BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AF332176.2.1
(912 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK061423.1| Oryza sativa (japonica cultivar-group) cDNA... 287 5e-075
dbj|AK100959.1| Oryza sativa (japonica cultivar-group) cDNA... 204 6e-050
ref|NM_197700.1| Oryza sativa (japonica cultivar-group) bet... 204 6e-050
gb|CD670632.1|CD670632 OsMR047 5MT resistant rice mutant cD... 184 6e-044
dbj|AK105318.1| Oryza sativa (japonica cultivar-group) cDNA... 176 1e-041
gb|CF293831.1|CF293831 30DGS--03-C11.b1 Rice leaf plasmid c... 161 8e-037
gb|CV720797.1|CV720797 YBH--01-O04.b1 Rice before heading y... 161 8e-037
gb|CF328550.1|CF328550 NACL--03-I06.b1 Rice callus plasmid ... 159 3e-036
gb|CF276870.1|CF276870 14ETL--02-D03.b1 Rice etiolated leaf... 137 1e-029
gb|CF311548.1|CF311548 ABF--06-M21.g1 ABF3-overexpressing t... 137 1e-029
gb|CF333825.1|CF333825 JMT--02-N24.b1 AtJMT-overexpressing ... 137 1e-029
gb|AF485811.1| Oryza sativa BAC OSJNa0049F05, complete sequ... 137 1e-029
gb|AC118673.2| Genomic sequence for Oryza sativa, Nipponbar... 137 1e-029
gb|AC125411.1| Genomic sequence for Oryza sativa, Nipponbar... 137 1e-029
gb|AACV01005724.1| Oryza sativa (japonica cultivar-group) c... 137 1e-029
ref|NT_107183.1| Oryza sativa (japonica cultivar-group) 137 1e-029
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 137 1e-029
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 137 1e-029
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 137 1e-029
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 137 1e-029
gb|AU030829.1|AU030829 AU030829 Rice cDNA from immature lea... 135 5e-029
gb|CF311056.1|CF311056 ABF--06-C03.b1 ABF3-overexpressing t... 133 2e-028
gb|CF277133.1|CF277133 14ETL--02-I21.b1 Rice etiolated leaf... 131 7e-028
dbj|AK061498.1| Oryza sativa (japonica cultivar-group) cDNA... 127 1e-026
dbj|AK101728.1| Oryza sativa (japonica cultivar-group) cDNA... 127 1e-026
dbj|AK104197.1| Oryza sativa (japonica cultivar-group) cDNA... 127 1e-026
dbj|AK105799.1| Oryza sativa (japonica cultivar-group) cDNA... 127 1e-026
gb|AC037426.12| Oryza sativa chromosome 10 BAC OSJNBb0014I1... 127 1e-026
gb|AACV01022091.1| Oryza sativa (japonica cultivar-group) c... 127 1e-026
ref|NM_197698.1| Oryza sativa (japonica cultivar-group) bet... 127 1e-026
ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chr... 127 1e-026
gb|CH401254.1| Oryza sativa (japonica cultivar-group) chrom... 127 1e-026
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 127 1e-026
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 127 1e-026
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 127 1e-026
gb|AU029750.1|AU029750 AU029750 Rice panicle shorter than 3... 125 4e-026
gb|CF326079.1|CF326079 JMT1--05-A19.g1 AtJMT-overexpressing... 125 4e-026
gb|AU184077.1|AU184077 AU184077 Rice root Oryza sativa (jap... 121 7e-025
dbj|AK060096.1| Oryza sativa (japonica cultivar-group) cDNA... 121 7e-025
dbj|AK064012.1| Oryza sativa (japonica cultivar-group) cDNA... 121 7e-025
dbj|AK101357.1| Oryza sativa (japonica cultivar-group) cDNA... 121 7e-025
dbj|AK103929.1| Oryza sativa (japonica cultivar-group) cDNA... 121 7e-025
dbj|AK105981.1| Oryza sativa (japonica cultivar-group) cDNA... 121 7e-025
ref|NM_197701.1| Oryza sativa (japonica cultivar-group) bet... 121 7e-025
gb|AC069300.7| Oryza sativa chromosome 10 BAC OSJNBa0010C11... 119 3e-024
gb|C27175.1|C27175 C27175 Rice callus cDNA Oryza sativa (ja... 115 4e-023
gb|C98131.1|C98131 C98131 Rice callus Oryza sativa (japonic... 115 4e-023
gb|AU225903.1|AU225903 AU225903 Oryza sativa Koshihikari pi... 115 4e-023
dbj|AK101806.1| Oryza sativa (japonica cultivar-group) cDNA... 115 4e-023
gb|AACV01022092.1| Oryza sativa (japonica cultivar-group) c... 115 4e-023
gb|AU184759.1|AU184759 AU184759 Rice root Oryza sativa (jap... 111 7e-022
gb|AU198282.1|AU198282 AU198282 Rice green shoot Oryza sati... 111 7e-022
dbj|AK058895.1| Oryza sativa (japonica cultivar-group) cDNA... 111 7e-022
dbj|AK061068.1| Oryza sativa (japonica cultivar-group) cDNA... 111 7e-022
dbj|AK104128.1| Oryza sativa (japonica cultivar-group) cDNA... 111 7e-022
ref|NM_197699.1| Oryza sativa (japonica cultivar-group) bet... 111 7e-022
gb|C27500.1|C27500 C27500 Rice callus cDNA Oryza sativa (ja... 109 3e-021
gb|AU093543.1|AU093543 AU093543 Rice callus Oryza sativa (j... 109 3e-021
gb|AU225439.1|AU225439 AU225439 Oryza sativa Koshihikari pi... 107 1e-020
gb|CF332237.1|CF332237 NACL--08-K17.g1 Rice callus plasmid ... 107 1e-020
gb|CD670675.1|CD670675 OsMR090 5MT resistant rice mutant cD... 107 1e-020
gb|AU108787.1|AU108787 AU108787 Rice callus Oryza sativa (j... 105 4e-020
dbj|AK070972.1| Oryza sativa (japonica cultivar-group) cDNA... 101 7e-019
gb|CV722636.1|CV722636 root--01-B24.g1 Rice root lambda pha... 100 3e-018
gb|C24955.1|C24955 C24955 Rice green shoot Oryza sativa (ja... 98 1e-017
gb|CD670606.1|CD670606 OsMR021 5MT resistant rice mutant cD... 96 4e-017
gb|AU163761.1|AU163761 AU163761 Rice panicle at ripening st... 88 1e-014
gb|C28558.1|C28558 C28558 Rice callus cDNA Oryza sativa (ja... 86 4e-014
gb|AU062937.1|AU062937 AU062937 Rice callus Oryza sativa (j... 86 4e-014
gb|CF333826.1|CF333826 JMT--02-N24.g1 AtJMT-overexpressing ... 84 2e-013
gb|C19781.1|C19781 C19781 Rice panicle at ripening stage Or... 80 2e-012
gb|CZ552388.1|CZ552388 M0002054 AS_TRIM_TDNA_B1 Oryza sativ... 72 6e-010
gb|D39004.1|D39004 RICR0481A Rice root Oryza sativa (japoni... 72 6e-010
gb|C72255.1|C72255 C72255 Rice panicle at flowering stage O... 70 2e-009
dbj|AP003875.3| Oryza sativa (japonica cultivar-group) geno... 70 2e-009
gb|AACV01017536.1| Oryza sativa (japonica cultivar-group) c... 70 2e-009
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 70 2e-009
gb|CH401229.1| Oryza sativa (japonica cultivar-group) chrom... 70 2e-009
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 70 2e-009
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 70 2e-009
gb|AU165472.1|AU165472 AU165472 Rice panicle at flowering s... 66 4e-008
gb|AU181572.1|AU181572 AU181572 Rice callus (2001) Oryza sa... 64 1e-007
gb|AQ794914.1|AQ794914 nbxb0054A04f CUGI Rice BAC Library O... 62 6e-007
gb|D47446.1|D47446 RICS12935A Rice green shoot Oryza sativa... 62 6e-007
gb|D48730.1|D48730 RICS15119A Rice green shoot Oryza sativa... 62 6e-007
gb|C96991.1|C96991 C96991 Rice callus Oryza sativa (japonic... 62 6e-007
gb|AU068468.1|AU068468 AU068468 Rice callus Oryza sativa (j... 62 6e-007
gb|AU094457.1|AU094457 AU094457 Rice panicle at ripening st... 58 9e-006
gb|AU174046.1|AU174046 AU174046 Rice green shoot Oryza sati... 58 9e-006
emb|AL713930.5|CNS07YP7 Oryza sativa chromosome 3, . BAC OS... 58 9e-006
gb|AACV01007462.1| Oryza sativa (japonica cultivar-group) c... 58 9e-006
gb|CH401174.1| Oryza sativa (japonica cultivar-group) chrom... 58 9e-006
gb|D39144.1|D39144 RICR2519A Rice root Oryza sativa (japoni... 56 3e-005
gb|C72523.1|C72523 C72523 Rice panicle at flowering stage O... 56 3e-005
gb|C73067.1|C73067 C73067 Rice panicle at flowering stage O... 56 3e-005
gb|AU069738.1|AU069738 AU069738 Rice panicle at flowering s... 56 3e-005
gb|AU165471.1|AU165471 AU165471 Rice panicle at flowering s... 56 3e-005
gb|C72628.1|C72628 C72628 Rice panicle at flowering stage O... 54 1e-004
gb|C72838.1|C72838 C72838 Rice panicle at flowering stage O... 54 1e-004
gb|C93658.1|C93658 C93658 Rice panicle at flowering stage O... 54 1e-004
gb|C98558.1|C98558 C98558 Rice panicle at flowering stage O... 54 1e-004
gb|AU063778.1|AU063778 AU063778 Rice panicle at flowering s... 54 1e-004
gb|AU069701.1|AU069701 AU069701 Rice panicle at flowering s... 54 1e-004
gb|AU069778.1|AU069778 AU069778 Rice panicle at flowering s... 54 1e-004
gb|AU163433.1|AU163433 AU163433 Rice panicle at flowering s... 54 1e-004
gb|AU163583.1|AU163583 AU163583 Rice panicle at flowering s... 54 1e-004
gb|AU165452.1|AU165452 AU165452 Rice panicle at flowering s... 54 1e-004
gb|AU165487.1|AU165487 AU165487 Rice panicle at flowering s... 54 1e-004
gb|AU165516.1|AU165516 AU165516 Rice panicle at flowering s... 54 1e-004
gb|AU165567.1|AU165567 AU165567 Rice panicle at flowering s... 54 1e-004
dbj|AK070187.1| Oryza sativa (japonica cultivar-group) cDNA... 54 1e-004
dbj|AK099112.1| Oryza sativa (japonica cultivar-group) cDNA... 54 1e-004
gb|AC020666.8| Oryza sativa chromosome 10 BAC OSJNBa0082M15... 54 1e-004
dbj|AP005289.2| Oryza sativa (japonica cultivar-group) geno... 54 1e-004
gb|AACV01005076.1| Oryza sativa (japonica cultivar-group) c... 54 1e-004
gb|AACV01010248.1| Oryza sativa (japonica cultivar-group) c... 54 1e-004
gb|AACV01022050.1| Oryza sativa (japonica cultivar-group) c... 54 1e-004
ref|NM_197637.1| Oryza sativa (japonica cultivar-group) bet... 54 1e-004
ref|XM_467144.1| Oryza sativa (japonica cultivar-group), mRNA 54 1e-004
ref|XM_473433.1| Oryza sativa (japonica cultivar-group), p... 54 1e-004
ref|NT_079865.2| Oryza sativa (japonica cultivar-group) 54 1e-004
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 54 1e-004
dbj|AP005072.3| Oryza sativa (japonica cultivar-group) geno... 54 1e-004
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 54 1e-004
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 54 1e-004
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 54 1e-004
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 54 1e-004
emb|AL606633.3|OSJN00060 Oryza sativa genomic DNA, chromoso... 54 1e-004
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 54 1e-004
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 54 1e-004
gb|C72448.1|C72448 C72448 Rice panicle at flowering stage O... 52 5e-004
gb|C96739.1|C96739 C96739 Rice callus Oryza sativa (japonic... 52 5e-004
gb|C98677.1|C98677 C98677 Rice panicle at flowering stage O... 52 5e-004
gb|AU161321.1|AU161321 AU161321 Rice callus Oryza sativa (j... 52 5e-004
gb|AU182569.1|AU182569 AU182569 Rice panicle at flowering s... 52 5e-004
dbj|AK101313.1| Oryza sativa (japonica cultivar-group) cDNA... 52 5e-004
gb|AACV01011389.1| Oryza sativa (japonica cultivar-group) c... 52 5e-004
gb|AC119290.2| Oryza sativa (japonica cultivar-group) chrom... 52 5e-004
gb|CH401195.1| Oryza sativa (japonica cultivar-group) chrom... 52 5e-004
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 52 5e-004
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 52 5e-004
gb|C71918.1|C71918 C71918 Rice panicle at flowering stage O... 50 0.002
gb|C72059.1|C72059 C72059 Rice panicle at flowering stage O... 50 0.002
gb|C72914.1|C72914 C72914 Rice panicle at flowering stage O... 50 0.002
gb|AU063919.1|AU063919 AU063919 Rice panicle at flowering s... 50 0.002
gb|AU063925.1|AU063925 AU063925 Rice panicle at flowering s... 50 0.002
gb|AU063981.1|AU063981 AU063981 Rice panicle at flowering s... 50 0.002
gb|AU070620.1|AU070620 AU070620 Rice shoot Oryza sativa (ja... 50 0.002
gb|AU162185.1|AU162185 AU162185 Rice panicle at flowering s... 50 0.002
gb|AU165466.1|AU165466 AU165466 Rice panicle at flowering s... 50 0.002
gb|AU093947.2|AU093947 AU093947 Rice panicle at flowering s... 50 0.002
gb|BP184832.1|BP184832 BP184832 pNS rice panicle cDNA, flow... 50 0.002
dbj|AK072792.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.002
gb|AC107224.2| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
gb|AACV01005739.1| Oryza sativa (japonica cultivar-group) c... 50 0.002
gb|AACV01005740.1| Oryza sativa (japonica cultivar-group) c... 50 0.002
ref|NM_187639.1| Oryza sativa (japonica cultivar-group), p... 50 0.002
ref|NM_187641.1| Oryza sativa (japonica cultivar-group), p... 50 0.002
ref|NM_187643.1| Oryza sativa (japonica cultivar-group), p... 50 0.002
gb|D46769.1|D46769 RICS11648A Rice green shoot Oryza sativa... 48 0.008
gb|C20417.1|C20417 C20417 Rice panicle at ripening stage Or... 48 0.008
gb|C72196.1|C72196 C72196 Rice panicle at flowering stage O... 48 0.008
gb|AU091886.1|AU091886 AU091886 Rice panicle at flowering s... 48 0.008
gb|AU163608.1|AU163608 AU163608 Rice panicle at flowering s... 48 0.008
gb|AQ687517.1|AQ687517 nbxb0075G09f CUGI Rice BAC Library O... 46 0.033
gb|C72568.1|C72568 C72568 Rice panicle at flowering stage O... 46 0.033
gb|AU069706.1|AU069706 AU069706 Rice panicle at flowering s... 46 0.033
gb|AU094059.1|AU094059 AU094059 Rice panicle at flowering s... 46 0.033
gb|AU094597.1|AU094597 AU094597 Rice panicle at ripening st... 46 0.033
gb|AU163415.1|AU163415 AU163415 Rice panicle at flowering s... 46 0.033
gb|AU165453.1|AU165453 AU165453 Rice panicle at flowering s... 46 0.033
gb|AACV01002785.1| Oryza sativa (japonica cultivar-group) c... 46 0.033
gb|AACV01005737.1| Oryza sativa (japonica cultivar-group) c... 46 0.033
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 46 0.033
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 46 0.033
dbj|AP003227.3| Oryza sativa (japonica cultivar-group) geno... 46 0.033
dbj|AP003261.3| Oryza sativa (japonica cultivar-group) geno... 46 0.033
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.033
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.033
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 46 0.033
gb|D41180.1|D41180 RICS3505A Rice shoot Oryza sativa (japon... 44 0.13
gb|AU165517.1|AU165517 AU165517 Rice panicle at flowering s... 44 0.13
gb|CA755925.1|CA755925 BR030031000_PLATE_C12_91_097.ab1 OA ... 44 0.13
gb|CF280814.1|CF280814 14ETL--07-K04.b1 Rice etiolated leaf... 44 0.13
gb|CF280815.1|CF280815 14ETL--07-K04.g1 Rice etiolated leaf... 44 0.13
gb|CD670812.1|CD670812 OsMR231 5MT resistant rice mutant cD... 44 0.13
dbj|AK062405.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.13
dbj|AP005397.2| Oryza sativa (japonica cultivar-group) geno... 44 0.13
dbj|AP005093.3| Oryza sativa (japonica cultivar-group) geno... 44 0.13
gb|AACV01005627.1| Oryza sativa (japonica cultivar-group) c... 44 0.13
gb|AACV01019974.1| Oryza sativa (japonica cultivar-group) c... 44 0.13
ref|NT_107084.1| Oryza sativa (japonica cultivar-group) 44 0.13
ref|NT_107182.1| Oryza sativa (japonica cultivar-group) 44 0.13
dbj|AP004081.3| Oryza sativa (japonica cultivar-group) geno... 44 0.13
dbj|AP005303.3| Oryza sativa (japonica cultivar-group) geno... 44 0.13
gb|CH401242.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.13
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.13
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 44 0.13
>dbj|AK061423.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-G02, full
insert sequence
Length = 1027
Score = 287 bits (145), Expect = 5e-075
Identities = 358/429 (83%)
Strand = Plus / Plus
Query: 13 cggcggcgcgtgcggcttcaagggcgtgaacatgccacctttctcggcgatgacgtcgtg 72
|||||||||||| || |||||| |||||| |||| || |||||||| ||||| || ||
Sbjct: 191 cggcggcgcgtgtgggttcaagaatgtgaacctgccgcccttctcggccatgacttcctg 250
Query: 73 cggcaacgagccaatcttcaaggacggcaaaggatgcgggtcctgctaccagatccggtg 132
||| || ||||| |||||||||||||||| |||||||| ||||||||||||||||| ||
Sbjct: 251 cggaaatgagcctctcttcaaggacggcaagggatgcggctcctgctaccagatccgatg 310
Query: 133 caaggcccaccctgcgtgctccggcgtggcggagacggtgatcatcacggacatgaacta 192
| || ||||| || ||||| || | |||||||||||||||||||||||||||||||
Sbjct: 311 cgtggggcacccagcctgctcggggctcccggagacggtgatcatcacggacatgaacta 370
Query: 193 ctacccggtggccccctaccacttcgacctgagcggcactgccttcggggccatggcaaa 252
|||||| ||| | | |||||||||||||| |||||||| || ||||| |||||||| ||
Sbjct: 371 ctacccagtgtcgctgtaccacttcgacctcagcggcacggcgttcggcgccatggccaa 430
Query: 253 agacgagcacaacgacgagctaaggcacgcaggaatcatcgacatccagttcaagagggt 312
||| | | |||||||||||| | ||||| || ||||||||||||||||||| ||||||
Sbjct: 431 ggacaaccgcaacgacgagctccgccacgccggcatcatcgacatccagttcaggagggt 490
Query: 313 tccctgccagtaccctggtctgacggtgaccttccacatcgagcgcggctccaaccccaa 372
|| || ||||| || || ||||||||||| |||||| | |||| || || |||||
Sbjct: 491 gccttgtcagtatccagggctgacggtgacgttccacgtggagcaagggtcgaacccggt 550
Query: 373 ctacctggcggtgctggtggagtacgagaacggcgacggcgacgtggtgcaggtggacct 432
||| ||||| | |||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 551 gtacatggcgatactggtggagtacgagaacggggacggggacgtggtgcaggtggacct 610
Query: 433 gatggagtc 441
|||||||||
Sbjct: 611 gatggagtc 619
Score = 137 bits (69), Expect = 1e-029
Identities = 138/161 (85%)
Strand = Plus / Plus
Query: 488 gagtcctggggctccatatggaggatggacacccgccggccgctgcaagggcccttctcg 547
||||| ||||| || ||||||||| |||||||| || |||||||| |||||||||||
Sbjct: 678 gagtcgtggggatcgatatggaggctggacaccaaccacccgctgcaggggcccttctcc 737
Query: 548 ctgcgcgtcaccaacgagtccggcaagacgctggtggcggaccaggtcattccggcagac 607
|| ||| |||||||||||||||||||||| || | || || |||||||| || || |||
Sbjct: 738 ctccgcatcaccaacgagtccggcaagaccctcatcgccgatcaggtcatccccgccgac 797
Query: 608 tggcagcccgacaacgtctacagctccatcgtccagttcga 648
