BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAE20c02.yg.2.1
(696 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK059517.1| Oryza sativa (japonica cultivar-group) cDNA... 274 6e-071
dbj|AK105850.1| Oryza sativa (japonica cultivar-group) cDNA... 266 1e-068
dbj|AK120790.1| Oryza sativa (japonica cultivar-group) cDNA... 266 1e-068
ref|XM_469438.1| Oryza sativa (japonica cultivar-group), mRNA 266 1e-068
gb|CF312247.1|CF312247 ABF--07-N23.b1 ABF3-overexpressing t... 224 5e-056
gb|CB656093.1|CB656093 OSJNEc10A12.f OSJNEc Oryza sativa (j... 206 1e-050
gb|CF303247.1|CF303247 ABF1--01-L23.g1 ABF3-overexpressing ... 206 1e-050
gb|CF304361.1|CF304361 ABF1--04-M08.g1 ABF3-overexpressing ... 206 1e-050
gb|CF312911.1|CF312911 ABF--08-N15.b1 ABF3-overexpressing t... 206 1e-050
dbj|AK059920.1| Oryza sativa (japonica cultivar-group) cDNA... 206 1e-050
dbj|AK100165.1| Oryza sativa (japonica cultivar-group) cDNA... 206 1e-050
dbj|AK103027.1| Oryza sativa (japonica cultivar-group) cDNA... 206 1e-050
dbj|AK105026.2| Oryza sativa (japonica cultivar-group) cDNA... 206 1e-050
ref|XM_469436.1| Oryza sativa (japonica cultivar-group), mRNA 206 1e-050
gb|U28047.2|OSU28047 Oryza sativa beta-glucosidase mRNA, co... 198 3e-048
gb|AU032064.2|AU032064 AU032064 Rice root Oryza sativa (jap... 163 2e-037
gb|CA999001.1|CA999001 S234M_A05 Rice cold stress germinati... 157 1e-035
gb|CB000637.1|CB000637 S345Q_F09 Rice cold stress germinati... 157 1e-035
gb|C27840.1|C27840 C27840 Rice callus cDNA Oryza sativa (ja... 139 2e-030
gb|CA999930.1|CA999930 S234L_B03 Rice cold stress germinati... 127 9e-027
gb|CF303132.1|CF303132 ABF1--01-G22.g1 ABF3-overexpressing ... 125 3e-026
gb|CF322973.1|CF322973 HDN--02-J09.g1 OsHDAC1-overexpressin... 125 3e-026
gb|AC133334.8| Oryza sativa chromosome 3 BAC OSJNBa0004L11 ... 123 1e-025
gb|AACV01007734.1| Oryza sativa (japonica cultivar-group) c... 123 1e-025
ref|NT_079916.2| Oryza sativa (japonica cultivar-group) 123 1e-025
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 123 1e-025
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 123 1e-025
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 123 1e-025
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 123 1e-025
gb|AC091670.7| Oryza sativa (japonica cultivar-group) chrom... 123 1e-025
gb|D24663.1|D24663 RICR2336A Rice root Oryza sativa (japoni... 121 5e-025
gb|CF323484.1|CF323484 HDN--03-P15.g1 OsHDAC1-overexpressin... 96 3e-017
gb|CF322778.1|CF322778 HDN--02-A16.g1 OsHDAC1-overexpressin... 78 7e-012
gb|CF323923.1|CF323923 HDN--05-C04.g1 OsHDAC1-overexpressin... 78 7e-012
gb|CF324550.1|CF324550 HDN--06-N09.g1 OsHDAC1-overexpressin... 78 7e-012
gb|AU097444.1|AU097444 AU097444 Rice shoot Oryza sativa (ja... 74 1e-010
gb|D24959.1|D24959 RICR2847A Rice root Oryza sativa (japoni... 74 1e-010
gb|CB668311.1|CB668311 OSJNEd16B19.f OSJNEd Oryza sativa (j... 72 4e-010
gb|CB648777.1|CB648777 OSJNEb12F12.f OSJNEb Oryza sativa (j... 64 1e-007
gb|CB648778.1|CB648778 OSJNEb12F12.r OSJNEb Oryza sativa (j... 64 1e-007
gb|CF312197.1|CF312197 ABF--07-M20.b1 ABF3-overexpressing t... 64 1e-007
gb|CA998259.1|CA998259 S234E_C10 Rice cold stress germinati... 58 7e-006
gb|CA998261.1|CA998261 S234E_C12 Rice cold stress germinati... 58 7e-006
gb|D46605.1|D46605 RICS11375A Rice green shoot Oryza sativa... 48 0.006
gb|AU183651.1|AU183651 AU183651 Rice panicle shorter than 3... 48 0.006
gb|CB643189.1|CB643189 OSJNEb03L22.f OSJNEb Oryza sativa (j... 48 0.006
gb|CB643857.1|CB643857 OSJNEb04M14.f OSJNEb Oryza sativa (j... 48 0.006
gb|CB654045.1|CB654045 OSJNEc05K05.f OSJNEc Oryza sativa (j... 48 0.006
gb|CB663657.1|CB663657 OSJNEd08O07.f OSJNEd Oryza sativa (j... 48 0.006
gb|CB668191.1|CB668191 OSJNEd15O19.f OSJNEd Oryza sativa (j... 48 0.006
gb|CB674932.1|CB674932 OSJNEe10E15.f OSJNEe Oryza sativa (j... 48 0.006
gb|CF196154.1|CF196154 Azvi1.2_E12 AZ-VI Oryza sativa (japo... 48 0.006
gb|CF304479.1|CF304479 ABF1--05-B14.g1 ABF3-overexpressing ... 48 0.006
gb|CF323520.1|CF323520 HDN--04-B03.g1 OsHDAC1-overexpressin... 48 0.006
gb|C26022.2|C26022 C26022 Rice callus cDNA Oryza sativa (ja... 48 0.006
gb|BP185059.1|BP185059 BP185059 pNS rice panicle cDNA, flow... 48 0.006
dbj|AG021086.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.100
dbj|AB157529.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.100
dbj|AG213126.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.39
dbj|AG213128.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.39
dbj|AG213548.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.39
dbj|AG213723.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.39
dbj|AG213908.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.39
dbj|AG213976.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.39
dbj|AG024555.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.39
dbj|AG024570.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.39
dbj|AB156800.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.39
dbj|AB157563.2| Oryza sativa (japonica cultivar-group) DNA,... 42 0.39
gb|CF452785.1|CF452785 EST00001 Subtracted cDNA library of ... 42 0.39
>dbj|AK059517.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-C01, full
insert sequence
Length = 1336
Score = 274 bits (138), Expect = 6e-071
Identities = 311/369 (84%)
Strand = Plus / Minus
Query: 178 gttgatctgcaatgtagtatgtagtatattgattgatcccgaaatagtctgatgagccct 237
|||| ||||| ||||||| | |||||||||||||||||| ||||| |||| |||||||
Sbjct: 417 gttggtctgccatgtagttagcagtatattgattgatcccaaaataatctgcggagccct 358
Query: 238 tgactagcttggcctgttcaggtgtgaaacttggtagccggtctttcacaatgtcttgca 297
|||||||||| || |||||||| |||||| | |||| | ||||||||||| ||| |||
Sbjct: 357 tgactagcttagcttgttcaggcgtgaaagtaggtaatctttctttcacaatatctcgca 298
Query: 298 ttatctttggatattgcccatttattaatggatcaagaaaccaaccaatatggaagtccc 357
| | ||||||||||| ||||||||||| ||||||||||||||||||| ||||||||| |
Sbjct: 297 tattttttggatattgtccatttattaacggatcaagaaaccaaccaacatggaagtctc 238
Query: 358 tggccctttgcgctgctttttgatcttcagttgagtttgtaaaaggttcataccagttga 417
|||| ||||| |||||| ||| |||||||||||||| || | |||||||||||| || |
Sbjct: 237 tggctctttgagctgctgcttggtcttcagttgagttagttagaggttcataccaattaa 178
Query: 418 agtcaagaactatcccgaccttgcctttctgagttgcctggtatttattgcggtatcttg 477
| || |||||||| |||||||||||||||||| |||||||| | || || ||||||||
Sbjct: 177 aatcgagaactattccgaccttgcctttctgacttgcctggaacttgttacggtatctat 118
Query: 478 caactgcagtagcatgagataggagaatgttatgaacaacaatgtaaggttctgtcgatg 537
||||||||||||||||||||| || || |||||| ||||||| || || ||||| | ||
Sbjct: 117 caactgcagtagcatgagataagatgatattatgagcaacaatatatggctctgttgctg 58
Query: 538 agttcncac 546
||||| |||
Sbjct: 57 agttcccac 49
Score = 58.0 bits (29), Expect = 7e-006
Identities = 86/105 (81%)
Strand = Plus / Minus
Query: 18 tacttttcctttaggtagttcacgactccatacatgcccgatgggacgatgtaaagccaa 77
||||| ||||||| ||||||||| ||||||||||||| | || ||||| |||||||||
Sbjct: 577 tacttctcctttatgtagttcacagctccatacatgccagtcggaacgatataaagccaa 518
Query: 78 attgagtgcgccatctgtccaatttgcacgccattcctttgaaag 122
| |||| ||| |||||||||| | |||||||| | |||||||
Sbjct: 517 ttagagtttgcctgctgtccaattggtacgccatttcgttgaaag 473
>dbj|AK105850.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-203-G08, full
insert sequence
Length = 1387
Score = 266 bits (134), Expect = 1e-068
Identities = 310/369 (84%)
Strand = Plus / Minus
Query: 178 gttgatctgcaatgtagtatgtagtatattgattgatcccgaaatagtctgatgagccct 237
|||| ||||| ||||||| | |||||||||||||||||| ||||| |||| |||||||
Sbjct: 546 gttggtctgccatgtagttagcagtatattgattgatcccaaaataatctgcggagccct 487
Query: 238 tgactagcttggcctgttcaggtgtgaaacttggtagccggtctttcacaatgtcttgca 297
|||||||||| || |||||||| |||||| | |||| | ||||||||||| ||| |||
Sbjct: 486 tgactagcttagcttgttcaggcgtgaaagtaggtaatctttctttcacaatatctcgca 427
Query: 298 ttatctttggatattgcccatttattaatggatcaagaaaccaaccaatatggaagtccc 357
| | ||||||||||| ||||||||||| ||||||||||||||||||| ||||||||| |
Sbjct: 426 tattttttggatattgtccatttattaacggatcaagaaaccaaccaacatggaagtctc 367
Query: 358 tggccctttgcgctgctttttgatcttcagttgagtttgtaaaaggttcataccagttga 417
|||| ||||| |||||| ||| |||||||||||||| || | |||||||||||| || |
Sbjct: 366 tggctctttgagctgctgcttggtcttcagttgagttagttagaggttcataccaattaa 307
Query: 418 agtcaagaactatcccgaccttgcctttctgagttgcctggtatttattgcggtatcttg 477
| || |||||||| |||| ||||||||||||| |||||||| | || || ||||||||
Sbjct: 306 aatcgagaactattccgatcttgcctttctgacttgcctggaacttgttacggtatctat 247
Query: 478 caactgcagtagcatgagataggagaatgttatgaacaacaatgtaaggttctgtcgatg 537
||||||||||||||||||||| || || |||||| ||||||| || || ||||| | ||
Sbjct: 246 caactgcagtagcatgagataagatgatattatgagcaacaatatatggctctgttgctg 187
Query: 538 agttcncac 546
||||| |||
Sbjct: 186 agttcccac 178
Score = 58.0 bits (29), Expect = 7e-006
Identities = 86/105 (81%)
Strand = Plus / Minus
Query: 18 tacttttcctttaggtagttcacgactccatacatgcccgatgggacgatgtaaagccaa 77
||||| ||||||| ||||||||| ||||||||||||| | || ||||| |||||||||
Sbjct: 706 tacttctcctttatgtagttcacagctccatacatgccagtcggaacgatataaagccaa 647
Query: 78 attgagtgcgccatctgtccaatttgcacgccattcctttgaaag 122
| |||| ||| |||||||||| | |||||||| | |||||||
Sbjct: 646 ttagagtttgcctgctgtccaattggtacgccatttcgttgaaag 602
>dbj|AK120790.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023011K21, full
insert sequence
Length = 2082
Score = 266 bits (134), Expect = 1e-068
Identities = 310/369 (84%)
Strand = Plus / Minus
Query: 178 gttgatctgcaatgtagtatgtagtatattgattgatcccgaaatagtctgatgagccct 237
|||| ||||| ||||||| | |||||||||||||||||| ||||| |||| |||||||
Sbjct: 1163 gttggtctgccatgtagttagcagtatattgattgatcccaaaataatctgcggagccct 1104
Query: 238 tgactagcttggcctgttcaggtgtgaaacttggtagccggtctttcacaatgtcttgca 297
|||||||||| || |||||||| |||||| | |||| | ||||||||||| ||| |||
