BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAE37h07.yg.2.1
(642 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK059569.1| Oryza sativa (japonica cultivar-group) cDNA... 291 2e-076
dbj|AK071856.1| Oryza sativa (japonica cultivar-group) cDNA... 291 2e-076
ref|XM_550490.1| Oryza sativa (japonica cultivar-group), mRNA 291 2e-076
gb|AACV01012882.1| Oryza sativa (japonica cultivar-group) c... 143 1e-031
dbj|AP001552.1| Oryza sativa (japonica cultivar-group) gene... 143 1e-031
dbj|AP001389.1| Oryza sativa (japonica cultivar-group) geno... 143 1e-031
ref|NT_107230.2| Oryza sativa (japonica cultivar-group) 143 1e-031
gb|CH401209.1| Oryza sativa (japonica cultivar-group) chrom... 143 1e-031
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 143 1e-031
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 143 1e-031
gb|CB684140.1|CB684140 OSJNEf13F24.f OSJNEf Oryza sativa (j... 113 1e-022
gb|CB684141.1|CB684141 OSJNEf13F24.r OSJNEf Oryza sativa (j... 111 5e-022
>dbj|AK059569.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-H12, full
insert sequence
Length = 1235
Score = 291 bits (147), Expect = 2e-076
Identities = 220/248 (88%)
Strand = Plus / Minus
Query: 43 gtctcaagaatacgtcctctgaatgtctggatatgcgcctgctcctcatcccaccaagat 102
||||| || ||||||||||| ||||||||||| || || |||||||||||||||||||||
Sbjct: 431 gtctctaggatacgtcctcttaatgtctggatgtgggcttgctcctcatcccaccaagat 372
Query: 103 tcccaactnnnnncaccctttacaccaactccacctttataaannnaccannntgtccag 162
||||| || | |||||||||||||||||||||||||||| |||| |||||||
Sbjct: 371 tcccagctgttttccccctttacaccaactccacctttataaagtaaccaatttgtccag 312
Query: 163 tcatcaaagtcctcaacagtcttttgccactcgaaaccagaagggttgaaaatgtaaggc 222
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 311 tcatcaaagtcctcaacagtcttttgccactcgaaaccagaagggttgaaaatgtatggt 252
Query: 223 gcgaaaagccaggacataacgaggaaccaactactgatagtaatcagaataaatgaagat 282
||||| |||||||||| ||||||||||||||||||||||| | |||||||| ||||||
Sbjct: 251 gcgaagagccaggacacgacgaggaaccaactactgatagttaatagaataaaggaagat 192
Query: 283 gaaccgcc 290
||||||||
Sbjct: 191 gaaccgcc 184
Score = 121 bits (61), Expect = 5e-025
Identities = 101/117 (86%)
Strand = Plus / Minus
Query: 322 aggaggagagcaacctcaagcgctttgacaaagtgacttnnagaatagagcctataattt 381
|||||||||||||| ||||||||||| |||||||| ||| ||||||||||| |||||||
Sbjct: 152 aggaggagagcaacttcaagcgctttcacaaagtggcttcgagaatagagccgataattt 93
Query: 382 tcagcaaacnttatgtgccnnacaacaaaacctctnnnagtagcacgatactttgca 438
|| ||||| ||||||| | |||||||||||||| ||||||| |||||||||||
Sbjct: 92 tcggcaaattttatgtgacgaacaacaaaacctctaccagtagcatgatactttgca 36
>dbj|AK071856.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023122H24, full
insert sequence
Length = 1399
Score = 291 bits (147), Expect = 2e-076
Identities = 220/248 (88%)
Strand = Plus / Minus
Query: 43 gtctcaagaatacgtcctctgaatgtctggatatgcgcctgctcctcatcccaccaagat 102