||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 798 tggcagcccaacaccgtctacagctccatcgtccagttcga 838
Score = 52.0 bits (26), Expect = 5e-004
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 867 atcgagacgtcgcttgtgacgtccgt 892
||||||||||||||||||||||||||
Sbjct: 910 atcgagacgtcgcttgtgacgtccgt 935
>dbj|AK100959.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023140O05, full
insert sequence
Length = 1313
Score = 204 bits (103), Expect = 6e-050
Identities = 316/387 (81%)
Strand = Plus / Plus
Query: 53 ttctcggcgatgacgtcgtgcggcaacgagccaatcttcaaggacggcaaaggatgcggg 112
|||||| ||||||| || |||||||||||||| |||||||||||||| || || || ||
Sbjct: 331 ttctcgtcgatgacctcctgcggcaacgagcctatcttcaaggacgggaagggctgtggc 390
Query: 113 tcctgctaccagatccggtgcaaggcccaccctgcgtgctccggcgtggcggagacggtg 172
|| ||||||||||| | ||| ||||||||| ||||||||| |||||||||||
Sbjct: 391 tcatgctaccagataagatgcgtcaaccaccctgcctgctccggcaacccggagacggtg 450
Query: 173 atcatcacggacatgaactactacccggtggccccctaccacttcgacctgagcggcact 232
|||||||| ||||||||||||||||| || || |||||||||||||||||||||||
Sbjct: 451 atcatcaccgacatgaactactaccccgtttccaagtaccacttcgacctgagcggcacg 510
Query: 233 gccttcggggccatggcaaaagacgagcacaacgacgagctaaggcacgcaggaatcatc 292
|| ||||| |||||||| || | ||| |||||| |||| | ||||| || ||||||
Sbjct: 511 gcgttcggcgccatggccaagccggggcagaacgaccagctccgccacgccggcatcatc 570
Query: 293 gacatccagttcaagagggttccctgccagtaccctggtctgacggtgaccttccacatc 352
|||||||||||||||||||| || ||| | | |||||| |||| |||||| |||||| |
Sbjct: 571 gacatccagttcaagagggtgccgtgcaacttccctgggctgaaggtgacgttccacgtg 630
Query: 353 gagcgcggctccaaccccaactacctggcggtgctggtggagtacgagaacggcgacggc 412
||| || || ||||| ||| | ||||||||||| ||||||||| |||||||||||
Sbjct: 631 gaggaggggtcgaacccggtgtacttcgcggtgctggttgagtacgaggacggcgacggc 690
Query: 413 gacgtggtgcaggtggacctgatggag 439
||||||||||||||||| || ||||||
Sbjct: 691 gacgtggtgcaggtggatctcatggag 717
Score = 58.0 bits (29), Expect = 9e-006
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 538 gcccttctcgctgcgcgtcaccaacgagtccggcaag 574
|||||||||||| ||| ||||||||||||||||||||
Sbjct: 798 gcccttctcgctccgcatcaccaacgagtccggcaag 834
>ref|NM_197700.1| Oryza sativa (japonica cultivar-group) beta-expansin EXPB3
(OSJNBb0014I11.1), mRNA
Length = 904
Score = 204 bits (103), Expect = 6e-050
Identities = 316/387 (81%)
Strand = Plus / Plus
Query: 53 ttctcggcgatgacgtcgtgcggcaacgagccaatcttcaaggacggcaaaggatgcggg 112
|||||| ||||||| || |||||||||||||| |||||||||||||| || || || ||
Sbjct: 320 ttctcgtcgatgacctcctgcggcaacgagcctatcttcaaggacgggaagggctgtggc 379
Query: 113 tcctgctaccagatccggtgcaaggcccaccctgcgtgctccggcgtggcggagacggtg 172
|| ||||||||||| | ||| ||||||||| ||||||||| |||||||||||
Sbjct: 380 tcatgctaccagataagatgcgtcaaccaccctgcctgctccggcaacccggagacggtg 439
Query: 173 atcatcacggacatgaactactacccggtggccccctaccacttcgacctgagcggcact 232
|||||||| ||||||||||||||||| || || |||||||||||||||||||||||
Sbjct: 440 atcatcaccgacatgaactactaccccgtttccaagtaccacttcgacctgagcggcacg 499
Query: 233 gccttcggggccatggcaaaagacgagcacaacgacgagctaaggcacgcaggaatcatc 292
|| ||||| |||||||| || | ||| |||||| |||| | ||||| || ||||||
Sbjct: 500 gcgttcggcgccatggccaagccggggcagaacgaccagctccgccacgccggcatcatc 559
Query: 293 gacatccagttcaagagggttccctgccagtaccctggtctgacggtgaccttccacatc 352
|||||||||||||||||||| || ||| | | |||||| |||| |||||| |||||| |
Sbjct: 560 gacatccagttcaagagggtgccgtgcaacttccctgggctgaaggtgacgttccacgtg 619
Query: 353 gagcgcggctccaaccccaactacctggcggtgctggtggagtacgagaacggcgacggc 412
||| || || ||||| ||| | ||||||||||| ||||||||| |||||||||||
Sbjct: 620 gaggaggggtcgaacccggtgtacttcgcggtgctggttgagtacgaggacggcgacggc 679
Query: 413 gacgtggtgcaggtggacctgatggag 439
||||||||||||||||| || ||||||
Sbjct: 680 gacgtggtgcaggtggatctcatggag 706
Score = 58.0 bits (29), Expect = 9e-006
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 538 gcccttctcgctgcgcgtcaccaacgagtccggcaag 574
|||||||||||| ||| ||||||||||||||||||||
Sbjct: 787 gcccttctcgctccgcatcaccaacgagtccggcaag 823
>gb|CD670632.1|CD670632 OsMR047 5MT resistant rice mutant cDNA library Oryza sativa
(japonica cultivar-group) cDNA, mRNA sequence
Length = 699
Score = 184 bits (93), Expect = 6e-044
Identities = 239/288 (82%)
Strand = Plus / Plus
Query: 13 cggcggcgcgtgcggcttcaagggcgtgaacatgccacctttctcggcgatgacgtcgtg 72
|||||||||||| || |||||| |||||| |||| || |||||||| ||||| || ||
Sbjct: 274 cggcggcgcgtgtgggttcaagaatgtgaacctgccgcccttctcggccatgacttcctg 333
Query: 73 cggcaacgagccaatcttcaaggacggcaaaggatgcgggtcctgctaccagatccggtg 132
||| || ||||| |||||||||||||||| |||||||| ||||||||||||||||| ||
Sbjct: 334 cggaaatgagcctctcttcaaggacggcaagggatgcggctcctgctaccagatccgatg 393
Query: 133 caaggcccaccctgcgtgctccggcgtggcggagacggtgatcatcacggacatgaacta 192
| || ||||| || ||||| || | |||||||||||||||||||||||||||||||
Sbjct: 394 cgtggggcacccagcctgctcggggctcccggagacggtgatcatcacggacatgaacta 453
Query: 193 ctacccggtggccccctaccacttcgacctgagcggcactgccttcggggccatggcaaa 252
|||||| ||| | | |||||||||||||| |||||||| || ||||| |||||||| ||
Sbjct: 454 ctacccagtgtcgctgtaccacttcgacctcagcggcacggcgttcggcgccatggccaa 513
Query: 253 agacgagcacaacgacgagctaaggcacgcaggaatcatcgacatcca 300
||| | | |||||||||||| | ||||| | ||||||||||||||
Sbjct: 514 ngacaaccgcaacgacgagctccgccacgcccgcatcatcgacatcca 561
Score = 71.9 bits (36), Expect = 6e-010
Identities = 52/56 (92%), Gaps = 1/56 (1%)
Strand = Plus / Plus
Query: 386 ctggtggagtacgagaacggcgacggcgacgtggtgcaggtggacctgatggagtc 441
|||||||||||||| ||||| ||||| |||||| ||||||||||||||||||||||
Sbjct: 634 ctggtggagtacgaaaacggggacggggacgtg-tgcaggtggacctgatggagtc 688
>dbj|AK105318.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-117-F11, full
insert sequence
Length = 1031
Score = 176 bits (89), Expect = 1e-041
Identities = 248/301 (82%)
Strand = Plus / Plus
Query: 139 ccaccctgcgtgctccggcgtggcggagacggtgatcatcacggacatgaactactaccc 198
||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct: 161 ccaccctgcctgctccggcaacccggagacggtgatcatcaccgacatgaactactaccc 220
Query: 199 ggtggccccctaccacttcgacctgagcggcactgccttcggggccatggcaaaagacga 258
|| || ||||||||||||||||||||||| || ||||| |||||||| || |
Sbjct: 221 cgtttccaagtaccacttcgacctgagcggcacggcgttcggcgccatggccaagccggg 280
Query: 259 gcacaacgacgagctaaggcacgcaggaatcatcgacatccagttcaagagggttccctg 318
||| |||||| |||| | ||||| || |||||||||||||||||||||||||| || ||
Sbjct: 281 gcagaacgaccagctccgccacgccggcatcatcgacatccagttcaagagggtgccgtg 340
Query: 319 ccagtaccctggtctgacggtgaccttccacatcgagcgcggctccaaccccaactacct 378
| | | |||||| |||| |||||| |||||| | ||| || || ||||| ||| |
Sbjct: 341 caacttccctgggctgaaggtgacgttccacgtggaggaggggtcgaacccggtgtactt 400
Query: 379 ggcggtgctggtggagtacgagaacggcgacggcgacgtggtgcaggtggacctgatgga 438
||||||||||| ||||||||| |||||||||||||||||||||||||||| || |||||
Sbjct: 401 cgcggtgctggttgagtacgaggacggcgacggcgacgtggtgcaggtggatctcatgga 460
Query: 439 g 439
|
Sbjct: 461 g 461
Score = 58.0 bits (29), Expect = 9e-006
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 538 gcccttctcgctgcgcgtcaccaacgagtccggcaag 574
|||||||||||| ||| ||||||||||||||||||||
Sbjct: 542 gcccttctcgctccgcatcaccaacgagtccggcaag 578
>gb|CF293831.1|CF293831 30DGS--03-C11.b1 Rice leaf plasmid cDNA library I (30DGS) Oryza
sativa (japonica cultivar-group) cDNA clone
30DGS--03-C11, mRNA sequence
Length = 632
Score = 161 bits (81), Expect = 8e-037
Identities = 243/297 (81%)
Strand = Plus / Plus
Query: 53 ttctcggcgatgacgtcgtgcggcaacgagccaatcttcaaggacggcaaaggatgcggg 112
|||||| ||||||| || |||||||||||||| |||||||||||||| || || || ||
Sbjct: 332 ttctcgtcgatgacctcctgcggcaacgagcctatcttcaaggacgggaagggctgtggc 391
Query: 113 tcctgctaccagatccggtgcaaggcccaccctgcgtgctccggcgtggcggagacggtg 172
|| ||||||||||| | ||| ||||||||| ||||||||| |||||||||||
Sbjct: 392 tcatgctaccagataagatgcgtcaaccaccctgcctgctccggcaacccggagacggtg 451
Query: 173 atcatcacggacatgaactactacccggtggccccctaccacttcgacctgagcggcact 232
|||||||| ||||||||||||||||| || || |||||||||||||||||||||||
Sbjct: 452 atcatcaccgacatgaactactaccccgtttccaagtaccacttcgacctgagcggcacg 511
Query: 233 gccttcggggccatggcaaaagacgagcacaacgacgagctaaggcacgcaggaatcatc 292
|| ||||| |||||||| || | ||| |||||| |||| | ||||| || ||||||
Sbjct: 512 gcgttcggcgccatggccaagccggggcagaacgaccagctccgccacgccggcatcatc 571
Query: 293 gacatccagttcaagagggttccctgccagtaccctggtctgacggtgaccttccac 349
|||||||||||||||||||| || ||| | | |||||| |||| |||||| ||||||
Sbjct: 572 gacatccagttcaagagggtgccgtgcaacttccctgggctgaaggtgacgttccac 628
>gb|CV720797.1|CV720797 YBH--01-O04.b1 Rice before heading yeast two hybrid lambda phage
cDNA library (YBH) Oryza sativa (japonica
cultivar-group) cDNA clone YBH--01-O04, mRNA sequence
Length = 453
Score = 161 bits (81), Expect = 8e-037
Identities = 243/297 (81%)
Strand = Plus / Plus
Query: 53 ttctcggcgatgacgtcgtgcggcaacgagccaatcttcaaggacggcaaaggatgcggg 112
|||||| ||||||| || |||||||||||||| |||||||||||||| || || || ||
Sbjct: 148 ttctcgtcgatgacctcctgcggcaacgagcctatcttcaaggacgggaagggctgtggc 207
Query: 113 tcctgctaccagatccggtgcaaggcccaccctgcgtgctccggcgtggcggagacggtg 172
|| ||||||||||| | ||| ||||||||| ||||||||| |||||||||||
Sbjct: 208 tcatgctaccagataagatgcgtcaaccaccctgcctgctccggcaacccggagacggtg 267
Query: 173 atcatcacggacatgaactactacccggtggccccctaccacttcgacctgagcggcact 232
|||||||| ||||||||||||||||| || || |||||||||||||||||||||||
Sbjct: 268 atcatcaccgacatgaactactaccccgtttccaagtaccacttcgacctgagcggcacg 327
Query: 233 gccttcggggccatggcaaaagacgagcacaacgacgagctaaggcacgcaggaatcatc 292
|| ||||| |||||||| || | ||| |||||| |||| | ||||| || ||||||
Sbjct: 328 gcgttcggcgccatggccaagccggggcagaacgaccagctccgccacgccggcatcatc 387
Query: 293 gacatccagttcaagagggttccctgccagtaccctggtctgacggtgaccttccac 349
|||||||||||||||||||| || ||| | | |||||| |||| |||||| ||||||
Sbjct: 388 gacatccagttcaagagggtgccgtgcaacttccctgggctgaaggtgacgttccac 444
>gb|CF328550.1|CF328550 NACL--03-I06.b1 Rice callus plasmid cDNA library (NACL) Oryza
sativa (japonica cultivar-group) cDNA clone
NACL--03-I06, mRNA sequence
Length = 632
Score = 159 bits (80), Expect = 3e-036
Identities = 245/300 (81%)
Strand = Plus / Plus
Query: 50 cctttctcggcgatgacgtcgtgcggcaacgagccaatcttcaaggacggcaaaggatgc 109
||||||||| ||||||| || |||||||||||||| |||||||||||||| || || ||
Sbjct: 328 cctttctcgtcgatgacctcctgcggcaacgagcctatcttcaaggacgggaagggctgt 387
Query: 110 gggtcctgctaccagatccggtgcaaggcccaccctgcgtgctccggcgtggcggagacg 169
|| || ||||||||||| | ||| ||||||||| ||||||||| ||||||||
Sbjct: 388 ggctcatgctaccagataagatgcgtcaaccaccctgcctgctccggcaacccggagacg 447
Query: 170 gtgatcatcacggacatgaactactacccggtggccccctaccacttcgacctgagcggc 229
||||||||||| ||||||||||||||||| || || |||||||||||||||||||||
Sbjct: 448 gtgatcatcaccgacatgaactactaccccgtttccaagtaccacttcgacctgagcggc 507
Query: 230 actgccttcggggccatggcaaaagacgagcacaacgacgagctaaggcacgcaggaatc 289
|| || ||||| |||||||| || | ||| |||||| |||| | ||||| || |||
Sbjct: 508 acggcgttcggcgccatggccaagccggggcagaacgaccagctccgccacgccggcatc 567
Query: 290 atcgacatccagttcaagagggttccctgccagtaccctggtctgacggtgaccttccac 349
||||||||||||||||||||||| || ||| | |||||| |||| |||||| ||||||
Sbjct: 568 atcgacatccagttcaagagggtgccgtgcagcttccctgggctgaaggtgacgttccac 627
>gb|CF276870.1|CF276870 14ETL--02-D03.b1 Rice etiolated leaf plasmid cDNA library (14ETL)
Oryza sativa (japonica cultivar-group) cDNA clone
14ETL--02-D03, mRNA sequence
Length = 581
Score = 137 bits (69), Expect = 1e-029
Identities = 207/253 (81%)
Strand = Plus / Plus
Query: 53 ttctcggcgatgacgtcgtgcggcaacgagccaatcttcaaggacggcaaaggatgcggg 112
|||||| ||||||| || |||||||||||||| |||||||||||||| || || || ||
Sbjct: 329 ttctcgtcgatgacctcctgcggcaacgagcctatcttcaaggacgggaagggctgtggc 388
Query: 113 tcctgctaccagatccggtgcaaggcccaccctgcgtgctccggcgtggcggagacggtg 172
|| ||||||||||| | ||| ||||||||| ||||||||| |||||||||||
Sbjct: 389 tcatgctaccagataagatgcgtcaaccaccctgcctgctccggcaacccggagacggtg 448
Query: 173 atcatcacggacatgaactactacccggtggccccctaccacttcgacctgagcggcact 232
|||||||| ||||||||||||||||| || || |||||||||||||||||||||||
Sbjct: 449 atcatcaccgacatgaactactaccccgtttccaagtaccacttcgacctgagcggcacg 508
Query: 233 gccttcggggccatggcaaaagacgagcacaacgacgagctaaggcacgcaggaatcatc 292
|| ||||| |||||||| || | ||| |||||| |||| | ||||| || ||||||
Sbjct: 509 gcgttcggcgccatggccaagccggggcagaacgaccagctccgccacgccggcatcatc 568
Query: 293 gacatccagttca 305
|||||||||||||
Sbjct: 569 gacatccagttca 581
>gb|CF311548.1|CF311548 ABF--06-M21.g1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--06-M21, mRNA sequence
Length = 583
Score = 137 bits (69), Expect = 1e-029
Identities = 207/253 (81%)
Strand = Plus / Plus
Query: 53 ttctcggcgatgacgtcgtgcggcaacgagccaatcttcaaggacggcaaaggatgcggg 112
|||||| ||||||| || |||||||||||||| |||||||||||||| || || || ||
Sbjct: 331 ttctcgtcgatgacctcctgcggcaacgagcctatcttcaaggacgggaagggctgtggc 390
Query: 113 tcctgctaccagatccggtgcaaggcccaccctgcgtgctccggcgtggcggagacggtg 172
|| ||||||||||| | ||| ||||||||| ||||||||| |||||||||||
Sbjct: 391 tcatgctaccagataagatgcgtcaaccaccctgcctgctccggcaacccggagacggtg 450
Query: 173 atcatcacggacatgaactactacccggtggccccctaccacttcgacctgagcggcact 232
|||||||| ||||||||||||||||| || || |||||||||||||||||||||||
Sbjct: 451 atcatcaccgacatgaactactaccccgtttccaagtaccacttcgacctgagcggcacg 510
Query: 233 gccttcggggccatggcaaaagacgagcacaacgacgagctaaggcacgcaggaatcatc 292
|| ||||| |||||||| || | ||| |||||| |||| | ||||| || ||||||
Sbjct: 511 gcgttcggcgccatggccaagccggggcagaacgaccagctccgccacgccggcatcatc 570
Query: 293 gacatccagttca 305
|||||||||||||
Sbjct: 571 gacatccagttca 583
>gb|CF333825.1|CF333825 JMT--02-N24.b1 AtJMT-overexpressing transgenic rice plasmid cDNA
library (JMT) Oryza sativa (japonica cultivar-group)
cDNA clone JMT--02-N24, mRNA sequence
Length = 577
Score = 137 bits (69), Expect = 1e-029
Identities = 207/253 (81%)
Strand = Plus / Plus
Query: 53 ttctcggcgatgacgtcgtgcggcaacgagccaatcttcaaggacggcaaaggatgcggg 112
|||||| ||||||| || |||||||||||||| |||||||||||||| || || || ||
Sbjct: 325 ttctcgtcgatgacctcctgcggcaacgagcctatcttcaaggacgggaagggctgtggc 384
Query: 113 tcctgctaccagatccggtgcaaggcccaccctgcgtgctccggcgtggcggagacggtg 172
|| ||||||||||| | ||| ||||||||| ||||||||| |||||||||||
Sbjct: 385 tcatgctaccagataagatgcgtcaaccaccctgcctgctccggcaacccggagacggtg 444
Query: 173 atcatcacggacatgaactactacccggtggccccctaccacttcgacctgagcggcact 232
|||||||| ||||||||||||||||| || || |||||||||||||||||||||||
Sbjct: 445 atcatcaccgacatgaactactaccccgtttccaagtaccacttcgacctgagcggcacg 504
Query: 233 gccttcggggccatggcaaaagacgagcacaacgacgagctaaggcacgcaggaatcatc 292
|| ||||| |||||||| || | ||| |||||| |||| | ||||| || ||||||
Sbjct: 505 gcgttcggcgccatggccaagccggggcagaacgaccagctccgccacgccggcatcatc 564
Query: 293 gacatccagttca 305
|||||||||||||
Sbjct: 565 gacatccagttca 577
>gb|AF485811.1| Oryza sativa BAC OSJNa0049F05, complete sequence
Length = 162241
Score = 137 bits (69), Expect = 1e-029
Identities = 129/149 (86%)
Strand = Plus / Minus
Query: 162 cggagacggtgatcatcacggacatgaactactacccggtggccccctaccacttcgacc 221
||||||||||||||||||||||||||||||||||||| ||| | | |||||||||||||
Sbjct: 94062 cggagacggtgatcatcacggacatgaactactacccagtgtcgctgtaccacttcgacc 94003
Query: 222 tgagcggcactgccttcggggccatggcaaaagacgagcacaacgacgagctaaggcacg 281
| |||||||| || ||||| |||||||| || ||| | | |||||||||||| | ||||
Sbjct: 94002 tcagcggcacggcgttcggcgccatggccaaggacaaccgcaacgacgagctccgccacg 93943
Query: 282 caggaatcatcgacatccagttcaagagg 310
| || ||||||||||||||||||| ||||
Sbjct: 93942 ccggcatcatcgacatccagttcaggagg 93914
Score = 137 bits (69), Expect = 1e-029
Identities = 138/161 (85%)
Strand = Plus / Minus
Query: 488 gagtcctggggctccatatggaggatggacacccgccggccgctgcaagggcccttctcg 547
||||| ||||| || ||||||||| |||||||| || |||||||| |||||||||||
Sbjct: 93400 gagtcgtggggatcgatatggaggctggacaccaaccacccgctgcaggggcccttctcc 93341
Query: 548 ctgcgcgtcaccaacgagtccggcaagacgctggtggcggaccaggtcattccggcagac 607
|| ||| |||||||||||||||||||||| || | || || |||||||| || || |||
Sbjct: 93340 ctccgcatcaccaacgagtccggcaagaccctcatcgccgatcaggtcatccccgccgac 93281
Query: 608 tggcagcccgacaacgtctacagctccatcgtccagttcga 648
||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 93280 tggcagcccaacaccgtctacagctccatcgtccagttcga 93240
Score = 101 bits (51), Expect = 7e-019
Identities = 57/59 (96%)
Strand = Plus / Plus
Query: 374 tacctggcggtgctggtggagtacgagaacggcgacggcgacgtggtgcaggtggacct 432
|||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct: 104740 tacctggcggtgctggtggagtacgagaacggcgacggagacgtggcgcaggtggacct 104798
Score = 95.6 bits (48), Expect = 4e-017
Identities = 54/56 (96%)
Strand = Plus / Minus
Query: 386 ctggtggagtacgagaacggcgacggcgacgtggtgcaggtggacctgatggagtc 441
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 93514 ctggtggagtacgagaacggggacggggacgtggtgcaggtggacctgatggagtc 93459
Score = 87.7 bits (44), Expect = 1e-014
Identities = 95/112 (84%)
Strand = Plus / Minus
Query: 13 cggcggcgcgtgcggcttcaagggcgtgaacatgccacctttctcggcgatgacgtcgtg 72