Sbjct: 1103 tgactagcttagcttgttcaggcgtgaaagtaggtaatctttctttcacaatatctcgca 1044
Query: 298 ttatctttggatattgcccatttattaatggatcaagaaaccaaccaatatggaagtccc 357
| | ||||||||||| ||||||||||| ||||||||||||||||||| ||||||||| |
Sbjct: 1043 tattttttggatattgtccatttattaacggatcaagaaaccaaccaacatggaagtctc 984
Query: 358 tggccctttgcgctgctttttgatcttcagttgagtttgtaaaaggttcataccagttga 417
|||| ||||| |||||| ||| |||||||||||||| || | |||||||||||| || |
Sbjct: 983 tggctctttgagctgctgcttggtcttcagttgagttagttagaggttcataccaattaa 924
Query: 418 agtcaagaactatcccgaccttgcctttctgagttgcctggtatttattgcggtatcttg 477
| || |||||||| |||| ||||||||||||| |||||||| | || || ||||||||
Sbjct: 923 aatcgagaactattccgatcttgcctttctgacttgcctggaacttgttacggtatctat 864
Query: 478 caactgcagtagcatgagataggagaatgttatgaacaacaatgtaaggttctgtcgatg 537
||||||||||||||||||||| || || |||||| ||||||| || || ||||| | ||
Sbjct: 863 caactgcagtagcatgagataagatgatattatgagcaacaatatatggctctgttgctg 804
Query: 538 agttcncac 546
||||| |||
Sbjct: 803 agttcccac 795
Score = 58.0 bits (29), Expect = 7e-006
Identities = 86/105 (81%)
Strand = Plus / Minus
Query: 18 tacttttcctttaggtagttcacgactccatacatgcccgatgggacgatgtaaagccaa 77
||||| ||||||| ||||||||| ||||||||||||| | || ||||| |||||||||
Sbjct: 1323 tacttctcctttatgtagttcacagctccatacatgccagtcggaacgatataaagccaa 1264
Query: 78 attgagtgcgccatctgtccaatttgcacgccattcctttgaaag 122
| |||| ||| |||||||||| | |||||||| | |||||||
Sbjct: 1263 ttagagtttgcctgctgtccaattggtacgccatttcgttgaaag 1219
>ref|XM_469438.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2080
Score = 266 bits (134), Expect = 1e-068
Identities = 310/369 (84%)
Strand = Plus / Minus
Query: 178 gttgatctgcaatgtagtatgtagtatattgattgatcccgaaatagtctgatgagccct 237
|||| ||||| ||||||| | |||||||||||||||||| ||||| |||| |||||||
Sbjct: 1161 gttggtctgccatgtagttagcagtatattgattgatcccaaaataatctgcggagccct 1102
Query: 238 tgactagcttggcctgttcaggtgtgaaacttggtagccggtctttcacaatgtcttgca 297
|||||||||| || |||||||| |||||| | |||| | ||||||||||| ||| |||
Sbjct: 1101 tgactagcttagcttgttcaggcgtgaaagtaggtaatctttctttcacaatatctcgca 1042
Query: 298 ttatctttggatattgcccatttattaatggatcaagaaaccaaccaatatggaagtccc 357
| | ||||||||||| ||||||||||| ||||||||||||||||||| ||||||||| |
Sbjct: 1041 tattttttggatattgtccatttattaacggatcaagaaaccaaccaacatggaagtctc 982
Query: 358 tggccctttgcgctgctttttgatcttcagttgagtttgtaaaaggttcataccagttga 417
|||| ||||| |||||| ||| |||||||||||||| || | |||||||||||| || |
Sbjct: 981 tggctctttgagctgctgcttggtcttcagttgagttagttagaggttcataccaattaa 922
Query: 418 agtcaagaactatcccgaccttgcctttctgagttgcctggtatttattgcggtatcttg 477
| || |||||||| |||| ||||||||||||| |||||||| | || || ||||||||
Sbjct: 921 aatcgagaactattccgatcttgcctttctgacttgcctggaacttgttacggtatctat 862
Query: 478 caactgcagtagcatgagataggagaatgttatgaacaacaatgtaaggttctgtcgatg 537
||||||||||||||||||||| || || |||||| ||||||| || || ||||| | ||
Sbjct: 861 caactgcagtagcatgagataagatgatattatgagcaacaatatatggctctgttgctg 802
Query: 538 agttcncac 546
||||| |||
Sbjct: 801 agttcccac 793
Score = 58.0 bits (29), Expect = 7e-006
Identities = 86/105 (81%)
Strand = Plus / Minus
Query: 18 tacttttcctttaggtagttcacgactccatacatgcccgatgggacgatgtaaagccaa 77
||||| ||||||| ||||||||| ||||||||||||| | || ||||| |||||||||
Sbjct: 1321 tacttctcctttatgtagttcacagctccatacatgccagtcggaacgatataaagccaa 1262
Query: 78 attgagtgcgccatctgtccaatttgcacgccattcctttgaaag 122
| |||| ||| |||||||||| | |||||||| | |||||||
Sbjct: 1261 ttagagtttgcctgctgtccaattggtacgccatttcgttgaaag 1217
>gb|CF312247.1|CF312247 ABF--07-N23.b1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--07-N23, mRNA sequence
Length = 589
Score = 224 bits (113), Expect = 5e-056
Identities = 239/281 (85%)
Strand = Plus / Minus
Query: 178 gttgatctgcaatgtagtatgtagtatattgattgatcccgaaatagtctgatgagccct 237
|||| ||||| ||||||| | |||||||||||||||||| ||||| |||| |||||||
Sbjct: 285 gttggtctgccatgtagttagcagtatattgattgatcccaaaataatctgcggagccct 226
Query: 238 tgactagcttggcctgttcaggtgtgaaacttggtagccggtctttcacaatgtcttgca 297
|||||||||| || |||||||| |||||| | |||| | ||||||||||| ||| |||
Sbjct: 225 tgactagcttagcttgttcaggcgtgaaagtaggtaatctttctttcacaatatctcgca 166
Query: 298 ttatctttggatattgcccatttattaatggatcaagaaaccaaccaatatggaagtccc 357
| | ||||||||||| ||||||||||| ||||||||||||||||||| ||||||||| |
Sbjct: 165 tattttttggatattgtccatttattaacggatcaagaaaccaaccaacatggaagtctc 106
Query: 358 tggccctttgcgctgctttttgatcttcagttgagtttgtaaaaggttcataccagttga 417
|||| ||||| |||||| ||| |||||||||||||| || | |||||||||||| || |
Sbjct: 105 tggctctttgagctgctgcttggtcttcagttgagttagttagaggttcataccaattaa 46
Query: 418 agtcaagaactatcccgaccttgcctttctgagttgcctgg 458
| || |||||||| |||| ||||||||||||| ||||||||
Sbjct: 45 aatcgagaactattccgatcttgcctttctgacttgcctgg 5
Score = 58.0 bits (29), Expect = 7e-006
Identities = 86/105 (81%)
Strand = Plus / Minus
Query: 18 tacttttcctttaggtagttcacgactccatacatgcccgatgggacgatgtaaagccaa 77
||||| ||||||| ||||||||| ||||||||||||| | || ||||| |||||||||
Sbjct: 445 tacttctcctttatgtagttcacagctccatacatgccagtcggaacgatataaagccaa 386
Query: 78 attgagtgcgccatctgtccaatttgcacgccattcctttgaaag 122
| |||| ||| |||||||||| | |||||||| | |||||||
Sbjct: 385 ttagagtttgcctgctgtccaattggtacgccatttcgttgaaag 341
>gb|CB656093.1|CB656093 OSJNEc10A12.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc10A12 5', mRNA sequence
Length = 796
Score = 206 bits (104), Expect = 1e-050
Identities = 242/289 (83%)
Strand = Plus / Minus
Query: 279 tctttcacaatgtcttgcattatctttggatattgcccatttattaatggatcaagaaac 338
|||||||||| ||||||||||||| || || || |||||||| |||||||||||| ||
Sbjct: 289 tctttcacaagatcttgcattatctgcgggtaatgtccatttatcaatggatcaagatac 230
Query: 339 caaccaatatggaagtccctggccctttgcgctgctttttgatcttcagttgagtttgta 398
|||||||| |||||||||||||| ||||| || ||| ||| |||||||||||||| | |
Sbjct: 229 caaccaatgtggaagtccctggctctttgagccgctgcttggtcttcagttgagttggaa 170
Query: 399 aaaggttcataccagttgaagtcaagaactatcccgaccttgcctttctgagttgcctgg 458
| || ||||||||| |||||||| |||||||| || || ||||||| ||||| ||||||
Sbjct: 169 agagcttcataccaattgaagtccagaactattccaactttgccttgctgagctgcctga 110
Query: 459 tatttattgcggtatcttgcaactgcagtagcatgagataggagaatgttatgaacaaca 518
|| ||| | |||||||||||||| || | |||||| |||| ||||| |||||| |||||
Sbjct: 109 tacttagtccggtatcttgcaacagctgcagcatgtgataagagaaaattatgagcaaca 50
Query: 519 atgtaaggttctgtcgatgagttcncacnngcagtgcattgtgtgcacc 567
||||| |||||||| | ||||||| ||| |||| ||||| ||||||||
Sbjct: 49 atgtatggttctgttgctgagttcccaccagcagggcattttgtgcacc 1
>gb|CF303247.1|CF303247 ABF1--01-L23.g1 ABF3-overexpressing transgenic rice lambda phage
cDNA library (ABF1) Oryza sativa (japonica
cultivar-group) cDNA clone ABF1--01-L23, mRNA sequence
Length = 740
Score = 206 bits (104), Expect = 1e-050
Identities = 242/289 (83%)
Strand = Plus / Minus
Query: 279 tctttcacaatgtcttgcattatctttggatattgcccatttattaatggatcaagaaac 338
|||||||||| ||||||||||||| || || || |||||||| |||||||||||| ||
Sbjct: 718 tctttcacaagatcttgcattatctgcgggtaatgtccatttatcaatggatcaagatac 659
Query: 339 caaccaatatggaagtccctggccctttgcgctgctttttgatcttcagttgagtttgta 398
|||||||| |||||||||||||| ||||| || ||| ||| |||||||||||||| | |
Sbjct: 658 caaccaatgtggaagtccctggctctttgagccgctgcttggtcttcagttgagttggaa 599
Query: 399 aaaggttcataccagttgaagtcaagaactatcccgaccttgcctttctgagttgcctgg 458
| || ||||||||| |||||||| |||||||| || || ||||||| ||||| ||||||
Sbjct: 598 agagcttcataccaattgaagtccagaactattccaactttgccttgctgagctgcctga 539
Query: 459 tatttattgcggtatcttgcaactgcagtagcatgagataggagaatgttatgaacaaca 518
|| ||| | |||||||||||||| || | |||||| |||| ||||| |||||| |||||
Sbjct: 538 tacttagtccggtatcttgcaacagctgcagcatgtgataagagaaaattatgagcaaca 479
Query: 519 atgtaaggttctgtcgatgagttcncacnngcagtgcattgtgtgcacc 567
||||| |||||||| | ||||||| ||| |||| ||||| ||||||||
Sbjct: 478 atgtatggttctgttgctgagttcccaccagcagcgcattttgtgcacc 430
Score = 48.1 bits (24), Expect = 0.006
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 591 tcataaccaannaatgctactatccttggctcat 624
|||||||||| | ||||||||||||||||||||
Sbjct: 406 tcataaccaagaagtgctactatccttggctcat 373
>gb|CF304361.1|CF304361 ABF1--04-M08.g1 ABF3-overexpressing transgenic rice lambda phage
cDNA library (ABF1) Oryza sativa (japonica
cultivar-group) cDNA clone ABF1--04-M08, mRNA sequence
Length = 587
Score = 206 bits (104), Expect = 1e-050
Identities = 242/289 (83%)
Strand = Plus / Minus
Query: 279 tctttcacaatgtcttgcattatctttggatattgcccatttattaatggatcaagaaac 338
|||||||||| ||||||||||||| || || || |||||||| |||||||||||| ||
Sbjct: 381 tctttcacaagatcttgcattatctgcgggtaatgtccatttatcaatggatcaagatac 322
Query: 339 caaccaatatggaagtccctggccctttgcgctgctttttgatcttcagttgagtttgta 398
|||||||| |||||||||||||| ||||| || ||| ||| |||||||||||||| | |
Sbjct: 321 caaccaatgtggaagtccctggctctttgagccgctgcttggtcttcagttgagttggaa 262
Query: 399 aaaggttcataccagttgaagtcaagaactatcccgaccttgcctttctgagttgcctgg 458
| || ||||||||| |||||||| |||||||| || || ||||||| ||||| ||||||
Sbjct: 261 agagcttcataccaattgaagtccagaactattccaactttgccttgctgagctgcctga 202
Query: 459 tatttattgcggtatcttgcaactgcagtagcatgagataggagaatgttatgaacaaca 518
|| ||| | |||||||||||||| || | |||||| |||| ||||| |||||| |||||
Sbjct: 201 tacttagtccggtatcttgcaacagctgcagcatgtgataagagaaaattatgagcaaca 142
Query: 519 atgtaaggttctgtcgatgagttcncacnngcagtgcattgtgtgcacc 567
||||| |||||||| | ||||||| ||| |||| ||||| ||||||||
Sbjct: 141 atgtatggttctgttgctgagttcccaccagcagcgcattttgtgcacc 93
Score = 48.1 bits (24), Expect = 0.006
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 591 tcataaccaannaatgctactatccttggctcat 624
|||||||||| | ||||||||||||||||||||
Sbjct: 69 tcataaccaagaagtgctactatccttggctcat 36
>gb|CF312911.1|CF312911 ABF--08-N15.b1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--08-N15, mRNA sequence
Length = 519
Score = 206 bits (104), Expect = 1e-050
Identities = 242/289 (83%)
Strand = Plus / Minus
