BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AB021176.2.1
(1318 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK106826.1| Oryza sativa (japonica cultivar-group) cDNA... 355 4e-095
ref|NT_107134.1| Oryza sativa (japonica cultivar-group) 355 4e-095
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 355 4e-095
gb|AC120307.3| Oryza sativa (japonica cultivar-group) chrom... 355 4e-095
gb|AC116949.11| Oryza sativa (japonica cultivar-group) chro... 355 4e-095
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 355 4e-095
gb|AACV01022354.1| Oryza sativa (japonica cultivar-group) c... 327 9e-087
gb|CH401257.1| Oryza sativa (japonica cultivar-group) chrom... 327 9e-087
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 327 9e-087
gb|AACV01012675.1| Oryza sativa (japonica cultivar-group) c... 129 4e-027
gb|CH401206.1| Oryza sativa (japonica cultivar-group) chrom... 129 4e-027
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 129 4e-027
dbj|AK122054.1| Oryza sativa (japonica cultivar-group) cDNA... 115 6e-023
gb|AC129717.3| Oryza sativa (japonica cultivar-group) chrom... 115 6e-023
gb|AC129716.3| Oryza sativa (japonica cultivar-group) chrom... 115 6e-023
gb|AACV01003099.1| Oryza sativa (japonica cultivar-group) c... 115 6e-023
gb|AACV01010747.1| Oryza sativa (japonica cultivar-group) c... 115 6e-023
gb|AACV01012676.1| Oryza sativa (japonica cultivar-group) c... 115 6e-023
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 115 6e-023
ref|NM_189426.1| Oryza sativa (japonica cultivar-group), p... 115 6e-023
ref|NT_079923.2| Oryza sativa (japonica cultivar-group) 115 6e-023
ref|NT_107220.1| Oryza sativa (japonica cultivar-group) 115 6e-023
ref|NT_079870.2| Oryza sativa (japonica cultivar-group) 115 6e-023
dbj|AP003448.3| Oryza sativa (japonica cultivar-group) geno... 115 6e-023
gb|CH401191.1| Oryza sativa (japonica cultivar-group) chrom... 115 6e-023
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 115 6e-023
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 115 6e-023
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 115 6e-023
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 115 6e-023
dbj|AK108077.1| Oryza sativa (japonica cultivar-group) cDNA... 109 4e-021
ref|XM_472395.1| Oryza sativa (japonica cultivar-group), p... 109 4e-021
ref|NT_107198.1| Oryza sativa (japonica cultivar-group) 109 4e-021
emb|AL662947.3|OSJN00148 Oryza sativa genomic DNA, chromoso... 109 4e-021
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 109 4e-021
ref|NM_189423.1| Oryza sativa (japonica cultivar-group), p... 107 2e-020
ref|NM_189425.1| Oryza sativa (japonica cultivar-group), p... 107 2e-020
gb|AACV01009695.1| Oryza sativa (japonica cultivar-group) c... 103 2e-019
gb|CH401189.1| Oryza sativa (japonica cultivar-group) chrom... 103 2e-019
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 103 2e-019
gb|AC077693.19| Oryza sativa chromosome 10 BAC OSJNBa0095C0... 86 6e-014
gb|AACV01022143.1| Oryza sativa (japonica cultivar-group) c... 86 6e-014
ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chr... 86 6e-014
gb|CH401254.1| Oryza sativa (japonica cultivar-group) chrom... 86 6e-014
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 86 6e-014
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 86 6e-014
dbj|AB108421.1| Oryza sativa (japonica cultivar-group) tran... 86 6e-014
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 86 6e-014
ref|NM_189428.1| Oryza sativa (japonica cultivar-group), p... 80 3e-012
dbj|AK062312.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.003
dbj|AK119604.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.003
dbj|AK121463.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.003
gb|AC117265.2| Oryza sativa (japonica cultivar-group) chrom... 50 0.003
gb|AC105770.2| Oryza sativa (japonica cultivar-group) chrom... 50 0.003
gb|AACV01012346.1| Oryza sativa (japonica cultivar-group) c... 50 0.003
ref|XM_475361.1| Oryza sativa (japonica cultivar-group), p... 50 0.003
ref|NT_107213.1| Oryza sativa (japonica cultivar-group) 50 0.003
gb|CB637189.1|CB637189 OSJNEa03H13.f OSJNEa Oryza sativa (j... 48 0.012
gb|AF485811.1| Oryza sativa BAC OSJNa0049F05, complete sequ... 48 0.012
dbj|AK121721.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.012
gb|AC125411.1| Genomic sequence for Oryza sativa, Nipponbar... 48 0.012
gb|AACV01005722.1| Oryza sativa (japonica cultivar-group) c... 48 0.012
ref|NT_107183.1| Oryza sativa (japonica cultivar-group) 48 0.012
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.012
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.012
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 48 0.012
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.012
gb|AC104848.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.048
dbj|AK102779.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.048
gb|AC136148.2| Oryza sativa (japonica cultivar-group) chrom... 46 0.048
ref|NT_107132.1| Oryza sativa (japonica cultivar-group) 46 0.048
gb|AACV01010658.1| Oryza sativa (japonica cultivar-group) c... 46 0.048
gb|AACV01023566.1| Oryza sativa (japonica cultivar-group) c... 46 0.048
ref|XM_474358.1| Oryza sativa (japonica cultivar-group), p... 46 0.048
ref|NT_107201.1| Oryza sativa (japonica cultivar-group) 46 0.048
gb|CH401264.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.048
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.048
emb|AL606668.2|OSJN00083 Oryza sativa genomic DNA, chromoso... 46 0.048
gb|AZ045757.1|AZ045757 nbeb0087K10r CUGI Rice BAC Library (... 44 0.19
gb|CB652487.1|CB652487 OSJNEc02I07.f OSJNEc Oryza sativa (j... 44 0.19
gb|CB657288.1|CB657288 OSJNEc12I07.f OSJNEc Oryza sativa (j... 44 0.19
dbj|AK067886.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.19
gb|AC079356.2| Oryza sativa (japonica cultivar-group) chrom... 44 0.19
gb|AACV01010753.1| Oryza sativa (japonica cultivar-group) c... 44 0.19
ref|XM_463663.1| Oryza sativa (japonica cultivar-group), p... 44 0.19
dbj|AP004223.2| Oryza sativa (japonica cultivar-group) geno... 44 0.19
dbj|AP004672.3| Oryza sativa (japonica cultivar-group) geno... 44 0.19
>dbj|AK106826.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-116-E12, full
insert sequence
Length = 1747
Score = 355 bits (179), Expect = 4e-095
Identities = 386/455 (84%)
Strand = Plus / Minus
Query: 556 ctctacgtcggcgccaggaagacggccgcgtgggacgacgacgtcgaccgcatggagctc 615