|||||||||||| || |||||| |||||| |||| || |||||||| ||||| || ||
Sbjct: 94434 cggcggcgcgtgtgggttcaagaatgtgaacctgccgcccttctcggccatgacttcctg 94375
Query: 73 cggcaacgagccaatcttcaaggacggcaaaggatgcgggtcctgctaccag 124
||| || ||||| |||||||||||||||| |||||||| ||||||||||||
Sbjct: 94374 cggaaatgagcctctcttcaaggacggcaagggatgcggctcctgctaccag 94323
Score = 52.0 bits (26), Expect = 5e-004
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 867 atcgagacgtcgcttgtgacgtccgt 892
||||||||||||||||||||||||||
Sbjct: 93168 atcgagacgtcgcttgtgacgtccgt 93143
Score = 44.1 bits (22), Expect = 0.13
Identities = 55/66 (83%)
Strand = Plus / Plus
Query: 175 catcacggacatgaactactacccggtggccccctaccacttcgacctgagcggcactgc 234
|||||| ||||||||||||| ||| | ||| |||||||||||||| ||||||| ||
Sbjct: 104541 catcaccgacatgaactacttccccctctcccagtaccacttcgacctcagcggcatcgc 104600
Query: 235 cttcgg 240
||||||
Sbjct: 104601 cttcgg 104606
Score = 44.1 bits (22), Expect = 0.13
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 61 gatgacgtcgtgcggcaacgagccaatcttcaaggacggcaaaggatgcgggtcctgcta 120
||||||||||||||| ||| |||| | | ||||| |||||| || ||||| ||||||||
Sbjct: 104427 gatgacgtcgtgcgggaaccagccgctgtacaagggcggcaagggctgcggctcctgcta 104486
Query: 121 cc 122
||
Sbjct: 104487 cc 104488
>gb|AC118673.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
OSJNBb0080O10, from chromosome 3, complete sequence
Length = 127917
Score = 137 bits (69), Expect = 1e-029
Identities = 138/161 (85%)
Strand = Plus / Plus
Query: 488 gagtcctggggctccatatggaggatggacacccgccggccgctgcaagggcccttctcg 547
||||| ||||| || ||||||||| |||||||| || |||||||| |||||||||||
Sbjct: 6333 gagtcgtggggatcgatatggaggctggacaccaaccacccgctgcaggggcccttctcc 6392
Query: 548 ctgcgcgtcaccaacgagtccggcaagacgctggtggcggaccaggtcattccggcagac 607
|| ||| |||||||||||||||||||||| || | || || |||||||| || || |||
Sbjct: 6393 ctccgcatcaccaacgagtccggcaagaccctcatcgccgatcaggtcatccccgccgac 6452
Query: 608 tggcagcccgacaacgtctacagctccatcgtccagttcga 648
||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 6453 tggcagcccaacaccgtctacagctccatcgtccagttcga 6493
Score = 137 bits (69), Expect = 1e-029
Identities = 129/149 (86%)
Strand = Plus / Plus
Query: 162 cggagacggtgatcatcacggacatgaactactacccggtggccccctaccacttcgacc 221
||||||||||||||||||||||||||||||||||||| ||| | | |||||||||||||
Sbjct: 5671 cggagacggtgatcatcacggacatgaactactacccagtgtcgctgtaccacttcgacc 5730
Query: 222 tgagcggcactgccttcggggccatggcaaaagacgagcacaacgacgagctaaggcacg 281
| |||||||| || ||||| |||||||| || ||| | | |||||||||||| | ||||
Sbjct: 5731 tcagcggcacggcgttcggcgccatggccaaggacaaccgcaacgacgagctccgccacg 5790
Query: 282 caggaatcatcgacatccagttcaagagg 310
| || ||||||||||||||||||| ||||
Sbjct: 5791 ccggcatcatcgacatccagttcaggagg 5819
Score = 95.6 bits (48), Expect = 4e-017
Identities = 54/56 (96%)
Strand = Plus / Plus
Query: 386 ctggtggagtacgagaacggcgacggcgacgtggtgcaggtggacctgatggagtc 441
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 6219 ctggtggagtacgagaacggggacggggacgtggtgcaggtggacctgatggagtc 6274
Score = 87.7 bits (44), Expect = 1e-014
Identities = 95/112 (84%)
Strand = Plus / Plus
Query: 13 cggcggcgcgtgcggcttcaagggcgtgaacatgccacctttctcggcgatgacgtcgtg 72
|||||||||||| || |||||| |||||| |||| || |||||||| ||||| || ||
Sbjct: 5299 cggcggcgcgtgtgggttcaagaatgtgaacctgccgcccttctcggccatgacttcctg 5358
Query: 73 cggcaacgagccaatcttcaaggacggcaaaggatgcgggtcctgctaccag 124
||| || ||||| |||||||||||||||| |||||||| ||||||||||||
Sbjct: 5359 cggaaatgagcctctcttcaaggacggcaagggatgcggctcctgctaccag 5410
Score = 52.0 bits (26), Expect = 5e-004
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 867 atcgagacgtcgcttgtgacgtccgt 892
||||||||||||||||||||||||||
Sbjct: 6565 atcgagacgtcgcttgtgacgtccgt 6590
>gb|AC125411.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
OSJNAb0079B22, from chromosome 3, complete sequence
Length = 156933
Score = 137 bits (69), Expect = 1e-029
Identities = 138/161 (85%)
Strand = Plus / Plus
Query: 488 gagtcctggggctccatatggaggatggacacccgccggccgctgcaagggcccttctcg 547
||||| ||||| || ||||||||| |||||||| || |||||||| |||||||||||
Sbjct: 103266 gagtcgtggggatcgatatggaggctggacaccaaccacccgctgcaggggcccttctcc 103325
Query: 548 ctgcgcgtcaccaacgagtccggcaagacgctggtggcggaccaggtcattccggcagac 607
|| ||| |||||||||||||||||||||| || | || || |||||||| || || |||
Sbjct: 103326 ctccgcatcaccaacgagtccggcaagaccctcatcgccgatcaggtcatccccgccgac 103385
Query: 608 tggcagcccgacaacgtctacagctccatcgtccagttcga 648
||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 103386 tggcagcccaacaccgtctacagctccatcgtccagttcga 103426
Score = 137 bits (69), Expect = 1e-029
Identities = 129/149 (86%)
Strand = Plus / Plus
Query: 162 cggagacggtgatcatcacggacatgaactactacccggtggccccctaccacttcgacc 221
||||||||||||||||||||||||||||||||||||| ||| | | |||||||||||||
Sbjct: 102604 cggagacggtgatcatcacggacatgaactactacccagtgtcgctgtaccacttcgacc 102663
Query: 222 tgagcggcactgccttcggggccatggcaaaagacgagcacaacgacgagctaaggcacg 281
| |||||||| || ||||| |||||||| || ||| | | |||||||||||| | ||||
Sbjct: 102664 tcagcggcacggcgttcggcgccatggccaaggacaaccgcaacgacgagctccgccacg 102723
Query: 282 caggaatcatcgacatccagttcaagagg 310
| || ||||||||||||||||||| ||||
Sbjct: 102724 ccggcatcatcgacatccagttcaggagg 102752
Score = 101 bits (51), Expect = 7e-019
Identities = 57/59 (96%)
Strand = Plus / Minus
Query: 374 tacctggcggtgctggtggagtacgagaacggcgacggcgacgtggtgcaggtggacct 432
|||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct: 91926 tacctggcggtgctggtggagtacgagaacggcgacggagacgtggcgcaggtggacct 91868
Score = 95.6 bits (48), Expect = 4e-017
Identities = 54/56 (96%)
Strand = Plus / Plus
Query: 386 ctggtggagtacgagaacggcgacggcgacgtggtgcaggtggacctgatggagtc 441
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 103152 ctggtggagtacgagaacggggacggggacgtggtgcaggtggacctgatggagtc 103207
Score = 87.7 bits (44), Expect = 1e-014
Identities = 95/112 (84%)
Strand = Plus / Plus
Query: 13 cggcggcgcgtgcggcttcaagggcgtgaacatgccacctttctcggcgatgacgtcgtg 72
|||||||||||| || |||||| |||||| |||| || |||||||| ||||| || ||
Sbjct: 102232 cggcggcgcgtgtgggttcaagaatgtgaacctgccgcccttctcggccatgacttcctg 102291
Query: 73 cggcaacgagccaatcttcaaggacggcaaaggatgcgggtcctgctaccag 124
||| || ||||| |||||||||||||||| |||||||| ||||||||||||
Sbjct: 102292 cggaaatgagcctctcttcaaggacggcaagggatgcggctcctgctaccag 102343
Score = 52.0 bits (26), Expect = 5e-004
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 867 atcgagacgtcgcttgtgacgtccgt 892
||||||||||||||||||||||||||
Sbjct: 103498 atcgagacgtcgcttgtgacgtccgt 103523
Score = 44.1 bits (22), Expect = 0.13
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 61 gatgacgtcgtgcggcaacgagccaatcttcaaggacggcaaaggatgcgggtcctgcta 120
||||||||||||||| ||| |||| | | ||||| |||||| || ||||| ||||||||
Sbjct: 92239 gatgacgtcgtgcgggaaccagccgctgtacaagggcggcaagggctgcggctcctgcta 92180
Query: 121 cc 122
||
Sbjct: 92179 cc 92178
Score = 44.1 bits (22), Expect = 0.13
Identities = 55/66 (83%)
Strand = Plus / Minus
Query: 175 catcacggacatgaactactacccggtggccccctaccacttcgacctgagcggcactgc 234
|||||| ||||||||||||| ||| | ||| |||||||||||||| ||||||| ||
Sbjct: 92125 catcaccgacatgaactacttccccctctcccagtaccacttcgacctcagcggcatcgc 92066
Query: 235 cttcgg 240
||||||
Sbjct: 92065 cttcgg 92060
>gb|AACV01005724.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg005724, whole
genome shotgun sequence
Length = 15116
Score = 137 bits (69), Expect = 1e-029
Identities = 129/149 (86%)
Strand = Plus / Minus
Query: 162 cggagacggtgatcatcacggacatgaactactacccggtggccccctaccacttcgacc 221
||||||||||||||||||||||||||||||||||||| ||| | | |||||||||||||
Sbjct: 4387 cggagacggtgatcatcacggacatgaactactacccagtgtcgctgtaccacttcgacc 4328
Query: 222 tgagcggcactgccttcggggccatggcaaaagacgagcacaacgacgagctaaggcacg 281
| |||||||| || ||||| |||||||| || ||| | | |||||||||||| | ||||
Sbjct: 4327 tcagcggcacggcgttcggcgccatggccaaggacaaccgcaacgacgagctccgccacg 4268
Query: 282 caggaatcatcgacatccagttcaagagg 310
| || ||||||||||||||||||| ||||
Sbjct: 4267 ccggcatcatcgacatccagttcaggagg 4239
Score = 137 bits (69), Expect = 1e-029
Identities = 138/161 (85%)
Strand = Plus / Minus
Query: 488 gagtcctggggctccatatggaggatggacacccgccggccgctgcaagggcccttctcg 547
||||| ||||| || ||||||||| |||||||| || |||||||| |||||||||||
Sbjct: 3725 gagtcgtggggatcgatatggaggctggacaccaaccacccgctgcaggggcccttctcc 3666
Query: 548 ctgcgcgtcaccaacgagtccggcaagacgctggtggcggaccaggtcattccggcagac 607
|| ||| |||||||||||||||||||||| || | || || |||||||| || || |||
Sbjct: 3665 ctccgcatcaccaacgagtccggcaagaccctcatcgccgatcaggtcatccccgccgac 3606
Query: 608 tggcagcccgacaacgtctacagctccatcgtccagttcga 648
||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 3605 tggcagcccaacaccgtctacagctccatcgtccagttcga 3565
Score = 95.6 bits (48), Expect = 4e-017
Identities = 54/56 (96%)
Strand = Plus / Minus
Query: 386 ctggtggagtacgagaacggcgacggcgacgtggtgcaggtggacctgatggagtc 441
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 3839 ctggtggagtacgagaacggggacggggacgtggtgcaggtggacctgatggagtc 3784
Score = 87.7 bits (44), Expect = 1e-014
Identities = 95/112 (84%)
Strand = Plus / Minus
Query: 13 cggcggcgcgtgcggcttcaagggcgtgaacatgccacctttctcggcgatgacgtcgtg 72
|||||||||||| || |||||| |||||| |||| || |||||||| ||||| || ||
Sbjct: 4759 cggcggcgcgtgtgggttcaagaatgtgaacctgccgcccttctcggccatgacttcctg 4700
Query: 73 cggcaacgagccaatcttcaaggacggcaaaggatgcgggtcctgctaccag 124
||| || ||||| |||||||||||||||| |||||||| ||||||||||||
Sbjct: 4699 cggaaatgagcctctcttcaaggacggcaagggatgcggctcctgctaccag 4648
Score = 52.0 bits (26), Expect = 5e-004
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 867 atcgagacgtcgcttgtgacgtccgt 892
||||||||||||||||||||||||||
Sbjct: 3493 atcgagacgtcgcttgtgacgtccgt 3468
Score = 44.1 bits (22), Expect = 0.13
Identities = 55/66 (83%)
Strand = Plus / Plus
Query: 175 catcacggacatgaactactacccggtggccccctaccacttcgacctgagcggcactgc 234
|||||| ||||||||||||| ||| | ||| |||||||||||||| ||||||| ||
Sbjct: 14866 catcaccgacatgaactacttccccctctcccagtaccacttcgacctcagcggcatcgc 14925
Query: 235 cttcgg 240
||||||
Sbjct: 14926 cttcgg 14931
Score = 44.1 bits (22), Expect = 0.13
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 61 gatgacgtcgtgcggcaacgagccaatcttcaaggacggcaaaggatgcgggtcctgcta 120
||||||||||||||| ||| |||| | | ||||| |||||| || ||||| ||||||||
Sbjct: 14752 gatgacgtcgtgcgggaaccagccgctgtacaagggcggcaagggctgcggctcctgcta 14811
Query: 121 cc 122
||
Sbjct: 14812 cc 14813
>ref|NT_107183.1| Oryza sativa (japonica cultivar-group)
Length = 1680144
Score = 137 bits (69), Expect = 1e-029
Identities = 138/161 (85%)
Strand = Plus / Plus
Query: 488 gagtcctggggctccatatggaggatggacacccgccggccgctgcaagggcccttctcg 547
||||| ||||| || ||||||||| |||||||| || |||||||| |||||||||||
Sbjct: 169266 gagtcgtggggatcgatatggaggctggacaccaaccacccgctgcaggggcccttctcc 169325
Query: 548 ctgcgcgtcaccaacgagtccggcaagacgctggtggcggaccaggtcattccggcagac 607
|| ||| |||||||||||||||||||||| || | || || |||||||| || || |||
Sbjct: 169326 ctccgcatcaccaacgagtccggcaagaccctcatcgccgatcaggtcatccccgccgac 169385
Query: 608 tggcagcccgacaacgtctacagctccatcgtccagttcga 648
||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 169386 tggcagcccaacaccgtctacagctccatcgtccagttcga 169426
Score = 137 bits (69), Expect = 1e-029
Identities = 129/149 (86%)
Strand = Plus / Plus
Query: 162 cggagacggtgatcatcacggacatgaactactacccggtggccccctaccacttcgacc 221
||||||||||||||||||||||||||||||||||||| ||| | | |||||||||||||
Sbjct: 168604 cggagacggtgatcatcacggacatgaactactacccagtgtcgctgtaccacttcgacc 168663
Query: 222 tgagcggcactgccttcggggccatggcaaaagacgagcacaacgacgagctaaggcacg 281
| |||||||| || ||||| |||||||| || ||| | | |||||||||||| | ||||
Sbjct: 168664 tcagcggcacggcgttcggcgccatggccaaggacaaccgcaacgacgagctccgccacg 168723
Query: 282 caggaatcatcgacatccagttcaagagg 310
| || ||||||||||||||||||| ||||
Sbjct: 168724 ccggcatcatcgacatccagttcaggagg 168752
Score = 101 bits (51), Expect = 7e-019
Identities = 57/59 (96%)
Strand = Plus / Minus
Query: 374 tacctggcggtgctggtggagtacgagaacggcgacggcgacgtggtgcaggtggacct 432
|||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct: 157926 tacctggcggtgctggtggagtacgagaacggcgacggagacgtggcgcaggtggacct 157868
Score = 95.6 bits (48), Expect = 4e-017
Identities = 54/56 (96%)
Strand = Plus / Plus
Query: 386 ctggtggagtacgagaacggcgacggcgacgtggtgcaggtggacctgatggagtc 441
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 169152 ctggtggagtacgagaacggggacggggacgtggtgcaggtggacctgatggagtc 169207
Score = 87.7 bits (44), Expect = 1e-014
Identities = 95/112 (84%)
Strand = Plus / Plus
Query: 13 cggcggcgcgtgcggcttcaagggcgtgaacatgccacctttctcggcgatgacgtcgtg 72
|||||||||||| || |||||| |||||| |||| || |||||||| ||||| || ||
Sbjct: 168232 cggcggcgcgtgtgggttcaagaatgtgaacctgccgcccttctcggccatgacttcctg 168291
Query: 73 cggcaacgagccaatcttcaaggacggcaaaggatgcgggtcctgctaccag 124
||| || ||||| |||||||||||||||| |||||||| ||||||||||||
Sbjct: 168292 cggaaatgagcctctcttcaaggacggcaagggatgcggctcctgctaccag 168343
Score = 52.0 bits (26), Expect = 5e-004
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 867 atcgagacgtcgcttgtgacgtccgt 892
||||||||||||||||||||||||||
Sbjct: 169498 atcgagacgtcgcttgtgacgtccgt 169523
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 71 tgcggcaacgagccaatcttcaaggacggcaaaggatgcgg 111
||||||||||| || ||||||||||||||||| || |||||
Sbjct: 380368 tgcggcaacgaccccatcttcaaggacggcaagggctgcgg 380328
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 71 tgcggcaacgagccaatcttcaaggacggcaaaggatgcgg 111
||||||||||| || ||||||||||||||||| || |||||
Sbjct: 370153 tgcggcaacgaccccatcttcaaggacggcaagggctgcgg 370193
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 71 tgcggcaacgagccaatcttcaaggacggcaaaggatgcgg 111
||||||||||| || ||||||||||||||||| || |||||
Sbjct: 365490 tgcggcaacgaccccatcttcaaggacggcaagggctgcgg 365530
Score = 46.1 bits (23), Expect = 0.033
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 341 accttccacatcgagcgcggctccaaccccaactacctggcggtgct 387
||||||||||||||| | |||||||||||||||||| ||| ||||
Sbjct: 380095 accttccacatcgagaaggcctccaaccccaactaccttgcgctgct 380049
Score = 46.1 bits (23), Expect = 0.033
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 341 accttccacatcgagcgcggctccaaccccaactacctggcggtgct 387
||||||||||||||| | |||||||||||||||||| ||| ||||
Sbjct: 365763 accttccacatcgagaaggcctccaaccccaactaccttgcgctgct 365809
Score = 44.1 bits (22), Expect = 0.13
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 341 accttccacatcgagcgcggctccaaccccaactacct 378
||||||||||||||| | ||||||||||||||||||
Sbjct: 370426 accttccacatcgagaaggcctccaaccccaactacct 370463
Score = 44.1 bits (22), Expect = 0.13
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 61 gatgacgtcgtgcggcaacgagccaatcttcaaggacggcaaaggatgcgggtcctgcta 120
||||||||||||||| ||| |||| | | ||||| |||||| || ||||| ||||||||
Sbjct: 158239 gatgacgtcgtgcgggaaccagccgctgtacaagggcggcaagggctgcggctcctgcta 158180
Query: 121 cc 122
||
Sbjct: 158179 cc 158178
Score = 44.1 bits (22), Expect = 0.13
Identities = 55/66 (83%)
Strand = Plus / Minus
Query: 175 catcacggacatgaactactacccggtggccccctaccacttcgacctgagcggcactgc 234
|||||| ||||||||||||| ||| | ||| |||||||||||||| ||||||| ||
Sbjct: 158125 catcaccgacatgaactacttccccctctcccagtaccacttcgacctcagcggcatcgc 158066
Query: 235 cttcgg 240
||||||
Sbjct: 158065 cttcgg 158060
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010
genomic scaffold, whole genome shotgun sequence
Length = 13858245
Score = 137 bits (69), Expect = 1e-029
Identities = 138/161 (85%)
Strand = Plus / Plus
Query: 488 gagtcctggggctccatatggaggatggacacccgccggccgctgcaagggcccttctcg 547
||||| ||||| || ||||||||| |||||||| || |||||||| |||||||||||
Sbjct: 198504 gagtcgtggggatcgatatggaggctggacaccaaccacccgctgcaggggcccttctcc 198563
Query: 548 ctgcgcgtcaccaacgagtccggcaagacgctggtggcggaccaggtcattccggcagac 607
|| ||| |||||||||||||||||||||| || | || || |||||||| || || |||
Sbjct: 198564 ctccgcatcaccaacgagtccggcaagaccctcatcgccgatcaggtcatccccgccgac 198623
Query: 608 tggcagcccgacaacgtctacagctccatcgtccagttcga 648
||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 198624 tggcagcccaacaccgtctacagctccatcgtccagttcga 198664
Score = 137 bits (69), Expect = 1e-029
Identities = 129/149 (86%)
Strand = Plus / Plus
Query: 162 cggagacggtgatcatcacggacatgaactactacccggtggccccctaccacttcgacc 221
||||||||||||||||||||||||||||||||||||| ||| | | |||||||||||||
Sbjct: 197842 cggagacggtgatcatcacggacatgaactactacccagtgtcgctgtaccacttcgacc 197901
Query: 222 tgagcggcactgccttcggggccatggcaaaagacgagcacaacgacgagctaaggcacg 281
| |||||||| || ||||| |||||||| || ||| | | |||||||||||| | ||||
Sbjct: 197902 tcagcggcacggcgttcggcgccatggccaaggacaaccgcaacgacgagctccgccacg 197961
Query: 282 caggaatcatcgacatccagttcaagagg 310
| || ||||||||||||||||||| ||||
Sbjct: 197962 ccggcatcatcgacatccagttcaggagg 197990
Score = 95.6 bits (48), Expect = 4e-017
Identities = 54/56 (96%)
Strand = Plus / Plus
Query: 386 ctggtggagtacgagaacggcgacggcgacgtggtgcaggtggacctgatggagtc 441