Query: 279 tctttcacaatgtcttgcattatctttggatattgcccatttattaatggatcaagaaac 338
|||||||||| ||||||||||||| || || || |||||||| |||||||||||| ||
Sbjct: 386 tctttcacaagatcttgcattatctgcgggtaatgtccatttatcaatggatcaagatac 327
Query: 339 caaccaatatggaagtccctggccctttgcgctgctttttgatcttcagttgagtttgta 398
|||||||| |||||||||||||| ||||| || ||| ||| |||||||||||||| | |
Sbjct: 326 caaccaatgtggaagtccctggctctttgagccgctgcttggtcttcagttgagttggaa 267
Query: 399 aaaggttcataccagttgaagtcaagaactatcccgaccttgcctttctgagttgcctgg 458
| || ||||||||| |||||||| |||||||| || || ||||||| ||||| ||||||
Sbjct: 266 agagcttcataccaattgaagtccagaactattccaactttgccttgctgagctgcctga 207
Query: 459 tatttattgcggtatcttgcaactgcagtagcatgagataggagaatgttatgaacaaca 518
|| ||| | |||||||||||||| || | |||||| |||| ||||| |||||| |||||
Sbjct: 206 tacttagtccggtatcttgcaacagctgcagcatgtgataagagaaaattatgagcaaca 147
Query: 519 atgtaaggttctgtcgatgagttcncacnngcagtgcattgtgtgcacc 567
||||| |||||||| | ||||||| ||| |||| ||||| ||||||||
Sbjct: 146 atgtatggttctgttgctgagttcccaccagcagcgcattttgtgcacc 98
Score = 48.1 bits (24), Expect = 0.006
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 591 tcataaccaannaatgctactatccttggctcat 624
|||||||||| | ||||||||||||||||||||
Sbjct: 74 tcataaccaagaagtgctactatccttggctcat 41
>dbj|AK059920.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-209-G08, full
insert sequence
Length = 1302
Score = 206 bits (104), Expect = 1e-050
Identities = 242/289 (83%)
Strand = Plus / Minus
Query: 279 tctttcacaatgtcttgcattatctttggatattgcccatttattaatggatcaagaaac 338
|||||||||| ||||||||||||| || || || |||||||| |||||||||||| ||
Sbjct: 492 tctttcacaagatcttgcattatctgcgggtaatgtccatttatcaatggatcaagatac 433
Query: 339 caaccaatatggaagtccctggccctttgcgctgctttttgatcttcagttgagtttgta 398
|||||||| |||||||||||||| ||||| || ||| ||| |||||||||||||| | |
Sbjct: 432 caaccaatgtggaagtccctggctctttgagccgctgcttggtcttcagttgagttggaa 373
Query: 399 aaaggttcataccagttgaagtcaagaactatcccgaccttgcctttctgagttgcctgg 458
| || ||||||||| |||||||| |||||||| || || ||||||| ||||| ||||||
Sbjct: 372 agagcttcataccaattgaagtccagaactattccaactttgccttgctgagctgcctga 313
Query: 459 tatttattgcggtatcttgcaactgcagtagcatgagataggagaatgttatgaacaaca 518
|| ||| | |||||||||||||| || | |||||| |||| ||||| |||||| |||||
Sbjct: 312 tacttagtccggtatcttgcaacagctgcagcatgtgataagagaaaattatgagcaaca 253
Query: 519 atgtaaggttctgtcgatgagttcncacnngcagtgcattgtgtgcacc 567
||||| |||||||| | ||||||| ||| |||| ||||| ||||||||
Sbjct: 252 atgtatggttctgttgctgagttcccaccagcagcgcattttgtgcacc 204
Score = 48.1 bits (24), Expect = 0.006
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 591 tcataaccaannaatgctactatccttggctcat 624
|||||||||| | ||||||||||||||||||||
Sbjct: 180 tcataaccaagaagtgctactatccttggctcat 147
>dbj|AK100165.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023021K07, full
insert sequence
Length = 1894
Score = 206 bits (104), Expect = 1e-050
Identities = 242/289 (83%)
Strand = Plus / Minus
Query: 279 tctttcacaatgtcttgcattatctttggatattgcccatttattaatggatcaagaaac 338
|||||||||| ||||||||||||| || || || |||||||| |||||||||||| ||
Sbjct: 1051 tctttcacaagatcttgcattatctgcgggtaatgtccatttatcaatggatcaagatac 992
Query: 339 caaccaatatggaagtccctggccctttgcgctgctttttgatcttcagttgagtttgta 398
|||||||| |||||||||||||| ||||| || ||| ||| |||||||||||||| | |
Sbjct: 991 caaccaatgtggaagtccctggctctttgagccgctgcttggtcttcagttgagttggaa 932
Query: 399 aaaggttcataccagttgaagtcaagaactatcccgaccttgcctttctgagttgcctgg 458
| || ||||||||| |||||||| |||||||| || || ||||||| ||||| ||||||
Sbjct: 931 agagcttcataccaattgaagtccagaactattccaactttgccttgctgagctgcctga 872
Query: 459 tatttattgcggtatcttgcaactgcagtagcatgagataggagaatgttatgaacaaca 518
|| ||| | |||||||||||||| || | |||||| |||| ||||| |||||| |||||
Sbjct: 871 tacttagtccggtatcttgcaacagctgcagcatgtgataagagaaaattatgagcaaca 812
Query: 519 atgtaaggttctgtcgatgagttcncacnngcagtgcattgtgtgcacc 567
||||| |||||||| | ||||||| ||| |||| ||||| ||||||||
Sbjct: 811 atgtatggttctgttgctgagttcccaccagcagcgcattttgtgcacc 763
Score = 48.1 bits (24), Expect = 0.006
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 591 tcataaccaannaatgctactatccttggctcat 624
|||||||||| | ||||||||||||||||||||
Sbjct: 739 tcataaccaagaagtgctactatccttggctcat 706
>dbj|AK103027.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033117C01, full
insert sequence
Length = 1857
Score = 206 bits (104), Expect = 1e-050
Identities = 242/289 (83%)
Strand = Plus / Minus
Query: 279 tctttcacaatgtcttgcattatctttggatattgcccatttattaatggatcaagaaac 338
|||||||||| ||||||||||||| || || || |||||||| |||||||||||| ||
Sbjct: 1047 tctttcacaagatcttgcattatctgcgggtaatgtccatttatcaatggatcaagatac 988
Query: 339 caaccaatatggaagtccctggccctttgcgctgctttttgatcttcagttgagtttgta 398
|||||||| |||||||||||||| ||||| || ||| ||| |||||||||||||| | |
Sbjct: 987 caaccaatgtggaagtccctggctctttgagccgctgcttggtcttcagttgagttggaa 928
Query: 399 aaaggttcataccagttgaagtcaagaactatcccgaccttgcctttctgagttgcctgg 458
| || ||||||||| |||||||| |||||||| || || ||||||| ||||| ||||||
Sbjct: 927 agagcttcataccaattgaagtccagaactattccaactttgccttgctgagctgcctga 868
Query: 459 tatttattgcggtatcttgcaactgcagtagcatgagataggagaatgttatgaacaaca 518
|| ||| | |||||||||||||| || | |||||| |||| ||||| |||||| |||||
Sbjct: 867 tacttagtccggtatcttgcaacagctgcagcatgtgataagagaaaattatgagcaaca 808
Query: 519 atgtaaggttctgtcgatgagttcncacnngcagtgcattgtgtgcacc 567
||||| |||||||| | ||||||| ||| |||| ||||| ||||||||
Sbjct: 807 atgtatggttctgttgctgagttcccaccagcagcgcattttgtgcacc 759
Score = 48.1 bits (24), Expect = 0.006
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 591 tcataaccaannaatgctactatccttggctcat 624
|||||||||| | ||||||||||||||||||||
Sbjct: 735 tcataaccaagaagtgctactatccttggctcat 702
>dbj|AK105026.2| Oryza sativa (japonica cultivar-group) cDNA clone:001-011-H02, full
insert sequence
Length = 1846
Score = 206 bits (104), Expect = 1e-050
Identities = 242/289 (83%)
Strand = Plus / Minus
Query: 279 tctttcacaatgtcttgcattatctttggatattgcccatttattaatggatcaagaaac 338
|||||||||| ||||||||||||| || || || |||||||| |||||||||||| ||
Sbjct: 1048 tctttcacaagatcttgcattatctgcgggtaatgtccatttatcaatggatcaagatac 989
Query: 339 caaccaatatggaagtccctggccctttgcgctgctttttgatcttcagttgagtttgta 398
|||||||| |||||||||||||| ||||| || ||| ||| |||||||||||||| | |
Sbjct: 988 caaccaatgtggaagtccctggctctttgagccgctgcttggtcttcagttgagttggaa 929
Query: 399 aaaggttcataccagttgaagtcaagaactatcccgaccttgcctttctgagttgcctgg 458
| || ||||||||| |||||||| |||||||| || || ||||||| ||||| ||||||
Sbjct: 928 agagcttcataccaattgaagtccagaactattccaactttgccttgctgagctgcctga 869
Query: 459 tatttattgcggtatcttgcaactgcagtagcatgagataggagaatgttatgaacaaca 518
|| ||| | |||||||||||||| || | |||||| |||| ||||| |||||| |||||
Sbjct: 868 tacttagtccggtatcttgcaacagctgcagcatgtgataagagaaaattatgagcaaca 809
Query: 519 atgtaaggttctgtcgatgagttcncacnngcagtgcattgtgtgcacc 567
||||| |||||||| | ||||||| ||| |||| ||||| ||||||||
Sbjct: 808 atgtatggttctgttgctgagttcccaccagcagcgcattttgtgcacc 760
Score = 48.1 bits (24), Expect = 0.006
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 591 tcataaccaannaatgctactatccttggctcat 624
|||||||||| | ||||||||||||||||||||
Sbjct: 736 tcataaccaagaagtgctactatccttggctcat 703
>ref|XM_469436.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1849
Score = 206 bits (104), Expect = 1e-050
Identities = 242/289 (83%)
Strand = Plus / Minus
Query: 279 tctttcacaatgtcttgcattatctttggatattgcccatttattaatggatcaagaaac 338
|||||||||| ||||||||||||| || || || |||||||| |||||||||||| ||
Sbjct: 1045 tctttcacaagatcttgcattatctgcgggtaatgtccatttatcaatggatcaagatac 986
Query: 339 caaccaatatggaagtccctggccctttgcgctgctttttgatcttcagttgagtttgta 398
|||||||| |||||||||||||| ||||| || ||| ||| |||||||||||||| | |
Sbjct: 985 caaccaatgtggaagtccctggctctttgagccgctgcttggtcttcagttgagttggaa 926
Query: 399 aaaggttcataccagttgaagtcaagaactatcccgaccttgcctttctgagttgcctgg 458
| || ||||||||| |||||||| |||||||| || || ||||||| ||||| ||||||
Sbjct: 925 agagcttcataccaattgaagtccagaactattccaactttgccttgctgagctgcctga 866
Query: 459 tatttattgcggtatcttgcaactgcagtagcatgagataggagaatgttatgaacaaca 518
|| ||| | |||||||||||||| || | |||||| |||| ||||| |||||| |||||
Sbjct: 865 tacttagtccggtatcttgcaacagctgcagcatgtgataagagaaaattatgagcaaca 806
Query: 519 atgtaaggttctgtcgatgagttcncacnngcagtgcattgtgtgcacc 567
||||| |||||||| | ||||||| ||| |||| ||||| ||||||||
Sbjct: 805 atgtatggttctgttgctgagttcccaccagcagcgcattttgtgcacc 757
Score = 48.1 bits (24), Expect = 0.006
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 591 tcataaccaannaatgctactatccttggctcat 624
|||||||||| | ||||||||||||||||||||
Sbjct: 733 tcataaccaagaagtgctactatccttggctcat 700
>gb|U28047.2|OSU28047 Oryza sativa beta-glucosidase mRNA, complete cds
Length = 1909
Score = 198 bits (100), Expect = 3e-048
Identities = 241/289 (83%)
Strand = Plus / Minus
Query: 279 tctttcacaatgtcttgcattatctttggatattgcccatttattaatggatcaagaaac 338
|||||||||| ||||||||||||| | || || |||||||| |||||||||||| ||
Sbjct: 1056 tctttcacaagatcttgcattatctgcgagtaatgtccatttatcaatggatcaagatac 997
Query: 339 caaccaatatggaagtccctggccctttgcgctgctttttgatcttcagttgagtttgta 398
|||||||| |||||||||||||| ||||| || ||| ||| |||||||||||||| | |
Sbjct: 996 caaccaatgtggaagtccctggctctttgagccgctgcttggtcttcagttgagttggaa 937
Query: 399 aaaggttcataccagttgaagtcaagaactatcccgaccttgcctttctgagttgcctgg 458
| || ||||||||| |||||||| |||||||| || || ||||||| ||||| ||||||
Sbjct: 936 agagcttcataccaattgaagtccagaactattccaactttgccttgctgagctgcctga 877
Query: 459 tatttattgcggtatcttgcaactgcagtagcatgagataggagaatgttatgaacaaca 518
|| ||| | |||||||||||||| || | |||||| |||| ||||| |||||| |||||
Sbjct: 876 tacttagtccggtatcttgcaacagctgcagcatgtgataagagaaaattatgagcaaca 817
Query: 519 atgtaaggttctgtcgatgagttcncacnngcagtgcattgtgtgcacc 567
||||| |||||||| | ||||||| ||| |||| ||||| ||||||||