||||||||||||||||||||||| ||||| ||||||||||||||||||||| | ||| ||
Sbjct: 1383 ctctacgtcggcgccaggaagaccgccgcctgggacgacgacgtcgaccgcctcgaggtc 1324
Query: 616 accctggacggcgagcccgtgcgcctcctgccgggaaccgacgccgcgtggacgtccggc 675
| | | ||||||||||| |||| ||||| | || ||| |||| | ||||| |||| |
Sbjct: 1323 atcgtcgacggcgagccggtgctcctcccggaggacgccggcgccacctggacctccgcc 1264
Query: 676 gccgtgccggcgctgtccgtcacccgcaccagcgcggccaacggcgtgctcgtctcgctc 735
||||||||||||||| |||| || ||||||| ||||| |||||||||||||| |||||
Sbjct: 1263 gccgtgccggcgctgaccgtgacgcgcaccaaggcggcgaacggcgtgctcgtggcgctc 1204
Query: 736 gacggcaggttcaccatcagggccaacgccgtgcccatcacagaggaggagtccagggtg 795
||||| |||||| | ||||||||||||||||||||||| | ||||| || ||||||
Sbjct: 1203 gacgggcggttcaagttgagggccaacgccgtgcccatcaccgccgaggactcgagggtg 1144
Query: 796 caccggtacggcgtcacggccgacgactgcctcgcgcaccttgacctggccttcaagttc 855
||||||||||||||||| | ||||||||||||||| ||||| |||||||| |||||||||
Sbjct: 1143 caccggtacggcgtcaccggcgacgactgcctcgcccacctcgacctggcgttcaagttc 1084
Query: 856 ggcgcgctcaccgccgacgtgcacggcgtggtcggccagacgtaccgctccgactacgtc 915
| ||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 1083 gacgcgctcaccggcgacgtgcacggcgtcgtcggtcagacgtaccgctccgactacgtc 1024
Query: 916 aaccggttcgatgtcaaggcctcaatgcccaccatgggaggggacagcaactacaccacg 975
||| |||||| |||| ||| || |||||||| |||| || ||| || || | ||||
Sbjct: 1023 aacaagttcgacgtcagggcgtccatgcccacgctggggggcgaccacagcttcgccacc 964
Query: 976 tccagcctcttcgccgctgactgcgccgtggcgcg 1010
||| |||| |||||||| |||||||||||| ||||
Sbjct: 963 tccggcctgttcgccgccgactgcgccgtgtcgcg 929
Score = 301 bits (152), Expect = 5e-079
Identities = 194/208 (93%)
Strand = Plus / Minus
Query: 340 gtgtgcagcgtgccgggggcgtgcggcgacccgcgcttcatcggcggcgacggcaacgcc 399
||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 1608 gtgtgcaacgtgccgggggcgtgcggcgacccgaggttcatcggcggcgacggcaacgcc 1549
Query: 400 ttctacttccacggccgccgggacgccgacttctgcgtgctctccgaccgcgacctccac 459
||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1548 ttctacttccatggccggagggacgccgacttctgcgtcgtctccgaccgcgacctccac 1489
Query: 460 atcaacgcgcacttcatcggcaagcacggcgccgacggcatgtcccgggacttcacgtgg 519
||||||||||||||||||||||||| |||||||||||||||||| || |||||||| |||
Sbjct: 1488 atcaacgcgcacttcatcggcaagcgcggcgccgacggcatgtcgcgcgacttcacctgg 1429
Query: 520 atccaggccatcgccgtgctcttcgacg 547
||||||||||| ||||| ||||||||||
Sbjct: 1428 atccaggccattgccgtcctcttcgacg 1401
>ref|NT_107134.1| Oryza sativa (japonica cultivar-group)
Length = 568590
Score = 355 bits (179), Expect = 4e-095
Identities = 386/455 (84%)
Strand = Plus / Plus
Query: 556 ctctacgtcggcgccaggaagacggccgcgtgggacgacgacgtcgaccgcatggagctc 615
||||||||||||||||||||||| ||||| ||||||||||||||||||||| | ||| ||
Sbjct: 434233 ctctacgtcggcgccaggaagaccgccgcctgggacgacgacgtcgaccgcctcgaggtc 434292
Query: 616 accctggacggcgagcccgtgcgcctcctgccgggaaccgacgccgcgtggacgtccggc 675
| | | ||||||||||| |||| ||||| | || ||| |||| | ||||| |||| |
Sbjct: 434293 atcgtcgacggcgagccggtgctcctcccggaggacgccggcgccacctggacctccgcc 434352
Query: 676 gccgtgccggcgctgtccgtcacccgcaccagcgcggccaacggcgtgctcgtctcgctc 735
||||||||||||||| |||| || ||||||| ||||| |||||||||||||| |||||
Sbjct: 434353 gccgtgccggcgctgaccgtgacgcgcaccaaggcggcgaacggcgtgctcgtggcgctc 434412
Query: 736 gacggcaggttcaccatcagggccaacgccgtgcccatcacagaggaggagtccagggtg 795
||||| |||||| | ||||||||||||||||||||||| | ||||| || ||||||
Sbjct: 434413 gacgggcggttcaagttgagggccaacgccgtgcccatcaccgccgaggactcgagggtg 434472
Query: 796 caccggtacggcgtcacggccgacgactgcctcgcgcaccttgacctggccttcaagttc 855
||||||||||||||||| | ||||||||||||||| ||||| |||||||| |||||||||
Sbjct: 434473 caccggtacggcgtcaccggcgacgactgcctcgcccacctcgacctggcgttcaagttc 434532
Query: 856 ggcgcgctcaccgccgacgtgcacggcgtggtcggccagacgtaccgctccgactacgtc 915
| ||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 434533 gacgcgctcaccggcgacgtgcacggcgtcgtcggtcagacgtaccgctccgactacgtc 434592
Query: 916 aaccggttcgatgtcaaggcctcaatgcccaccatgggaggggacagcaactacaccacg 975
||| |||||| |||| ||| || |||||||| |||| || ||| || || | ||||
Sbjct: 434593 aacaagttcgacgtcagggcgtccatgcccacgctggggggcgaccacagcttcgccacc 434652
Query: 976 tccagcctcttcgccgctgactgcgccgtggcgcg 1010
||| |||| |||||||| |||||||||||| ||||
Sbjct: 434653 tccggcctgttcgccgccgactgcgccgtgtcgcg 434687
Score = 301 bits (152), Expect = 5e-079
Identities = 194/208 (93%)
Strand = Plus / Plus
Query: 340 gtgtgcagcgtgccgggggcgtgcggcgacccgcgcttcatcggcggcgacggcaacgcc 399
||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 434008 gtgtgcaacgtgccgggggcgtgcggcgacccgaggttcatcggcggcgacggcaacgcc 434067
Query: 400 ttctacttccacggccgccgggacgccgacttctgcgtgctctccgaccgcgacctccac 459
||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 434068 ttctacttccatggccggagggacgccgacttctgcgtcgtctccgaccgcgacctccac 434127
Query: 460 atcaacgcgcacttcatcggcaagcacggcgccgacggcatgtcccgggacttcacgtgg 519
||||||||||||||||||||||||| |||||||||||||||||| || |||||||| |||
Sbjct: 434128 atcaacgcgcacttcatcggcaagcgcggcgccgacggcatgtcgcgcgacttcacctgg 434187
Query: 520 atccaggccatcgccgtgctcttcgacg 547
||||||||||| ||||| ||||||||||
Sbjct: 434188 atccaggccattgccgtcctcttcgacg 434215
Score = 54.0 bits (27), Expect = 2e-004
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 240 ccgtaagctctacccttactgccccggcaagccgatggagtgccccg 286
||||||||||||||| |||||| ||| |||| ||||||||||||||
Sbjct: 433692 ccgtaagctctacccctactgctccgccaagatgatggagtgccccg 433738
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
sequence
Length = 28386948
Score = 355 bits (179), Expect = 4e-095
Identities = 386/455 (84%)
Strand = Plus / Plus
Query: 556 ctctacgtcggcgccaggaagacggccgcgtgggacgacgacgtcgaccgcatggagctc 615
||||||||||||||||||||||| ||||| ||||||||||||||||||||| | ||| ||
Sbjct: 2362678 ctctacgtcggcgccaggaagaccgccgcctgggacgacgacgtcgaccgcctcgaggtc 2362737
Query: 616 accctggacggcgagcccgtgcgcctcctgccgggaaccgacgccgcgtggacgtccggc 675
| | | ||||||||||| |||| ||||| | || ||| |||| | ||||| |||| |
Sbjct: 2362738 atcgtcgacggcgagccggtgctcctcccggaggacgccggcgccacctggacctccgcc 2362797
Query: 676 gccgtgccggcgctgtccgtcacccgcaccagcgcggccaacggcgtgctcgtctcgctc 735
||||||||||||||| |||| || ||||||| ||||| |||||||||||||| |||||
Sbjct: 2362798 gccgtgccggcgctgaccgtgacgcgcaccaaggcggcgaacggcgtgctcgtggcgctc 2362857
Query: 736 gacggcaggttcaccatcagggccaacgccgtgcccatcacagaggaggagtccagggtg 795
||||| |||||| | ||||||||||||||||||||||| | ||||| || ||||||
Sbjct: 2362858 gacgggcggttcaagttgagggccaacgccgtgcccatcaccgccgaggactcgagggtg 2362917