||||| || ||||||||||| ||||||||||| || || |||||||||||||||||||||
Sbjct: 616 gtctctaggatacgtcctcttaatgtctggatgtgggcttgctcctcatcccaccaagat 557
Query: 103 tcccaactnnnnncaccctttacaccaactccacctttataaannnaccannntgtccag 162
||||| || | |||||||||||||||||||||||||||| |||| |||||||
Sbjct: 556 tcccagctgttttccccctttacaccaactccacctttataaagtaaccaatttgtccag 497
Query: 163 tcatcaaagtcctcaacagtcttttgccactcgaaaccagaagggttgaaaatgtaaggc 222
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 496 tcatcaaagtcctcaacagtcttttgccactcgaaaccagaagggttgaaaatgtatggt 437
Query: 223 gcgaaaagccaggacataacgaggaaccaactactgatagtaatcagaataaatgaagat 282
||||| |||||||||| ||||||||||||||||||||||| | |||||||| ||||||
Sbjct: 436 gcgaagagccaggacacgacgaggaaccaactactgatagttaatagaataaaggaagat 377
Query: 283 gaaccgcc 290
||||||||
Sbjct: 376 gaaccgcc 369
Score = 113 bits (57), Expect = 1e-022
Identities = 100/117 (85%)
Strand = Plus / Minus
Query: 322 aggaggagagcaacctcaagcgctttgacaaagtgacttnnagaatagagcctataattt 381
|||||||||||||| ||||||||||| |||||||| || ||||||||||| |||||||
Sbjct: 337 aggaggagagcaacttcaagcgctttcacaaagtgggttcgagaatagagccgataattt 278
Query: 382 tcagcaaacnttatgtgccnnacaacaaaacctctnnnagtagcacgatactttgca 438
|| ||||| ||||||| | |||||||||||||| ||||||| |||||||||||
Sbjct: 277 tcggcaaattttatgtgacgaacaacaaaacctctaccagtagcatgatactttgca 221
>ref|XM_550490.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 5316
Score = 291 bits (147), Expect = 2e-076
Identities = 220/248 (88%)
Strand = Plus / Minus
Query: 43 gtctcaagaatacgtcctctgaatgtctggatatgcgcctgctcctcatcccaccaagat 102
||||| || ||||||||||| ||||||||||| || || |||||||||||||||||||||
Sbjct: 4763 gtctctaggatacgtcctcttaatgtctggatgtgggcttgctcctcatcccaccaagat 4704
Query: 103 tcccaactnnnnncaccctttacaccaactccacctttataaannnaccannntgtccag 162
||||| || | |||||||||||||||||||||||||||| |||| |||||||
Sbjct: 4703 tcccagctgttttccccctttacaccaactccacctttataaagtaaccaatttgtccag 4644
Query: 163 tcatcaaagtcctcaacagtcttttgccactcgaaaccagaagggttgaaaatgtaaggc 222
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 4643 tcatcaaagtcctcaacagtcttttgccactcgaaaccagaagggttgaaaatgtatggt 4584
Query: 223 gcgaaaagccaggacataacgaggaaccaactactgatagtaatcagaataaatgaagat 282
||||| |||||||||| ||||||||||||||||||||||| | |||||||| ||||||
Sbjct: 4583 gcgaagagccaggacacgacgaggaaccaactactgatagttaatagaataaaggaagat 4524
Query: 283 gaaccgcc 290
||||||||
Sbjct: 4523 gaaccgcc 4516
Score = 121 bits (61), Expect = 5e-025
Identities = 101/117 (86%)
Strand = Plus / Minus
Query: 322 aggaggagagcaacctcaagcgctttgacaaagtgacttnnagaatagagcctataattt 381
|||||||||||||| ||||||||||| |||||||| ||| ||||||||||| |||||||
Sbjct: 4484 aggaggagagcaacttcaagcgctttcacaaagtggcttcgagaatagagccgataattt 4425
Query: 382 tcagcaaacnttatgtgccnnacaacaaaacctctnnnagtagcacgatactttgca 438
|| ||||| ||||||| | |||||||||||||| ||||||| |||||||||||
Sbjct: 4424 tcggcaaattttatgtgacgaacaacaaaacctctaccagtagcatgatactttgca 4368