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 198390 ctggtggagtacgagaacggggacggggacgtggtgcaggtggacctgatggagtc 198445
Score = 87.7 bits (44), Expect = 1e-014
Identities = 95/112 (84%)
Strand = Plus / Plus
Query: 13 cggcggcgcgtgcggcttcaagggcgtgaacatgccacctttctcggcgatgacgtcgtg 72
|||||||||||| || |||||| |||||| |||| || |||||||| ||||| || ||
Sbjct: 197470 cggcggcgcgtgtgggttcaagaatgtgaacctgccgcccttctcggccatgacttcctg 197529
Query: 73 cggcaacgagccaatcttcaaggacggcaaaggatgcgggtcctgctaccag 124
||| || ||||| |||||||||||||||| |||||||| ||||||||||||
Sbjct: 197530 cggaaatgagcctctcttcaaggacggcaagggatgcggctcctgctaccag 197581
Score = 52.0 bits (26), Expect = 5e-004
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 867 atcgagacgtcgcttgtgacgtccgt 892
||||||||||||||||||||||||||
Sbjct: 198736 atcgagacgtcgcttgtgacgtccgt 198761
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 71 tgcggcaacgagccaatcttcaaggacggcaaaggatgcgg 111
||||||||||| || ||||||||||||||||| || |||||
Sbjct: 397113 tgcggcaacgaccccatcttcaaggacggcaagggctgcgg 397073
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 71 tgcggcaacgagccaatcttcaaggacggcaaaggatgcgg 111
||||||||||| || ||||||||||||||||| || |||||
Sbjct: 393192 tgcggcaacgaccccatcttcaaggacggcaagggctgcgg 393152
Score = 46.1 bits (23), Expect = 0.033
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 341 accttccacatcgagcgcggctccaaccccaactacctggcggtgct 387
||||||||||||||| | |||||||||||||||||| ||| ||||
Sbjct: 396840 accttccacatcgagaaggcctccaaccccaactaccttgcgctgct 396794
Score = 46.1 bits (23), Expect = 0.033
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 341 accttccacatcgagcgcggctccaaccccaactacctggcggtgct 387
||||||||||||||| | |||||||||||||||||| ||| ||||
Sbjct: 383542 accttccacatcgagaaggcctccaaccccaactaccttgcgctgct 383496
Score = 44.1 bits (22), Expect = 0.13
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 341 accttccacatcgagcgcggctccaaccccaactacct 378
||||||||||||||| | ||||||||||||||||||
Sbjct: 392919 accttccacatcgagaaggcctccaaccccaactacct 392882
Score = 44.1 bits (22), Expect = 0.13
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 61 gatgacgtcgtgcggcaacgagccaatcttcaaggacggcaaaggatgcgggtcctgcta 120
||||||||||||||| ||| |||| | | ||||| |||||| || ||||| ||||||||
Sbjct: 187477 gatgacgtcgtgcgggaaccagccgctgtacaagggcggcaagggctgcggctcctgcta 187418
Query: 121 cc 122
||
Sbjct: 187417 cc 187416
Score = 44.1 bits (22), Expect = 0.13
Identities = 55/66 (83%)
Strand = Plus / Minus
Query: 175 catcacggacatgaactactacccggtggccccctaccacttcgacctgagcggcactgc 234
|||||| ||||||||||||| ||| | ||| |||||||||||||| ||||||| ||
Sbjct: 187363 catcaccgacatgaactacttccccctctcccagtaccacttcgacctcagcggcatcgc 187304
Query: 235 cttcgg 240
||||||
Sbjct: 187303 cttcgg 187298
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 137 bits (69), Expect = 1e-029
Identities = 138/161 (85%)
Strand = Plus / Plus
Query: 488 gagtcctggggctccatatggaggatggacacccgccggccgctgcaagggcccttctcg 547
||||| ||||| || ||||||||| |||||||| || |||||||| |||||||||||
Sbjct: 390866 gagtcgtggggatcgatatggaggctggacaccaaccacccgctgcaggggcccttctcc 390925
Query: 548 ctgcgcgtcaccaacgagtccggcaagacgctggtggcggaccaggtcattccggcagac 607
|| ||| |||||||||||||||||||||| || | || || |||||||| || || |||
Sbjct: 390926 ctccgcatcaccaacgagtccggcaagaccctcatcgccgatcaggtcatccccgccgac 390985
Query: 608 tggcagcccgacaacgtctacagctccatcgtccagttcga 648
||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 390986 tggcagcccaacaccgtctacagctccatcgtccagttcga 391026
Score = 137 bits (69), Expect = 1e-029
Identities = 129/149 (86%)
Strand = Plus / Plus
Query: 162 cggagacggtgatcatcacggacatgaactactacccggtggccccctaccacttcgacc 221
||||||||||||||||||||||||||||||||||||| ||| | | |||||||||||||
Sbjct: 390204 cggagacggtgatcatcacggacatgaactactacccagtgtcgctgtaccacttcgacc 390263
Query: 222 tgagcggcactgccttcggggccatggcaaaagacgagcacaacgacgagctaaggcacg 281
| |||||||| || ||||| |||||||| || ||| | | |||||||||||| | ||||
Sbjct: 390264 tcagcggcacggcgttcggcgccatggccaaggacaaccgcaacgacgagctccgccacg 390323
Query: 282 caggaatcatcgacatccagttcaagagg 310
| || ||||||||||||||||||| ||||
Sbjct: 390324 ccggcatcatcgacatccagttcaggagg 390352
Score = 95.6 bits (48), Expect = 4e-017
Identities = 54/56 (96%)
Strand = Plus / Plus
Query: 386 ctggtggagtacgagaacggcgacggcgacgtggtgcaggtggacctgatggagtc 441
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 390752 ctggtggagtacgagaacggggacggggacgtggtgcaggtggacctgatggagtc 390807
Score = 87.7 bits (44), Expect = 1e-014
Identities = 95/112 (84%)
Strand = Plus / Plus
Query: 13 cggcggcgcgtgcggcttcaagggcgtgaacatgccacctttctcggcgatgacgtcgtg 72
|||||||||||| || |||||| |||||| |||| || |||||||| ||||| || ||
Sbjct: 389832 cggcggcgcgtgtgggttcaagaatgtgaacctgccgcccttctcggccatgacttcctg 389891
Query: 73 cggcaacgagccaatcttcaaggacggcaaaggatgcgggtcctgctaccag 124
||| || ||||| |||||||||||||||| |||||||| ||||||||||||
Sbjct: 389892 cggaaatgagcctctcttcaaggacggcaagggatgcggctcctgctaccag 389943
Score = 58.0 bits (29), Expect = 9e-006
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 359 ggctccaaccccaactacctggcggtgctggtggagtacga 399
||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 25260340 ggctccaacccgaactacctggccctgctggtggagtacga 25260380
Score = 52.0 bits (26), Expect = 5e-004
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 867 atcgagacgtcgcttgtgacgtccgt 892
||||||||||||||||||||||||||
Sbjct: 391098 atcgagacgtcgcttgtgacgtccgt 391123
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 71 tgcggcaacgagccaatcttcaaggacggcaaaggatgcgg 111
||||||||||| || ||||||||||||||||| || |||||
Sbjct: 589475 tgcggcaacgaccccatcttcaaggacggcaagggctgcgg 589435
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 71 tgcggcaacgagccaatcttcaaggacggcaaaggatgcgg 111
||||||||||| || ||||||||||||||||| || |||||
Sbjct: 585554 tgcggcaacgaccccatcttcaaggacggcaagggctgcgg 585514
Score = 46.1 bits (23), Expect = 0.033
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 341 accttccacatcgagcgcggctccaaccccaactacctggcggtgct 387
||||||||||||||| | |||||||||||||||||| ||| ||||
Sbjct: 589202 accttccacatcgagaaggcctccaaccccaactaccttgcgctgct 589156
Score = 46.1 bits (23), Expect = 0.033
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 341 accttccacatcgagcgcggctccaaccccaactacctggcggtgct 387
||||||||||||||| | |||||||||||||||||| ||| ||||
Sbjct: 575904 accttccacatcgagaaggcctccaaccccaactaccttgcgctgct 575858
Score = 44.1 bits (22), Expect = 0.13
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 341 accttccacatcgagcgcggctccaaccccaactacct 378
||||||||||||||| | ||||||||||||||||||
Sbjct: 585281 accttccacatcgagaaggcctccaaccccaactacct 585244
Score = 44.1 bits (22), Expect = 0.13
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 61 gatgacgtcgtgcggcaacgagccaatcttcaaggacggcaaaggatgcgggtcctgcta 120
||||||||||||||| ||| |||| | | ||||| |||||| || ||||| ||||||||
Sbjct: 379839 gatgacgtcgtgcgggaaccagccgctgtacaagggcggcaagggctgcggctcctgcta 379780
Query: 121 cc 122
||
Sbjct: 379779 cc 379778
Score = 44.1 bits (22), Expect = 0.13
Identities = 55/66 (83%)
Strand = Plus / Minus
Query: 175 catcacggacatgaactactacccggtggccccctaccacttcgacctgagcggcactgc 234
|||||| ||||||||||||| ||| | ||| |||||||||||||| ||||||| ||
Sbjct: 379725 catcaccgacatgaactacttccccctctcccagtaccacttcgacctcagcggcatcgc 379666
Query: 235 cttcgg 240
||||||
Sbjct: 379665 cttcgg 379660
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3,
complete sequence
Length = 36192742
Score = 137 bits (69), Expect = 1e-029
Identities = 138/161 (85%)
Strand = Plus / Plus
Query: 488 gagtcctggggctccatatggaggatggacacccgccggccgctgcaagggcccttctcg 547
||||| ||||| || ||||||||| |||||||| || |||||||| |||||||||||
Sbjct: 169266 gagtcgtggggatcgatatggaggctggacaccaaccacccgctgcaggggcccttctcc 169325
Query: 548 ctgcgcgtcaccaacgagtccggcaagacgctggtggcggaccaggtcattccggcagac 607
|| ||| |||||||||||||||||||||| || | || || |||||||| || || |||
Sbjct: 169326 ctccgcatcaccaacgagtccggcaagaccctcatcgccgatcaggtcatccccgccgac 169385
Query: 608 tggcagcccgacaacgtctacagctccatcgtccagttcga 648
||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 169386 tggcagcccaacaccgtctacagctccatcgtccagttcga 169426
Score = 137 bits (69), Expect = 1e-029
Identities = 129/149 (86%)
Strand = Plus / Plus
Query: 162 cggagacggtgatcatcacggacatgaactactacccggtggccccctaccacttcgacc 221
||||||||||||||||||||||||||||||||||||| ||| | | |||||||||||||
Sbjct: 168604 cggagacggtgatcatcacggacatgaactactacccagtgtcgctgtaccacttcgacc 168663
Query: 222 tgagcggcactgccttcggggccatggcaaaagacgagcacaacgacgagctaaggcacg 281
| |||||||| || ||||| |||||||| || ||| | | |||||||||||| | ||||
Sbjct: 168664 tcagcggcacggcgttcggcgccatggccaaggacaaccgcaacgacgagctccgccacg 168723
Query: 282 caggaatcatcgacatccagttcaagagg 310
| || ||||||||||||||||||| ||||
Sbjct: 168724 ccggcatcatcgacatccagttcaggagg 168752
Score = 101 bits (51), Expect = 7e-019
Identities = 57/59 (96%)
Strand = Plus / Minus
Query: 374 tacctggcggtgctggtggagtacgagaacggcgacggcgacgtggtgcaggtggacct 432
|||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct: 157926 tacctggcggtgctggtggagtacgagaacggcgacggagacgtggcgcaggtggacct 157868
Score = 95.6 bits (48), Expect = 4e-017
Identities = 54/56 (96%)
Strand = Plus / Plus
Query: 386 ctggtggagtacgagaacggcgacggcgacgtggtgcaggtggacctgatggagtc 441
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 169152 ctggtggagtacgagaacggggacggggacgtggtgcaggtggacctgatggagtc 169207
Score = 87.7 bits (44), Expect = 1e-014
Identities = 95/112 (84%)
Strand = Plus / Plus
Query: 13 cggcggcgcgtgcggcttcaagggcgtgaacatgccacctttctcggcgatgacgtcgtg 72
|||||||||||| || |||||| |||||| |||| || |||||||| ||||| || ||
Sbjct: 168232 cggcggcgcgtgtgggttcaagaatgtgaacctgccgcccttctcggccatgacttcctg 168291
Query: 73 cggcaacgagccaatcttcaaggacggcaaaggatgcgggtcctgctaccag 124
||| || ||||| |||||||||||||||| |||||||| ||||||||||||
Sbjct: 168292 cggaaatgagcctctcttcaaggacggcaagggatgcggctcctgctaccag 168343
Score = 58.0 bits (29), Expect = 9e-006
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 359 ggctccaaccccaactacctggcggtgctggtggagtacga 399
||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 24702445 ggctccaacccgaactacctggccctgctggtggagtacga 24702485
Score = 52.0 bits (26), Expect = 5e-004
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 867 atcgagacgtcgcttgtgacgtccgt 892
||||||||||||||||||||||||||
Sbjct: 169498 atcgagacgtcgcttgtgacgtccgt 169523
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 71 tgcggcaacgagccaatcttcaaggacggcaaaggatgcgg 111
||||||||||| || ||||||||||||||||| || |||||
Sbjct: 380368 tgcggcaacgaccccatcttcaaggacggcaagggctgcgg 380328
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 71 tgcggcaacgagccaatcttcaaggacggcaaaggatgcgg 111
||||||||||| || ||||||||||||||||| || |||||
Sbjct: 370153 tgcggcaacgaccccatcttcaaggacggcaagggctgcgg 370193
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 71 tgcggcaacgagccaatcttcaaggacggcaaaggatgcgg 111
||||||||||| || ||||||||||||||||| || |||||
Sbjct: 365490 tgcggcaacgaccccatcttcaaggacggcaagggctgcgg 365530
Score = 46.1 bits (23), Expect = 0.033
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 341 accttccacatcgagcgcggctccaaccccaactacctggcggtgct 387
||||||||||||||| | |||||||||||||||||| ||| ||||
Sbjct: 380095 accttccacatcgagaaggcctccaaccccaactaccttgcgctgct 380049
Score = 46.1 bits (23), Expect = 0.033
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 341 accttccacatcgagcgcggctccaaccccaactacctggcggtgct 387
||||||||||||||| | |||||||||||||||||| ||| ||||
Sbjct: 365763 accttccacatcgagaaggcctccaaccccaactaccttgcgctgct 365809
Score = 44.1 bits (22), Expect = 0.13
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 341 accttccacatcgagcgcggctccaaccccaactacct 378
||||||||||||||| | ||||||||||||||||||
Sbjct: 370426 accttccacatcgagaaggcctccaaccccaactacct 370463
Score = 44.1 bits (22), Expect = 0.13
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 61 gatgacgtcgtgcggcaacgagccaatcttcaaggacggcaaaggatgcgggtcctgcta 120
||||||||||||||| ||| |||| | | ||||| |||||| || ||||| ||||||||
Sbjct: 158239 gatgacgtcgtgcgggaaccagccgctgtacaagggcggcaagggctgcggctcctgcta 158180
Query: 121 cc 122
||
Sbjct: 158179 cc 158178
Score = 44.1 bits (22), Expect = 0.13
Identities = 55/66 (83%)
Strand = Plus / Minus
Query: 175 catcacggacatgaactactacccggtggccccctaccacttcgacctgagcggcactgc 234
|||||| ||||||||||||| ||| | ||| |||||||||||||| ||||||| ||
Sbjct: 158125 catcaccgacatgaactacttccccctctcccagtaccacttcgacctcagcggcatcgc 158066
Query: 235 cttcgg 240
||||||
Sbjct: 158065 cttcgg 158060
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 137 bits (69), Expect = 1e-029
Identities = 138/161 (85%)
Strand = Plus / Plus
Query: 488 gagtcctggggctccatatggaggatggacacccgccggccgctgcaagggcccttctcg 547
||||| ||||| || ||||||||| |||||||| || |||||||| |||||||||||
Sbjct: 169266 gagtcgtggggatcgatatggaggctggacaccaaccacccgctgcaggggcccttctcc 169325
Query: 548 ctgcgcgtcaccaacgagtccggcaagacgctggtggcggaccaggtcattccggcagac 607
|| ||| |||||||||||||||||||||| || | || || |||||||| || || |||
Sbjct: 169326 ctccgcatcaccaacgagtccggcaagaccctcatcgccgatcaggtcatccccgccgac 169385
Query: 608 tggcagcccgacaacgtctacagctccatcgtccagttcga 648
||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 169386 tggcagcccaacaccgtctacagctccatcgtccagttcga 169426
Score = 137 bits (69), Expect = 1e-029
Identities = 129/149 (86%)
Strand = Plus / Plus
Query: 162 cggagacggtgatcatcacggacatgaactactacccggtggccccctaccacttcgacc 221
||||||||||||||||||||||||||||||||||||| ||| | | |||||||||||||
Sbjct: 168604 cggagacggtgatcatcacggacatgaactactacccagtgtcgctgtaccacttcgacc 168663
Query: 222 tgagcggcactgccttcggggccatggcaaaagacgagcacaacgacgagctaaggcacg 281
| |||||||| || ||||| |||||||| || ||| | | |||||||||||| | ||||
Sbjct: 168664 tcagcggcacggcgttcggcgccatggccaaggacaaccgcaacgacgagctccgccacg 168723
Query: 282 caggaatcatcgacatccagttcaagagg 310
| || ||||||||||||||||||| ||||
Sbjct: 168724 ccggcatcatcgacatccagttcaggagg 168752
Score = 101 bits (51), Expect = 7e-019
Identities = 57/59 (96%)
Strand = Plus / Minus
Query: 374 tacctggcggtgctggtggagtacgagaacggcgacggcgacgtggtgcaggtggacct 432
|||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct: 157926 tacctggcggtgctggtggagtacgagaacggcgacggagacgtggcgcaggtggacct 157868
Score = 95.6 bits (48), Expect = 4e-017
Identities = 54/56 (96%)
Strand = Plus / Plus
Query: 386 ctggtggagtacgagaacggcgacggcgacgtggtgcaggtggacctgatggagtc 441
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 169152 ctggtggagtacgagaacggggacggggacgtggtgcaggtggacctgatggagtc 169207
Score = 87.7 bits (44), Expect = 1e-014
Identities = 95/112 (84%)
Strand = Plus / Plus
Query: 13 cggcggcgcgtgcggcttcaagggcgtgaacatgccacctttctcggcgatgacgtcgtg 72
|||||||||||| || |||||| |||||| |||| || |||||||| ||||| || ||
Sbjct: 168232 cggcggcgcgtgtgggttcaagaatgtgaacctgccgcccttctcggccatgacttcctg 168291
Query: 73 cggcaacgagccaatcttcaaggacggcaaaggatgcgggtcctgctaccag 124
||| || ||||| |||||||||||||||| |||||||| ||||||||||||
Sbjct: 168292 cggaaatgagcctctcttcaaggacggcaagggatgcggctcctgctaccag 168343
Score = 52.0 bits (26), Expect = 5e-004
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 867 atcgagacgtcgcttgtgacgtccgt 892
||||||||||||||||||||||||||
Sbjct: 169498 atcgagacgtcgcttgtgacgtccgt 169523
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 71 tgcggcaacgagccaatcttcaaggacggcaaaggatgcgg 111
||||||||||| || ||||||||||||||||| || |||||
Sbjct: 380370 tgcggcaacgaccccatcttcaaggacggcaagggctgcgg 380330
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 71 tgcggcaacgagccaatcttcaaggacggcaaaggatgcgg 111
||||||||||| || ||||||||||||||||| || |||||
Sbjct: 370155 tgcggcaacgaccccatcttcaaggacggcaagggctgcgg 370195
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 71 tgcggcaacgagccaatcttcaaggacggcaaaggatgcgg 111
||||||||||| || ||||||||||||||||| || |||||
Sbjct: 365492 tgcggcaacgaccccatcttcaaggacggcaagggctgcgg 365532
Score = 46.1 bits (23), Expect = 0.033
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 341 accttccacatcgagcgcggctccaaccccaactacctggcggtgct 387
||||||||||||||| | |||||||||||||||||| ||| ||||
Sbjct: 380097 accttccacatcgagaaggcctccaaccccaactaccttgcgctgct 380051
Score = 46.1 bits (23), Expect = 0.033
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 341 accttccacatcgagcgcggctccaaccccaactacctggcggtgct 387
||||||||||||||| | |||||||||||||||||| ||| ||||
Sbjct: 365765 accttccacatcgagaaggcctccaaccccaactaccttgcgctgct 365811
Score = 44.1 bits (22), Expect = 0.13
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 341 accttccacatcgagcgcggctccaaccccaactacct 378
||||||||||||||| | ||||||||||||||||||
Sbjct: 370428 accttccacatcgagaaggcctccaaccccaactacct 370465
Score = 44.1 bits (22), Expect = 0.13
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 61 gatgacgtcgtgcggcaacgagccaatcttcaaggacggcaaaggatgcgggtcctgcta 120
||||||||||||||| ||| |||| | | ||||| |||||| || ||||| ||||||||