Query: 796 caccggtacggcgtcacggccgacgactgcctcgcgcaccttgacctggccttcaagttc 855
||||||||||||||||| | ||||||||||||||| ||||| |||||||| |||||||||
Sbjct: 2362918 caccggtacggcgtcaccggcgacgactgcctcgcccacctcgacctggcgttcaagttc 2362977
Query: 856 ggcgcgctcaccgccgacgtgcacggcgtggtcggccagacgtaccgctccgactacgtc 915
| ||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 2362978 gacgcgctcaccggcgacgtgcacggcgtcgtcggtcagacgtaccgctccgactacgtc 2363037
Query: 916 aaccggttcgatgtcaaggcctcaatgcccaccatgggaggggacagcaactacaccacg 975
||| |||||| |||| ||| || |||||||| |||| || ||| || || | ||||
Sbjct: 2363038 aacaagttcgacgtcagggcgtccatgcccacgctggggggcgaccacagcttcgccacc 2363097
Query: 976 tccagcctcttcgccgctgactgcgccgtggcgcg 1010
||| |||| |||||||| |||||||||||| ||||
Sbjct: 2363098 tccggcctgttcgccgccgactgcgccgtgtcgcg 2363132
Score = 301 bits (152), Expect = 5e-079
Identities = 194/208 (93%)
Strand = Plus / Plus
Query: 340 gtgtgcagcgtgccgggggcgtgcggcgacccgcgcttcatcggcggcgacggcaacgcc 399
||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 2362453 gtgtgcaacgtgccgggggcgtgcggcgacccgaggttcatcggcggcgacggcaacgcc 2362512
Query: 400 ttctacttccacggccgccgggacgccgacttctgcgtgctctccgaccgcgacctccac 459
||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 2362513 ttctacttccatggccggagggacgccgacttctgcgtcgtctccgaccgcgacctccac 2362572
Query: 460 atcaacgcgcacttcatcggcaagcacggcgccgacggcatgtcccgggacttcacgtgg 519
||||||||||||||||||||||||| |||||||||||||||||| || |||||||| |||
Sbjct: 2362573 atcaacgcgcacttcatcggcaagcgcggcgccgacggcatgtcgcgcgacttcacctgg 2362632
Query: 520 atccaggccatcgccgtgctcttcgacg 547
||||||||||| ||||| ||||||||||
Sbjct: 2362633 atccaggccattgccgtcctcttcgacg 2362660
Score = 54.0 bits (27), Expect = 2e-004
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 240 ccgtaagctctacccttactgccccggcaagccgatggagtgccccg 286
||||||||||||||| |||||| ||| |||| ||||||||||||||
Sbjct: 2362137 ccgtaagctctacccctactgctccgccaagatgatggagtgccccg 2362183
Score = 46.1 bits (23), Expect = 0.048
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 871 gacgtgcacggcgtggtcggcca 893
|||||||||||||||||||||||
Sbjct: 21447898 gacgtgcacggcgtggtcggcca 21447876
>gb|AC120307.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0074E19
map R1938, complete sequence
Length = 160847
Score = 355 bits (179), Expect = 4e-095
Identities = 386/455 (84%)
Strand = Plus / Plus
Query: 556 ctctacgtcggcgccaggaagacggccgcgtgggacgacgacgtcgaccgcatggagctc 615
||||||||||||||||||||||| ||||| ||||||||||||||||||||| | ||| ||
Sbjct: 138677 ctctacgtcggcgccaggaagaccgccgcctgggacgacgacgtcgaccgcctcgaggtc 138736
Query: 616 accctggacggcgagcccgtgcgcctcctgccgggaaccgacgccgcgtggacgtccggc 675
| | | ||||||||||| |||| ||||| | || ||| |||| | ||||| |||| |
Sbjct: 138737 atcgtcgacggcgagccggtgctcctcccggaggacgccggcgccacctggacctccgcc 138796
Query: 676 gccgtgccggcgctgtccgtcacccgcaccagcgcggccaacggcgtgctcgtctcgctc 735
||||||||||||||| |||| || ||||||| ||||| |||||||||||||| |||||
Sbjct: 138797 gccgtgccggcgctgaccgtgacgcgcaccaaggcggcgaacggcgtgctcgtggcgctc 138856
Query: 736 gacggcaggttcaccatcagggccaacgccgtgcccatcacagaggaggagtccagggtg 795
||||| |||||| | ||||||||||||||||||||||| | ||||| || ||||||
Sbjct: 138857 gacgggcggttcaagttgagggccaacgccgtgcccatcaccgccgaggactcgagggtg 138916
Query: 796 caccggtacggcgtcacggccgacgactgcctcgcgcaccttgacctggccttcaagttc 855
||||||||||||||||| | ||||||||||||||| ||||| |||||||| |||||||||
Sbjct: 138917 caccggtacggcgtcaccggcgacgactgcctcgcccacctcgacctggcgttcaagttc 138976
Query: 856 ggcgcgctcaccgccgacgtgcacggcgtggtcggccagacgtaccgctccgactacgtc 915
| ||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 138977 gacgcgctcaccggcgacgtgcacggcgtcgtcggtcagacgtaccgctccgactacgtc 139036
Query: 916 aaccggttcgatgtcaaggcctcaatgcccaccatgggaggggacagcaactacaccacg 975
||| |||||| |||| ||| || |||||||| |||| || ||| || || | ||||
Sbjct: 139037 aacaagttcgacgtcagggcgtccatgcccacgctggggggcgaccacagcttcgccacc 139096
Query: 976 tccagcctcttcgccgctgactgcgccgtggcgcg 1010
||| |||| |||||||| |||||||||||| ||||
Sbjct: 139097 tccggcctgttcgccgccgactgcgccgtgtcgcg 139131
Score = 301 bits (152), Expect = 5e-079
Identities = 194/208 (93%)
Strand = Plus / Plus
Query: 340 gtgtgcagcgtgccgggggcgtgcggcgacccgcgcttcatcggcggcgacggcaacgcc 399
||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 138452 gtgtgcaacgtgccgggggcgtgcggcgacccgaggttcatcggcggcgacggcaacgcc 138511
Query: 400 ttctacttccacggccgccgggacgccgacttctgcgtgctctccgaccgcgacctccac 459
||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 138512 ttctacttccatggccggagggacgccgacttctgcgtcgtctccgaccgcgacctccac 138571
Query: 460 atcaacgcgcacttcatcggcaagcacggcgccgacggcatgtcccgggacttcacgtgg 519
||||||||||||||||||||||||| |||||||||||||||||| || |||||||| |||
Sbjct: 138572 atcaacgcgcacttcatcggcaagcgcggcgccgacggcatgtcgcgcgacttcacctgg 138631
Query: 520 atccaggccatcgccgtgctcttcgacg 547
||||||||||| ||||| ||||||||||
Sbjct: 138632 atccaggccattgccgtcctcttcgacg 138659
Score = 54.0 bits (27), Expect = 2e-004
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 240 ccgtaagctctacccttactgccccggcaagccgatggagtgccccg 286
||||||||||||||| |||||| ||| |||| ||||||||||||||
Sbjct: 138136 ccgtaagctctacccctactgctccgccaagatgatggagtgccccg 138182
>gb|AC116949.11| Oryza sativa (japonica cultivar-group) chromosome 11 clone
OSJNBa0040B10 map R2918, complete sequence
Length = 149132
Score = 355 bits (179), Expect = 4e-095
Identities = 386/455 (84%)
Strand = Plus / Plus
Query: 556 ctctacgtcggcgccaggaagacggccgcgtgggacgacgacgtcgaccgcatggagctc 615
||||||||||||||||||||||| ||||| ||||||||||||||||||||| | ||| ||
Sbjct: 14820 ctctacgtcggcgccaggaagaccgccgcctgggacgacgacgtcgaccgcctcgaggtc 14879
Query: 616 accctggacggcgagcccgtgcgcctcctgccgggaaccgacgccgcgtggacgtccggc 675
| | | ||||||||||| |||| ||||| | || ||| |||| | ||||| |||| |
Sbjct: 14880 atcgtcgacggcgagccggtgctcctcccggaggacgccggcgccacctggacctccgcc 14939
Query: 676 gccgtgccggcgctgtccgtcacccgcaccagcgcggccaacggcgtgctcgtctcgctc 735
||||||||||||||| |||| || ||||||| ||||| |||||||||||||| |||||
Sbjct: 14940 gccgtgccggcgctgaccgtgacgcgcaccaaggcggcgaacggcgtgctcgtggcgctc 14999
Query: 736 gacggcaggttcaccatcagggccaacgccgtgcccatcacagaggaggagtccagggtg 795
||||| |||||| | ||||||||||||||||||||||| | ||||| || ||||||
Sbjct: 15000 gacgggcggttcaagttgagggccaacgccgtgcccatcaccgccgaggactcgagggtg 15059
Query: 796 caccggtacggcgtcacggccgacgactgcctcgcgcaccttgacctggccttcaagttc 855
||||||||||||||||| | ||||||||||||||| ||||| |||||||| |||||||||
Sbjct: 15060 caccggtacggcgtcaccggcgacgactgcctcgcccacctcgacctggcgttcaagttc 15119