>gb|AACV01012882.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg012882, whole
genome shotgun sequence
Length = 24683
Score = 143 bits (72), Expect = 1e-031
Identities = 99/108 (91%)
Strand = Plus / Minus
Query: 183 cttttgccactcgaaaccagaagggttgaaaatgtaaggcgcgaaaagccaggacataac 242
|||||||||||||||||||||||||||||||||||| || ||||| |||||||||| ||
Sbjct: 13820 cttttgccactcgaaaccagaagggttgaaaatgtatggtgcgaagagccaggacacgac 13761
Query: 243 gaggaaccaactactgatagtaatcagaataaatgaagatgaaccgcc 290
||||||||||||||||||||| | |||||||| ||||||||||||||
Sbjct: 13760 gaggaaccaactactgatagttaatagaataaaggaagatgaaccgcc 13713
Score = 121 bits (61), Expect = 5e-025
Identities = 89/102 (87%)
Strand = Plus / Minus
Query: 82 tgctcctcatcccaccaagattcccaactnnnnncaccctttacaccaactccaccttta 141
|||||||||||||||||||||||||| || | ||||||||||||||||||||||||
Sbjct: 14186 tgctcctcatcccaccaagattcccagctgttttccccctttacaccaactccaccttta 14127
Query: 142 taaannnaccannntgtccagtcatcaaagtcctcaacagtc 183
|||| |||| ||||||||||||||||||||||||||||
Sbjct: 14126 taaagtaaccaatttgtccagtcatcaaagtcctcaacagtc 14085
Score = 79.8 bits (40), Expect = 2e-012
Identities = 77/92 (83%)
Strand = Plus / Minus
Query: 342 cgctttgacaaagtgacttnnagaatagagcctataattttcagcaaacnttatgtgccn 401
|||||| |||||||| ||| ||||||||||| ||||||||| ||||| ||||||| |
Sbjct: 13198 cgctttcacaaagtggcttcgagaatagagccgataattttcggcaaattttatgtgacg 13139
Query: 402 nacaacaaaacctctnnnagtagcacgatact 433
|||||||||||||| ||||||| ||||||
Sbjct: 13138 aacaacaaaacctctaccagtagcatgatact 13107
Score = 42.1 bits (21), Expect = 0.36
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 43 gtctcaagaatacgtcctctgaatgtctggatatgcgcctg 83
||||| || ||||||||||| ||||||||||| || |||||
Sbjct: 14323 gtctctaggatacgtcctcttaatgtctggatgtgggcctg 14283
>dbj|AP001552.1| Oryza sativa (japonica cultivar-group) geneomic DNA, chromosome 6, PAC
clone:P0029D06
Length = 150120
Score = 143 bits (72), Expect = 1e-031
Identities = 99/108 (91%)
Strand = Plus / Plus
Query: 183 cttttgccactcgaaaccagaagggttgaaaatgtaaggcgcgaaaagccaggacataac 242
|||||||||||||||||||||||||||||||||||| || ||||| |||||||||| ||
Sbjct: 132533 cttttgccactcgaaaccagaagggttgaaaatgtatggtgcgaagagccaggacacgac 132592
Query: 243 gaggaaccaactactgatagtaatcagaataaatgaagatgaaccgcc 290
||||||||||||||||||||| | |||||||| ||||||||||||||
Sbjct: 132593 gaggaaccaactactgatagttaatagaataaaggaagatgaaccgcc 132640
Score = 121 bits (61), Expect = 5e-025
Identities = 89/102 (87%)
Strand = Plus / Plus
Query: 82 tgctcctcatcccaccaagattcccaactnnnnncaccctttacaccaactccaccttta 141
|||||||||||||||||||||||||| || | ||||||||||||||||||||||||
Sbjct: 132167 tgctcctcatcccaccaagattcccagctgttttccccctttacaccaactccaccttta 132226
Query: 142 taaannnaccannntgtccagtcatcaaagtcctcaacagtc 183
|||| |||| ||||||||||||||||||||||||||||
Sbjct: 132227 taaagtaaccaatttgtccagtcatcaaagtcctcaacagtc 132268
Score = 79.8 bits (40), Expect = 2e-012