Sbjct: 816 atgtatggttctgttgctgagttcccaccagcagcgcattttgtgcacc 768
Score = 48.1 bits (24), Expect = 0.006
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 591 tcataaccaannaatgctactatccttggctcat 624
|||||||||| | ||||||||||||||||||||
Sbjct: 744 tcataaccaagaagtgctactatccttggctcat 711
>gb|AU032064.2|AU032064 AU032064 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R3421_1A, mRNA sequence
Length = 368
Score = 163 bits (82), Expect = 2e-037
Identities = 190/226 (84%)
Strand = Plus / Minus
Query: 279 tctttcacaatgtcttgcattatctttggatattgcccatttattaatggatcaagaaac 338
|||||||||| ||||||||||||| || || || |||||||| |||||||||||| ||
Sbjct: 233 tctttcacaagatcttgcattatctgcgggtaatgtccatttatcaatggatcaagatac 174
Query: 339 caaccaatatggaagtccctggccctttgcgctgctttttgatcttcagttgagtttgta 398
|||||||| |||||||||||||| ||||| || ||| ||| |||||||||||||| | |
Sbjct: 173 caaccaatgtggaagtccctggctctttgagccgctgcttggtcttcagttgagttggaa 114
Query: 399 aaaggttcataccagttgaagtcaagaactatcccgaccttgcctttctgagttgcctgg 458
| || ||||||||| |||||||| |||||||| || || ||||||| ||||| ||||||
Sbjct: 113 agagcttcataccaattgaagtccagaactattccaactttgccttgctgagctgcctga 54
Query: 459 tatttattgcggtatcttgcaactgcagtagcatgagataggagaa 504
|| ||| | |||||||||||||| || | |||||| |||| |||||
Sbjct: 53 tacttagtccggtatcttgcaacagctgcagcatgtgataagagaa 8
>gb|CA999001.1|CA999001 S234M_A05 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 667
Score = 157 bits (79), Expect = 1e-035
Identities = 172/203 (84%)
Strand = Plus / Minus
Query: 279 tctttcacaatgtcttgcattatctttggatattgcccatttattaatggatcaagaaac 338
|||||||||| ||||||||||||| || || || |||||||| |||||||||||| ||
Sbjct: 210 tctttcacaagatcttgcattatctgcgggtaatgtccatttatcaatggatcaagatac 151
Query: 339 caaccaatatggaagtccctggccctttgcgctgctttttgatcttcagttgagtttgta 398
|||||||| |||||||||||||| ||||| || ||| ||| |||||||||||||| | |
Sbjct: 150 caaccaatgtggaagtccctggctctttgagccgctgcttggtcttcagttgagttggaa 91
Query: 399 aaaggttcataccagttgaagtcaagaactatcccgaccttgcctttctgagttgcctgg 458
| || ||||||||| |||||||| |||||||| || || ||||||| ||||| ||||||
Sbjct: 90 agagcttcataccaattgaagtccagaactattccaactttgccttgctgagctgcctga 31
Query: 459 tatttattgcggtatcttgcaac 481
|| ||| | ||||||||||||||
Sbjct: 30 tacttagtccggtatcttgcaac 8
>gb|CB000637.1|CB000637 S345Q_F09 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 668
Score = 157 bits (79), Expect = 1e-035
Identities = 172/203 (84%)
Strand = Plus / Minus
Query: 279 tctttcacaatgtcttgcattatctttggatattgcccatttattaatggatcaagaaac 338
|||||||||| ||||||||||||| || || || |||||||| |||||||||||| ||
Sbjct: 210 tctttcacaagatcttgcattatctgcgggtaatgtccatttatcaatggatcaagatac 151
Query: 339 caaccaatatggaagtccctggccctttgcgctgctttttgatcttcagttgagtttgta 398
|||||||| |||||||||||||| ||||| || ||| ||| |||||||||||||| | |
Sbjct: 150 caaccaatgtggaagtccctggctctttgagccgctgcttggtcttcagttgagttggaa 91
Query: 399 aaaggttcataccagttgaagtcaagaactatcccgaccttgcctttctgagttgcctgg 458
| || ||||||||| |||||||| |||||||| || || ||||||| ||||| ||||||
Sbjct: 90 agagcttcataccaattgaagtccagaactattccaactttgccttgctgagctgcctga 31
Query: 459 tatttattgcggtatcttgcaac 481
|| ||| | ||||||||||||||
Sbjct: 30 tacttagtccggtatcttgcaac 8
>gb|C27840.1|C27840 C27840 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C53203_1A, mRNA sequence
Length = 271
Score = 139 bits (70), Expect = 2e-030
Identities = 196/238 (82%), Gaps = 1/238 (0%)
Strand = Plus / Minus
Query: 331 caagaaaccaaccaatatggaagtccctg-gccctttgcgctgctttttgatcttcagtt 389
||||| |||||||||| |||||||||| || ||||| || ||| ||| |||||||||
Sbjct: 261 caagataccaaccaatgtggaagtccccntgctctttgagccgctgcttggtcttcagtt 202
Query: 390 gagtttgtaaaaggttcataccagttgaagtcaagaactatcccgaccttgcctttctga 449
||||| | || || ||||||||| |||||||| |||||||| || || ||||||| ||||
Sbjct: 201 gagttggaaagagcttcataccaattgaagtccagaactattccaactttgccttgctga 142
Query: 450 gttgcctggtatttattgcggtatcttgcaactgcagtagcatgagataggagaatgtta 509
| |||||| || ||| | |||||||||||||| || | |||||| |||| ||||| |||
Sbjct: 141 gctgcctgatacttagtccggtatcttgcaacagctgcagcatgtgataagagaaaatta 82
Query: 510 tgaacaacaatgtaaggttctgtcgatgagttcncacnngcagtgcattgtgtgcacc 567
||| |||||||||| |||||||| | ||||||| ||| |||| ||||| ||||||||
Sbjct: 81 tgagcaacaatgtatggttctgttgctgagttcccaccagcagcgcattttgtgcacc 24
>gb|CA999930.1|CA999930 S234L_B03 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 679
Score = 127 bits (64), Expect = 9e-027
Identities = 130/152 (85%)
Strand = Plus / Minus
Query: 279 tctttcacaatgtcttgcattatctttggatattgcccatttattaatggatcaagaaac 338
|||||||||| ||||||||||||| || || || |||||||| |||||||||||| ||
Sbjct: 211 tctttcacaagatcttgcattatctgcgggtaatgtccatttatcaatggatcaagatac 152
Query: 339 caaccaatatggaagtccctggccctttgcgctgctttttgatcttcagttgagtttgta 398
|||||||| |||||||||||||| ||||| || ||| ||| |||||||||||||| | |
Sbjct: 151 caaccaatgtggaagtccctggctctttgagccgctgcttggtcttcagttgagttggaa 92
Query: 399 aaaggttcataccagttgaagtcaagaactat 430
| || ||||||||| |||||||| ||||||||
Sbjct: 91 agagcttcataccaattgaagtccagaactat 60
>gb|CF303132.1|CF303132 ABF1--01-G22.g1 ABF3-overexpressing transgenic rice lambda phage
cDNA library (ABF1) Oryza sativa (japonica
cultivar-group) cDNA clone ABF1--01-G22, mRNA sequence
Length = 639
Score = 125 bits (63), Expect = 3e-026
Identities = 153/184 (83%)
Strand = Plus / Minus
Query: 384 tcagttgagtttgtaaaaggttcataccagttgaagtcaagaactatcccgaccttgcct 443
||||||||||| | || || ||||||||| |||||||| |||||||| || || ||||||
Sbjct: 639 tcagttgagttggaaagagcttcataccaattgaagtccagaactattccaactttgcct 580
Query: 444 ttctgagttgcctggtatttattgcggtatcttgcaactgcagtagcatgagataggaga 503
| ||||| |||||| || ||| | |||||||||||||| || | |||||| |||| ||||
Sbjct: 579 tgctgagctgcctgatacttagtccggtatcttgcaacagctgcagcatgtgataagaga 520
Query: 504 atgttatgaacaacaatgtaaggttctgtcgatgagttcncacnngcagtgcattgtgtg 563
| |||||| |||||||||| |||||||| | ||||||| ||| |||| ||||| ||||
Sbjct: 519 aaattatgagcaacaatgtatggttctgttgctgagttcccaccagcagcgcattttgtg 460
Query: 564 cacc 567
||||
Sbjct: 459 cacc 456
Score = 48.1 bits (24), Expect = 0.006
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 591 tcataaccaannaatgctactatccttggctcat 624
|||||||||| | ||||||||||||||||||||
Sbjct: 432 tcataaccaagaagtgctactatccttggctcat 399
>gb|CF322973.1|CF322973 HDN--02-J09.g1 OsHDAC1-overexpressing transgenic rice lambda phage
cDNA library II (HDN) Oryza sativa (japonica
cultivar-group) cDNA clone HDN--02-J09, mRNA sequence
Length = 607
Score = 125 bits (63), Expect = 3e-026
Identities = 153/184 (83%)
Strand = Plus / Minus
Query: 384 tcagttgagtttgtaaaaggttcataccagttgaagtcaagaactatcccgaccttgcct 443
||||||||||| | || || ||||||||| |||||||| |||||||| || || ||||||
Sbjct: 607 tcagttgagttggaaagagcttcataccaattgaagtccagaactattccaactttgcct 548
Query: 444 ttctgagttgcctggtatttattgcggtatcttgcaactgcagtagcatgagataggaga 503
| ||||| |||||| || ||| | |||||||||||||| || | |||||| |||| ||||
Sbjct: 547 tgctgagctgcctgatacttagtccggtatcttgcaacagctgcagcatgtgataagaga 488
Query: 504 atgttatgaacaacaatgtaaggttctgtcgatgagttcncacnngcagtgcattgtgtg 563
| |||||| |||||||||| |||||||| | ||||||| ||| |||| ||||| ||||
Sbjct: 487 aaattatgagcaacaatgtatggttctgttgctgagttcccaccagcagcgcattttgtg 428
Query: 564 cacc 567
||||
Sbjct: 427 cacc 424
Score = 48.1 bits (24), Expect = 0.006
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 591 tcataaccaannaatgctactatccttggctcat 624
|||||||||| | ||||||||||||||||||||
Sbjct: 400 tcataaccaagaagtgctactatccttggctcat 367
>gb|AC133334.8| Oryza sativa chromosome 3 BAC OSJNBa0004L11 genomic sequence, complete
sequence
Length = 133889
Score = 123 bits (62), Expect = 1e-025
Identities = 137/162 (84%)
Strand = Plus / Minus
Query: 178 gttgatctgcaatgtagtatgtagtatattgattgatcccgaaatagtctgatgagccct 237
|||| ||||| ||||||| | |||||||||||||||||| ||||| |||| |||||||
Sbjct: 69994 gttggtctgccatgtagttagcagtatattgattgatcccaaaataatctgcggagccct 69935
Query: 238 tgactagcttggcctgttcaggtgtgaaacttggtagccggtctttcacaatgtcttgca 297
|||||||||| || |||||||| |||||| | |||| | ||||||||||| ||| |||
Sbjct: 69934 tgactagcttagcttgttcaggcgtgaaagtaggtaatctttctttcacaatatctcgca 69875
Query: 298 ttatctttggatattgcccatttattaatggatcaagaaacc 339
| | ||||||||||| ||||||||||| |||||||||||||
Sbjct: 69874 tattttttggatattgtccatttattaacggatcaagaaacc 69833
Score = 103 bits (52), Expect = 1e-019
Identities = 103/120 (85%)
Strand = Plus / Minus
Query: 337 accaaccaatatggaagtccctggccctttgcgctgctttttgatcttcagttgagtttg 396
||||||||| ||||||||| ||||| ||||| |||||| ||| |||||||||||||| |
Sbjct: 69746 accaaccaacatggaagtctctggctctttgagctgctgcttggtcttcagttgagttag 69687
Query: 397 taaaaggttcataccagttgaagtcaagaactatcccgaccttgcctttctgagttgcct 456
| | |||||||||||| || || || |||||||| |||| ||||||||||||| ||||||
Sbjct: 69686 ttagaggttcataccaattaaaatcgagaactattccgatcttgcctttctgacttgcct 69627
Score = 95.6 bits (48), Expect = 3e-017
Identities = 102/120 (85%)
Strand = Plus / Minus
Query: 337 accaaccaatatggaagtccctggccctttgcgctgctttttgatcttcagttgagtttg 396
|||||||||| |||||||||||||| ||||| || ||| ||| |||||||||||||| |
Sbjct: 78207 accaaccaatgtggaagtccctggctctttgagccgctgcttggtcttcagttgagttgg 78148
Query: 397 taaaaggttcataccagttgaagtcaagaactatcccgaccttgcctttctgagttgcct 456
|| || ||||||||| |||||||| |||||||| || || ||||||| ||||| |||||
Sbjct: 78147 aaagagcttcataccaattgaagtccagaactattccaactttgccttgctgagctgcct 78088
Score = 77.8 bits (39), Expect = 7e-012
Identities = 84/100 (84%)
Strand = Plus / Minus
Query: 468 cggtatcttgcaactgcagtagcatgagataggagaatgttatgaacaacaatgtaaggt 527
|||||||||||||| || | |||||| |||| ||||| |||||| |||||||||| |||
Sbjct: 77823 cggtatcttgcaacagctgcagcatgtgataagagaaaattatgagcaacaatgtatggt 77764
Query: 528 tctgtcgatgagttcncacnngcagtgcattgtgtgcacc 567
||||| | ||||||| ||| |||| ||||| ||||||||
Sbjct: 77763 tctgttgctgagttcccaccagcagcgcattttgtgcacc 77724
Score = 56.0 bits (28), Expect = 3e-005