Query: 856 ggcgcgctcaccgccgacgtgcacggcgtggtcggccagacgtaccgctccgactacgtc 915
| ||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 15120 gacgcgctcaccggcgacgtgcacggcgtcgtcggtcagacgtaccgctccgactacgtc 15179
Query: 916 aaccggttcgatgtcaaggcctcaatgcccaccatgggaggggacagcaactacaccacg 975
||| |||||| |||| ||| || |||||||| |||| || ||| || || | ||||
Sbjct: 15180 aacaagttcgacgtcagggcgtccatgcccacgctggggggcgaccacagcttcgccacc 15239
Query: 976 tccagcctcttcgccgctgactgcgccgtggcgcg 1010
||| |||| |||||||| |||||||||||| ||||
Sbjct: 15240 tccggcctgttcgccgccgactgcgccgtgtcgcg 15274
Score = 301 bits (152), Expect = 5e-079
Identities = 194/208 (93%)
Strand = Plus / Plus
Query: 340 gtgtgcagcgtgccgggggcgtgcggcgacccgcgcttcatcggcggcgacggcaacgcc 399
||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 14595 gtgtgcaacgtgccgggggcgtgcggcgacccgaggttcatcggcggcgacggcaacgcc 14654
Query: 400 ttctacttccacggccgccgggacgccgacttctgcgtgctctccgaccgcgacctccac 459
||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 14655 ttctacttccatggccggagggacgccgacttctgcgtcgtctccgaccgcgacctccac 14714
Query: 460 atcaacgcgcacttcatcggcaagcacggcgccgacggcatgtcccgggacttcacgtgg 519
||||||||||||||||||||||||| |||||||||||||||||| || |||||||| |||
Sbjct: 14715 atcaacgcgcacttcatcggcaagcgcggcgccgacggcatgtcgcgcgacttcacctgg 14774
Query: 520 atccaggccatcgccgtgctcttcgacg 547
||||||||||| ||||| ||||||||||
Sbjct: 14775 atccaggccattgccgtcctcttcgacg 14802
Score = 54.0 bits (27), Expect = 2e-004
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 240 ccgtaagctctacccttactgccccggcaagccgatggagtgccccg 286
||||||||||||||| |||||| ||| |||| ||||||||||||||
Sbjct: 14279 ccgtaagctctacccctactgctccgccaagatgatggagtgccccg 14325
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
Length = 28369397
Score = 355 bits (179), Expect = 4e-095
Identities = 386/455 (84%)
Strand = Plus / Plus
Query: 556 ctctacgtcggcgccaggaagacggccgcgtgggacgacgacgtcgaccgcatggagctc 615
||||||||||||||||||||||| ||||| ||||||||||||||||||||| | ||| ||
Sbjct: 2370459 ctctacgtcggcgccaggaagaccgccgcctgggacgacgacgtcgaccgcctcgaggtc 2370518
Query: 616 accctggacggcgagcccgtgcgcctcctgccgggaaccgacgccgcgtggacgtccggc 675
| | | ||||||||||| |||| ||||| | || ||| |||| | ||||| |||| |
Sbjct: 2370519 atcgtcgacggcgagccggtgctcctcccggaggacgccggcgccacctggacctccgcc 2370578
Query: 676 gccgtgccggcgctgtccgtcacccgcaccagcgcggccaacggcgtgctcgtctcgctc 735
||||||||||||||| |||| || ||||||| ||||| |||||||||||||| |||||
Sbjct: 2370579 gccgtgccggcgctgaccgtgacgcgcaccaaggcggcgaacggcgtgctcgtggcgctc 2370638
Query: 736 gacggcaggttcaccatcagggccaacgccgtgcccatcacagaggaggagtccagggtg 795
||||| |||||| | ||||||||||||||||||||||| | ||||| || ||||||
Sbjct: 2370639 gacgggcggttcaagttgagggccaacgccgtgcccatcaccgccgaggactcgagggtg 2370698
Query: 796 caccggtacggcgtcacggccgacgactgcctcgcgcaccttgacctggccttcaagttc 855
||||||||||||||||| | ||||||||||||||| ||||| |||||||| |||||||||
Sbjct: 2370699 caccggtacggcgtcaccggcgacgactgcctcgcccacctcgacctggcgttcaagttc 2370758
Query: 856 ggcgcgctcaccgccgacgtgcacggcgtggtcggccagacgtaccgctccgactacgtc 915
| ||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 2370759 gacgcgctcaccggcgacgtgcacggcgtcgtcggtcagacgtaccgctccgactacgtc 2370818
Query: 916 aaccggttcgatgtcaaggcctcaatgcccaccatgggaggggacagcaactacaccacg 975
||| |||||| |||| ||| || |||||||| |||| || ||| || || | ||||
Sbjct: 2370819 aacaagttcgacgtcagggcgtccatgcccacgctggggggcgaccacagcttcgccacc 2370878
Query: 976 tccagcctcttcgccgctgactgcgccgtggcgcg 1010
||| |||| |||||||| |||||||||||| ||||
Sbjct: 2370879 tccggcctgttcgccgccgactgcgccgtgtcgcg 2370913
Score = 301 bits (152), Expect = 5e-079
Identities = 194/208 (93%)
Strand = Plus / Plus
Query: 340 gtgtgcagcgtgccgggggcgtgcggcgacccgcgcttcatcggcggcgacggcaacgcc 399
||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 2370234 gtgtgcaacgtgccgggggcgtgcggcgacccgaggttcatcggcggcgacggcaacgcc 2370293
Query: 400 ttctacttccacggccgccgggacgccgacttctgcgtgctctccgaccgcgacctccac 459
||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 2370294 ttctacttccatggccggagggacgccgacttctgcgtcgtctccgaccgcgacctccac 2370353
Query: 460 atcaacgcgcacttcatcggcaagcacggcgccgacggcatgtcccgggacttcacgtgg 519
||||||||||||||||||||||||| |||||||||||||||||| || |||||||| |||
Sbjct: 2370354 atcaacgcgcacttcatcggcaagcgcggcgccgacggcatgtcgcgcgacttcacctgg 2370413
Query: 520 atccaggccatcgccgtgctcttcgacg 547
||||||||||| ||||| ||||||||||
Sbjct: 2370414 atccaggccattgccgtcctcttcgacg 2370441
Score = 54.0 bits (27), Expect = 2e-004
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 240 ccgtaagctctacccttactgccccggcaagccgatggagtgccccg 286
||||||||||||||| |||||| ||| |||| ||||||||||||||
Sbjct: 2369918 ccgtaagctctacccctactgctccgccaagatgatggagtgccccg 2369964
Score = 46.1 bits (23), Expect = 0.048
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 871 gacgtgcacggcgtggtcggcca 893
|||||||||||||||||||||||
Sbjct: 21758097 gacgtgcacggcgtggtcggcca 21758075
>gb|AACV01022354.1| Oryza sativa (japonica cultivar-group) chromosome 11 Ctg022354, whole
genome shotgun sequence
Length = 43101
Score = 327 bits (165), Expect = 9e-087
Identities = 337/393 (85%), Gaps = 1/393 (0%)
Strand = Plus / Plus
Query: 556 ctctacgtcggcgccaggaagacggccgcgtgggacgacgacgtcgaccgcatggagctc 615
||||||||||||||||||||||| ||||| ||||||||||||||||||||| | ||| ||
Sbjct: 13963 ctctacgtcggcgccaggaagaccgccgcctgggacgacgacgtcgaccgcctcgaggtc 14022
Query: 616 accctggacggcgagcccgtgcgcctcctgccgggaaccgacgccgcgtggacgtccggc 675
| | | ||||||||||| |||| ||||| | || ||| |||| | ||||| |||| |
Sbjct: 14023 atcgtcgacggcgagccggtgctcctcccggaggacgccggcgccacctggacctccgcc 14082
Query: 676 gcc-gtgccggcgctgtccgtcacccgcaccagcgcggccaacggcgtgctcgtctcgct 734
||| |||||||||||| |||| || ||||||| ||||| |||||||||||||| ||||
Sbjct: 14083 gcccgtgccggcgctgaccgtgacgcgcaccaaggcggcgaacggcgtgctcgtggcgct 14142
Query: 735 cgacggcaggttcaccatcagggccaacgccgtgcccatcacagaggaggagtccagggt 794
|||||| |||||| | ||||||||||||||||||||||| | ||||| || |||||
Sbjct: 14143 cgacgggcggttcaagttgagggccaacgccgtgcccatcaccgccgaggactcgagggt 14202
Query: 795 gcaccggtacggcgtcacggccgacgactgcctcgcgcaccttgacctggccttcaagtt 854
|||||||||||||||||| | ||||||||||||||| ||||| |||||||| ||||||||
Sbjct: 14203 gcaccggtacggcgtcaccggcgacgactgcctcgcccacctcgacctggcgttcaagtt 14262
Query: 855 cggcgcgctcaccgccgacgtgcacggcgtggtcggccagacgtaccgctccgactacgt 914
|| ||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 14263 cgacgcgctcaccggcgacgtgcacggcgtcgtcggtcagacgtaccgctccgactacgt 14322