Identities = 77/92 (83%)
Strand = Plus / Plus
Query: 342 cgctttgacaaagtgacttnnagaatagagcctataattttcagcaaacnttatgtgccn 401
|||||| |||||||| ||| ||||||||||| ||||||||| ||||| ||||||| |
Sbjct: 133155 cgctttcacaaagtggcttcgagaatagagccgataattttcggcaaattttatgtgacg 133214
Query: 402 nacaacaaaacctctnnnagtagcacgatact 433
|||||||||||||| ||||||| ||||||
Sbjct: 133215 aacaacaaaacctctaccagtagcatgatact 133246
Score = 42.1 bits (21), Expect = 0.36
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 43 gtctcaagaatacgtcctctgaatgtctggatatgcgcctg 83
||||| || ||||||||||| ||||||||||| || |||||
Sbjct: 132030 gtctctaggatacgtcctcttaatgtctggatgtgggcctg 132070
>dbj|AP001389.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0541H01
Length = 157519
Score = 143 bits (72), Expect = 1e-031
Identities = 99/108 (91%)
Strand = Plus / Plus
Query: 183 cttttgccactcgaaaccagaagggttgaaaatgtaaggcgcgaaaagccaggacataac 242
|||||||||||||||||||||||||||||||||||| || ||||| |||||||||| ||
Sbjct: 9239 cttttgccactcgaaaccagaagggttgaaaatgtatggtgcgaagagccaggacacgac 9298
Query: 243 gaggaaccaactactgatagtaatcagaataaatgaagatgaaccgcc 290
||||||||||||||||||||| | |||||||| ||||||||||||||
Sbjct: 9299 gaggaaccaactactgatagttaatagaataaaggaagatgaaccgcc 9346
Score = 121 bits (61), Expect = 5e-025
Identities = 89/102 (87%)
Strand = Plus / Plus
Query: 82 tgctcctcatcccaccaagattcccaactnnnnncaccctttacaccaactccaccttta 141
|||||||||||||||||||||||||| || | ||||||||||||||||||||||||
Sbjct: 8873 tgctcctcatcccaccaagattcccagctgttttccccctttacaccaactccaccttta 8932
Query: 142 taaannnaccannntgtccagtcatcaaagtcctcaacagtc 183
|||| |||| ||||||||||||||||||||||||||||
Sbjct: 8933 taaagtaaccaatttgtccagtcatcaaagtcctcaacagtc 8974
Score = 79.8 bits (40), Expect = 2e-012
Identities = 77/92 (83%)
Strand = Plus / Plus
Query: 342 cgctttgacaaagtgacttnnagaatagagcctataattttcagcaaacnttatgtgccn 401
|||||| |||||||| ||| ||||||||||| ||||||||| ||||| ||||||| |
Sbjct: 9861 cgctttcacaaagtggcttcgagaatagagccgataattttcggcaaattttatgtgacg 9920
Query: 402 nacaacaaaacctctnnnagtagcacgatact 433
|||||||||||||| ||||||| ||||||
Sbjct: 9921 aacaacaaaacctctaccagtagcatgatact 9952
Score = 42.1 bits (21), Expect = 0.36
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 43 gtctcaagaatacgtcctctgaatgtctggatatgcgcctg 83
||||| || ||||||||||| ||||||||||| || |||||
Sbjct: 8736 gtctctaggatacgtcctcttaatgtctggatgtgggcctg 8776
>ref|NT_107230.2| Oryza sativa (japonica cultivar-group)
Length = 2805126
Score = 143 bits (72), Expect = 1e-031
Identities = 99/108 (91%)
Strand = Plus / Plus
Query: 183 cttttgccactcgaaaccagaagggttgaaaatgtaaggcgcgaaaagccaggacataac 242
|||||||||||||||||||||||||||||||||||| || ||||| |||||||||| ||
Sbjct: 689682 cttttgccactcgaaaccagaagggttgaaaatgtatggtgcgaagagccaggacacgac 689741
Query: 243 gaggaaccaactactgatagtaatcagaataaatgaagatgaaccgcc 290
||||||||||||||||||||| | |||||||| ||||||||||||||
Sbjct: 689742 gaggaaccaactactgatagttaatagaataaaggaagatgaaccgcc 689789