Identities = 66/79 (83%)
Strand = Plus / Minus
Query: 468 cggtatcttgcaactgcagtagcatgagataggagaatgttatgaacaacaatgtaaggt 527
|||||||| ||||||||||||||||||||| || || |||||| ||||||| || ||
Sbjct: 68580 cggtatctatcaactgcagtagcatgagataagatgatattatgagcaacaatatatggc 68521
Query: 528 tctgtcgatgagttcncac 546
||||| | ||||||| |||
Sbjct: 68520 tctgttgctgagttcccac 68502
Score = 50.1 bits (25), Expect = 0.002
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 279 tctttcacaatgtcttgcattatctttggatattgcccatttattaatggatcaaga 335
|||||||||| ||||||||||||| || || || |||||||| ||||||||||||
Sbjct: 78404 tctttcacaagatcttgcattatctgcgggtaatgtccatttatcaatggatcaaga 78348
Score = 48.1 bits (24), Expect = 0.006
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 591 tcataaccaannaatgctactatccttggctcat 624
|||||||||| | ||||||||||||||||||||
Sbjct: 77700 tcataaccaagaagtgctactatccttggctcat 77667
Score = 48.1 bits (24), Expect = 0.006
Identities = 51/60 (85%)
Strand = Plus / Minus
Query: 18 tacttttcctttaggtagttcacgactccatacatgcccgatgggacgatgtaaagccaa 77
||||| ||||||| ||||||||| ||||||||||||| | || ||||| |||||||||
Sbjct: 70357 tacttctcctttatgtagttcacagctccatacatgccagtcggaacgatataaagccaa 70298
>gb|AACV01007734.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg007734, whole
genome shotgun sequence
Length = 18411
Score = 123 bits (62), Expect = 1e-025
Identities = 137/162 (84%)
Strand = Plus / Minus
Query: 178 gttgatctgcaatgtagtatgtagtatattgattgatcccgaaatagtctgatgagccct 237
|||| ||||| ||||||| | |||||||||||||||||| ||||| |||| |||||||
Sbjct: 9868 gttggtctgccatgtagttagcagtatattgattgatcccaaaataatctgcggagccct 9809
Query: 238 tgactagcttggcctgttcaggtgtgaaacttggtagccggtctttcacaatgtcttgca 297
|||||||||| || |||||||| |||||| | |||| | ||||||||||| ||| |||
Sbjct: 9808 tgactagcttagcttgttcaggcgtgaaagtaggtaatctttctttcacaatatctcgca 9749
Query: 298 ttatctttggatattgcccatttattaatggatcaagaaacc 339
| | ||||||||||| ||||||||||| |||||||||||||
Sbjct: 9748 tattttttggatattgtccatttattaacggatcaagaaacc 9707
Score = 103 bits (52), Expect = 1e-019
Identities = 103/120 (85%)
Strand = Plus / Minus
Query: 337 accaaccaatatggaagtccctggccctttgcgctgctttttgatcttcagttgagtttg 396
||||||||| ||||||||| ||||| ||||| |||||| ||| |||||||||||||| |
Sbjct: 9620 accaaccaacatggaagtctctggctctttgagctgctgcttggtcttcagttgagttag 9561
Query: 397 taaaaggttcataccagttgaagtcaagaactatcccgaccttgcctttctgagttgcct 456
| | |||||||||||| || || || |||||||| |||| ||||||||||||| ||||||
Sbjct: 9560 ttagaggttcataccaattaaaatcgagaactattccgatcttgcctttctgacttgcct 9501
Score = 95.6 bits (48), Expect = 3e-017
Identities = 102/120 (85%)
Strand = Plus / Minus
Query: 337 accaaccaatatggaagtccctggccctttgcgctgctttttgatcttcagttgagtttg 396
|||||||||| |||||||||||||| ||||| || ||| ||| |||||||||||||| |
Sbjct: 18081 accaaccaatgtggaagtccctggctctttgagccgctgcttggtcttcagttgagttgg 18022
Query: 397 taaaaggttcataccagttgaagtcaagaactatcccgaccttgcctttctgagttgcct 456
|| || ||||||||| |||||||| |||||||| || || ||||||| ||||| |||||
Sbjct: 18021 aaagagcttcataccaattgaagtccagaactattccaactttgccttgctgagctgcct 17962
Score = 77.8 bits (39), Expect = 7e-012
Identities = 84/100 (84%)
Strand = Plus / Minus
Query: 468 cggtatcttgcaactgcagtagcatgagataggagaatgttatgaacaacaatgtaaggt 527
|||||||||||||| || | |||||| |||| ||||| |||||| |||||||||| |||
Sbjct: 17697 cggtatcttgcaacagctgcagcatgtgataagagaaaattatgagcaacaatgtatggt 17638
Query: 528 tctgtcgatgagttcncacnngcagtgcattgtgtgcacc 567
||||| | ||||||| ||| |||| ||||| ||||||||
Sbjct: 17637 tctgttgctgagttcccaccagcagcgcattttgtgcacc 17598
Score = 56.0 bits (28), Expect = 3e-005
Identities = 66/79 (83%)
Strand = Plus / Minus
Query: 468 cggtatcttgcaactgcagtagcatgagataggagaatgttatgaacaacaatgtaaggt 527
|||||||| ||||||||||||||||||||| || || |||||| ||||||| || ||
Sbjct: 8454 cggtatctatcaactgcagtagcatgagataagatgatattatgagcaacaatatatggc 8395
Query: 528 tctgtcgatgagttcncac 546
||||| | ||||||| |||
Sbjct: 8394 tctgttgctgagttcccac 8376
Score = 50.1 bits (25), Expect = 0.002
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 279 tctttcacaatgtcttgcattatctttggatattgcccatttattaatggatcaaga 335
|||||||||| ||||||||||||| || || || |||||||| ||||||||||||
Sbjct: 18278 tctttcacaagatcttgcattatctgcgggtaatgtccatttatcaatggatcaaga 18222
Score = 48.1 bits (24), Expect = 0.006
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 591 tcataaccaannaatgctactatccttggctcat 624
|||||||||| | ||||||||||||||||||||
Sbjct: 17574 tcataaccaagaagtgctactatccttggctcat 17541
Score = 48.1 bits (24), Expect = 0.006
Identities = 51/60 (85%)
Strand = Plus / Minus
Query: 18 tacttttcctttaggtagttcacgactccatacatgcccgatgggacgatgtaaagccaa 77
||||| ||||||| ||||||||| ||||||||||||| | || ||||| |||||||||
Sbjct: 10231 tacttctcctttatgtagttcacagctccatacatgccagtcggaacgatataaagccaa 10172
>ref|NT_079916.2| Oryza sativa (japonica cultivar-group)
Length = 3914802
Score = 123 bits (62), Expect = 1e-025
Identities = 137/162 (84%)
Strand = Plus / Plus
Query: 178 gttgatctgcaatgtagtatgtagtatattgattgatcccgaaatagtctgatgagccct 237
|||| ||||| ||||||| | |||||||||||||||||| ||||| |||| |||||||
Sbjct: 1260297 gttggtctgccatgtagttagcagtatattgattgatcccaaaataatctgcggagccct 1260356
Query: 238 tgactagcttggcctgttcaggtgtgaaacttggtagccggtctttcacaatgtcttgca 297
|||||||||| || |||||||| |||||| | |||| | ||||||||||| ||| |||
Sbjct: 1260357 tgactagcttagcttgttcaggcgtgaaagtaggtaatctttctttcacaatatctcgca 1260416
Query: 298 ttatctttggatattgcccatttattaatggatcaagaaacc 339
| | ||||||||||| ||||||||||| |||||||||||||
Sbjct: 1260417 tattttttggatattgtccatttattaacggatcaagaaacc 1260458
Score = 103 bits (52), Expect = 1e-019
Identities = 103/120 (85%)
Strand = Plus / Plus
Query: 337 accaaccaatatggaagtccctggccctttgcgctgctttttgatcttcagttgagtttg 396
||||||||| ||||||||| ||||| ||||| |||||| ||| |||||||||||||| |
Sbjct: 1260545 accaaccaacatggaagtctctggctctttgagctgctgcttggtcttcagttgagttag 1260604
Query: 397 taaaaggttcataccagttgaagtcaagaactatcccgaccttgcctttctgagttgcct 456
| | |||||||||||| || || || |||||||| |||| ||||||||||||| ||||||
Sbjct: 1260605 ttagaggttcataccaattaaaatcgagaactattccgatcttgcctttctgacttgcct 1260664
Score = 95.6 bits (48), Expect = 3e-017
Identities = 102/120 (85%)
Strand = Plus / Plus
Query: 337 accaaccaatatggaagtccctggccctttgcgctgctttttgatcttcagttgagtttg 396
|||||||||| |||||||||||||| ||||| || ||| ||| |||||||||||||| |
Sbjct: 1252084 accaaccaatgtggaagtccctggctctttgagccgctgcttggtcttcagttgagttgg 1252143
Query: 397 taaaaggttcataccagttgaagtcaagaactatcccgaccttgcctttctgagttgcct 456
|| || ||||||||| |||||||| |||||||| || || ||||||| ||||| |||||
Sbjct: 1252144 aaagagcttcataccaattgaagtccagaactattccaactttgccttgctgagctgcct 1252203
Score = 77.8 bits (39), Expect = 7e-012
Identities = 84/100 (84%)
Strand = Plus / Plus
Query: 468 cggtatcttgcaactgcagtagcatgagataggagaatgttatgaacaacaatgtaaggt 527
|||||||||||||| || | |||||| |||| ||||| |||||| |||||||||| |||
Sbjct: 1252468 cggtatcttgcaacagctgcagcatgtgataagagaaaattatgagcaacaatgtatggt 1252527
Query: 528 tctgtcgatgagttcncacnngcagtgcattgtgtgcacc 567
||||| | ||||||| ||| |||| ||||| ||||||||
Sbjct: 1252528 tctgttgctgagttcccaccagcagcgcattttgtgcacc 1252567
Score = 56.0 bits (28), Expect = 3e-005
Identities = 66/79 (83%)
Strand = Plus / Plus
Query: 468 cggtatcttgcaactgcagtagcatgagataggagaatgttatgaacaacaatgtaaggt 527
|||||||| ||||||||||||||||||||| || || |||||| ||||||| || ||
Sbjct: 1261711 cggtatctatcaactgcagtagcatgagataagatgatattatgagcaacaatatatggc 1261770
Query: 528 tctgtcgatgagttcncac 546
||||| | ||||||| |||
Sbjct: 1261771 tctgttgctgagttcccac 1261789
Score = 50.1 bits (25), Expect = 0.002
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 279 tctttcacaatgtcttgcattatctttggatattgcccatttattaatggatcaaga 335
|||||||||| ||||||||||||| || || || |||||||| ||||||||||||
Sbjct: 1251887 tctttcacaagatcttgcattatctgcgggtaatgtccatttatcaatggatcaaga 1251943
Score = 48.1 bits (24), Expect = 0.006
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 18 tacttttcctttaggtagttcacgactccatacatgcccgatgggacgatgtaaagccaa 77
||||| ||||||| ||||||||| ||||||||||||| | || ||||| |||||||||
Sbjct: 1259934 tacttctcctttatgtagttcacagctccatacatgccagtcggaacgatataaagccaa 1259993
Score = 48.1 bits (24), Expect = 0.006
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 591 tcataaccaannaatgctactatccttggctcat 624
|||||||||| | ||||||||||||||||||||
Sbjct: 1252591 tcataaccaagaagtgctactatccttggctcat 1252624
>gb|CH401176.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000013 genomic
scaffold, whole genome shotgun sequence
Length = 9810738
Score = 123 bits (62), Expect = 1e-025
Identities = 137/162 (84%)
Strand = Plus / Plus
Query: 178 gttgatctgcaatgtagtatgtagtatattgattgatcccgaaatagtctgatgagccct 237
|||| ||||| ||||||| | |||||||||||||||||| ||||| |||| |||||||
Sbjct: 1737223 gttggtctgccatgtagttagcagtatattgattgatcccaaaataatctgcggagccct 1737282
Query: 238 tgactagcttggcctgttcaggtgtgaaacttggtagccggtctttcacaatgtcttgca 297
|||||||||| || |||||||| |||||| | |||| | ||||||||||| ||| |||
Sbjct: 1737283 tgactagcttagcttgttcaggcgtgaaagtaggtaatctttctttcacaatatctcgca 1737342
Query: 298 ttatctttggatattgcccatttattaatggatcaagaaacc 339
| | ||||||||||| ||||||||||| |||||||||||||
Sbjct: 1737343 tattttttggatattgtccatttattaacggatcaagaaacc 1737384
Score = 103 bits (52), Expect = 1e-019
Identities = 103/120 (85%)
Strand = Plus / Plus
Query: 337 accaaccaatatggaagtccctggccctttgcgctgctttttgatcttcagttgagtttg 396
||||||||| ||||||||| ||||| ||||| |||||| ||| |||||||||||||| |
Sbjct: 1737471 accaaccaacatggaagtctctggctctttgagctgctgcttggtcttcagttgagttag 1737530
Query: 397 taaaaggttcataccagttgaagtcaagaactatcccgaccttgcctttctgagttgcct 456
| | |||||||||||| || || || |||||||| |||| ||||||||||||| ||||||
Sbjct: 1737531 ttagaggttcataccaattaaaatcgagaactattccgatcttgcctttctgacttgcct 1737590
Score = 95.6 bits (48), Expect = 3e-017
Identities = 102/120 (85%)