Query: 915 caaccggttcgatgtcaaggcctcaatgcccac 947
|||| |||||| |||| ||| || ||||||||
Sbjct: 14323 caacaagttcgacgtcagggcgtccatgcccac 14355
Score = 301 bits (152), Expect = 5e-079
Identities = 194/208 (93%)
Strand = Plus / Plus
Query: 340 gtgtgcagcgtgccgggggcgtgcggcgacccgcgcttcatcggcggcgacggcaacgcc 399
||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 13738 gtgtgcaacgtgccgggggcgtgcggcgacccgaggttcatcggcggcgacggcaacgcc 13797
Query: 400 ttctacttccacggccgccgggacgccgacttctgcgtgctctccgaccgcgacctccac 459
||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 13798 ttctacttccatggccggagggacgccgacttctgcgtcgtctccgaccgcgacctccac 13857
Query: 460 atcaacgcgcacttcatcggcaagcacggcgccgacggcatgtcccgggacttcacgtgg 519
||||||||||||||||||||||||| |||||||||||||||||| || |||||||| |||
Sbjct: 13858 atcaacgcgcacttcatcggcaagcgcggcgccgacggcatgtcgcgcgacttcacctgg 13917
Query: 520 atccaggccatcgccgtgctcttcgacg 547
||||||||||| ||||| ||||||||||
Sbjct: 13918 atccaggccattgccgtcctcttcgacg 13945
Score = 54.0 bits (27), Expect = 2e-004
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 240 ccgtaagctctacccttactgccccggcaagccgatggagtgccccg 286
||||||||||||||| |||||| ||| |||| ||||||||||||||
Sbjct: 13422 ccgtaagctctacccctactgctccgccaagatgatggagtgccccg 13468
>gb|CH401257.1| Oryza sativa (japonica cultivar-group) chromosome 11 scaffold000094 genomic
scaffold, whole genome shotgun sequence
Length = 4775249
Score = 327 bits (165), Expect = 9e-087
Identities = 337/393 (85%), Gaps = 1/393 (0%)
Strand = Plus / Plus
Query: 556 ctctacgtcggcgccaggaagacggccgcgtgggacgacgacgtcgaccgcatggagctc 615
||||||||||||||||||||||| ||||| ||||||||||||||||||||| | ||| ||
Sbjct: 2201481 ctctacgtcggcgccaggaagaccgccgcctgggacgacgacgtcgaccgcctcgaggtc 2201540
Query: 616 accctggacggcgagcccgtgcgcctcctgccgggaaccgacgccgcgtggacgtccggc 675
| | | ||||||||||| |||| ||||| | || ||| |||| | ||||| |||| |
Sbjct: 2201541 atcgtcgacggcgagccggtgctcctcccggaggacgccggcgccacctggacctccgcc 2201600
Query: 676 gcc-gtgccggcgctgtccgtcacccgcaccagcgcggccaacggcgtgctcgtctcgct 734
||| |||||||||||| |||| || ||||||| ||||| |||||||||||||| ||||
Sbjct: 2201601 gcccgtgccggcgctgaccgtgacgcgcaccaaggcggcgaacggcgtgctcgtggcgct 2201660
Query: 735 cgacggcaggttcaccatcagggccaacgccgtgcccatcacagaggaggagtccagggt 794
|||||| |||||| | ||||||||||||||||||||||| | ||||| || |||||
Sbjct: 2201661 cgacgggcggttcaagttgagggccaacgccgtgcccatcaccgccgaggactcgagggt 2201720
Query: 795 gcaccggtacggcgtcacggccgacgactgcctcgcgcaccttgacctggccttcaagtt 854
|||||||||||||||||| | ||||||||||||||| ||||| |||||||| ||||||||
Sbjct: 2201721 gcaccggtacggcgtcaccggcgacgactgcctcgcccacctcgacctggcgttcaagtt 2201780
Query: 855 cggcgcgctcaccgccgacgtgcacggcgtggtcggccagacgtaccgctccgactacgt 914
|| ||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 2201781 cgacgcgctcaccggcgacgtgcacggcgtcgtcggtcagacgtaccgctccgactacgt 2201840
Query: 915 caaccggttcgatgtcaaggcctcaatgcccac 947
|||| |||||| |||| ||| || ||||||||
Sbjct: 2201841 caacaagttcgacgtcagggcgtccatgcccac 2201873
Score = 301 bits (152), Expect = 5e-079
Identities = 194/208 (93%)
Strand = Plus / Plus
Query: 340 gtgtgcagcgtgccgggggcgtgcggcgacccgcgcttcatcggcggcgacggcaacgcc 399
||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 2201256 gtgtgcaacgtgccgggggcgtgcggcgacccgaggttcatcggcggcgacggcaacgcc 2201315
Query: 400 ttctacttccacggccgccgggacgccgacttctgcgtgctctccgaccgcgacctccac 459
||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 2201316 ttctacttccatggccggagggacgccgacttctgcgtcgtctccgaccgcgacctccac 2201375
Query: 460 atcaacgcgcacttcatcggcaagcacggcgccgacggcatgtcccgggacttcacgtgg 519
||||||||||||||||||||||||| |||||||||||||||||| || |||||||| |||
Sbjct: 2201376 atcaacgcgcacttcatcggcaagcgcggcgccgacggcatgtcgcgcgacttcacctgg 2201435
Query: 520 atccaggccatcgccgtgctcttcgacg 547
||||||||||| ||||| ||||||||||
Sbjct: 2201436 atccaggccattgccgtcctcttcgacg 2201463
Score = 54.0 bits (27), Expect = 2e-004
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 240 ccgtaagctctacccttactgccccggcaagccgatggagtgccccg 286
||||||||||||||| |||||| ||| |||| ||||||||||||||
Sbjct: 2200940 ccgtaagctctacccctactgctccgccaagatgatggagtgccccg 2200986
>gb|CM000148.1| Oryza sativa (japonica cultivar-group) chromosome 11, whole genome shotgun
sequence
Length = 22593549
Score = 327 bits (165), Expect = 9e-087
Identities = 337/393 (85%), Gaps = 1/393 (0%)
Strand = Plus / Plus
Query: 556 ctctacgtcggcgccaggaagacggccgcgtgggacgacgacgtcgaccgcatggagctc 615
||||||||||||||||||||||| ||||| ||||||||||||||||||||| | ||| ||
Sbjct: 2503773 ctctacgtcggcgccaggaagaccgccgcctgggacgacgacgtcgaccgcctcgaggtc 2503832
Query: 616 accctggacggcgagcccgtgcgcctcctgccgggaaccgacgccgcgtggacgtccggc 675
| | | ||||||||||| |||| ||||| | || ||| |||| | ||||| |||| |
Sbjct: 2503833 atcgtcgacggcgagccggtgctcctcccggaggacgccggcgccacctggacctccgcc 2503892
Query: 676 gcc-gtgccggcgctgtccgtcacccgcaccagcgcggccaacggcgtgctcgtctcgct 734
||| |||||||||||| |||| || ||||||| ||||| |||||||||||||| ||||
Sbjct: 2503893 gcccgtgccggcgctgaccgtgacgcgcaccaaggcggcgaacggcgtgctcgtggcgct 2503952
Query: 735 cgacggcaggttcaccatcagggccaacgccgtgcccatcacagaggaggagtccagggt 794
|||||| |||||| | ||||||||||||||||||||||| | ||||| || |||||
Sbjct: 2503953 cgacgggcggttcaagttgagggccaacgccgtgcccatcaccgccgaggactcgagggt 2504012
Query: 795 gcaccggtacggcgtcacggccgacgactgcctcgcgcaccttgacctggccttcaagtt 854
|||||||||||||||||| | ||||||||||||||| ||||| |||||||| ||||||||
Sbjct: 2504013 gcaccggtacggcgtcaccggcgacgactgcctcgcccacctcgacctggcgttcaagtt 2504072
Query: 855 cggcgcgctcaccgccgacgtgcacggcgtggtcggccagacgtaccgctccgactacgt 914
|| ||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 2504073 cgacgcgctcaccggcgacgtgcacggcgtcgtcggtcagacgtaccgctccgactacgt 2504132
Query: 915 caaccggttcgatgtcaaggcctcaatgcccac 947
|||| |||||| |||| ||| || ||||||||
Sbjct: 2504133 caacaagttcgacgtcagggcgtccatgcccac 2504165
Score = 301 bits (152), Expect = 5e-079
Identities = 194/208 (93%)
Strand = Plus / Plus
Query: 340 gtgtgcagcgtgccgggggcgtgcggcgacccgcgcttcatcggcggcgacggcaacgcc 399
||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 2503548 gtgtgcaacgtgccgggggcgtgcggcgacccgaggttcatcggcggcgacggcaacgcc 2503607
Query: 400 ttctacttccacggccgccgggacgccgacttctgcgtgctctccgaccgcgacctccac 459
||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 2503608 ttctacttccatggccggagggacgccgacttctgcgtcgtctccgaccgcgacctccac 2503667
Query: 460 atcaacgcgcacttcatcggcaagcacggcgccgacggcatgtcccgggacttcacgtgg 519
||||||||||||||||||||||||| |||||||||||||||||| || |||||||| |||