Score = 121 bits (61), Expect = 5e-025
Identities = 89/102 (87%)
Strand = Plus / Plus
Query: 82 tgctcctcatcccaccaagattcccaactnnnnncaccctttacaccaactccaccttta 141
|||||||||||||||||||||||||| || | ||||||||||||||||||||||||
Sbjct: 689316 tgctcctcatcccaccaagattcccagctgttttccccctttacaccaactccaccttta 689375
Query: 142 taaannnaccannntgtccagtcatcaaagtcctcaacagtc 183
|||| |||| ||||||||||||||||||||||||||||
Sbjct: 689376 taaagtaaccaatttgtccagtcatcaaagtcctcaacagtc 689417
Score = 79.8 bits (40), Expect = 2e-012
Identities = 77/92 (83%)
Strand = Plus / Plus
Query: 342 cgctttgacaaagtgacttnnagaatagagcctataattttcagcaaacnttatgtgccn 401
|||||| |||||||| ||| ||||||||||| ||||||||| ||||| ||||||| |
Sbjct: 690304 cgctttcacaaagtggcttcgagaatagagccgataattttcggcaaattttatgtgacg 690363
Query: 402 nacaacaaaacctctnnnagtagcacgatact 433
|||||||||||||| ||||||| ||||||
Sbjct: 690364 aacaacaaaacctctaccagtagcatgatact 690395
Score = 42.1 bits (21), Expect = 0.36
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 43 gtctcaagaatacgtcctctgaatgtctggatatgcgcctg 83
||||| || ||||||||||| ||||||||||| || |||||
Sbjct: 689179 gtctctaggatacgtcctcttaatgtctggatgtgggcctg 689219
>gb|CH401209.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000046
genomic scaffold, whole genome shotgun sequence
Length = 8607552
Score = 143 bits (72), Expect = 1e-031
Identities = 99/108 (91%)
Strand = Plus / Plus
Query: 183 cttttgccactcgaaaccagaagggttgaaaatgtaaggcgcgaaaagccaggacataac 242
|||||||||||||||||||||||||||||||||||| || ||||| |||||||||| ||
Sbjct: 618501 cttttgccactcgaaaccagaagggttgaaaatgtatggtgcgaagagccaggacacgac 618560
Query: 243 gaggaaccaactactgatagtaatcagaataaatgaagatgaaccgcc 290
||||||||||||||||||||| | |||||||| ||||||||||||||
Sbjct: 618561 gaggaaccaactactgatagttaatagaataaaggaagatgaaccgcc 618608
Score = 121 bits (61), Expect = 5e-025
Identities = 89/102 (87%)
Strand = Plus / Plus
Query: 82 tgctcctcatcccaccaagattcccaactnnnnncaccctttacaccaactccaccttta 141
|||||||||||||||||||||||||| || | ||||||||||||||||||||||||
Sbjct: 618135 tgctcctcatcccaccaagattcccagctgttttccccctttacaccaactccaccttta 618194
Query: 142 taaannnaccannntgtccagtcatcaaagtcctcaacagtc 183
|||| |||| ||||||||||||||||||||||||||||
Sbjct: 618195 taaagtaaccaatttgtccagtcatcaaagtcctcaacagtc 618236
Score = 79.8 bits (40), Expect = 2e-012
Identities = 77/92 (83%)
Strand = Plus / Plus
Query: 342 cgctttgacaaagtgacttnnagaatagagcctataattttcagcaaacnttatgtgccn 401
|||||| |||||||| ||| ||||||||||| ||||||||| ||||| ||||||| |
Sbjct: 619123 cgctttcacaaagtggcttcgagaatagagccgataattttcggcaaattttatgtgacg 619182
Query: 402 nacaacaaaacctctnnnagtagcacgatact 433
|||||||||||||| ||||||| ||||||
Sbjct: 619183 aacaacaaaacctctaccagtagcatgatact 619214
Score = 42.1 bits (21), Expect = 0.36
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 43 gtctcaagaatacgtcctctgaatgtctggatatgcgcctg 83
||||| || ||||||||||| ||||||||||| || |||||