Sbjct: 158239 gatgacgtcgtgcgggaaccagccgctgtacaagggcggcaagggctgcggctcctgcta 158180
Query: 121 cc 122
||
Sbjct: 158179 cc 158178
Score = 44.1 bits (22), Expect = 0.13
Identities = 55/66 (83%)
Strand = Plus / Minus
Query: 175 catcacggacatgaactactacccggtggccccctaccacttcgacctgagcggcactgc 234
|||||| ||||||||||||| ||| | ||| |||||||||||||| ||||||| ||
Sbjct: 158125 catcaccgacatgaactacttccccctctcccagtaccacttcgacctcagcggcatcgc 158066
Query: 235 cttcgg 240
||||||
Sbjct: 158065 cttcgg 158060
>gb|AU030829.1|AU030829 AU030829 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E60311_1A, mRNA sequence
Length = 378
Score = 135 bits (68), Expect = 5e-029
Identities = 175/211 (82%)
Strand = Plus / Plus
Query: 139 ccaccctgcgtgctccggcgtggcggagacggtgatcatcacggacatgaactactaccc 198
||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct: 45 ccaccctgcctgctccggcaacccggagacggtgatcatcaccgacatgaactactaccc 104
Query: 199 ggtggccccctaccacttcgacctgagcggcactgccttcggggccatggcaaaagacga 258
|| || ||||||||||||||||||||||| || ||||| |||||||| || |
Sbjct: 105 cgtttccaagtaccacttcgacctgagcggcacggcgttcggcgccatggccaagccggg 164
Query: 259 gcacaacgacgagctaaggcacgcaggaatcatcgacatccagttcaagagggttccctg 318
||| |||||| |||| | ||||| || |||||||||||||||||||||||||| || ||
Sbjct: 165 gcagaacgaccagctccgccacgccggcatcatcgacatccagttcaagagggtgccgtg 224
Query: 319 ccagtaccctggtctgacggtgaccttccac 349
| | | |||||| |||| |||||| ||||||
Sbjct: 225 caanttccctgggctgaaggtgacgttccac 255
Score = 71.9 bits (36), Expect = 6e-010
Identities = 55/60 (91%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 380 gcggtgctgg-tggagtacgagaacggcgacggcgacgtggtgcaggtggacctgatgga 438
|||||||||| | ||||||||| |||||||||||||||||||||||||||| || |||||
Sbjct: 286 gcggtgctgggttgagtacgaggacggcgacggcgacgtggtgcaggtggatctcatgga 345
>gb|CF311056.1|CF311056 ABF--06-C03.b1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--06-C03, mRNA sequence
Length = 585
Score = 133 bits (67), Expect = 2e-028
Identities = 208/255 (81%)
Strand = Plus / Plus
Query: 53 ttctcggcgatgacgtcgtgcggcaacgagccaatcttcaaggacggcaaaggatgcggg 112
|||||| ||||||| || |||||||||||||| |||||||||||||| || || || ||
Sbjct: 331 ttctcgtcgatgacctcctgcggcaacgagcctatcttcaaggacgggaagggctgtggc 390
Query: 113 tcctgctaccagatccggtgcaaggcccaccctgcgtgctccggcgtggcggagacggtg 172
|| ||||||||||| | || ||||||||| ||||||||| |||||||||||
Sbjct: 391 tcatgctaccagataagatgtgtcaaccaccctgcctgctccggcaacccggagacggtg 450
Query: 173 atcatcacggacatgaactactacccggtggccccctaccacttcgacctgagcggcact 232
|||||||| ||||||||||||||||| || || |||||||||||||||||||||||
Sbjct: 451 atcatcaccgacatgaactactaccccgtttccaagtaccacttcgacctgagcggcacg 510
Query: 233 gccttcggggccatggcaaaagacgagcacaacgacgagctaaggcacgcaggaatcatc 292
|| ||||| |||||||| || | ||| |||||| |||| | ||||| || ||||||
Sbjct: 511 gcgttcggcgccatggccaagccggggcagaacgaccagctccgccacgccggcatcatc 570
Query: 293 gacatccagttcaag 307
|||||||||||||||
Sbjct: 571 gacatccagttcaag 585
>gb|CF277133.1|CF277133 14ETL--02-I21.b1 Rice etiolated leaf plasmid cDNA library (14ETL)
Oryza sativa (japonica cultivar-group) cDNA clone
14ETL--02-I21, mRNA sequence
Length = 602
Score = 131 bits (66), Expect = 7e-028
Identities = 204/250 (81%)
Strand = Plus / Plus
Query: 53 ttctcggcgatgacgtcgtgcggcaacgagccaatcttcaaggacggcaaaggatgcggg 112
|||||| ||||||| || |||||||||||||| |||||||||||||| || || || ||
Sbjct: 353 ttctcgtcgatgacctcctgcggcaacgagcctatcttcaaggacgggaagggctgtggc 412
Query: 113 tcctgctaccagatccggtgcaaggcccaccctgcgtgctccggcgtggcggagacggtg 172
|| ||||||||||| | ||| ||||||||| ||||||||| |||||||||||
Sbjct: 413 tcatgctaccagataagatgcgtcaaccaccctgcctgctccggcaacccggagacggtg 472
Query: 173 atcatcacggacatgaactactacccggtggccccctaccacttcgacctgagcggcact 232
|||||||| ||||||||||||||||| || || |||||||||||||||||||||||
Sbjct: 473 atcatcaccgacatgaactactaccccgtttccaagtaccacttcgacctgagcggcacg 532
Query: 233 gccttcggggccatggcaaaagacgagcacaacgacgagctaaggcacgcaggaatcatc 292
|| ||||| |||||||| || | ||| |||||| |||| | ||||| || ||||||
Sbjct: 533 gcgttcggcgccatggccaagccggggcagaacgaccagctccgccacgccggcatcatc 592
Query: 293 gacatccagt 302
||||||||||
Sbjct: 593 gacatccagt 602
>dbj|AK061498.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-D06, full
insert sequence
Length = 1259
Score = 127 bits (64), Expect = 1e-026
Identities = 226/280 (80%)
Strand = Plus / Plus
Query: 164 gagacggtgatcatcacggacatgaactactacccggtggccccctaccacttcgacctg 223
||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||
Sbjct: 449 gagacggtgatcatcaccgacatgaactactaccccgtggccaggtaccacttcgacctg 508
Query: 224 agcggcactgccttcggggccatggcaaaagacgagcacaacgacgagctaaggcacgca 283
|||||||| || ||||| |||||||| || | || ||||||| |||| | ||| |
Sbjct: 509 agcggcacggcgttcggcgccatggccaagccggggctcaacgacaagctccgccactcg 568
Query: 284 ggaatcatcgacatccagttcaagagggttccctgccagtaccctggtctgacggtgacc 343
|| ||||||||||||||||||| | | || |||||| | ||||| || || | | | | |
Sbjct: 569 ggcatcatcgacatccagttcaggcgcgtcccctgcaactacccgggcctcaagatcaac 628
Query: 344 ttccacatcgagcgcggctccaaccccaactacctggcggtgctggtggagtacgagaac 403
|||||| ||||| ||||||||||| ||| | || ||||| || ||||||||| ||
Sbjct: 629 ttccacgtcgaggagggctccaacccggtgtacttcgccgtgctcgtcgagtacgaggac 688
Query: 404 ggcgacggcgacgtggtgcaggtggacctgatggagtcca 443
|||||||||||| |||||||| ||||| ||||||||||
Sbjct: 689 ctcgacggcgacgtcgtgcaggtcgacctcatggagtcca 728
Score = 85.7 bits (43), Expect = 4e-014
Identities = 73/83 (87%)
Strand = Plus / Plus
Query: 53 ttctcggcgatgacgtcgtgcggcaacgagccaatcttcaaggacggcaaaggatgcggg 112
|||||| | ||||| || |||||||||||||| ||||||||||||||||| || |||||
Sbjct: 338 ttctcgtccatgacctcctgcggcaacgagcccatcttcaaggacggcaagggctgcggc 397
Query: 113 tcctgctaccagatccggtgcaa 135
|| |||||||||||| |||||||
Sbjct: 398 tcatgctaccagatcaggtgcaa 420
>dbj|AK101728.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033061F13, full
insert sequence
Length = 1263
Score = 127 bits (64), Expect = 1e-026
Identities = 226/280 (80%)
Strand = Plus / Plus
Query: 164 gagacggtgatcatcacggacatgaactactacccggtggccccctaccacttcgacctg 223
||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||
Sbjct: 455 gagacggtgatcatcaccgacatgaactactaccccgtggccaggtaccacttcgacctg 514
Query: 224 agcggcactgccttcggggccatggcaaaagacgagcacaacgacgagctaaggcacgca 283
|||||||| || ||||| |||||||| || | || ||||||| |||| | ||| |
Sbjct: 515 agcggcacggcgttcggcgccatggccaagccggggctcaacgacaagctccgccactcg 574
Query: 284 ggaatcatcgacatccagttcaagagggttccctgccagtaccctggtctgacggtgacc 343
|| ||||||||||||||||||| | | || |||||| | ||||| || || | | | | |
Sbjct: 575 ggcatcatcgacatccagttcaggcgcgtcccctgcaactacccgggcctcaagatcaac 634
Query: 344 ttccacatcgagcgcggctccaaccccaactacctggcggtgctggtggagtacgagaac 403
|||||| ||||| ||||||||||| ||| | || ||||| || ||||||||| ||
Sbjct: 635 ttccacgtcgaggagggctccaacccggtgtacttcgccgtgctcgtcgagtacgaggac 694
Query: 404 ggcgacggcgacgtggtgcaggtggacctgatggagtcca 443
|||||||||||| |||||||| ||||| ||||||||||
Sbjct: 695 ctcgacggcgacgtcgtgcaggtcgacctcatggagtcca 734
Score = 93.7 bits (47), Expect = 2e-016
Identities = 104/123 (84%)
Strand = Plus / Plus
Query: 13 cggcggcgcgtgcggcttcaagggcgtgaacatgccacctttctcggcgatgacgtcgtg 72
||||||||| ||||| |||||| ||||||| | ||| |||||| | ||||| || ||
Sbjct: 304 cggcggcgcttgcgggttcaagaacgtgaaccagtaaccattctcgtccatgacctcctg 363
Query: 73 cggcaacgagccaatcttcaaggacggcaaaggatgcgggtcctgctaccagatccggtg 132
|||||||||||| ||||||||||||||||| || ||||| || |||||||||||| ||||
Sbjct: 364 cggcaacgagcccatcttcaaggacggcaagggctgcggctcatgctaccagatcaggtg 423
Query: 133 caa 135
|||
Sbjct: 424 caa 426
>dbj|AK104197.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-A02, full
insert sequence
Length = 1257
Score = 127 bits (64), Expect = 1e-026
Identities = 226/280 (80%)
Strand = Plus / Plus
Query: 164 gagacggtgatcatcacggacatgaactactacccggtggccccctaccacttcgacctg 223
||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||
Sbjct: 449 gagacggtgatcatcaccgacatgaactactaccccgtggccaggtaccacttcgacctg 508
Query: 224 agcggcactgccttcggggccatggcaaaagacgagcacaacgacgagctaaggcacgca 283
|||||||| || ||||| |||||||| || | || ||||||| |||| | ||| |
Sbjct: 509 agcggcacggcgttcggcgccatggccaagccggggctcaacgacaagctccgccactcg 568
Query: 284 ggaatcatcgacatccagttcaagagggttccctgccagtaccctggtctgacggtgacc 343
|| ||||||||||||||||||| | | || |||||| | ||||| || || | | | | |
Sbjct: 569 ggcatcatcgacatccagttcaggcgcgtcccctgcaactacccgggcctcaagatcaac 628
Query: 344 ttccacatcgagcgcggctccaaccccaactacctggcggtgctggtggagtacgagaac 403
|||||| ||||| ||||||||||| ||| | || ||||| || ||||||||| ||
Sbjct: 629 ttccacgtcgaggagggctccaacccggtgtacttcgccgtgctcgtcgagtacgaggac 688
Query: 404 ggcgacggcgacgtggtgcaggtggacctgatggagtcca 443
|||||||||||| |||||||| ||||| ||||||||||
Sbjct: 689 ctcgacggcgacgtcgtgcaggtcgacctcatggagtcca 728
Score = 85.7 bits (43), Expect = 4e-014
Identities = 73/83 (87%)
Strand = Plus / Plus
Query: 53 ttctcggcgatgacgtcgtgcggcaacgagccaatcttcaaggacggcaaaggatgcggg 112
|||||| | ||||| || |||||||||||||| ||||||||||||||||| || |||||
Sbjct: 338 ttctcgtccatgacctcctgcggcaacgagcccatcttcaaggacggcaagggctgcggc 397
Query: 113 tcctgctaccagatccggtgcaa 135
|| |||||||||||| |||||||
Sbjct: 398 tcatgctaccagatcaggtgcaa 420
>dbj|AK105799.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-203-A09, full
insert sequence
Length = 1257
Score = 127 bits (64), Expect = 1e-026
Identities = 226/280 (80%)
Strand = Plus / Plus
Query: 164 gagacggtgatcatcacggacatgaactactacccggtggccccctaccacttcgacctg 223
||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||
Sbjct: 449 gagacggtgatcatcaccgacatgaactactaccccgtggccaggtaccacttcgacctg 508
Query: 224 agcggcactgccttcggggccatggcaaaagacgagcacaacgacgagctaaggcacgca 283
|||||||| || ||||| |||||||| || | || ||||||| |||| | ||| |
Sbjct: 509 agcggcacggcgttcggcgccatggccaagccggggctcaacgacaagctccgccactcg 568
Query: 284 ggaatcatcgacatccagttcaagagggttccctgccagtaccctggtctgacggtgacc 343
|| ||||||||||||||||||| | | || |||||| | ||||| || || | | | | |
Sbjct: 569 ggcatcatcgacatccagttcaggcgcgtcccctgcaactacccgggcctcaagatcaac 628
Query: 344 ttccacatcgagcgcggctccaaccccaactacctggcggtgctggtggagtacgagaac 403
|||||| ||||| ||||||||||| ||| | || ||||| || ||||||||| ||
Sbjct: 629 ttccacgtcgaggagggctccaacccggtgtacttcgccgtgctcgtcgagtacgaggac 688
Query: 404 ggcgacggcgacgtggtgcaggtggacctgatggagtcca 443
|||||||||||| |||||||| ||||| ||||||||||
Sbjct: 689 ctcgacggcgacgtcgtgcaggtcgacctcatggagtcca 728
Score = 85.7 bits (43), Expect = 4e-014
Identities = 73/83 (87%)
Strand = Plus / Plus
Query: 53 ttctcggcgatgacgtcgtgcggcaacgagccaatcttcaaggacggcaaaggatgcggg 112
|||||| | ||||| || |||||||||||||| ||||||||||||||||| || |||||
Sbjct: 338 ttctcgtccatgacctcctgcggcaacgagcccatcttcaaggacggcaagggctgcggc 397
Query: 113 tcctgctaccagatccggtgcaa 135
|| |||||||||||| |||||||
Sbjct: 398 tcatgctaccagatcaggtgcaa 420
>gb|AC037426.12| Oryza sativa chromosome 10 BAC OSJNBb0014I11 genomic sequence, complete
sequence
Length = 135510
Score = 127 bits (64), Expect = 1e-026
Identities = 226/280 (80%)
Strand = Plus / Plus
Query: 164 gagacggtgatcatcacggacatgaactactacccggtggccccctaccacttcgacctg 223
||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||
Sbjct: 22570 gagacggtgatcatcaccgacatgaactactaccccgtggccaggtaccacttcgacctg 22629
Query: 224 agcggcactgccttcggggccatggcaaaagacgagcacaacgacgagctaaggcacgca 283
|||||||| || ||||| |||||||| || | || ||||||| |||| | ||| |
Sbjct: 22630 agcggcacggcgttcggcgccatggccaagccggggctcaacgacaagctccgccactcg 22689
Query: 284 ggaatcatcgacatccagttcaagagggttccctgccagtaccctggtctgacggtgacc 343
|| ||||||||||||||||||| | | || |||||| | ||||| || || | | | | |
Sbjct: 22690 ggcatcatcgacatccagttcaggcgcgtcccctgcaactacccgggcctcaagatcaac 22749
Query: 344 ttccacatcgagcgcggctccaaccccaactacctggcggtgctggtggagtacgagaac 403
|||||| ||||| ||||||||||| ||| | || ||||| || ||||||||| ||
Sbjct: 22750 ttccacgtcgaggagggctccaacccggtgtacttcgccgtgctcgtcgagtacgaggac 22809
Query: 404 ggcgacggcgacgtggtgcaggtggacctgatggagtcca 443
|||||||||||| |||||||| ||||| ||||||||||
Sbjct: 22810 ctcgacggcgacgtcgtgcaggtcgacctcatggagtcca 22849
Score = 119 bits (60), Expect = 3e-024
Identities = 144/172 (83%)
Strand = Plus / Plus
Query: 139 ccaccctgcgtgctccggcgtggcggagacggtgatcatcacggacatgaactactaccc 198
||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct: 4468 ccaccctgcctgctccggcaacccggagacggtgatcatcaccgacatgaactactaccc 4527
Query: 199 ggtggccccctaccacttcgacctgagcggcactgccttcggggccatggcaaaagacga 258
|| || ||||||||||||||||||||||| || ||||| |||||||| || |
Sbjct: 4528 cgtttccaagtaccacttcgacctgagcggcacggcgttcggcgccatggccaagccggg 4587
Query: 259 gcacaacgacgagctaaggcacgcaggaatcatcgacatccagttcaagagg 310
||| |||||| |||| | ||||| || ||||||||||||||||||||||||
Sbjct: 4588 gcagaacgaccagctccgccacgccggcatcatcgacatccagttcaagagg 4639
Score = 111 bits (56), Expect = 7e-022
Identities = 77/84 (91%)
Strand = Plus / Plus
Query: 166 gacggtgatcatcacggacatgaactactacccggtggccccctaccacttcgacctgag 225
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct: 16713 gacggtgatcatcacggacatgaactactaccccgtggccaggtaccacttcgacctgag 16772
Query: 226 cggcactgccttcggggccatggc 249
|||||| || ||||| ||||||||
Sbjct: 16773 cggcacggcgttcggcgccatggc 16796
Score = 87.7 bits (44), Expect = 1e-014
Identities = 56/60 (93%)
Strand = Plus / Plus
Query: 380 gcggtgctggtggagtacgagaacggcgacggcgacgtggtgcaggtggacctgatggag 439
||||||||||| ||||||||| |||||||||||||||||||||||||||| || ||||||
Sbjct: 5054 gcggtgctggttgagtacgaggacggcgacggcgacgtggtgcaggtggatctcatggag 5113
Score = 71.9 bits (36), Expect = 6e-010
Identities = 63/72 (87%)
Strand = Plus / Plus
Query: 53 ttctcggcgatgacgtcgtgcggcaacgagccaatcttcaaggacggcaaaggatgcggg 112
|||||| | ||||| || |||||||||||||| ||||||||||||||||| || |||||
Sbjct: 22287 ttctcgtccatgacctcctgcggcaacgagcccatcttcaaggacggcaagggctgcggc 22346
Query: 113 tcctgctaccag 124
|| |||||||||
Sbjct: 22347 tcatgctaccag 22358
Score = 63.9 bits (32), Expect = 1e-007
Identities = 62/72 (86%)
Strand = Plus / Plus
Query: 53 ttctcggcgatgacgtcgtgcggcaacgagccaatcttcaaggacggcaaaggatgcggg 112
|||||| ||||||| || |||||||||||||| |||||||||||||| || || || ||
Sbjct: 4246 ttctcgtcgatgacctcctgcggcaacgagcctatcttcaaggacgggaagggctgtggc 4305
Query: 113 tcctgctaccag 124
|| |||||||||
Sbjct: 4306 tcatgctaccag 4317
Score = 58.0 bits (29), Expect = 9e-006
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 538 gcccttctcgctgcgcgtcaccaacgagtccggcaag 574
|||||||||||| ||| ||||||||||||||||||||
Sbjct: 5194 gcccttctcgctccgcatcaccaacgagtccggcaag 5230
>gb|AACV01022091.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg022091, whole
genome shotgun sequence
Length = 36005
Score = 127 bits (64), Expect = 1e-026
Identities = 226/280 (80%)
Strand = Plus / Plus
Query: 164 gagacggtgatcatcacggacatgaactactacccggtggccccctaccacttcgacctg 223
||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||
Sbjct: 21864 gagacggtgatcatcaccgacatgaactactaccccgtggccaggtaccacttcgacctg 21923
Query: 224 agcggcactgccttcggggccatggcaaaagacgagcacaacgacgagctaaggcacgca 283
|||||||| || ||||| |||||||| || | || ||||||| |||| | ||| |
Sbjct: 21924 agcggcacggcgttcggcgccatggccaagccggggctcaacgacaagctccgccactcg 21983
Query: 284 ggaatcatcgacatccagttcaagagggttccctgccagtaccctggtctgacggtgacc 343
|| ||||||||||||||||||| | | || |||||| | ||||| || || | | | | |
Sbjct: 21984 ggcatcatcgacatccagttcaggcgcgtcccctgcaactacccgggcctcaagatcaac 22043
Query: 344 ttccacatcgagcgcggctccaaccccaactacctggcggtgctggtggagtacgagaac 403
|||||| ||||| ||||||||||| ||| | || ||||| || ||||||||| ||
Sbjct: 22044 ttccacgtcgaggagggctccaacccggtgtacttcgccgtgctcgtcgagtacgaggac 22103
Query: 404 ggcgacggcgacgtggtgcaggtggacctgatggagtcca 443
|||||||||||| |||||||| ||||| ||||||||||
Sbjct: 22104 ctcgacggcgacgtcgtgcaggtcgacctcatggagtcca 22143
Score = 119 bits (60), Expect = 3e-024
Identities = 144/172 (83%)
Strand = Plus / Plus
Query: 139 ccaccctgcgtgctccggcgtggcggagacggtgatcatcacggacatgaactactaccc 198
||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct: 3762 ccaccctgcctgctccggcaacccggagacggtgatcatcaccgacatgaactactaccc 3821
Query: 199 ggtggccccctaccacttcgacctgagcggcactgccttcggggccatggcaaaagacga 258
|| || ||||||||||||||||||||||| || ||||| |||||||| || |
Sbjct: 3822 cgtttccaagtaccacttcgacctgagcggcacggcgttcggcgccatggccaagccggg 3881
Query: 259 gcacaacgacgagctaaggcacgcaggaatcatcgacatccagttcaagagg 310
||| |||||| |||| | ||||| || ||||||||||||||||||||||||
Sbjct: 3882 gcagaacgaccagctccgccacgccggcatcatcgacatccagttcaagagg 3933
Score = 111 bits (56), Expect = 7e-022
Identities = 77/84 (91%)
Strand = Plus / Plus
Query: 166 gacggtgatcatcacggacatgaactactacccggtggccccctaccacttcgacctgag 225
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct: 16007 gacggtgatcatcacggacatgaactactaccccgtggccaggtaccacttcgacctgag 16066
Query: 226 cggcactgccttcggggccatggc 249
|||||| || ||||| ||||||||
Sbjct: 16067 cggcacggcgttcggcgccatggc 16090
Score = 87.7 bits (44), Expect = 1e-014
Identities = 56/60 (93%)
Strand = Plus / Plus