Strand = Plus / Plus
Query: 337 accaaccaatatggaagtccctggccctttgcgctgctttttgatcttcagttgagtttg 396
|||||||||| |||||||||||||| ||||| || ||| ||| |||||||||||||| |
Sbjct: 1729010 accaaccaatgtggaagtccctggctctttgagccgctgcttggtcttcagttgagttgg 1729069
Query: 397 taaaaggttcataccagttgaagtcaagaactatcccgaccttgcctttctgagttgcct 456
|| || ||||||||| |||||||| |||||||| || || ||||||| ||||| |||||
Sbjct: 1729070 aaagagcttcataccaattgaagtccagaactattccaactttgccttgctgagctgcct 1729129
Score = 77.8 bits (39), Expect = 7e-012
Identities = 84/100 (84%)
Strand = Plus / Plus
Query: 468 cggtatcttgcaactgcagtagcatgagataggagaatgttatgaacaacaatgtaaggt 527
|||||||||||||| || | |||||| |||| ||||| |||||| |||||||||| |||
Sbjct: 1729394 cggtatcttgcaacagctgcagcatgtgataagagaaaattatgagcaacaatgtatggt 1729453
Query: 528 tctgtcgatgagttcncacnngcagtgcattgtgtgcacc 567
||||| | ||||||| ||| |||| ||||| ||||||||
Sbjct: 1729454 tctgttgctgagttcccaccagcagcgcattttgtgcacc 1729493
Score = 56.0 bits (28), Expect = 3e-005
Identities = 66/79 (83%)
Strand = Plus / Plus
Query: 468 cggtatcttgcaactgcagtagcatgagataggagaatgttatgaacaacaatgtaaggt 527
|||||||| ||||||||||||||||||||| || || |||||| ||||||| || ||
Sbjct: 1738637 cggtatctatcaactgcagtagcatgagataagatgatattatgagcaacaatatatggc 1738696
Query: 528 tctgtcgatgagttcncac 546
||||| | ||||||| |||
Sbjct: 1738697 tctgttgctgagttcccac 1738715
Score = 50.1 bits (25), Expect = 0.002
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 279 tctttcacaatgtcttgcattatctttggatattgcccatttattaatggatcaaga 335
|||||||||| ||||||||||||| || || || |||||||| ||||||||||||
Sbjct: 1728813 tctttcacaagatcttgcattatctgcgggtaatgtccatttatcaatggatcaaga 1728869
Score = 48.1 bits (24), Expect = 0.006
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 18 tacttttcctttaggtagttcacgactccatacatgcccgatgggacgatgtaaagccaa 77
||||| ||||||| ||||||||| ||||||||||||| | || ||||| |||||||||
Sbjct: 1736860 tacttctcctttatgtagttcacagctccatacatgccagtcggaacgatataaagccaa 1736919
Score = 48.1 bits (24), Expect = 0.006
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 591 tcataaccaannaatgctactatccttggctcat 624
|||||||||| | ||||||||||||||||||||
Sbjct: 1729517 tcataaccaagaagtgctactatccttggctcat 1729550
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 123 bits (62), Expect = 1e-025
Identities = 137/162 (84%)
Strand = Plus / Plus
Query: 178 gttgatctgcaatgtagtatgtagtatattgattgatcccgaaatagtctgatgagccct 237
|||| ||||| ||||||| | |||||||||||||||||| ||||| |||| |||||||
Sbjct: 29003386 gttggtctgccatgtagttagcagtatattgattgatcccaaaataatctgcggagccct 29003445
Query: 238 tgactagcttggcctgttcaggtgtgaaacttggtagccggtctttcacaatgtcttgca 297
|||||||||| || |||||||| |||||| | |||| | ||||||||||| ||| |||
Sbjct: 29003446 tgactagcttagcttgttcaggcgtgaaagtaggtaatctttctttcacaatatctcgca 29003505
Query: 298 ttatctttggatattgcccatttattaatggatcaagaaacc 339
| | ||||||||||| ||||||||||| |||||||||||||
Sbjct: 29003506 tattttttggatattgtccatttattaacggatcaagaaacc 29003547
Score = 103 bits (52), Expect = 1e-019
Identities = 103/120 (85%)
Strand = Plus / Plus
Query: 337 accaaccaatatggaagtccctggccctttgcgctgctttttgatcttcagttgagtttg 396
||||||||| ||||||||| ||||| ||||| |||||| ||| |||||||||||||| |
Sbjct: 29003634 accaaccaacatggaagtctctggctctttgagctgctgcttggtcttcagttgagttag 29003693
Query: 397 taaaaggttcataccagttgaagtcaagaactatcccgaccttgcctttctgagttgcct 456
| | |||||||||||| || || || |||||||| |||| ||||||||||||| ||||||
Sbjct: 29003694 ttagaggttcataccaattaaaatcgagaactattccgatcttgcctttctgacttgcct 29003753
Score = 95.6 bits (48), Expect = 3e-017
Identities = 102/120 (85%)
Strand = Plus / Plus
Query: 337 accaaccaatatggaagtccctggccctttgcgctgctttttgatcttcagttgagtttg 396
|||||||||| |||||||||||||| ||||| || ||| ||| |||||||||||||| |
Sbjct: 28995173 accaaccaatgtggaagtccctggctctttgagccgctgcttggtcttcagttgagttgg 28995232
Query: 397 taaaaggttcataccagttgaagtcaagaactatcccgaccttgcctttctgagttgcct 456
|| || ||||||||| |||||||| |||||||| || || ||||||| ||||| |||||
Sbjct: 28995233 aaagagcttcataccaattgaagtccagaactattccaactttgccttgctgagctgcct 28995292
Score = 77.8 bits (39), Expect = 7e-012
Identities = 84/100 (84%)
Strand = Plus / Plus
Query: 468 cggtatcttgcaactgcagtagcatgagataggagaatgttatgaacaacaatgtaaggt 527
|||||||||||||| || | |||||| |||| ||||| |||||| |||||||||| |||
Sbjct: 28995557 cggtatcttgcaacagctgcagcatgtgataagagaaaattatgagcaacaatgtatggt 28995616
Query: 528 tctgtcgatgagttcncacnngcagtgcattgtgtgcacc 567
||||| | ||||||| ||| |||| ||||| ||||||||
Sbjct: 28995617 tctgttgctgagttcccaccagcagcgcattttgtgcacc 28995656
Score = 56.0 bits (28), Expect = 3e-005
Identities = 66/79 (83%)
Strand = Plus / Plus
Query: 468 cggtatcttgcaactgcagtagcatgagataggagaatgttatgaacaacaatgtaaggt 527
|||||||| ||||||||||||||||||||| || || |||||| ||||||| || ||
Sbjct: 29004800 cggtatctatcaactgcagtagcatgagataagatgatattatgagcaacaatatatggc 29004859
Query: 528 tctgtcgatgagttcncac 546
||||| | ||||||| |||
Sbjct: 29004860 tctgttgctgagttcccac 29004878
Score = 50.1 bits (25), Expect = 0.002
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 279 tctttcacaatgtcttgcattatctttggatattgcccatttattaatggatcaaga 335
|||||||||| ||||||||||||| || || || |||||||| ||||||||||||
Sbjct: 28994976 tctttcacaagatcttgcattatctgcgggtaatgtccatttatcaatggatcaaga 28995032
Score = 48.1 bits (24), Expect = 0.006
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 18 tacttttcctttaggtagttcacgactccatacatgcccgatgggacgatgtaaagccaa 77
||||| ||||||| ||||||||| ||||||||||||| | || ||||| |||||||||
Sbjct: 29003023 tacttctcctttatgtagttcacagctccatacatgccagtcggaacgatataaagccaa 29003082
Score = 48.1 bits (24), Expect = 0.006
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 591 tcataaccaannaatgctactatccttggctcat 624
|||||||||| | ||||||||||||||||||||
Sbjct: 28995680 tcataaccaagaagtgctactatccttggctcat 28995713
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 123 bits (62), Expect = 1e-025
Identities = 137/162 (84%)
Strand = Plus / Plus
Query: 178 gttgatctgcaatgtagtatgtagtatattgattgatcccgaaatagtctgatgagccct 237
|||| ||||| ||||||| | |||||||||||||||||| ||||| |||| |||||||
Sbjct: 28046356 gttggtctgccatgtagttagcagtatattgattgatcccaaaataatctgcggagccct 28046415
Query: 238 tgactagcttggcctgttcaggtgtgaaacttggtagccggtctttcacaatgtcttgca 297
|||||||||| || |||||||| |||||| | |||| | ||||||||||| ||| |||
Sbjct: 28046416 tgactagcttagcttgttcaggcgtgaaagtaggtaatctttctttcacaatatctcgca 28046475
Query: 298 ttatctttggatattgcccatttattaatggatcaagaaacc 339
| | ||||||||||| ||||||||||| |||||||||||||
Sbjct: 28046476 tattttttggatattgtccatttattaacggatcaagaaacc 28046517
Score = 103 bits (52), Expect = 1e-019
Identities = 103/120 (85%)
Strand = Plus / Plus
Query: 337 accaaccaatatggaagtccctggccctttgcgctgctttttgatcttcagttgagtttg 396
||||||||| ||||||||| ||||| ||||| |||||| ||| |||||||||||||| |
Sbjct: 28046604 accaaccaacatggaagtctctggctctttgagctgctgcttggtcttcagttgagttag 28046663
Query: 397 taaaaggttcataccagttgaagtcaagaactatcccgaccttgcctttctgagttgcct 456
| | |||||||||||| || || || |||||||| |||| ||||||||||||| ||||||
Sbjct: 28046664 ttagaggttcataccaattaaaatcgagaactattccgatcttgcctttctgacttgcct 28046723
Score = 95.6 bits (48), Expect = 3e-017
Identities = 102/120 (85%)
Strand = Plus / Plus
Query: 337 accaaccaatatggaagtccctggccctttgcgctgctttttgatcttcagttgagtttg 396
|||||||||| |||||||||||||| ||||| || ||| ||| |||||||||||||| |
Sbjct: 28038143 accaaccaatgtggaagtccctggctctttgagccgctgcttggtcttcagttgagttgg 28038202
Query: 397 taaaaggttcataccagttgaagtcaagaactatcccgaccttgcctttctgagttgcct 456
|| || ||||||||| |||||||| |||||||| || || ||||||| ||||| |||||
Sbjct: 28038203 aaagagcttcataccaattgaagtccagaactattccaactttgccttgctgagctgcct 28038262
Score = 77.8 bits (39), Expect = 7e-012
Identities = 84/100 (84%)
Strand = Plus / Plus
Query: 468 cggtatcttgcaactgcagtagcatgagataggagaatgttatgaacaacaatgtaaggt 527
|||||||||||||| || | |||||| |||| ||||| |||||| |||||||||| |||
Sbjct: 28038527 cggtatcttgcaacagctgcagcatgtgataagagaaaattatgagcaacaatgtatggt 28038586
Query: 528 tctgtcgatgagttcncacnngcagtgcattgtgtgcacc 567
||||| | ||||||| ||| |||| ||||| ||||||||
Sbjct: 28038587 tctgttgctgagttcccaccagcagcgcattttgtgcacc 28038626
Score = 56.0 bits (28), Expect = 3e-005
Identities = 66/79 (83%)
Strand = Plus / Plus
Query: 468 cggtatcttgcaactgcagtagcatgagataggagaatgttatgaacaacaatgtaaggt 527
|||||||| ||||||||||||||||||||| || || |||||| ||||||| || ||
Sbjct: 28047770 cggtatctatcaactgcagtagcatgagataagatgatattatgagcaacaatatatggc 28047829
Query: 528 tctgtcgatgagttcncac 546
||||| | ||||||| |||
Sbjct: 28047830 tctgttgctgagttcccac 28047848
Score = 50.1 bits (25), Expect = 0.002
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 279 tctttcacaatgtcttgcattatctttggatattgcccatttattaatggatcaaga 335
|||||||||| ||||||||||||| || || || |||||||| ||||||||||||
Sbjct: 28037946 tctttcacaagatcttgcattatctgcgggtaatgtccatttatcaatggatcaaga 28038002
Score = 48.1 bits (24), Expect = 0.006
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 18 tacttttcctttaggtagttcacgactccatacatgcccgatgggacgatgtaaagccaa 77
||||| ||||||| ||||||||| ||||||||||||| | || ||||| |||||||||
Sbjct: 28045993 tacttctcctttatgtagttcacagctccatacatgccagtcggaacgatataaagccaa 28046052
Score = 48.1 bits (24), Expect = 0.006
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 591 tcataaccaannaatgctactatccttggctcat 624
|||||||||| | ||||||||||||||||||||
Sbjct: 28038650 tcataaccaagaagtgctactatccttggctcat 28038683
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 123 bits (62), Expect = 1e-025
Identities = 137/162 (84%)
Strand = Plus / Plus
Query: 178 gttgatctgcaatgtagtatgtagtatattgattgatcccgaaatagtctgatgagccct 237
|||| ||||| ||||||| | |||||||||||||||||| ||||| |||| |||||||
Sbjct: 27955032 gttggtctgccatgtagttagcagtatattgattgatcccaaaataatctgcggagccct 27955091
Query: 238 tgactagcttggcctgttcaggtgtgaaacttggtagccggtctttcacaatgtcttgca 297