Sbjct: 617998 gtctctaggatacgtcctcttaatgtctggatgtgggcctg 618038
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 143 bits (72), Expect = 1e-031
Identities = 99/108 (91%)
Strand = Plus / Plus
Query: 183 cttttgccactcgaaaccagaagggttgaaaatgtaaggcgcgaaaagccaggacataac 242
|||||||||||||||||||||||||||||||||||| || ||||| |||||||||| ||
Sbjct: 618501 cttttgccactcgaaaccagaagggttgaaaatgtatggtgcgaagagccaggacacgac 618560
Query: 243 gaggaaccaactactgatagtaatcagaataaatgaagatgaaccgcc 290
||||||||||||||||||||| | |||||||| ||||||||||||||
Sbjct: 618561 gaggaaccaactactgatagttaatagaataaaggaagatgaaccgcc 618608
Score = 121 bits (61), Expect = 5e-025
Identities = 89/102 (87%)
Strand = Plus / Plus
Query: 82 tgctcctcatcccaccaagattcccaactnnnnncaccctttacaccaactccaccttta 141
|||||||||||||||||||||||||| || | ||||||||||||||||||||||||
Sbjct: 618135 tgctcctcatcccaccaagattcccagctgttttccccctttacaccaactccaccttta 618194
Query: 142 taaannnaccannntgtccagtcatcaaagtcctcaacagtc 183
|||| |||| ||||||||||||||||||||||||||||
Sbjct: 618195 taaagtaaccaatttgtccagtcatcaaagtcctcaacagtc 618236
Score = 79.8 bits (40), Expect = 2e-012
Identities = 77/92 (83%)
Strand = Plus / Plus
Query: 342 cgctttgacaaagtgacttnnagaatagagcctataattttcagcaaacnttatgtgccn 401
|||||| |||||||| ||| ||||||||||| ||||||||| ||||| ||||||| |
Sbjct: 619123 cgctttcacaaagtggcttcgagaatagagccgataattttcggcaaattttatgtgacg 619182
Query: 402 nacaacaaaacctctnnnagtagcacgatact 433
|||||||||||||| ||||||| ||||||
Sbjct: 619183 aacaacaaaacctctaccagtagcatgatact 619214
Score = 42.1 bits (21), Expect = 0.36
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 43 gtctcaagaatacgtcctctgaatgtctggatatgcgcctg 83
||||| || ||||||||||| ||||||||||| || |||||
Sbjct: 617998 gtctctaggatacgtcctcttaatgtctggatgtgggcctg 618038
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
complete sequence
Length = 30731886
Score = 143 bits (72), Expect = 1e-031
Identities = 99/108 (91%)
Strand = Plus / Plus
Query: 183 cttttgccactcgaaaccagaagggttgaaaatgtaaggcgcgaaaagccaggacataac 242
|||||||||||||||||||||||||||||||||||| || ||||| |||||||||| ||
Sbjct: 726105 cttttgccactcgaaaccagaagggttgaaaatgtatggtgcgaagagccaggacacgac 726164
Query: 243 gaggaaccaactactgatagtaatcagaataaatgaagatgaaccgcc 290
||||||||||||||||||||| | |||||||| ||||||||||||||
Sbjct: 726165 gaggaaccaactactgatagttaatagaataaaggaagatgaaccgcc 726212
Score = 121 bits (61), Expect = 5e-025
Identities = 89/102 (87%)
Strand = Plus / Plus
Query: 82 tgctcctcatcccaccaagattcccaactnnnnncaccctttacaccaactccaccttta 141
|||||||||||||||||||||||||| || | ||||||||||||||||||||||||
Sbjct: 725739 tgctcctcatcccaccaagattcccagctgttttccccctttacaccaactccaccttta 725798
Query: 142 taaannnaccannntgtccagtcatcaaagtcctcaacagtc 183
|||| |||| ||||||||||||||||||||||||||||
Sbjct: 725799 taaagtaaccaatttgtccagtcatcaaagtcctcaacagtc 725840
Score = 79.8 bits (40), Expect = 2e-012
Identities = 77/92 (83%)