Query: 380 gcggtgctggtggagtacgagaacggcgacggcgacgtggtgcaggtggacctgatggag 439
||||||||||| ||||||||| |||||||||||||||||||||||||||| || ||||||
Sbjct: 4348 gcggtgctggttgagtacgaggacggcgacggcgacgtggtgcaggtggatctcatggag 4407
Score = 71.9 bits (36), Expect = 6e-010
Identities = 63/72 (87%)
Strand = Plus / Plus
Query: 53 ttctcggcgatgacgtcgtgcggcaacgagccaatcttcaaggacggcaaaggatgcggg 112
|||||| | ||||| || |||||||||||||| ||||||||||||||||| || |||||
Sbjct: 21581 ttctcgtccatgacctcctgcggcaacgagcccatcttcaaggacggcaagggctgcggc 21640
Query: 113 tcctgctaccag 124
|| |||||||||
Sbjct: 21641 tcatgctaccag 21652
Score = 63.9 bits (32), Expect = 1e-007
Identities = 62/72 (86%)
Strand = Plus / Plus
Query: 53 ttctcggcgatgacgtcgtgcggcaacgagccaatcttcaaggacggcaaaggatgcggg 112
|||||| ||||||| || |||||||||||||| |||||||||||||| || || || ||
Sbjct: 3540 ttctcgtcgatgacctcctgcggcaacgagcctatcttcaaggacgggaagggctgtggc 3599
Query: 113 tcctgctaccag 124
|| |||||||||
Sbjct: 3600 tcatgctaccag 3611
Score = 58.0 bits (29), Expect = 9e-006
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 538 gcccttctcgctgcgcgtcaccaacgagtccggcaag 574
|||||||||||| ||| ||||||||||||||||||||
Sbjct: 4488 gcccttctcgctccgcatcaccaacgagtccggcaag 4524
>ref|NM_197698.1| Oryza sativa (japonica cultivar-group) beta-expansin EXPB6
(OSJNBb0014I11.3), mRNA
Length = 1240
Score = 127 bits (64), Expect = 1e-026
Identities = 226/280 (80%)
Strand = Plus / Plus
Query: 164 gagacggtgatcatcacggacatgaactactacccggtggccccctaccacttcgacctg 223
||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||
Sbjct: 436 gagacggtgatcatcaccgacatgaactactaccccgtggccaggtaccacttcgacctg 495
Query: 224 agcggcactgccttcggggccatggcaaaagacgagcacaacgacgagctaaggcacgca 283
|||||||| || ||||| |||||||| || | || ||||||| |||| | ||| |
Sbjct: 496 agcggcacggcgttcggcgccatggccaagccggggctcaacgacaagctccgccactcg 555
Query: 284 ggaatcatcgacatccagttcaagagggttccctgccagtaccctggtctgacggtgacc 343
|| ||||||||||||||||||| | | || |||||| | ||||| || || | | | | |
Sbjct: 556 ggcatcatcgacatccagttcaggcgcgtcccctgcaactacccgggcctcaagatcaac 615
Query: 344 ttccacatcgagcgcggctccaaccccaactacctggcggtgctggtggagtacgagaac 403
|||||| ||||| ||||||||||| ||| | || ||||| || ||||||||| ||
Sbjct: 616 ttccacgtcgaggagggctccaacccggtgtacttcgccgtgctcgtcgagtacgaggac 675
Query: 404 ggcgacggcgacgtggtgcaggtggacctgatggagtcca 443
|||||||||||| |||||||| ||||| ||||||||||
Sbjct: 676 ctcgacggcgacgtcgtgcaggtcgacctcatggagtcca 715
Score = 85.7 bits (43), Expect = 4e-014
Identities = 73/83 (87%)
Strand = Plus / Plus
Query: 53 ttctcggcgatgacgtcgtgcggcaacgagccaatcttcaaggacggcaaaggatgcggg 112
|||||| | ||||| || |||||||||||||| ||||||||||||||||| || |||||
Sbjct: 325 ttctcgtccatgacctcctgcggcaacgagcccatcttcaaggacggcaagggctgcggc 384
Query: 113 tcctgctaccagatccggtgcaa 135
|| |||||||||||| |||||||
Sbjct: 385 tcatgctaccagatcaggtgcaa 407
>ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chromosome 10
Length = 4609300
Score = 127 bits (64), Expect = 1e-026
Identities = 226/280 (80%)
Strand = Plus / Minus
Query: 164 gagacggtgatcatcacggacatgaactactacccggtggccccctaccacttcgacctg 223
||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||
Sbjct: 3233983 gagacggtgatcatcaccgacatgaactactaccccgtggccaggtaccacttcgacctg 3233924
Query: 224 agcggcactgccttcggggccatggcaaaagacgagcacaacgacgagctaaggcacgca 283
|||||||| || ||||| |||||||| || | || ||||||| |||| | ||| |
Sbjct: 3233923 agcggcacggcgttcggcgccatggccaagccggggctcaacgacaagctccgccactcg 3233864
Query: 284 ggaatcatcgacatccagttcaagagggttccctgccagtaccctggtctgacggtgacc 343
|| ||||||||||||||||||| | | || |||||| | ||||| || || | | | | |
Sbjct: 3233863 ggcatcatcgacatccagttcaggcgcgtcccctgcaactacccgggcctcaagatcaac 3233804
Query: 344 ttccacatcgagcgcggctccaaccccaactacctggcggtgctggtggagtacgagaac 403
|||||| ||||| ||||||||||| ||| | || ||||| || ||||||||| ||
Sbjct: 3233803 ttccacgtcgaggagggctccaacccggtgtacttcgccgtgctcgtcgagtacgaggac 3233744
Query: 404 ggcgacggcgacgtggtgcaggtggacctgatggagtcca 443
|||||||||||| |||||||| ||||| ||||||||||
Sbjct: 3233743 ctcgacggcgacgtcgtgcaggtcgacctcatggagtcca 3233704
Score = 119 bits (60), Expect = 3e-024
Identities = 144/172 (83%)
Strand = Plus / Minus
Query: 139 ccaccctgcgtgctccggcgtggcggagacggtgatcatcacggacatgaactactaccc 198
||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct: 3252085 ccaccctgcctgctccggcaacccggagacggtgatcatcaccgacatgaactactaccc 3252026
Query: 199 ggtggccccctaccacttcgacctgagcggcactgccttcggggccatggcaaaagacga 258
|| || ||||||||||||||||||||||| || ||||| |||||||| || |
Sbjct: 3252025 cgtttccaagtaccacttcgacctgagcggcacggcgttcggcgccatggccaagccggg 3251966
Query: 259 gcacaacgacgagctaaggcacgcaggaatcatcgacatccagttcaagagg 310
||| |||||| |||| | ||||| || ||||||||||||||||||||||||
Sbjct: 3251965 gcagaacgaccagctccgccacgccggcatcatcgacatccagttcaagagg 3251914
Score = 115 bits (58), Expect = 4e-023
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 380 gcggtgctggtggagtacgagaacggcgacggcgacgtggtgcaggtggacctgatggag 439
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 3263679 gcggtgctggtggagtacgaggacggcgacggcgacgtggtgcaggtggacctgatggag 3263738
Query: 440 tc 441
||
Sbjct: 3263739 tc 3263740
Score = 111 bits (56), Expect = 7e-022
Identities = 77/84 (91%)
Strand = Plus / Minus
Query: 166 gacggtgatcatcacggacatgaactactacccggtggccccctaccacttcgacctgag 225
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct: 3239840 gacggtgatcatcacggacatgaactactaccccgtggccaggtaccacttcgacctgag 3239781
Query: 226 cggcactgccttcggggccatggc 249
|||||| || ||||| ||||||||
Sbjct: 3239780 cggcacggcgttcggcgccatggc 3239757
Score = 107 bits (54), Expect = 1e-020
Identities = 84/94 (89%)
Strand = Plus / Plus
Query: 147 cgtgctccggcgtggcggagacggtgatcatcacggacatgaactactacccggtggccc 206
||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct: 3262868 cgtgctccggcaggtcggagacggtgatcatcaccgacatgaactactacccggtggctc 3262927
Query: 207 cctaccacttcgacctgagcggcactgccttcgg 240
| | |||||||||||| |||||||| || |||||
Sbjct: 3262928 cgttccacttcgacctcagcggcacggcgttcgg 3262961
Score = 87.7 bits (44), Expect = 1e-014
Identities = 56/60 (93%)
Strand = Plus / Minus
Query: 380 gcggtgctggtggagtacgagaacggcgacggcgacgtggtgcaggtggacctgatggag 439
||||||||||| ||||||||| |||||||||||||||||||||||||||| || ||||||
Sbjct: 3251499 gcggtgctggttgagtacgaggacggcgacggcgacgtggtgcaggtggatctcatggag 3251440
Score = 71.9 bits (36), Expect = 6e-010
Identities = 63/72 (87%)
Strand = Plus / Minus
Query: 53 ttctcggcgatgacgtcgtgcggcaacgagccaatcttcaaggacggcaaaggatgcggg 112
|||||| | ||||| || |||||||||||||| ||||||||||||||||| || |||||
Sbjct: 3234266 ttctcgtccatgacctcctgcggcaacgagcccatcttcaaggacggcaagggctgcggc 3234207
Query: 113 tcctgctaccag 124
|| |||||||||
Sbjct: 3234206 tcatgctaccag 3234195
Score = 63.9 bits (32), Expect = 1e-007
Identities = 62/72 (86%)
Strand = Plus / Minus
Query: 53 ttctcggcgatgacgtcgtgcggcaacgagccaatcttcaaggacggcaaaggatgcggg 112
|||||| ||||||| || |||||||||||||| |||||||||||||| || || || ||
Sbjct: 3252307 ttctcgtcgatgacctcctgcggcaacgagcctatcttcaaggacgggaagggctgtggc 3252248
Query: 113 tcctgctaccag 124
|| |||||||||
Sbjct: 3252247 tcatgctaccag 3252236
Score = 60.0 bits (30), Expect = 2e-006
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 60 cgatgacgtcgtgcggcaacgagccaatcttcaaggacggcaaaggatgcgggtcctgct 119
||||||| || ||||||||| ||||| | |||||||||||||| |||||||| || ||||
Sbjct: 3262532 cgatgacctcctgcggcaaccagccattgttcaaggacggcaagggatgcggctcttgct 3262591
Query: 120 ac 121
||
Sbjct: 3262592 ac 3262593
Score = 58.0 bits (29), Expect = 9e-006
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 538 gcccttctcgctgcgcgtcaccaacgagtccggcaag 574
|||||||||||| ||| ||||||||||||||||||||
Sbjct: 3251359 gcccttctcgctccgcatcaccaacgagtccggcaag 3251323
Score = 54.0 bits (27), Expect = 1e-004
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 71 tgcggcaacgagccaatcttcaaggacggcaaaggatgcgggtcctgctac 121
|||||||||| ||||||||||||||||||| |||||||| || ||||||
Sbjct: 2868619 tgcggcaacgtcccaatcttcaaggacggcaggggatgcggctcatgctac 2868669
Score = 52.0 bits (26), Expect = 5e-004
Identities = 85/104 (81%), Gaps = 3/104 (2%)
Strand = Plus / Plus
Query: 287 atcatcgacatccagttcaagagggttccctgccagtaccctggt---ctgacggtgacc 343
||||||||||| ||||||| |||||| | |||| ||||||| || | || ||| |||
Sbjct: 2869213 atcatcgacatgcagttcaggagggtgcgctgcaagtaccccggcggccagaaggtcacc 2869272
Query: 344 ttccacatcgagcgcggctccaaccccaactacctggcggtgct 387
|||||| ||||| |||||||||||||||||||| || |||||
Sbjct: 2869273 ttccacgtcgagaagggctccaaccccaactacctcgccgtgct 2869316
Score = 48.1 bits (24), Expect = 0.008
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 166 gacggtgatcatcacggacatgaactac 193
||||||| ||||||||||||||||||||
Sbjct: 2869092 gacggtgttcatcacggacatgaactac 2869119
>gb|CH401254.1| Oryza sativa (japonica cultivar-group) chromosome 10 scaffold000091 genomic
scaffold, whole genome shotgun sequence
Length = 10615099
Score = 127 bits (64), Expect = 1e-026
Identities = 226/280 (80%)
Strand = Plus / Minus
Query: 164 gagacggtgatcatcacggacatgaactactacccggtggccccctaccacttcgacctg 223
||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||
Sbjct: 9287142 gagacggtgatcatcaccgacatgaactactaccccgtggccaggtaccacttcgacctg 9287083
Query: 224 agcggcactgccttcggggccatggcaaaagacgagcacaacgacgagctaaggcacgca 283
|||||||| || ||||| |||||||| || | || ||||||| |||| | ||| |
Sbjct: 9287082 agcggcacggcgttcggcgccatggccaagccggggctcaacgacaagctccgccactcg 9287023
Query: 284 ggaatcatcgacatccagttcaagagggttccctgccagtaccctggtctgacggtgacc 343
|| ||||||||||||||||||| | | || |||||| | ||||| || || | | | | |
Sbjct: 9287022 ggcatcatcgacatccagttcaggcgcgtcccctgcaactacccgggcctcaagatcaac 9286963
Query: 344 ttccacatcgagcgcggctccaaccccaactacctggcggtgctggtggagtacgagaac 403
|||||| ||||| ||||||||||| ||| | || ||||| || ||||||||| ||
Sbjct: 9286962 ttccacgtcgaggagggctccaacccggtgtacttcgccgtgctcgtcgagtacgaggac 9286903
Query: 404 ggcgacggcgacgtggtgcaggtggacctgatggagtcca 443
|||||||||||| |||||||| ||||| ||||||||||
Sbjct: 9286902 ctcgacggcgacgtcgtgcaggtcgacctcatggagtcca 9286863
Score = 119 bits (60), Expect = 3e-024
Identities = 144/172 (83%)
Strand = Plus / Minus
Query: 139 ccaccctgcgtgctccggcgtggcggagacggtgatcatcacggacatgaactactaccc 198
||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct: 9305244 ccaccctgcctgctccggcaacccggagacggtgatcatcaccgacatgaactactaccc 9305185
Query: 199 ggtggccccctaccacttcgacctgagcggcactgccttcggggccatggcaaaagacga 258
|| || ||||||||||||||||||||||| || ||||| |||||||| || |
Sbjct: 9305184 cgtttccaagtaccacttcgacctgagcggcacggcgttcggcgccatggccaagccggg 9305125
Query: 259 gcacaacgacgagctaaggcacgcaggaatcatcgacatccagttcaagagg 310
||| |||||| |||| | ||||| || ||||||||||||||||||||||||
Sbjct: 9305124 gcagaacgaccagctccgccacgccggcatcatcgacatccagttcaagagg 9305073
Score = 115 bits (58), Expect = 4e-023
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 380 gcggtgctggtggagtacgagaacggcgacggcgacgtggtgcaggtggacctgatggag 439
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 9316554 gcggtgctggtggagtacgaggacggcgacggcgacgtggtgcaggtggacctgatggag 9316613
Query: 440 tc 441
||
Sbjct: 9316614 tc 9316615
Score = 111 bits (56), Expect = 7e-022
Identities = 77/84 (91%)
Strand = Plus / Minus
Query: 166 gacggtgatcatcacggacatgaactactacccggtggccccctaccacttcgacctgag 225
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct: 9292999 gacggtgatcatcacggacatgaactactaccccgtggccaggtaccacttcgacctgag 9292940
Query: 226 cggcactgccttcggggccatggc 249
|||||| || ||||| ||||||||
Sbjct: 9292939 cggcacggcgttcggcgccatggc 9292916
Score = 107 bits (54), Expect = 1e-020
Identities = 84/94 (89%)
Strand = Plus / Plus
Query: 147 cgtgctccggcgtggcggagacggtgatcatcacggacatgaactactacccggtggccc 206
||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct: 9315743 cgtgctccggcaggtcggagacggtgatcatcaccgacatgaactactacccggtggctc 9315802
Query: 207 cctaccacttcgacctgagcggcactgccttcgg 240
| | |||||||||||| |||||||| || |||||
Sbjct: 9315803 cgttccacttcgacctcagcggcacggcgttcgg 9315836
Score = 87.7 bits (44), Expect = 1e-014
Identities = 56/60 (93%)
Strand = Plus / Minus
Query: 380 gcggtgctggtggagtacgagaacggcgacggcgacgtggtgcaggtggacctgatggag 439
||||||||||| ||||||||| |||||||||||||||||||||||||||| || ||||||
Sbjct: 9304658 gcggtgctggttgagtacgaggacggcgacggcgacgtggtgcaggtggatctcatggag 9304599
Score = 71.9 bits (36), Expect = 6e-010
Identities = 63/72 (87%)
Strand = Plus / Minus
Query: 53 ttctcggcgatgacgtcgtgcggcaacgagccaatcttcaaggacggcaaaggatgcggg 112
|||||| | ||||| || |||||||||||||| ||||||||||||||||| || |||||
Sbjct: 9287425 ttctcgtccatgacctcctgcggcaacgagcccatcttcaaggacggcaagggctgcggc 9287366
Query: 113 tcctgctaccag 124
|| |||||||||
Sbjct: 9287365 tcatgctaccag 9287354
Score = 63.9 bits (32), Expect = 1e-007
Identities = 62/72 (86%)
Strand = Plus / Minus
Query: 53 ttctcggcgatgacgtcgtgcggcaacgagccaatcttcaaggacggcaaaggatgcggg 112
|||||| ||||||| || |||||||||||||| |||||||||||||| || || || ||
Sbjct: 9305466 ttctcgtcgatgacctcctgcggcaacgagcctatcttcaaggacgggaagggctgtggc 9305407
Query: 113 tcctgctaccag 124
|| |||||||||
Sbjct: 9305406 tcatgctaccag 9305395
Score = 60.0 bits (30), Expect = 2e-006
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 60 cgatgacgtcgtgcggcaacgagccaatcttcaaggacggcaaaggatgcgggtcctgct 119
||||||| || ||||||||| ||||| | |||||||||||||| |||||||| || ||||
Sbjct: 9315407 cgatgacctcctgcggcaaccagccattgttcaaggacggcaagggatgcggctcttgct 9315466
Query: 120 ac 121
||
Sbjct: 9315467 ac 9315468
Score = 58.0 bits (29), Expect = 9e-006
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 538 gcccttctcgctgcgcgtcaccaacgagtccggcaag 574
|||||||||||| ||| ||||||||||||||||||||
Sbjct: 9304518 gcccttctcgctccgcatcaccaacgagtccggcaag 9304482
Score = 54.0 bits (27), Expect = 1e-004
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 71 tgcggcaacgagccaatcttcaaggacggcaaaggatgcgggtcctgctac 121
|||||||||| ||||||||||||||||||| |||||||| || ||||||
Sbjct: 8898333 tgcggcaacgtcccaatcttcaaggacggcaggggatgcggctcatgctac 8898383
Score = 52.0 bits (26), Expect = 5e-004
Identities = 85/104 (81%), Gaps = 3/104 (2%)
Strand = Plus / Plus
Query: 287 atcatcgacatccagttcaagagggttccctgccagtaccctggt---ctgacggtgacc 343
||||||||||| ||||||| |||||| | |||| ||||||| || | || ||| |||
Sbjct: 8898927 atcatcgacatgcagttcaggagggtgcgctgcaagtaccccggcggccagaaggtcacc 8898986
Query: 344 ttccacatcgagcgcggctccaaccccaactacctggcggtgct 387
|||||| ||||| |||||||||||||||||||| || |||||
Sbjct: 8898987 ttccacgtcgagaagggctccaaccccaactacctcgccgtgct 8899030
Score = 48.1 bits (24), Expect = 0.008
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 166 gacggtgatcatcacggacatgaactac 193
||||||| ||||||||||||||||||||
Sbjct: 8898806 gacggtgttcatcacggacatgaactac 8898833
>gb|CM000147.1| Oryza sativa (japonica cultivar-group) chromosome 10, whole genome shotgun
sequence
Length = 21480893
Score = 127 bits (64), Expect = 1e-026
Identities = 226/280 (80%)
Strand = Plus / Minus
Query: 164 gagacggtgatcatcacggacatgaactactacccggtggccccctaccacttcgacctg 223
||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||
Sbjct: 20152936 gagacggtgatcatcaccgacatgaactactaccccgtggccaggtaccacttcgacctg 20152877
Query: 224 agcggcactgccttcggggccatggcaaaagacgagcacaacgacgagctaaggcacgca 283
|||||||| || ||||| |||||||| || | || ||||||| |||| | ||| |
Sbjct: 20152876 agcggcacggcgttcggcgccatggccaagccggggctcaacgacaagctccgccactcg 20152817
Query: 284 ggaatcatcgacatccagttcaagagggttccctgccagtaccctggtctgacggtgacc 343
|| ||||||||||||||||||| | | || |||||| | ||||| || || | | | | |
Sbjct: 20152816 ggcatcatcgacatccagttcaggcgcgtcccctgcaactacccgggcctcaagatcaac 20152757
Query: 344 ttccacatcgagcgcggctccaaccccaactacctggcggtgctggtggagtacgagaac 403
|||||| ||||| ||||||||||| ||| | || ||||| || ||||||||| ||
Sbjct: 20152756 ttccacgtcgaggagggctccaacccggtgtacttcgccgtgctcgtcgagtacgaggac 20152697
Query: 404 ggcgacggcgacgtggtgcaggtggacctgatggagtcca 443
|||||||||||| |||||||| ||||| ||||||||||
Sbjct: 20152696 ctcgacggcgacgtcgtgcaggtcgacctcatggagtcca 20152657
Score = 119 bits (60), Expect = 3e-024
Identities = 144/172 (83%)
Strand = Plus / Minus
Query: 139 ccaccctgcgtgctccggcgtggcggagacggtgatcatcacggacatgaactactaccc 198
||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct: 20171038 ccaccctgcctgctccggcaacccggagacggtgatcatcaccgacatgaactactaccc 20170979
Query: 199 ggtggccccctaccacttcgacctgagcggcactgccttcggggccatggcaaaagacga 258
|| || ||||||||||||||||||||||| || ||||| |||||||| || |
Sbjct: 20170978 cgtttccaagtaccacttcgacctgagcggcacggcgttcggcgccatggccaagccggg 20170919
Query: 259 gcacaacgacgagctaaggcacgcaggaatcatcgacatccagttcaagagg 310
||| |||||| |||| | ||||| || ||||||||||||||||||||||||
Sbjct: 20170918 gcagaacgaccagctccgccacgccggcatcatcgacatccagttcaagagg 20170867
Score = 115 bits (58), Expect = 4e-023
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 380 gcggtgctggtggagtacgagaacggcgacggcgacgtggtgcaggtggacctgatggag 439
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 20182348 gcggtgctggtggagtacgaggacggcgacggcgacgtggtgcaggtggacctgatggag 20182407