Sbjct: 2503668 atcaacgcgcacttcatcggcaagcgcggcgccgacggcatgtcgcgcgacttcacctgg 2503727
Query: 520 atccaggccatcgccgtgctcttcgacg 547
||||||||||| ||||| ||||||||||
Sbjct: 2503728 atccaggccattgccgtcctcttcgacg 2503755
Score = 54.0 bits (27), Expect = 2e-004
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 240 ccgtaagctctacccttactgccccggcaagccgatggagtgccccg 286
||||||||||||||| |||||| ||| |||| ||||||||||||||
Sbjct: 2503232 ccgtaagctctacccctactgctccgccaagatgatggagtgccccg 2503278
Score = 46.1 bits (23), Expect = 0.048
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 871 gacgtgcacggcgtggtcggcca 893
|||||||||||||||||||||||
Sbjct: 19162218 gacgtgcacggcgtggtcggcca 19162240
>gb|AACV01012675.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg012675, whole
genome shotgun sequence
Length = 13884
Score = 129 bits (65), Expect = 4e-027
Identities = 176/213 (82%)
Strand = Plus / Minus
Query: 688 ctgtccgtcacccgcaccagcgcggccaacggcgtgctcgtctcgctcgacggcaggttc 747
|||||||| || || |||| |||||||||||||| ||||| |||||||||| ||||
Sbjct: 2133 ctgtccgtgacgcggaccaaggcggccaacggcgtcctcgtggagctcgacggcgtgttc 2074
Query: 748 accatcagggccaacgccgtgcccatcacagaggaggagtccagggtgcaccggtacggc 807
| |||| ||| |||| ||||||||||| ||||||| || ||| | ||| |||||||
Sbjct: 2073 aagatcacggcgaacgtggtgcccatcaccaaggaggactcgaggatccacaggtacggg 2014
Query: 808 gtcacggccgacgactgcctcgcgcaccttgacctggccttcaagttcggcgcgctcacc 867
||||| | ||||||||||||||| ||||| |||||||| ||||||||| ||| ||||||
Sbjct: 2013 gtcaccgacgacgactgcctcgcccacctcgacctggcgttcaagttctacgccctcacc 1954
Query: 868 gccgacgtgcacggcgtggtcggccagacgtac 900
| |||||| ||||||||| | ||||||||||||
Sbjct: 1953 gacgacgtccacggcgtgctgggccagacgtac 1921
Score = 121 bits (61), Expect = 1e-024
Identities = 106/121 (87%)
Strand = Plus / Minus
Query: 367 gacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgccgggacgcc 426
|||||||| ||||||||||||||||||||| | |||||||||||||||||||| ||| |
Sbjct: 2448 gacccgcggttcatcggcggcgacggcaacacgttctacttccacggccgccgagaccgc 2389
Query: 427 gacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcggcaagcac 486
||||||||| ||||||||||| |||| |||||||||| |||||||||||||| |||
Sbjct: 2388 gacttctgcctgctctccgacgcaaacctgcacatcaacggccacttcatcggcaaccac 2329
Query: 487 g 487
|
Sbjct: 2328 g 2328
Score = 46.1 bits (23), Expect = 0.048
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 556 ctctacgtcggcgccaggaagacggccgcgtgggacgacgacgtcgaccgc 606
|||||||||||||| | | |||||||| ||||||||||||| |||||||
Sbjct: 2259 ctctacgtcggcgcgcgcaggacggccgtgtgggacgacgactccgaccgc 2209
Score = 44.1 bits (22), Expect = 0.19
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 985 ttcgccgctgactgcgccgtggcgcg 1010
|||||||||||||||||||| |||||
Sbjct: 1836 ttcgccgctgactgcgccgtcgcgcg 1811
>gb|CH401206.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000043 genomic
scaffold, whole genome shotgun sequence
Length = 11965857
Score = 129 bits (65), Expect = 4e-027
Identities = 176/213 (82%)
Strand = Plus / Plus
Query: 688 ctgtccgtcacccgcaccagcgcggccaacggcgtgctcgtctcgctcgacggcaggttc 747
|||||||| || || |||| |||||||||||||| ||||| |||||||||| ||||
Sbjct: 9685618 ctgtccgtgacgcggaccaaggcggccaacggcgtcctcgtggagctcgacggcgtgttc 9685677
Query: 748 accatcagggccaacgccgtgcccatcacagaggaggagtccagggtgcaccggtacggc 807
| |||| ||| |||| ||||||||||| ||||||| || ||| | ||| |||||||
Sbjct: 9685678 aagatcacggcgaacgtggtgcccatcaccaaggaggactcgaggatccacaggtacggg 9685737
Query: 808 gtcacggccgacgactgcctcgcgcaccttgacctggccttcaagttcggcgcgctcacc 867
||||| | ||||||||||||||| ||||| |||||||| ||||||||| ||| ||||||
Sbjct: 9685738 gtcaccgacgacgactgcctcgcccacctcgacctggcgttcaagttctacgccctcacc 9685797
Query: 868 gccgacgtgcacggcgtggtcggccagacgtac 900
| |||||| ||||||||| | ||||||||||||
Sbjct: 9685798 gacgacgtccacggcgtgctgggccagacgtac 9685830
Score = 121 bits (61), Expect = 1e-024
Identities = 106/121 (87%)
Strand = Plus / Plus
Query: 367 gacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgccgggacgcc 426
|||||||| ||||||||||||||||||||| | |||||||||||||||||||| ||| |
Sbjct: 9685303 gacccgcggttcatcggcggcgacggcaacacgttctacttccacggccgccgagaccgc 9685362
Query: 427 gacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcggcaagcac 486
||||||||| ||||||||||| |||| |||||||||| |||||||||||||| |||
Sbjct: 9685363 gacttctgcctgctctccgacgcaaacctgcacatcaacggccacttcatcggcaaccac 9685422
Query: 487 g 487
|
Sbjct: 9685423 g 9685423
Score = 115 bits (58), Expect = 6e-023
Identities = 108/122 (88%), Gaps = 2/122 (1%)
Strand = Plus / Plus
Query: 367 gacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgccgggacgcc 426
|||||||| ||||||||||||||||||||| | |||||||||||||||||||| ||| |
Sbjct: 9690074 gacccgcggttcatcggcggcgacggcaacacgttctacttccacggccgccgtgaccgc 9690133
Query: 427 gacttctgcgtgctctccgaccgcg-acctccacatcaacgcgcacttcatcggcaagca 485
||||||||| |||||||||| |||| |||| |||||||||| |||||| ||||||| ||
Sbjct: 9690134 gacttctgcctgctctccga-cgcgaacctgcacatcaacggccacttcgtcggcaacca 9690192
Query: 486 cg 487
||
Sbjct: 9690193 cg 9690194
Score = 113 bits (57), Expect = 2e-022
Identities = 174/213 (81%)
Strand = Plus / Plus
Query: 688 ctgtccgtcacccgcaccagcgcggccaacggcgtgctcgtctcgctcgacggcaggttc 747
|||||||| || || |||| |||||||||||||| |||||| |||||||||| ||||
Sbjct: 9690389 ctgtccgtgacgcggaccaaggcggccaacggcgtcctcgtcgagctcgacggcgtgttc 9690448
Query: 748 accatcagggccaacgccgtgcccatcacagaggaggagtccagggtgcaccggtacggc 807
| |||| || |||| ||||||||||| ||||||| || ||| | ||| |||||||
Sbjct: 9690449 aagatcaccgcgaacgtggtgcccatcaccaaggaggactcgaggatccacaggtacggg 9690508
Query: 808 gtcacggccgacgactgcctcgcgcaccttgacctggccttcaagttcggcgcgctcacc 867
||||| | ||| ||||||||||| ||||| |||||||| ||||||||| ||| ||||||
Sbjct: 9690509 gtcaccgacgatgactgcctcgcccacctcgacctggcgttcaagttctacgccctcacc 9690568
Query: 868 gccgacgtgcacggcgtggtcggccagacgtac 900
| |||||| || |||||| | ||||||||||||
Sbjct: 9690569 gacgacgtccatggcgtgctgggccagacgtac 9690601
Score = 50.1 bits (25), Expect = 0.003
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 186 gcacaaggagaaggagaaggagaag 210
|||||||||||||||||||||||||
Sbjct: 4807901 gcacaaggagaaggagaaggagaag 4807925
Score = 46.1 bits (23), Expect = 0.048
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 556 ctctacgtcggcgccaggaagacggccgcgtgggacgacgacgtcgaccgc 606
|||||||||||||| | | |||||||| ||||||||||||| |||||||
Sbjct: 9690263 ctctacgtcggcgcgcgcaggacggccgtgtgggacgacgactccgaccgc 9690313
Score = 46.1 bits (23), Expect = 0.048
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 556 ctctacgtcggcgccaggaagacggccgcgtgggacgacgacgtcgaccgc 606
