2392614 agcaaactttacatggcgaacaacaaaatctctgccagttgctctatattttgcaccacc 2392673
Query: 464 atgaaggattgttctaccaaagtaatgtgtccttgttccaagcgaaaaggtgaaaaacac 523
||| || ||||| ||||| ||||||| | | || ||||| | || ||||| |||||
Sbjct: 2392674 atggagaattgtatggccaaaataatgtgacttggtcccaagatagaaagtgaagaacac 2392733
Query: 524 cgaacagaactggagctgcat 544
||||||| ||| ||||||||
Sbjct: 2392734 tgaacagagctgaagctgcat 2392754
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
scaffold, whole genome shotgun sequence
Length = 13858245
Score = 50.1 bits (25), Expect = 0.002
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 364 ctttgacaaagtgacttcgagaatagagcctataattttcagcaaactt 412
|||| ||||||||||| |||||||| ||||| ||||| || ||||||||
Sbjct: 1569548 ctttaacaaagtgactgcgagaataaagcctgtaattctctgcaaactt 1569596
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 875,580
Number of Sequences: 438736
Number of extensions: 875580
Number of successful extensions: 4423
Number of sequences better than 0.5: 59
Number of HSP's better than 0.5 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4112
Number of HSP's gapped (non-prelim): 298
length of query: 709
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 688
effective length of database: 2,791,206,460
effective search space: 1920350044480
effective search space used: 1920350044480
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)