Query: 440 tc 441
||
Sbjct: 20182408 tc 20182409
Score = 111 bits (56), Expect = 7e-022
Identities = 77/84 (91%)
Strand = Plus / Minus
Query: 166 gacggtgatcatcacggacatgaactactacccggtggccccctaccacttcgacctgag 225
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct: 20158793 gacggtgatcatcacggacatgaactactaccccgtggccaggtaccacttcgacctgag 20158734
Query: 226 cggcactgccttcggggccatggc 249
|||||| || ||||| ||||||||
Sbjct: 20158733 cggcacggcgttcggcgccatggc 20158710
Score = 107 bits (54), Expect = 1e-020
Identities = 84/94 (89%)
Strand = Plus / Plus
Query: 147 cgtgctccggcgtggcggagacggtgatcatcacggacatgaactactacccggtggccc 206
||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct: 20181537 cgtgctccggcaggtcggagacggtgatcatcaccgacatgaactactacccggtggctc 20181596
Query: 207 cctaccacttcgacctgagcggcactgccttcgg 240
| | |||||||||||| |||||||| || |||||
Sbjct: 20181597 cgttccacttcgacctcagcggcacggcgttcgg 20181630
Score = 87.7 bits (44), Expect = 1e-014
Identities = 56/60 (93%)
Strand = Plus / Minus
Query: 380 gcggtgctggtggagtacgagaacggcgacggcgacgtggtgcaggtggacctgatggag 439
||||||||||| ||||||||| |||||||||||||||||||||||||||| || ||||||
Sbjct: 20170452 gcggtgctggttgagtacgaggacggcgacggcgacgtggtgcaggtggatctcatggag 20170393
Score = 71.9 bits (36), Expect = 6e-010
Identities = 63/72 (87%)
Strand = Plus / Minus
Query: 53 ttctcggcgatgacgtcgtgcggcaacgagccaatcttcaaggacggcaaaggatgcggg 112
|||||| | ||||| || |||||||||||||| ||||||||||||||||| || |||||
Sbjct: 20153219 ttctcgtccatgacctcctgcggcaacgagcccatcttcaaggacggcaagggctgcggc 20153160
Query: 113 tcctgctaccag 124
|| |||||||||
Sbjct: 20153159 tcatgctaccag 20153148
Score = 63.9 bits (32), Expect = 1e-007
Identities = 62/72 (86%)
Strand = Plus / Minus
Query: 53 ttctcggcgatgacgtcgtgcggcaacgagccaatcttcaaggacggcaaaggatgcggg 112
|||||| ||||||| || |||||||||||||| |||||||||||||| || || || ||
Sbjct: 20171260 ttctcgtcgatgacctcctgcggcaacgagcctatcttcaaggacgggaagggctgtggc 20171201
Query: 113 tcctgctaccag 124
|| |||||||||
Sbjct: 20171200 tcatgctaccag 20171189
Score = 60.0 bits (30), Expect = 2e-006
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 60 cgatgacgtcgtgcggcaacgagccaatcttcaaggacggcaaaggatgcgggtcctgct 119
||||||| || ||||||||| ||||| | |||||||||||||| |||||||| || ||||
Sbjct: 20181201 cgatgacctcctgcggcaaccagccattgttcaaggacggcaagggatgcggctcttgct 20181260
Query: 120 ac 121
||
Sbjct: 20181261 ac 20181262
Score = 58.0 bits (29), Expect = 9e-006
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 538 gcccttctcgctgcgcgtcaccaacgagtccggcaag 574
|||||||||||| ||| ||||||||||||||||||||
Sbjct: 20170312 gcccttctcgctccgcatcaccaacgagtccggcaag 20170276
Score = 54.0 bits (27), Expect = 1e-004
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 71 tgcggcaacgagccaatcttcaaggacggcaaaggatgcgggtcctgctac 121
|||||||||| ||||||||||||||||||| |||||||| || ||||||
Sbjct: 19764127 tgcggcaacgtcccaatcttcaaggacggcaggggatgcggctcatgctac 19764177
Score = 52.0 bits (26), Expect = 5e-004
Identities = 85/104 (81%), Gaps = 3/104 (2%)
Strand = Plus / Plus
Query: 287 atcatcgacatccagttcaagagggttccctgccagtaccctggt---ctgacggtgacc 343
||||||||||| ||||||| |||||| | |||| ||||||| || | || ||| |||
Sbjct: 19764721 atcatcgacatgcagttcaggagggtgcgctgcaagtaccccggcggccagaaggtcacc 19764780
Query: 344 ttccacatcgagcgcggctccaaccccaactacctggcggtgct 387
|||||| ||||| |||||||||||||||||||| || |||||
Sbjct: 19764781 ttccacgtcgagaagggctccaaccccaactacctcgccgtgct 19764824
Score = 48.1 bits (24), Expect = 0.008
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 166 gacggtgatcatcacggacatgaactac 193
||||||| ||||||||||||||||||||
Sbjct: 19764600 gacggtgttcatcacggacatgaactac 19764627
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
sequence
Length = 22685906
Score = 127 bits (64), Expect = 1e-026
Identities = 226/280 (80%)
Strand = Plus / Minus
Query: 164 gagacggtgatcatcacggacatgaactactacccggtggccccctaccacttcgacctg 223
||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||
Sbjct: 21311789 gagacggtgatcatcaccgacatgaactactaccccgtggccaggtaccacttcgacctg 21311730
Query: 224 agcggcactgccttcggggccatggcaaaagacgagcacaacgacgagctaaggcacgca 283
|||||||| || ||||| |||||||| || | || ||||||| |||| | ||| |
Sbjct: 21311729 agcggcacggcgttcggcgccatggccaagccggggctcaacgacaagctccgccactcg 21311670
Query: 284 ggaatcatcgacatccagttcaagagggttccctgccagtaccctggtctgacggtgacc 343
|| ||||||||||||||||||| | | || |||||| | ||||| || || | | | | |
Sbjct: 21311669 ggcatcatcgacatccagttcaggcgcgtcccctgcaactacccgggcctcaagatcaac 21311610
Query: 344 ttccacatcgagcgcggctccaaccccaactacctggcggtgctggtggagtacgagaac 403
|||||| ||||| ||||||||||| ||| | || ||||| || ||||||||| ||
Sbjct: 21311609 ttccacgtcgaggagggctccaacccggtgtacttcgccgtgctcgtcgagtacgaggac 21311550
Query: 404 ggcgacggcgacgtggtgcaggtggacctgatggagtcca 443
|||||||||||| |||||||| ||||| ||||||||||
Sbjct: 21311549 ctcgacggcgacgtcgtgcaggtcgacctcatggagtcca 21311510
Score = 119 bits (60), Expect = 3e-024
Identities = 144/172 (83%)
Strand = Plus / Minus
Query: 139 ccaccctgcgtgctccggcgtggcggagacggtgatcatcacggacatgaactactaccc 198
||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct: 21329891 ccaccctgcctgctccggcaacccggagacggtgatcatcaccgacatgaactactaccc 21329832
Query: 199 ggtggccccctaccacttcgacctgagcggcactgccttcggggccatggcaaaagacga 258
|| || ||||||||||||||||||||||| || ||||| |||||||| || |
Sbjct: 21329831 cgtttccaagtaccacttcgacctgagcggcacggcgttcggcgccatggccaagccggg 21329772
Query: 259 gcacaacgacgagctaaggcacgcaggaatcatcgacatccagttcaagagg 310
||| |||||| |||| | ||||| || ||||||||||||||||||||||||
Sbjct: 21329771 gcagaacgaccagctccgccacgccggcatcatcgacatccagttcaagagg 21329720
Score = 115 bits (58), Expect = 4e-023
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 380 gcggtgctggtggagtacgagaacggcgacggcgacgtggtgcaggtggacctgatggag 439
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 21341485 gcggtgctggtggagtacgaggacggcgacggcgacgtggtgcaggtggacctgatggag 21341544
Query: 440 tc 441
||
Sbjct: 21341545 tc 21341546
Score = 111 bits (56), Expect = 7e-022
Identities = 77/84 (91%)
Strand = Plus / Minus
Query: 166 gacggtgatcatcacggacatgaactactacccggtggccccctaccacttcgacctgag 225
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct: 21317646 gacggtgatcatcacggacatgaactactaccccgtggccaggtaccacttcgacctgag 21317587
Query: 226 cggcactgccttcggggccatggc 249
|||||| || ||||| ||||||||
Sbjct: 21317586 cggcacggcgttcggcgccatggc 21317563
Score = 107 bits (54), Expect = 1e-020
Identities = 84/94 (89%)
Strand = Plus / Plus
Query: 147 cgtgctccggcgtggcggagacggtgatcatcacggacatgaactactacccggtggccc 206
||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct: 21340674 cgtgctccggcaggtcggagacggtgatcatcaccgacatgaactactacccggtggctc 21340733
Query: 207 cctaccacttcgacctgagcggcactgccttcgg 240
| | |||||||||||| |||||||| || |||||
Sbjct: 21340734 cgttccacttcgacctcagcggcacggcgttcgg 21340767
Score = 87.7 bits (44), Expect = 1e-014
Identities = 56/60 (93%)
Strand = Plus / Minus
Query: 380 gcggtgctggtggagtacgagaacggcgacggcgacgtggtgcaggtggacctgatggag 439
||||||||||| ||||||||| |||||||||||||||||||||||||||| || ||||||
Sbjct: 21329305 gcggtgctggttgagtacgaggacggcgacggcgacgtggtgcaggtggatctcatggag 21329246
Score = 71.9 bits (36), Expect = 6e-010
Identities = 63/72 (87%)
Strand = Plus / Minus
Query: 53 ttctcggcgatgacgtcgtgcggcaacgagccaatcttcaaggacggcaaaggatgcggg 112
|||||| | ||||| || |||||||||||||| ||||||||||||||||| || |||||
Sbjct: 21312072 ttctcgtccatgacctcctgcggcaacgagcccatcttcaaggacggcaagggctgcggc 21312013
Query: 113 tcctgctaccag 124
|| |||||||||
Sbjct: 21312012 tcatgctaccag 21312001
Score = 63.9 bits (32), Expect = 1e-007
Identities = 62/72 (86%)
Strand = Plus / Minus
Query: 53 ttctcggcgatgacgtcgtgcggcaacgagccaatcttcaaggacggcaaaggatgcggg 112
|||||| ||||||| || |||||||||||||| |||||||||||||| || || || ||
Sbjct: 21330113 ttctcgtcgatgacctcctgcggcaacgagcctatcttcaaggacgggaagggctgtggc 21330054
Query: 113 tcctgctaccag 124
|| |||||||||
Sbjct: 21330053 tcatgctaccag 21330042
Score = 60.0 bits (30), Expect = 2e-006
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 60 cgatgacgtcgtgcggcaacgagccaatcttcaaggacggcaaaggatgcgggtcctgct 119
||||||| || ||||||||| ||||| | |||||||||||||| |||||||| || ||||
Sbjct: 21340338 cgatgacctcctgcggcaaccagccattgttcaaggacggcaagggatgcggctcttgct 21340397
Query: 120 ac 121
||
Sbjct: 21340398 ac 21340399
Score = 58.0 bits (29), Expect = 9e-006
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 538 gcccttctcgctgcgcgtcaccaacgagtccggcaag 574
|||||||||||| ||| ||||||||||||||||||||
Sbjct: 21329165 gcccttctcgctccgcatcaccaacgagtccggcaag 21329129
Score = 54.0 bits (27), Expect = 1e-004
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 71 tgcggcaacgagccaatcttcaaggacggcaaaggatgcgggtcctgctac 121
|||||||||| ||||||||||||||||||| |||||||| || ||||||
Sbjct: 20946425 tgcggcaacgtcccaatcttcaaggacggcaggggatgcggctcatgctac 20946475
Score = 52.0 bits (26), Expect = 5e-004
Identities = 85/104 (81%), Gaps = 3/104 (2%)
Strand = Plus / Plus
Query: 287 atcatcgacatccagttcaagagggttccctgccagtaccctggt---ctgacggtgacc 343
||||||||||| ||||||| |||||| | |||| ||||||| || | || ||| |||
Sbjct: 20947019 atcatcgacatgcagttcaggagggtgcgctgcaagtaccccggcggccagaaggtcacc 20947078
Query: 344 ttccacatcgagcgcggctccaaccccaactacctggcggtgct 387
|||||| ||||| |||||||||||||||||||| || |||||
Sbjct: 20947079 ttccacgtcgagaagggctccaaccccaactacctcgccgtgct 20947122
Score = 48.1 bits (24), Expect = 0.008
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 166 gacggtgatcatcacggacatgaactac 193
||||||| ||||||||||||||||||||
Sbjct: 20946898 gacggtgttcatcacggacatgaactac 20946925
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
Length = 22698374
Score = 127 bits (64), Expect = 1e-026
Identities = 226/280 (80%)
Strand = Plus / Minus
Query: 164 gagacggtgatcatcacggacatgaactactacccggtggccccctaccacttcgacctg 223
||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||
Sbjct: 21323053 gagacggtgatcatcaccgacatgaactactaccccgtggccaggtaccacttcgacctg 21322994
Query: 224 agcggcactgccttcggggccatggcaaaagacgagcacaacgacgagctaaggcacgca 283
|||||||| || ||||| |||||||| || | || ||||||| |||| | ||| |
Sbjct: 21322993 agcggcacggcgttcggcgccatggccaagccggggctcaacgacaagctccgccactcg 21322934
Query: 284 ggaatcatcgacatccagttcaagagggttccctgccagtaccctggtctgacggtgacc 343
|| ||||||||||||||||||| | | || |||||| | ||||| || || | | | | |
Sbjct: 21322933 ggcatcatcgacatccagttcaggcgcgtcccctgcaactacccgggcctcaagatcaac 21322874
Query: 344 ttccacatcgagcgcggctccaaccccaactacctggcggtgctggtggagtacgagaac 403
|||||| ||||| ||||||||||| ||| | || ||||| || ||||||||| ||
Sbjct: 21322873 ttccacgtcgaggagggctccaacccggtgtacttcgccgtgctcgtcgagtacgaggac 21322814
Query: 404 ggcgacggcgacgtggtgcaggtggacctgatggagtcca 443
|||||||||||| |||||||| ||||| ||||||||||
Sbjct: 21322813 ctcgacggcgacgtcgtgcaggtcgacctcatggagtcca 21322774
Score = 119 bits (60), Expect = 3e-024
Identities = 144/172 (83%)
Strand = Plus / Minus
Query: 139 ccaccctgcgtgctccggcgtggcggagacggtgatcatcacggacatgaactactaccc 198
||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct: 21341155 ccaccctgcctgctccggcaacccggagacggtgatcatcaccgacatgaactactaccc 21341096
Query: 199 ggtggccccctaccacttcgacctgagcggcactgccttcggggccatggcaaaagacga 258
|| || ||||||||||||||||||||||| || ||||| |||||||| || |
Sbjct: 21341095 cgtttccaagtaccacttcgacctgagcggcacggcgttcggcgccatggccaagccggg 21341036
Query: 259 gcacaacgacgagctaaggcacgcaggaatcatcgacatccagttcaagagg 310
||| |||||| |||| | ||||| || ||||||||||||||||||||||||
Sbjct: 21341035 gcagaacgaccagctccgccacgccggcatcatcgacatccagttcaagagg 21340984
Score = 115 bits (58), Expect = 4e-023
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 380 gcggtgctggtggagtacgagaacggcgacggcgacgtggtgcaggtggacctgatggag 439
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 21352748 gcggtgctggtggagtacgaggacggcgacggcgacgtggtgcaggtggacctgatggag 21352807
Query: 440 tc 441
||
Sbjct: 21352808 tc 21352809
Score = 111 bits (56), Expect = 7e-022
Identities = 77/84 (91%)
Strand = Plus / Minus
Query: 166 gacggtgatcatcacggacatgaactactacccggtggccccctaccacttcgacctgag 225
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct: 21328910 gacggtgatcatcacggacatgaactactaccccgtggccaggtaccacttcgacctgag 21328851
Query: 226 cggcactgccttcggggccatggc 249
|||||| || ||||| ||||||||
Sbjct: 21328850 cggcacggcgttcggcgccatggc 21328827
Score = 107 bits (54), Expect = 1e-020
Identities = 84/94 (89%)
Strand = Plus / Plus
Query: 147 cgtgctccggcgtggcggagacggtgatcatcacggacatgaactactacccggtggccc 206
||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct: 21351937 cgtgctccggcaggtcggagacggtgatcatcaccgacatgaactactacccggtggctc 21351996
Query: 207 cctaccacttcgacctgagcggcactgccttcgg 240
| | |||||||||||| |||||||| || |||||
Sbjct: 21351997 cgttccacttcgacctcagcggcacggcgttcgg 21352030
Score = 87.7 bits (44), Expect = 1e-014
Identities = 56/60 (93%)
Strand = Plus / Minus
Query: 380 gcggtgctggtggagtacgagaacggcgacggcgacgtggtgcaggtggacctgatggag 439
||||||||||| ||||||||| |||||||||||||||||||||||||||| || ||||||
Sbjct: 21340569 gcggtgctggttgagtacgaggacggcgacggcgacgtggtgcaggtggatctcatggag 21340510
Score = 71.9 bits (36), Expect = 6e-010
Identities = 63/72 (87%)
Strand = Plus / Minus
Query: 53 ttctcggcgatgacgtcgtgcggcaacgagccaatcttcaaggacggcaaaggatgcggg 112
|||||| | ||||| || |||||||||||||| ||||||||||||||||| || |||||
Sbjct: 21323336 ttctcgtccatgacctcctgcggcaacgagcccatcttcaaggacggcaagggctgcggc 21323277
Query: 113 tcctgctaccag 124
|| |||||||||
Sbjct: 21323276 tcatgctaccag 21323265
Score = 63.9 bits (32), Expect = 1e-007
Identities = 62/72 (86%)
Strand = Plus / Minus
Query: 53 ttctcggcgatgacgtcgtgcggcaacgagccaatcttcaaggacggcaaaggatgcggg 112
|||||| ||||||| || |||||||||||||| |||||||||||||| || || || ||
Sbjct: 21341377 ttctcgtcgatgacctcctgcggcaacgagcctatcttcaaggacgggaagggctgtggc 21341318
Query: 113 tcctgctaccag 124
|| |||||||||
Sbjct: 21341317 tcatgctaccag 21341306
Score = 60.0 bits (30), Expect = 2e-006
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 60 cgatgacgtcgtgcggcaacgagccaatcttcaaggacggcaaaggatgcgggtcctgct 119
||||||| || ||||||||| ||||| | |||||||||||||| |||||||| || ||||
Sbjct: 21351601 cgatgacctcctgcggcaaccagccattgttcaaggacggcaagggatgcggctcttgct 21351660
Query: 120 ac 121
||
Sbjct: 21351661 ac 21351662
Score = 58.0 bits (29), Expect = 9e-006
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 538 gcccttctcgctgcgcgtcaccaacgagtccggcaag 574
|||||||||||| ||| ||||||||||||||||||||
Sbjct: 21340429 gcccttctcgctccgcatcaccaacgagtccggcaag 21340393
Score = 54.0 bits (27), Expect = 1e-004
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 71 tgcggcaacgagccaatcttcaaggacggcaaaggatgcgggtcctgctac 121
|||||||||| ||||||||||||||||||| |||||||| || ||||||
Sbjct: 20957689 tgcggcaacgtcccaatcttcaaggacggcaggggatgcggctcatgctac 20957739
Score = 52.0 bits (26), Expect = 5e-004
Identities = 85/104 (81%), Gaps = 3/104 (2%)
Strand = Plus / Plus
Query: 287 atcatcgacatccagttcaagagggttccctgccagtaccctggt---ctgacggtgacc 343
||||||||||| ||||||| |||||| | |||| ||||||| || | || ||| |||
Sbjct: 20958283 atcatcgacatgcagttcaggagggtgcgctgcaagtaccccggcggccagaaggtcacc 20958342
Query: 344 ttccacatcgagcgcggctccaaccccaactacctggcggtgct 387
|||||| ||||| |||||||||||||||||||| || |||||
Sbjct: 20958343 ttccacgtcgagaagggctccaaccccaactacctcgccgtgct 20958386
Score = 48.1 bits (24), Expect = 0.008
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 166 gacggtgatcatcacggacatgaactac 193
||||||| ||||||||||||||||||||
Sbjct: 20958162 gacggtgttcatcacggacatgaactac 20958189
>gb|AU029750.1|AU029750 AU029750 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E31457_6Z, mRNA sequence
Length = 381
Score = 125 bits (63), Expect = 4e-026
Identities = 136/161 (84%)
Strand = Plus / Plus
Query: 488 gagtcctggggctccatatggaggatggacacccgccggccgctgcaagggcccttctcg 547
||||| ||||| || ||||||||| |||||||| || |||||||| |||||||||||
Sbjct: 19 gagtcgtggggatcgatatggaggctggacaccaaccacccgctgcaggggcccttctcc 78
Query: 548 ctgcgcgtcaccaacgagtccggcaagacgctggtggcggaccaggtcattccggcagac 607
|| ||| |||||||||||||||||||||| || | || || |||||||| || || |||
Sbjct: 79 ctccgcatcaccaacgagtccggcaagaccctcatcgccgatcaggtcatccccgccgac 138
Query: 608 tggcagcccgacaacgtctacagctccatcgtccagttcga 648
|||| ||| ||| |||||||||||||||||||||||||||
Sbjct: 139 tggcngccnaacaccgtctacagctccatcgtccagttcga 179
Score = 46.1 bits (23), Expect = 0.033
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 867 atcgagacgtcgcttgtgacgtccgt 892
|||||||| |||||||||||||||||
Sbjct: 251 atcgagacntcgcttgtgacgtccgt 276
>gb|CF326079.1|CF326079 JMT1--05-A19.g1 AtJMT-overexpressing transgenic rice lambda phage
cDNA library (JMT1) Oryza sativa (japonica
cultivar-group) cDNA clone JMT1--05-A19, mRNA sequence
Length = 518
Score = 125 bits (63), Expect = 4e-026
Identities = 162/195 (83%)
Strand = Plus / Plus
Query: 53 ttctcggcgatgacgtcgtgcggcaacgagccaatcttcaaggacggcaaaggatgcggg 112