|||||||||||||| | | |||||||| ||||||||||||| |||||||
Sbjct: 9685492 ctctacgtcggcgcgcgcaggacggccgtgtgggacgacgactccgaccgc 9685542
Score = 44.1 bits (22), Expect = 0.19
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 985 ttcgccgctgactgcgccgtggcgcg 1010
|||||||||||||||||||| |||||
Sbjct: 9685915 ttcgccgctgactgcgccgtcgcgcg 9685940
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 129 bits (65), Expect = 4e-027
Identities = 176/213 (82%)
Strand = Plus / Plus
Query: 688 ctgtccgtcacccgcaccagcgcggccaacggcgtgctcgtctcgctcgacggcaggttc 747
|||||||| || || |||| |||||||||||||| ||||| |||||||||| ||||
Sbjct: 26985931 ctgtccgtgacgcggaccaaggcggccaacggcgtcctcgtggagctcgacggcgtgttc 26985990
Query: 748 accatcagggccaacgccgtgcccatcacagaggaggagtccagggtgcaccggtacggc 807
| |||| ||| |||| ||||||||||| ||||||| || ||| | ||| |||||||
Sbjct: 26985991 aagatcacggcgaacgtggtgcccatcaccaaggaggactcgaggatccacaggtacggg 26986050
Query: 808 gtcacggccgacgactgcctcgcgcaccttgacctggccttcaagttcggcgcgctcacc 867
||||| | ||||||||||||||| ||||| |||||||| ||||||||| ||| ||||||
Sbjct: 26986051 gtcaccgacgacgactgcctcgcccacctcgacctggcgttcaagttctacgccctcacc 26986110
Query: 868 gccgacgtgcacggcgtggtcggccagacgtac 900
| |||||| ||||||||| | ||||||||||||
Sbjct: 26986111 gacgacgtccacggcgtgctgggccagacgtac 26986143
Score = 121 bits (61), Expect = 1e-024
Identities = 106/121 (87%)
Strand = Plus / Plus
Query: 367 gacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgccgggacgcc 426
|||||||| ||||||||||||||||||||| | |||||||||||||||||||| ||| |
Sbjct: 26985616 gacccgcggttcatcggcggcgacggcaacacgttctacttccacggccgccgagaccgc 26985675
Query: 427 gacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcggcaagcac 486
||||||||| ||||||||||| |||| |||||||||| |||||||||||||| |||
Sbjct: 26985676 gacttctgcctgctctccgacgcaaacctgcacatcaacggccacttcatcggcaaccac 26985735
Query: 487 g 487
|
Sbjct: 26985736 g 26985736
Score = 115 bits (58), Expect = 6e-023
Identities = 108/122 (88%), Gaps = 2/122 (1%)
Strand = Plus / Plus
Query: 367 gacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgccgggacgcc 426
|||||||| ||||||||||||||||||||| | |||||||||||||||||||| ||| |
Sbjct: 26990387 gacccgcggttcatcggcggcgacggcaacacgttctacttccacggccgccgtgaccgc 26990446
Query: 427 gacttctgcgtgctctccgaccgcg-acctccacatcaacgcgcacttcatcggcaagca 485
||||||||| |||||||||| |||| |||| |||||||||| |||||| ||||||| ||
Sbjct: 26990447 gacttctgcctgctctccga-cgcgaacctgcacatcaacggccacttcgtcggcaacca 26990505
Query: 486 cg 487
||
Sbjct: 26990506 cg 26990507
Score = 115 bits (58), Expect = 6e-023
Identities = 153/184 (83%), Gaps = 3/184 (1%)
Strand = Plus / Plus
Query: 361 tgcggcgacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgccgg 420
||||||||||| ||||||| |||||||||||||||| |||||||||||||||| |
Sbjct: 369127 tgcggcgacccccgcttcaccggcggcgacggcaacaacttctacttccacggcaagaag 369186
Query: 421 gacgccgacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcggc 480
||| |||||||||| | ||||||||| || ||||||| ||||||| ||||||||||||
Sbjct: 369187 gaccgcgacttctgcctcctctccgacgccgccctccacgtcaacgcccacttcatcggc 369246
Query: 481 aagcacggcgccgacggcatgtcccgggacttcacgtggatccaggccatcgccgtgctc 540
|||| || || || ||||||||| |||||||| ||||||||||| ||| ||| |||
Sbjct: 369247 aagc---gcaacgccgccatgtcccgcgacttcacctggatccaggcgctcggcgtcctc 369303
Query: 541 ttcg 544
||||
Sbjct: 369304 ttcg 369307
Score = 113 bits (57), Expect = 2e-022
Identities = 174/213 (81%)
Strand = Plus / Plus
Query: 688 ctgtccgtcacccgcaccagcgcggccaacggcgtgctcgtctcgctcgacggcaggttc 747
|||||||| || || |||| |||||||||||||| |||||| |||||||||| ||||
Sbjct: 26990702 ctgtccgtgacgcggaccaaggcggccaacggcgtcctcgtcgagctcgacggcgtgttc 26990761
Query: 748 accatcagggccaacgccgtgcccatcacagaggaggagtccagggtgcaccggtacggc 807
| |||| || |||| ||||||||||| ||||||| || ||| | ||| |||||||
Sbjct: 26990762 aagatcaccgcgaacgtggtgcccatcaccaaggaggactcgaggatccacaggtacggg 26990821
Query: 808 gtcacggccgacgactgcctcgcgcaccttgacctggccttcaagttcggcgcgctcacc 867
||||| | ||| ||||||||||| ||||| |||||||| ||||||||| ||| ||||||
Sbjct: 26990822 gtcaccgacgatgactgcctcgcccacctcgacctggcgttcaagttctacgccctcacc 26990881
Query: 868 gccgacgtgcacggcgtggtcggccagacgtac 900
| |||||| || |||||| | ||||||||||||
Sbjct: 26990882 gacgacgtccatggcgtgctgggccagacgtac 26990914
Score = 113 bits (57), Expect = 2e-022
Identities = 102/117 (87%)
Strand = Plus / Plus
Query: 802 tacggcgtcacggccgacgactgcctcgcgcaccttgacctggccttcaagttcggcgcg 861
||||||||| | | |||||||||||||| ||||| ||||| | ||||||||||| |||
Sbjct: 369571 tacggcgtcgccgacgacgactgcctcgtccacctcgacctcggcttcaagttcgaggcg 369630
Query: 862 ctcaccgccgacgtgcacggcgtggtcggccagacgtaccgctccgactacgtcaac 918
||||||| |||||| || |||||| |||||||||| |||||||||||||||||||||
Sbjct: 369631 ctcaccgacgacgtccatggcgtgctcggccagacctaccgctccgactacgtcaac 369687
Score = 50.1 bits (25), Expect = 0.003
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 186 gcacaaggagaaggagaaggagaag 210
|||||||||||||||||||||||||
Sbjct: 22108214 gcacaaggagaaggagaaggagaag 22108238
Score = 46.1 bits (23), Expect = 0.048
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 556 ctctacgtcggcgccaggaagacggccgcgtgggacgacgacgtcgaccgc 606
|||||||||||||| | | |||||||| ||||||||||||| |||||||
Sbjct: 26990576 ctctacgtcggcgcgcgcaggacggccgtgtgggacgacgactccgaccgc 26990626
Score = 46.1 bits (23), Expect = 0.048
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 556 ctctacgtcggcgccaggaagacggccgcgtgggacgacgacgtcgaccgc 606
|||||||||||||| | | |||||||| ||||||||||||| |||||||
Sbjct: 26985805 ctctacgtcggcgcgcgcaggacggccgtgtgggacgacgactccgaccgc 26985855
Score = 44.1 bits (22), Expect = 0.19
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 985 ttcgccgctgactgcgccgtggcgcg 1010
|||||||||||||||||||| |||||
Sbjct: 26986228 ttcgccgctgactgcgccgtcgcgcg 26986253
Score = 44.1 bits (22), Expect = 0.19
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaagc 211
||||||||||||||||||||||
Sbjct: 560094 aaggagaaggagaaggagaagc 560115
>dbj|AK122054.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033114J03, full
insert sequence
Length = 1352
Score = 115 bits (58), Expect = 6e-023
Identities = 109/126 (86%)
Strand = Plus / Plus
Query: 359 cgtgcggcgacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgcc 418
|||||||||||||||| |||| |||||||||||||||| ||||||||||||||||
Sbjct: 450 cgtgcggcgacccgcggttcaccggcggcgacggcaacaacttctacttccacggcaaga 509
Query: 419 gggacgccgacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcg 478