|||||||||| || |||||||| |||||| | |||| | ||||||||||| ||| |||
Sbjct: 27955092 tgactagcttagcttgttcaggcgtgaaagtaggtaatctttctttcacaatatctcgca 27955151
Query: 298 ttatctttggatattgcccatttattaatggatcaagaaacc 339
| | ||||||||||| ||||||||||| |||||||||||||
Sbjct: 27955152 tattttttggatattgtccatttattaacggatcaagaaacc 27955193
Score = 103 bits (52), Expect = 1e-019
Identities = 103/120 (85%)
Strand = Plus / Plus
Query: 337 accaaccaatatggaagtccctggccctttgcgctgctttttgatcttcagttgagtttg 396
||||||||| ||||||||| ||||| ||||| |||||| ||| |||||||||||||| |
Sbjct: 27955280 accaaccaacatggaagtctctggctctttgagctgctgcttggtcttcagttgagttag 27955339
Query: 397 taaaaggttcataccagttgaagtcaagaactatcccgaccttgcctttctgagttgcct 456
| | |||||||||||| || || || |||||||| |||| ||||||||||||| ||||||
Sbjct: 27955340 ttagaggttcataccaattaaaatcgagaactattccgatcttgcctttctgacttgcct 27955399
Score = 95.6 bits (48), Expect = 3e-017
Identities = 102/120 (85%)
Strand = Plus / Plus
Query: 337 accaaccaatatggaagtccctggccctttgcgctgctttttgatcttcagttgagtttg 396
|||||||||| |||||||||||||| ||||| || ||| ||| |||||||||||||| |
Sbjct: 27946819 accaaccaatgtggaagtccctggctctttgagccgctgcttggtcttcagttgagttgg 27946878
Query: 397 taaaaggttcataccagttgaagtcaagaactatcccgaccttgcctttctgagttgcct 456
|| || ||||||||| |||||||| |||||||| || || ||||||| ||||| |||||
Sbjct: 27946879 aaagagcttcataccaattgaagtccagaactattccaactttgccttgctgagctgcct 27946938
Score = 77.8 bits (39), Expect = 7e-012
Identities = 84/100 (84%)
Strand = Plus / Plus
Query: 468 cggtatcttgcaactgcagtagcatgagataggagaatgttatgaacaacaatgtaaggt 527
|||||||||||||| || | |||||| |||| ||||| |||||| |||||||||| |||
Sbjct: 27947203 cggtatcttgcaacagctgcagcatgtgataagagaaaattatgagcaacaatgtatggt 27947262
Query: 528 tctgtcgatgagttcncacnngcagtgcattgtgtgcacc 567
||||| | ||||||| ||| |||| ||||| ||||||||
Sbjct: 27947263 tctgttgctgagttcccaccagcagcgcattttgtgcacc 27947302
Score = 56.0 bits (28), Expect = 3e-005
Identities = 66/79 (83%)
Strand = Plus / Plus
Query: 468 cggtatcttgcaactgcagtagcatgagataggagaatgttatgaacaacaatgtaaggt 527
|||||||| ||||||||||||||||||||| || || |||||| ||||||| || ||
Sbjct: 27956446 cggtatctatcaactgcagtagcatgagataagatgatattatgagcaacaatatatggc 27956505
Query: 528 tctgtcgatgagttcncac 546
||||| | ||||||| |||
Sbjct: 27956506 tctgttgctgagttcccac 27956524
Score = 50.1 bits (25), Expect = 0.002
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 279 tctttcacaatgtcttgcattatctttggatattgcccatttattaatggatcaaga 335
|||||||||| ||||||||||||| || || || |||||||| ||||||||||||
Sbjct: 27946622 tctttcacaagatcttgcattatctgcgggtaatgtccatttatcaatggatcaaga 27946678
Score = 48.1 bits (24), Expect = 0.006
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 18 tacttttcctttaggtagttcacgactccatacatgcccgatgggacgatgtaaagccaa 77
||||| ||||||| ||||||||| ||||||||||||| | || ||||| |||||||||
Sbjct: 27954669 tacttctcctttatgtagttcacagctccatacatgccagtcggaacgatataaagccaa 27954728
Score = 48.1 bits (24), Expect = 0.006
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 591 tcataaccaannaatgctactatccttggctcat 624
|||||||||| | ||||||||||||||||||||
Sbjct: 27947326 tcataaccaagaagtgctactatccttggctcat 27947359
>gb|AC091670.7| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1212_C08
map R2847, complete sequence
Length = 100918
Score = 123 bits (62), Expect = 1e-025
Identities = 137/162 (84%)
Strand = Plus / Plus
Query: 178 gttgatctgcaatgtagtatgtagtatattgattgatcccgaaatagtctgatgagccct 237
|||| ||||| ||||||| | |||||||||||||||||| ||||| |||| |||||||
Sbjct: 90760 gttggtctgccatgtagttagcagtatattgattgatcccaaaataatctgcggagccct 90819
Query: 238 tgactagcttggcctgttcaggtgtgaaacttggtagccggtctttcacaatgtcttgca 297
|||||||||| || |||||||| |||||| | |||| | ||||||||||| ||| |||
Sbjct: 90820 tgactagcttagcttgttcaggcgtgaaagtaggtaatctttctttcacaatatctcgca 90879
Query: 298 ttatctttggatattgcccatttattaatggatcaagaaacc 339
| | ||||||||||| ||||||||||| |||||||||||||
Sbjct: 90880 tattttttggatattgtccatttattaacggatcaagaaacc 90921
Score = 103 bits (52), Expect = 1e-019
Identities = 103/120 (85%)
Strand = Plus / Plus
Query: 337 accaaccaatatggaagtccctggccctttgcgctgctttttgatcttcagttgagtttg 396
||||||||| ||||||||| ||||| ||||| |||||| ||| |||||||||||||| |
Sbjct: 91008 accaaccaacatggaagtctctggctctttgagctgctgcttggtcttcagttgagttag 91067
Query: 397 taaaaggttcataccagttgaagtcaagaactatcccgaccttgcctttctgagttgcct 456
| | |||||||||||| || || || |||||||| |||| ||||||||||||| ||||||
Sbjct: 91068 ttagaggttcataccaattaaaatcgagaactattccgatcttgcctttctgacttgcct 91127
Score = 95.6 bits (48), Expect = 3e-017
Identities = 102/120 (85%)
Strand = Plus / Plus
Query: 337 accaaccaatatggaagtccctggccctttgcgctgctttttgatcttcagttgagtttg 396
|||||||||| |||||||||||||| ||||| || ||| ||| |||||||||||||| |
Sbjct: 82547 accaaccaatgtggaagtccctggctctttgagccgctgcttggtcttcagttgagttgg 82606
Query: 397 taaaaggttcataccagttgaagtcaagaactatcccgaccttgcctttctgagttgcct 456
|| || ||||||||| |||||||| |||||||| || || ||||||| ||||| |||||
Sbjct: 82607 aaagagcttcataccaattgaagtccagaactattccaactttgccttgctgagctgcct 82666
Score = 77.8 bits (39), Expect = 7e-012
Identities = 84/100 (84%)
Strand = Plus / Plus
Query: 468 cggtatcttgcaactgcagtagcatgagataggagaatgttatgaacaacaatgtaaggt 527
|||||||||||||| || | |||||| |||| ||||| |||||| |||||||||| |||
Sbjct: 82931 cggtatcttgcaacagctgcagcatgtgataagagaaaattatgagcaacaatgtatggt 82990
Query: 528 tctgtcgatgagttcncacnngcagtgcattgtgtgcacc 567
||||| | ||||||| ||| |||| ||||| ||||||||
Sbjct: 82991 tctgttgctgagttcccaccagcagcgcattttgtgcacc 83030
Score = 56.0 bits (28), Expect = 3e-005
Identities = 66/79 (83%)
Strand = Plus / Plus
Query: 468 cggtatcttgcaactgcagtagcatgagataggagaatgttatgaacaacaatgtaaggt 527
|||||||| ||||||||||||||||||||| || || |||||| ||||||| || ||
Sbjct: 92174 cggtatctatcaactgcagtagcatgagataagatgatattatgagcaacaatatatggc 92233
Query: 528 tctgtcgatgagttcncac 546
||||| | ||||||| |||
Sbjct: 92234 tctgttgctgagttcccac 92252
Score = 50.1 bits (25), Expect = 0.002
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 279 tctttcacaatgtcttgcattatctttggatattgcccatttattaatggatcaaga 335
|||||||||| ||||||||||||| || || || |||||||| ||||||||||||
Sbjct: 82350 tctttcacaagatcttgcattatctgcgggtaatgtccatttatcaatggatcaaga 82406
Score = 48.1 bits (24), Expect = 0.006
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 18 tacttttcctttaggtagttcacgactccatacatgcccgatgggacgatgtaaagccaa 77
||||| ||||||| ||||||||| ||||||||||||| | || ||||| |||||||||
Sbjct: 90397 tacttctcctttatgtagttcacagctccatacatgccagtcggaacgatataaagccaa 90456
Score = 48.1 bits (24), Expect = 0.006
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 591 tcataaccaannaatgctactatccttggctcat 624
|||||||||| | ||||||||||||||||||||
Sbjct: 83054 tcataaccaagaagtgctactatccttggctcat 83087
>gb|D24663.1|D24663 RICR2336A Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R2336_1A, mRNA sequence
Length = 379
Score = 121 bits (61), Expect = 5e-025
Identities = 129/152 (84%)
Strand = Plus / Minus
Query: 279 tctttcacaatgtcttgcattatctttggatattgcccatttattaatggatcaagaaac 338
|||||||||| ||||||||||||| || || || |||||||| |||||||||||| ||
Sbjct: 163 tctttcacaagatcttgcattatctgcgggtaatgtccatttatcaatggatcaagatac 104
Query: 339 caaccaatatggaagtccctggccctttgcgctgctttttgatcttcagttgagtttgta 398
|||||||| |||||||||||||| ||||| || ||| ||| |||||||||||||| | |
Sbjct: 103 caaccaatgtggaagtccctggctctttgagccgctgcttggtcttcagttgagttggaa 44
Query: 399 aaaggttcataccagttgaagtcaagaactat 430
| || ||||||||| |||||| | ||||||||
Sbjct: 43 agagcttcataccaattgaagnccagaactat 12
>gb|CF323484.1|CF323484 HDN--03-P15.g1 OsHDAC1-overexpressing transgenic rice lambda phage
cDNA library II (HDN) Oryza sativa (japonica
cultivar-group) cDNA clone HDN--03-P15, mRNA sequence
Length = 647
Score = 95.6 bits (48), Expect = 3e-017
Identities = 152/185 (82%), Gaps = 2/185 (1%)
Strand = Plus / Minus
Query: 384 tcagttgagtttgtaaaaggttcataccagttgaagtcaagaactatcccgaccttgcct 443
||||||||||| | || || ||||||||| |||||||| |||||||| || || |||||
Sbjct: 647 tcagttgagttggaaagagcttcataccaattgaagtccagaactattccaactttgcc- 589
Query: 444 ttctgagttgcctggtatttattgcggtatcttgcaactgcagta-gcatgagataggag 502
| ||||| |||||| || ||| | |||||||||||||| || | | ||||| |||| |||
Sbjct: 588 tgctgagctgcctgatacttagtccggtatcttgcaacagctgcaggcatgtgataagag 529
Query: 503 aatgttatgaacaacaatgtaaggttctgtcgatgagttcncacnngcagtgcattgtgt 562
|| |||||| |||||||||| |||||||| | ||||||| ||| |||| ||||| |||
Sbjct: 528 aaaattatgagcaacaatgtatggttctgttgctgagttcccaccagcagcgcattttgt 469
Query: 563 gcacc 567
|||||
Sbjct: 468 gcacc 464
Score = 48.1 bits (24), Expect = 0.006
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 591 tcataaccaannaatgctactatccttggctcat 624
|||||||||| | ||||||||||||||||||||
Sbjct: 440 tcataaccaagaagtgctactatccttggctcat 407
>gb|CF322778.1|CF322778 HDN--02-A16.g1 OsHDAC1-overexpressing transgenic rice lambda phage
cDNA library II (HDN) Oryza sativa (japonica
cultivar-group) cDNA clone HDN--02-A16, mRNA sequence
Length = 520
Score = 77.8 bits (39), Expect = 7e-012
Identities = 84/100 (84%)
Strand = Plus / Minus
Query: 468 cggtatcttgcaactgcagtagcatgagataggagaatgttatgaacaacaatgtaaggt 527
|||||||||||||| || | |||||| |||| ||||| |||||| |||||||||| |||
Sbjct: 519 cggtatcttgcaacagctgcagcatgtgataagagaaaattatgagcaacaatgtatggt 460
Query: 528 tctgtcgatgagttcncacnngcagtgcattgtgtgcacc 567
||||| | ||||||| ||| |||| ||||| ||||||||
Sbjct: 459 tctgttgctgagttcccaccagcagcgcattttgtgcacc 420
Score = 48.1 bits (24), Expect = 0.006
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 591 tcataaccaannaatgctactatccttggctcat 624
|||||||||| | ||||||||||||||||||||
Sbjct: 396 tcataaccaagaagtgctactatccttggctcat 363
>gb|CF323923.1|CF323923 HDN--05-C04.g1 OsHDAC1-overexpressing transgenic rice lambda phage
cDNA library II (HDN) Oryza sativa (japonica