|||||| ||||||| || |||||||||||||| |||||||||||||| || || || ||
Sbjct: 324 ttctcgtcgatgacctcctgcggcaacgagcctatcttcaaggacgggaagggctgtggc 383
Query: 113 tcctgctaccagatccggtgcaaggcccaccctgcgtgctccggcgtggcggagacggtg 172
|| ||||||||||| | ||| ||||||||| ||||||||| |||||||||||
Sbjct: 384 tcatgctaccagataagatgcgtcaaccaccctgcctgctccggcaacccggagacggtg 443
Query: 173 atcatcacggacatgaactactacccggtggccccctaccacttcgacctgagcggcact 232
|||||||| ||||||||||||||||| || || |||||||||||||||||||||||
Sbjct: 444 atcatcaccgacatgaactactaccccgtttccaagtaccacttcgacctgagcggcacg 503
Query: 233 gccttcggggccatg 247
|| ||||| ||||||
Sbjct: 504 gcgttcggcgccatg 518
>gb|AU184077.1|AU184077 AU184077 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R0912, mRNA sequence
Length = 450
Score = 121 bits (61), Expect = 7e-025
Identities = 151/181 (83%)
Strand = Plus / Plus
Query: 60 cgatgacgtcgtgcggcaacgagccaatcttcaaggacggcaaaggatgcgggtcctgct 119
||||||| || ||||||||| ||||| | |||||||||||||| |||||||| || ||||
Sbjct: 10 cgatgacctcctgcggcaaccagccattgttcaaggacggcaagggatgcggctcttgct 69
Query: 120 accagatccggtgcaaggcccaccctgcgtgctccggcgtggcggagacggtgatcatca 179
|| ||||| | |||| ||| ||||||||||| | ||||||||||||||||||
Sbjct: 70 acaagatcagatgcaccaaggaccagtcgtgctccggcaggtcggagacggtgatcatca 129
Query: 180 cggacatgaactactacccggtggccccctaccacttcgacctgagcggcactgccttcg 239
| ||||||||||||||||||||||| || | |||||||||||| |||||||| || ||||
Sbjct: 130 ccgacatgaactactacccggtggctccgttccacttcgacctcagcggcacggcgttcg 189
Query: 240 g 240
|
Sbjct: 190 g 190
Score = 115 bits (58), Expect = 4e-023
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 380 gcggtgctggtggagtacgagaacggcgacggcgacgtggtgcaggtggacctgatggag 439
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 330 gcggtgctggtggagtacgaggacggcgacggcgacgtggtgcaggtggacctgatggag 389
Query: 440 tc 441
||
Sbjct: 390 tc 391
>dbj|AK060096.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-307-G02, full
insert sequence
Length = 1293
Score = 121 bits (61), Expect = 7e-025
Identities = 151/181 (83%)
Strand = Plus / Plus
Query: 60 cgatgacgtcgtgcggcaacgagccaatcttcaaggacggcaaaggatgcgggtcctgct 119
||||||| || ||||||||| ||||| | |||||||||||||| |||||||| || ||||
Sbjct: 388 cgatgacctcctgcggcaaccagccattgttcaaggacggcaagggatgcggctcttgct 447
Query: 120 accagatccggtgcaaggcccaccctgcgtgctccggcgtggcggagacggtgatcatca 179
|| ||||| | |||| ||| ||||||||||| | ||||||||||||||||||
Sbjct: 448 acaagatcagatgcaccaaggaccagtcgtgctccggcaggtcggagacggtgatcatca 507
Query: 180 cggacatgaactactacccggtggccccctaccacttcgacctgagcggcactgccttcg 239
| ||||||||||||||||||||||| || | |||||||||||| |||||||| || ||||
Sbjct: 508 ccgacatgaactactacccggtggctccgttccacttcgacctcagcggcacggcgttcg 567
Query: 240 g 240
|
Sbjct: 568 g 568
Score = 107 bits (54), Expect = 1e-020
Identities = 60/62 (96%)
Strand = Plus / Plus
Query: 380 gcggtgctggtggagtacgagaacggcgacggcgacgtggtgcaggtggacctgatggag 439
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 708 gcggtgctggtggagtacgaggacggcgacggcgacgtggtgcagatggacctgatggag 767
Query: 440 tc 441
||
Sbjct: 768 tc 769
>dbj|AK064012.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-124-H01, full
insert sequence
Length = 1794
Score = 121 bits (61), Expect = 7e-025
Identities = 151/181 (83%)
Strand = Plus / Plus
Query: 60 cgatgacgtcgtgcggcaacgagccaatcttcaaggacggcaaaggatgcgggtcctgct 119
||||||| || ||||||||| ||||| | |||||||||||||| |||||||| || ||||
Sbjct: 388 cgatgacctcctgcggcaaccagccattgttcaaggacggcaagggatgcggctcttgct 447
Query: 120 accagatccggtgcaaggcccaccctgcgtgctccggcgtggcggagacggtgatcatca 179
|| ||||| | |||| ||| ||||||||||| | ||||||||||||||||||
Sbjct: 448 acaagatcagatgcaccaaggaccagtcgtgctccggcaggtcggagacggtgatcatca 507
Query: 180 cggacatgaactactacccggtggccccctaccacttcgacctgagcggcactgccttcg 239
| ||||||||||||||||||||||| || | |||||||||||| |||||||| || ||||
Sbjct: 508 ccgacatgaactactacccggtggctccgttccacttcgacctcagcggcacggcgttcg 567
Query: 240 g 240
|
Sbjct: 568 g 568
Score = 115 bits (58), Expect = 4e-023
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 380 gcggtgctggtggagtacgagaacggcgacggcgacgtggtgcaggtggacctgatggag 439
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 708 gcggtgctggtggagtacgaggacggcgacggcgacgtggtgcaggtggacctgatggag 767
Query: 440 tc 441
||
Sbjct: 768 tc 769
>dbj|AK101357.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033035B15, full
insert sequence
Length = 1475
Score = 121 bits (61), Expect = 7e-025
Identities = 151/181 (83%)
Strand = Plus / Plus
Query: 60 cgatgacgtcgtgcggcaacgagccaatcttcaaggacggcaaaggatgcgggtcctgct 119
||||||| || ||||||||| ||||| | |||||||||||||| |||||||| || ||||
Sbjct: 570 cgatgacctcctgcggcaaccagccattgttcaaggacggcaagggatgcggctcttgct 629
Query: 120 accagatccggtgcaaggcccaccctgcgtgctccggcgtggcggagacggtgatcatca 179
|| ||||| | |||| ||| ||||||||||| | ||||||||||||||||||
Sbjct: 630 acaagatcagatgcaccaaggaccagtcgtgctccggcaggtcggagacggtgatcatca 689
Query: 180 cggacatgaactactacccggtggccccctaccacttcgacctgagcggcactgccttcg 239
| ||||||||||||||||||||||| || | |||||||||||| |||||||| || ||||
Sbjct: 690 ccgacatgaactactacccggtggctccgttccacttcgacctcagcggcacggcgttcg 749
Query: 240 g 240
|
Sbjct: 750 g 750
Score = 115 bits (58), Expect = 4e-023
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 380 gcggtgctggtggagtacgagaacggcgacggcgacgtggtgcaggtggacctgatggag 439
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 890 gcggtgctggtggagtacgaggacggcgacggcgacgtggtgcaggtggacctgatggag 949
Query: 440 tc 441
||
Sbjct: 950 tc 951
>dbj|AK103929.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-D11, full
insert sequence
Length = 1266
Score = 121 bits (61), Expect = 7e-025
Identities = 151/181 (83%)
Strand = Plus / Plus
Query: 60 cgatgacgtcgtgcggcaacgagccaatcttcaaggacggcaaaggatgcgggtcctgct 119
||||||| || ||||||||| ||||| | |||||||||||||| |||||||| || ||||
Sbjct: 382 cgatgacctcctgcggcaaccagccattgttcaaggacggcaagggatgcggctcttgct 441
Query: 120 accagatccggtgcaaggcccaccctgcgtgctccggcgtggcggagacggtgatcatca 179
|| ||||| | |||| ||| ||||||||||| | ||||||||||||||||||
Sbjct: 442 acaagatcagatgcaccaaggaccagtcgtgctccggcaggtcggagacggtgatcatca 501
Query: 180 cggacatgaactactacccggtggccccctaccacttcgacctgagcggcactgccttcg 239
| ||||||||||||||||||||||| || | |||||||||||| |||||||| || ||||
Sbjct: 502 ccgacatgaactactacccggtggctccgttccacttcgacctcagcggcacggcgttcg 561
Query: 240 g 240
|
Sbjct: 562 g 562
Score = 115 bits (58), Expect = 4e-023
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 380 gcggtgctggtggagtacgagaacggcgacggcgacgtggtgcaggtggacctgatggag 439
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 702 gcggtgctggtggagtacgaggacggcgacggcgacgtggtgcaggtggacctgatggag 761
Query: 440 tc 441
||
Sbjct: 762 tc 763
>dbj|AK105981.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-F12, full
insert sequence
Length = 1290
Score = 121 bits (61), Expect = 7e-025
Identities = 151/181 (83%)
Strand = Plus / Plus
Query: 60 cgatgacgtcgtgcggcaacgagccaatcttcaaggacggcaaaggatgcgggtcctgct 119
||||||| || ||||||||| ||||| | |||||||||||||| |||||||| || ||||
Sbjct: 389 cgatgacctcctgcggcaaccagccattgttcaaggacggcaagggatgcggctcttgct 448
Query: 120 accagatccggtgcaaggcccaccctgcgtgctccggcgtggcggagacggtgatcatca 179
|| ||||| | |||| ||| ||||||||||| | ||||||||||||||||||
Sbjct: 449 acaagatcagatgcaccaaggaccagtcgtgctccggcaggtcggagacggtgatcatca 508
Query: 180 cggacatgaactactacccggtggccccctaccacttcgacctgagcggcactgccttcg 239
| ||||||||||||||||||||||| || | |||||||||||| |||||||| || ||||
Sbjct: 509 ccgacatgaactactacccggtggctccgttccacttcgacctcagcggcacggcgttcg 568
Query: 240 g 240
|
Sbjct: 569 g 569
Score = 115 bits (58), Expect = 4e-023
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 380 gcggtgctggtggagtacgagaacggcgacggcgacgtggtgcaggtggacctgatggag 439
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 709 gcggtgctggtggagtacgaggacggcgacggcgacgtggtgcaggtggacctgatggag 768
Query: 440 tc 441
||
Sbjct: 769 tc 770
>ref|NM_197701.1| Oryza sativa (japonica cultivar-group) beta-expansin EXPB4
(OSJNBa0010C11.2), mRNA
Length = 1340
Score = 121 bits (61), Expect = 7e-025
Identities = 151/181 (83%)
Strand = Plus / Plus
Query: 60 cgatgacgtcgtgcggcaacgagccaatcttcaaggacggcaaaggatgcgggtcctgct 119
||||||| || ||||||||| ||||| | |||||||||||||| |||||||| || ||||
Sbjct: 376 cgatgacctcctgcggcaaccagccattgttcaaggacggcaagggatgcggctcttgct 435
Query: 120 accagatccggtgcaaggcccaccctgcgtgctccggcgtggcggagacggtgatcatca 179
|| ||||| | |||| ||| ||||||||||| | ||||||||||||||||||
Sbjct: 436 acaagatcagatgcaccaaggaccagtcgtgctccggcaggtcggagacggtgatcatca 495
Query: 180 cggacatgaactactacccggtggccccctaccacttcgacctgagcggcactgccttcg 239
| ||||||||||||||||||||||| || | |||||||||||| |||||||| || ||||
Sbjct: 496 ccgacatgaactactacccggtggctccgttccacttcgacctcagcggcacggcgttcg 555
Query: 240 g 240
|
Sbjct: 556 g 556
Score = 115 bits (58), Expect = 4e-023
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 380 gcggtgctggtggagtacgagaacggcgacggcgacgtggtgcaggtggacctgatggag 439
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 696 gcggtgctggtggagtacgaggacggcgacggcgacgtggtgcaggtggacctgatggag 755
Query: 440 tc 441
||
Sbjct: 756 tc 757
>gb|AC069300.7| Oryza sativa chromosome 10 BAC OSJNBa0010C11 genomic sequence,
complete sequence
Length = 147117
Score = 119 bits (60), Expect = 3e-024
Identities = 144/172 (83%)
Strand = Plus / Minus
Query: 139 ccaccctgcgtgctccggcgtggcggagacggtgatcatcacggacatgaactactaccc 198
||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct: 4905 ccaccctgcctgctccggcaacccggagacggtgatcatcaccgacatgaactactaccc 4846
Query: 199 ggtggccccctaccacttcgacctgagcggcactgccttcggggccatggcaaaagacga 258
|| || ||||||||||||||||||||||| || ||||| |||||||| || |
Sbjct: 4845 cgtttccaagtaccacttcgacctgagcggcacggcgttcggcgccatggccaagccggg 4786
Query: 259 gcacaacgacgagctaaggcacgcaggaatcatcgacatccagttcaagagg 310
||| |||||| |||| | ||||| || ||||||||||||||||||||||||
Sbjct: 4785 gcagaacgaccagctccgccacgccggcatcatcgacatccagttcaagagg 4734
Score = 115 bits (58), Expect = 4e-023
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 380 gcggtgctggtggagtacgagaacggcgacggcgacgtggtgcaggtggacctgatggag 439
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 16498 gcggtgctggtggagtacgaggacggcgacggcgacgtggtgcaggtggacctgatggag 16557
Query: 440 tc 441
||
Sbjct: 16558 tc 16559
Score = 107 bits (54), Expect = 1e-020
Identities = 84/94 (89%)
Strand = Plus / Plus
Query: 147 cgtgctccggcgtggcggagacggtgatcatcacggacatgaactactacccggtggccc 206
||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct: 15687 cgtgctccggcaggtcggagacggtgatcatcaccgacatgaactactacccggtggctc 15746
Query: 207 cctaccacttcgacctgagcggcactgccttcgg 240
| | |||||||||||| |||||||| || |||||
Sbjct: 15747 cgttccacttcgacctcagcggcacggcgttcgg 15780
Score = 87.7 bits (44), Expect = 1e-014
Identities = 56/60 (93%)
Strand = Plus / Minus
Query: 380 gcggtgctggtggagtacgagaacggcgacggcgacgtggtgcaggtggacctgatggag 439
||||||||||| ||||||||| |||||||||||||||||||||||||||| || ||||||
Sbjct: 4319 gcggtgctggttgagtacgaggacggcgacggcgacgtggtgcaggtggatctcatggag 4260
Score = 63.9 bits (32), Expect = 1e-007
Identities = 62/72 (86%)
Strand = Plus / Minus
Query: 53 ttctcggcgatgacgtcgtgcggcaacgagccaatcttcaaggacggcaaaggatgcggg 112
|||||| ||||||| || |||||||||||||| |||||||||||||| || || || ||
Sbjct: 5127 ttctcgtcgatgacctcctgcggcaacgagcctatcttcaaggacgggaagggctgtggc 5068
Query: 113 tcctgctaccag 124
|| |||||||||
Sbjct: 5067 tcatgctaccag 5056
Score = 60.0 bits (30), Expect = 2e-006
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 60 cgatgacgtcgtgcggcaacgagccaatcttcaaggacggcaaaggatgcgggtcctgct 119
||||||| || ||||||||| ||||| | |||||||||||||| |||||||| || ||||
Sbjct: 15351 cgatgacctcctgcggcaaccagccattgttcaaggacggcaagggatgcggctcttgct 15410
Query: 120 ac 121
||
Sbjct: 15411 ac 15412
Score = 58.0 bits (29), Expect = 9e-006
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 538 gcccttctcgctgcgcgtcaccaacgagtccggcaag 574
|||||||||||| ||| ||||||||||||||||||||
Sbjct: 4179 gcccttctcgctccgcatcaccaacgagtccggcaag 4143
>gb|C27175.1|C27175 C27175 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C51142_1A, mRNA sequence
Length = 462
Score = 115 bits (58), Expect = 4e-023
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 380 gcggtgctggtggagtacgagaacggcgacggcgacgtggtgcaggtggacctgatggag 439
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 250 gcggtgctggtggagtacgaggacggcgacggcgacgtggtgcaggtggacctgatggag 309
Query: 440 tc 441
||
Sbjct: 310 tc 311
Score = 107 bits (54), Expect = 1e-020
Identities = 84/94 (89%)
Strand = Plus / Plus
Query: 147 cgtgctccggcgtggcggagacggtgatcatcacggacatgaactactacccggtggccc 206
||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct: 17 cgtgctccggcaggtcggagacggtgatcatcaccgacatgaactactacccggtggctc 76
Query: 207 cctaccacttcgacctgagcggcactgccttcgg 240
| | |||||||||||| |||||||| || |||||
Sbjct: 77 cgttccacttcgacctcagcggcacggcgttcgg 110
>gb|C98131.1|C98131 C98131 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C0755_10Z, mRNA sequence
Length = 748
Score = 115 bits (58), Expect = 4e-023
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 380 gcggtgctggtggagtacgagaacggcgacggcgacgtggtgcaggtggacctgatggag 439
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 147 gcggtgctggtggagtacgaggacggcgacggcgacgtggtgcaggtggacctgatggag 206
Query: 440 tc 441
||
Sbjct: 207 tc 208
>gb|AU225903.1|AU225903 AU225903 Oryza sativa Koshihikari pistil Oryza sativa (japonica
cultivar-group) cDNA clone KP3-0953, mRNA sequence
Length = 572
Score = 115 bits (58), Expect = 4e-023
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 380 gcggtgctggtggagtacgagaacggcgacggcgacgtggtgcaggtggacctgatggag 439
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 20 gcggtgctggtggagtacgaggacggcgacggcgacgtggtgcaggtggacctgatggag 79
Query: 440 tc 441
||
Sbjct: 80 tc 81
>dbj|AK101806.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033066K12, full
insert sequence
Length = 1883
Score = 115 bits (58), Expect = 4e-023
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 380 gcggtgctggtggagtacgagaacggcgacggcgacgtggtgcaggtggacctgatggag 439
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1286 gcggtgctggtggagtacgaggacggcgacggcgacgtggtgcaggtggacctgatggag 1345
Query: 440 tc 441
||
Sbjct: 1346 tc 1347
Score = 107 bits (54), Expect = 1e-020
Identities = 84/94 (89%)
Strand = Plus / Plus
Query: 147 cgtgctccggcgtggcggagacggtgatcatcacggacatgaactactacccggtggccc 206
||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct: 475 cgtgctccggcaggtcggagacggtgatcatcaccgacatgaactactacccggtggctc 534
Query: 207 cctaccacttcgacctgagcggcactgccttcgg 240
| | |||||||||||| |||||||| || |||||
Sbjct: 535 cgttccacttcgacctcagcggcacggcgttcgg 568
Score = 60.0 bits (30), Expect = 2e-006
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 60 cgatgacgtcgtgcggcaacgagccaatcttcaaggacggcaaaggatgcgggtcctgct 119
||||||| || ||||||||| ||||| | |||||||||||||| |||||||| || ||||
Sbjct: 139 cgatgacctcctgcggcaaccagccattgttcaaggacggcaagggatgcggctcttgct 198
Query: 120 ac 121
||
Sbjct: 199 ac 200
>gb|AACV01022092.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg022092, whole
genome shotgun sequence
Length = 10831
Score = 115 bits (58), Expect = 4e-023
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 380 gcggtgctggtggagtacgagaacggcgacggcgacgtggtgcaggtggacctgatggag 439
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 7499 gcggtgctggtggagtacgaggacggcgacggcgacgtggtgcaggtggacctgatggag 7558
Query: 440 tc 441
||
Sbjct: 7559 tc 7560
Score = 107 bits (54), Expect = 1e-020
Identities = 84/94 (89%)
Strand = Plus / Plus
Query: 147 cgtgctccggcgtggcggagacggtgatcatcacggacatgaactactacccggtggccc 206
||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct: 6688 cgtgctccggcaggtcggagacggtgatcatcaccgacatgaactactacccggtggctc 6747
Query: 207 cctaccacttcgacctgagcggcactgccttcgg 240
| | |||||||||||| |||||||| || |||||
Sbjct: 6748 cgttccacttcgacctcagcggcacggcgttcgg 6781
Score = 60.0 bits (30), Expect = 2e-006
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 60 cgatgacgtcgtgcggcaacgagccaatcttcaaggacggcaaaggatgcgggtcctgct 119
||||||| || ||||||||| ||||| | |||||||||||||| |||||||| || ||||
Sbjct: 6352 cgatgacctcctgcggcaaccagccattgttcaaggacggcaagggatgcggctcttgct 6411
Query: 120 ac 121
||
Sbjct: 6412 ac 6413
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,927,261
Number of Sequences: 438736
Number of extensions: 1927261
Number of successful extensions: 43232
Number of sequences better than 0.5: 200
Number of HSP's better than 0.5 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 39392
Number of HSP's gapped (non-prelim): 3801
length of query: 912
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 891
effective length of database: 2,791,206,460
effective search space: 2486964955860
effective search space used: 2486964955860
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)