Strand = Plus / Plus
Query: 342 cgctttgacaaagtgacttnnagaatagagcctataattttcagcaaacnttatgtgccn 401
|||||| |||||||| ||| ||||||||||| ||||||||| ||||| ||||||| |
Sbjct: 726727 cgctttcacaaagtggcttcgagaatagagccgataattttcggcaaattttatgtgacg 726786
Query: 402 nacaacaaaacctctnnnagtagcacgatact 433
|||||||||||||| ||||||| ||||||
Sbjct: 726787 aacaacaaaacctctaccagtagcatgatact 726818
Score = 42.1 bits (21), Expect = 0.36
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 43 gtctcaagaatacgtcctctgaatgtctggatatgcgcctg 83
||||| || ||||||||||| ||||||||||| || |||||
Sbjct: 725602 gtctctaggatacgtcctcttaatgtctggatgtgggcctg 725642
>gb|CB684140.1|CB684140 OSJNEf13F24.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf13F24 5', mRNA sequence
Length = 710
Score = 113 bits (57), Expect = 1e-022
Identities = 100/117 (85%)
Strand = Plus / Minus
Query: 322 aggaggagagcaacctcaagcgctttgacaaagtgacttnnagaatagagcctataattt 381
|||||||||||||| ||||||||||| |||||||| ||| ||||||||||| |||||||
Sbjct: 581 aggaggagagcaacttcaagcgctttcacaaagtggcttcgagaatagagccgataattt 522
Query: 382 tcagcaaacnttatgtgccnnacaacaaaacctctnnnagtagcacgatactttgca 438
|| ||||| ||||||| | |||||||||||| | ||||||| |||||||||||
Sbjct: 521 tcggcaaattttatgtgacgaacaacaaaacctgtaccagtagcatgatactttgca 465
Score = 75.8 bits (38), Expect = 3e-011
Identities = 83/98 (84%)
Strand = Plus / Minus
Query: 193 tcgaaaccagaagggttgaaaatgtaaggcgcgaaaagccaggacataacgaggaaccaa 252
|||| ||||||||||||||||||||| || | ||| || ||||||| | ||||||||||
Sbjct: 710 tcgagaccagaagggttgaaaatgtatggtgtgaagagacaggacacgatgaggaaccaa 651
Query: 253 ctactgatagtaatcagaataaatgaagatgaaccgcc 290
|||||||||| | |||||||| |||||||| |||||
Sbjct: 650 atactgatagttaatagaataaaggaagatgacccgcc 613
>gb|CB684141.1|CB684141 OSJNEf13F24.r OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf13F24 3', mRNA sequence
Length = 808
Score = 111 bits (56), Expect = 5e-022
Identities = 90/103 (87%)
Strand = Plus / Plus
Query: 43 gtctcaagaatacgtcctctgaatgtctggatatgcgcctgctcctcatcccaccaagat 102
||||| || ||||||||||| ||||||||||| || || |||||||||||||||||||||
Sbjct: 704 gtctctaggatacgtcctcttaatgtctggatgtgggcttgctcctcatcccaccaagat 763
Query: 103 tcccaactnnnnncaccctttacaccaactccacctttataaa 145
||||| || | ||||||||||||||||||||||||||||
Sbjct: 764 tcccagctgttttccccctttacaccaactccacctttataaa 806
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 462,267
Number of Sequences: 438736
Number of extensions: 462267
Number of successful extensions: 2063
Number of sequences better than 0.5: 12
Number of HSP's better than 0.5 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1973
Number of HSP's gapped (non-prelim): 79
length of query: 642
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 621
effective length of database: 2,791,206,460
effective search space: 1733339211660
effective search space used: 1733339211660
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)