cultivar-group) cDNA clone HDN--05-C04, mRNA sequence
Length = 190
Score = 77.8 bits (39), Expect = 7e-012
Identities = 84/100 (84%)
Strand = Plus / Minus
Query: 468 cggtatcttgcaactgcagtagcatgagataggagaatgttatgaacaacaatgtaaggt 527
|||||||||||||| || | |||||| |||| ||||| |||||| |||||||||| |||
Sbjct: 187 cggtatcttgcaacagctgcagcatgtgataagagaaaattatgagcaacaatgtatggt 128
Query: 528 tctgtcgatgagttcncacnngcagtgcattgtgtgcacc 567
||||| | ||||||| ||| |||| ||||| ||||||||
Sbjct: 127 tctgttgctgagttcccaccagcagcgcattttgtgcacc 88
Score = 48.1 bits (24), Expect = 0.006
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 591 tcataaccaannaatgctactatccttggctcat 624
|||||||||| | ||||||||||||||||||||
Sbjct: 64 tcataaccaagaagtgctactatccttggctcat 31
>gb|CF324550.1|CF324550 HDN--06-N09.g1 OsHDAC1-overexpressing transgenic rice lambda phage
cDNA library II (HDN) Oryza sativa (japonica
cultivar-group) cDNA clone HDN--06-N09, mRNA sequence
Length = 530
Score = 77.8 bits (39), Expect = 7e-012
Identities = 84/100 (84%)
Strand = Plus / Minus
Query: 468 cggtatcttgcaactgcagtagcatgagataggagaatgttatgaacaacaatgtaaggt 527
|||||||||||||| || | |||||| |||| ||||| |||||| |||||||||| |||
Sbjct: 519 cggtatcttgcaacagctgcagcatgtgataagagaaaattatgagcaacaatgtatggt 460
Query: 528 tctgtcgatgagttcncacnngcagtgcattgtgtgcacc 567
||||| | ||||||| ||| |||| ||||| ||||||||
Sbjct: 459 tctgttgctgagttcccaccagcagcgcattttgtgcacc 420
Score = 48.1 bits (24), Expect = 0.006
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 591 tcataaccaannaatgctactatccttggctcat 624
|||||||||| | ||||||||||||||||||||
Sbjct: 396 tcataaccaagaagtgctactatccttggctcat 363
>gb|AU097444.1|AU097444 AU097444 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S4984, mRNA sequence
Length = 561
Score = 73.8 bits (37), Expect = 1e-010
Identities = 82/98 (83%)
Strand = Plus / Minus
Query: 470 gtatcttgcaactgcagtagcatgagataggagaatgttatgaacaacaatgtaaggttc 529
|||||||||||| || | |||||| |||| ||||| |||||| |||||||||| |||||
Sbjct: 561 gtatcttgcaacagctgcagcatgtgataagagaaaattatgagcaacaatgtatggttc 502
Query: 530 tgtcgatgagttcncacnngcagtgcattgtgtgcacc 567
||| | ||||||| ||| |||| ||||| ||||||||
Sbjct: 501 tgttgctgagttcccaccagcagcgcattttgtgcacc 464
>gb|D24959.1|D24959 RICR2847A Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R2847_1A, mRNA sequence
Length = 470
Score = 73.8 bits (37), Expect = 1e-010
Identities = 100/122 (81%)
Strand = Plus / Minus
Query: 446 ctgagttgcctggtatttattgcggtatcttgcaactgcagtagcatgagataggagaat 505
||||| |||||| || ||| | |||||||||||||| || | |||||| |||| |||||
Sbjct: 402 ctgagctgcctgatacttagtccggtatcttgcaacagctgcagcatgtgataagagaaa 343
Query: 506 gttatgaacaacaatgtaaggttctgtcgatgagttcncacnngcagtgcattgtgtgca 565
|||||| |||||||||| |||||||| | ||||| | ||| |||| ||||| ||||||
Sbjct: 342 attatgagcaacaatgtatggttctgttgctgagtccccaccagcagcgcattttgtgca 283
Query: 566 cc 567
||
Sbjct: 282 cc 281
Score = 48.1 bits (24), Expect = 0.006
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 591 tcataaccaannaatgctactatccttggctcat 624
|||||||||| | ||||||||||||||||||||
Sbjct: 257 tcataaccaagaagtgctactatccttggctcat 224
>gb|CB668311.1|CB668311 OSJNEd16B19.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd16B19 5', mRNA sequence
Length = 856
Score = 71.9 bits (36), Expect = 4e-010
Identities = 83/100 (83%)
Strand = Plus / Minus
Query: 468 cggtatcttgcaactgcagtagcatgagataggagaatgttatgaacaacaatgtaaggt 527
|||||||||||| | || | |||||| |||| ||||| |||||| |||||||||| |||
Sbjct: 847 cggtatcttgcancagctgcagcatgtgataagagaaaattatgagcaacaatgtatggt 788
Query: 528 tctgtcgatgagttcncacnngcagtgcattgtgtgcacc 567
||||| | ||||||| ||| |||| ||||| ||||||||
Sbjct: 787 tctgttgctgagttcccaccagcagcgcattttgtgcacc 748
Score = 48.1 bits (24), Expect = 0.006
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 591 tcataaccaannaatgctactatccttggctcat 624
|||||||||| | ||||||||||||||||||||
Sbjct: 724 tcataaccaagaagtgctactatccttggctcat 691
>gb|CB648777.1|CB648777 OSJNEb12F12.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb12F12 5', mRNA sequence
Length = 826
Score = 63.9 bits (32), Expect = 1e-007
Identities = 108/137 (78%)
Strand = Plus / Minus
Query: 488 agcatgagataggagaatgttatgaacaacaatgtaaggttctgtcgatgagttcncacn 547
|||||| |||| ||||| |||||| |||||||||| |||||||| | ||||||| |||
Sbjct: 824 agcatgtgataagagaaaattatgagcaacaatgtatggttctgttgctgagttcccacc 765
Query: 548 ngcagtgcattgtgtgcaccnnnnaggggggnnaagccctttatcataaccaannaatgc 607
|||| ||||| |||||||| ||| || | |||| |||||||||| | |||
Sbjct: 764 agcagcgcattttgtgcaccttttaggaggattagttccttggtcataaccaagaagtgc 705
Query: 608 tactatccttggctcat 624
|||||||||||||||||
Sbjct: 704 tactatccttggctcat 688
>gb|CB648778.1|CB648778 OSJNEb12F12.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb12F12 3', mRNA sequence
Length = 686
Score = 63.9 bits (32), Expect = 1e-007
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 279 tctttcacaatgtcttgcattatctttggatattgcccatttattaatggatcaagaaac 338
|||||||||| ||||||||||||| || || || |||||||| |||||||||||| ||
Sbjct: 619 tctttcacaagatcttgcattatctgcgggtaatgtccatttatcaatggatcaagatac 678
Query: 339 caaccaat 346
||||||||
Sbjct: 679 caaccaat 686
>gb|CF312197.1|CF312197 ABF--07-M20.b1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--07-M20, mRNA sequence
Length = 453
Score = 63.9 bits (32), Expect = 1e-007
Identities = 59/68 (86%)
Strand = Plus / Minus
Query: 279 tctttcacaatgtcttgcattatctttggatattgcccatttattaatggatcaagaaac 338
|||||||||| ||||||||||||| || || || |||||||| |||||||||||| ||
Sbjct: 73 tctttcacaagatcttgcattatctgcgggtaatgtccatttatcaatggatcaagatac 14
Query: 339 caaccaat 346
||||||||
Sbjct: 13 caaccaat 6
>gb|CA998259.1|CA998259 S234E_C10 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 443
Score = 58.0 bits (29), Expect = 7e-006
Identities = 86/105 (81%)
Strand = Plus / Minus
Query: 18 tacttttcctttaggtagttcacgactccatacatgcccgatgggacgatgtaaagccaa 77
||||| ||||||| ||||||||| ||||||||||||| | || ||||| |||||||||
Sbjct: 193 tacttctcctttatgtagttcacagctccatacatgccagtcggaacgatataaagccaa 134
Query: 78 attgagtgcgccatctgtccaatttgcacgccattcctttgaaag 122
| |||| ||| |||||||||| | |||||||| | |||||||
Sbjct: 133 ttagagtttgcctgctgtccaattggtacgccatttcgttgaaag 89
>gb|CA998261.1|CA998261 S234E_C12 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 693
Score = 58.0 bits (29), Expect = 7e-006
Identities = 86/105 (81%)
Strand = Plus / Minus
Query: 18 tacttttcctttaggtagttcacgactccatacatgcccgatgggacgatgtaaagccaa 77
||||| ||||||| ||||||||| ||||||||||||| | || ||||| |||||||||
Sbjct: 193 tacttctcctttatgtagttcacagctccatacatgccagtcggaacgatataaagccaa 134
Query: 78 attgagtgcgccatctgtccaatttgcacgccattcctttgaaag 122
| |||| ||| |||||||||| | |||||||| | |||||||
Sbjct: 133 ttagagtttgcctgctgtccaattggtacgccatttcgttgaaag 89
>gb|D46605.1|D46605 RICS11375A Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA, mRNA sequence
Length = 364
Score = 48.1 bits (24), Expect = 0.006
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 591 tcataaccaannaatgctactatccttggctcat 624
|||||||||| | ||||||||||||||||||||
Sbjct: 326 tcataaccaagaagtgctactatccttggctcat 293
>gb|AU183651.1|AU183651 AU183651 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E31058, mRNA sequence
Length = 531
Score = 48.1 bits (24), Expect = 0.006
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 591 tcataaccaannaatgctactatccttggctcat 624
|||||||||| | ||||||||||||||||||||
Sbjct: 439 tcataaccaagaagtgctactatccttggctcat 406
>gb|CB643189.1|CB643189 OSJNEb03L22.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb03L22 5', mRNA sequence
Length = 760
Score = 48.1 bits (24), Expect = 0.006
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 591 tcataaccaannaatgctactatccttggctcat 624
|||||||||| | ||||||||||||||||||||
Sbjct: 718 tcataaccaagaagtgctactatccttggctcat 685
>gb|CB643857.1|CB643857 OSJNEb04M14.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb04M14 5', mRNA sequence
Length = 766
Score = 48.1 bits (24), Expect = 0.006
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 591 tcataaccaannaatgctactatccttggctcat 624
|||||||||| | ||||||||||||||||||||
Sbjct: 724 tcataaccaagaagtgctactatccttggctcat 691
>gb|CB654045.1|CB654045 OSJNEc05K05.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc05K05 5', mRNA sequence
Length = 794
Score = 48.1 bits (24), Expect = 0.006
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 591 tcataaccaannaatgctactatccttggctcat 624
|||||||||| | ||||||||||||||||||||
Sbjct: 715 tcataaccaagaagtgctactatccttggctcat 682
>gb|CB663657.1|CB663657 OSJNEd08O07.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd08O07 5', mRNA sequence
Length = 829
Score = 48.1 bits (24), Expect = 0.006
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 591 tcataaccaannaatgctactatccttggctcat 624
|||||||||| | ||||||||||||||||||||
Sbjct: 724 tcataaccaagaagtgctactatccttggctcat 691
>gb|CB668191.1|CB668191 OSJNEd15O19.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd15O19 5', mRNA sequence
Length = 702
Score = 48.1 bits (24), Expect = 0.006
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 591 tcataaccaannaatgctactatccttggctcat 624
|||||||||| | ||||||||||||||||||||
Sbjct: 683 tcataaccaagaagtgctactatccttggctcat 650
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 775,001
Number of Sequences: 438736
Number of extensions: 775001
Number of successful extensions: 3904
Number of sequences better than 0.5: 70
Number of HSP's better than 0.5 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3675
Number of HSP's gapped (non-prelim): 214
length of query: 696
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 675
effective length of database: 2,791,206,460
effective search space: 1884064360500
effective search space used: 1884064360500
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)