|||| |||||||||| | |||||||| |||||||||||||||||| ||||||||||
Sbjct: 510 aggaccacgacttctgcatcgtctccgacgccgacctccacatcaacgcccacttcatcg 569
Query: 479 gcaagc 484
||||||
Sbjct: 570 gcaagc 575
Score = 77.8 bits (39), Expect = 1e-011
Identities = 81/95 (85%)
Strand = Plus / Plus
Query: 824 gcctcgcgcaccttgacctggccttcaagttcggcgcgctcaccgccgacgtgcacggcg 883
||||||| ||||| ||||| | |||||||||| || ||| ||| |||||| || ||||
Sbjct: 910 gcctcgctcacctcgacctcggcttcaagttctacgacctctccgacgacgtccatggcg 969
Query: 884 tggtcggccagacgtaccgctccgactacgtcaac 918
|| |||||||||| |||||||||||||||||||||
Sbjct: 970 tgctcggccagacctaccgctccgactacgtcaac 1004
>gb|AC129717.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0079H23,
complete sequence
Length = 191765
Score = 115 bits (58), Expect = 6e-023
Identities = 108/122 (88%), Gaps = 2/122 (1%)
Strand = Plus / Plus
Query: 367 gacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgccgggacgcc 426
|||||||| ||||||||||||||||||||| | |||||||||||||||||||| ||| |
Sbjct: 137811 gacccgcggttcatcggcggcgacggcaacacgttctacttccacggccgccgtgaccgc 137870
Query: 427 gacttctgcgtgctctccgaccgcg-acctccacatcaacgcgcacttcatcggcaagca 485
||||||||| |||||||||| |||| |||| |||||||||| |||||| ||||||| ||
Sbjct: 137871 gacttctgcctgctctccga-cgcgaacctgcacatcaacggccacttcgtcggcaacca 137929
Query: 486 cg 487
||
Sbjct: 137930 cg 137931
Score = 113 bits (57), Expect = 2e-022
Identities = 174/213 (81%)
Strand = Plus / Plus
Query: 688 ctgtccgtcacccgcaccagcgcggccaacggcgtgctcgtctcgctcgacggcaggttc 747
|||||||| || || |||| |||||||||||||| |||||| |||||||||| ||||
Sbjct: 138126 ctgtccgtgacgcggaccaaggcggccaacggcgtcctcgtcgagctcgacggcgtgttc 138185
Query: 748 accatcagggccaacgccgtgcccatcacagaggaggagtccagggtgcaccggtacggc 807
| |||| || |||| ||||||||||| ||||||| || ||| | ||| |||||||
Sbjct: 138186 aagatcaccgcgaacgtggtgcccatcaccaaggaggactcgaggatccacaggtacggg 138245
Query: 808 gtcacggccgacgactgcctcgcgcaccttgacctggccttcaagttcggcgcgctcacc 867
||||| | ||| ||||||||||| ||||| |||||||| ||||||||| ||| ||||||
Sbjct: 138246 gtcaccgacgatgactgcctcgcccacctcgacctggcgttcaagttctacgccctcacc 138305
Query: 868 gccgacgtgcacggcgtggtcggccagacgtac 900
| |||||| || |||||| | ||||||||||||
Sbjct: 138306 gacgacgtccatggcgtgctgggccagacgtac 138338
Score = 46.1 bits (23), Expect = 0.048
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 556 ctctacgtcggcgccaggaagacggccgcgtgggacgacgacgtcgaccgc 606
|||||||||||||| | | |||||||| ||||||||||||| |||||||
Sbjct: 138000 ctctacgtcggcgcgcgcaggacggccgtgtgggacgacgactccgaccgc 138050
>gb|AC129716.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone
OSJNBa0068N01, complete sequence
Length = 152233
Score = 115 bits (58), Expect = 6e-023
Identities = 153/184 (83%), Gaps = 3/184 (1%)
Strand = Plus / Plus
Query: 361 tgcggcgacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgccgg 420
||||||||||| ||||||| |||||||||||||||| |||||||||||||||| |
Sbjct: 40037 tgcggcgacccccgcttcaccggcggcgacggcaacaacttctacttccacggcaagaag 40096
Query: 421 gacgccgacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcggc 480
||| |||||||||| | ||||||||| || ||||||| ||||||| ||||||||||||
Sbjct: 40097 gaccgcgacttctgcctcctctccgacgccgccctccacgtcaacgcccacttcatcggc 40156
Query: 481 aagcacggcgccgacggcatgtcccgggacttcacgtggatccaggccatcgccgtgctc 540
|||| || || || ||||||||| |||||||| ||||||||||| ||| ||| |||
Sbjct: 40157 aagc---gcaacgccgccatgtcccgcgacttcacctggatccaggcgctcggcgtcctc 40213
Query: 541 ttcg 544
||||
Sbjct: 40214 ttcg 40217
Score = 113 bits (57), Expect = 2e-022
Identities = 102/117 (87%)
Strand = Plus / Plus
Query: 802 tacggcgtcacggccgacgactgcctcgcgcaccttgacctggccttcaagttcggcgcg 861
||||||||| | | |||||||||||||| ||||| ||||| | ||||||||||| |||
Sbjct: 40481 tacggcgtcgccgacgacgactgcctcgtccacctcgacctcggcttcaagttcgaggcg 40540
Query: 862 ctcaccgccgacgtgcacggcgtggtcggccagacgtaccgctccgactacgtcaac 918
||||||| |||||| || |||||| |||||||||| |||||||||||||||||||||
Sbjct: 40541 ctcaccgacgacgtccatggcgtgctcggccagacctaccgctccgactacgtcaac 40597
>gb|AACV01003099.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg003099, whole
genome shotgun sequence
Length = 28804
Score = 115 bits (58), Expect = 6e-023
Identities = 109/126 (86%)
Strand = Plus / Minus
Query: 359 cgtgcggcgacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgcc 418
|||||||||||||||| |||| |||||||||||||||| ||||||||||||||||
Sbjct: 15689 cgtgcggcgacccgcggttcaccggcggcgacggcaacaacttctacttccacggcaaga 15630
Query: 419 gggacgccgacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcg 478
|||| |||||||||| | |||||||| |||||||||||||||||| ||||||||||
Sbjct: 15629 aggaccacgacttctgcatcgtctccgacgccgacctccacatcaacgcccacttcatcg 15570
Query: 479 gcaagc 484
||||||
Sbjct: 15569 gcaagc 15564
Score = 107 bits (54), Expect = 2e-020
Identities = 108/126 (85%)
Strand = Plus / Plus
Query: 359 cgtgcggcgacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgcc 418
|||||||||||||||| |||| |||||||||||||||| ||||||||| ||||||
Sbjct: 21889 cgtgcggcgacccgcggttcaccggcggcgacggcaacaacttctactttcacggcaaga 21948
Query: 419 gggacgccgacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcg 478
|||| |||||||||| | |||||||| |||||||||||||||||| ||||||||||
Sbjct: 21949 aggaccacgacttctgcatcgtctccgacgccgacctccacatcaacgcccacttcatcg 22008
Query: 479 gcaagc 484
||||||
Sbjct: 22009 gcaagc 22014
Score = 107 bits (54), Expect = 2e-020
Identities = 108/126 (85%)
Strand = Plus / Plus
Query: 359 cgtgcggcgacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgcc 418
||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||
Sbjct: 17787 cgtgcggcgaccctcgcttcaccggcggcgacggcaacaacttctacttccacggcaaga 17846
Query: 419 gggacgccgacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcg 478
|||| |||||||||| | |||||||| |||||| ||||||||||| ||||||||||
Sbjct: 17847 aggaccacgacttctgcatcgtctccgacgccgacctgcacatcaacgcccacttcatcg 17906
Query: 479 gcaagc 484
||||||
Sbjct: 17907 gcaagc 17912
Score = 79.8 bits (40), Expect = 3e-012
Identities = 103/124 (83%)
Strand = Plus / Minus
Query: 359 cgtgcggcgacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgcc 418
||||||||||||| || |||| ||||| |||||||||| |||||||||||||||||
Sbjct: 11538 cgtgcggcgacccacggttcaccggcgccgacggcaacaccttctacttccacggcaaga 11479
Query: 419 gggacgccgacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcg 478
||| ||||||||| | |||||||| |||||| ||||||||||| ||||||||||
Sbjct: 11478 aggagcaggacttctgcatcgtctccgacgccgacctgcacatcaacgcccacttcatcg 11419
Query: 479 gcaa 482
||||
Sbjct: 11418 gcaa 11415
Score = 77.8 bits (39), Expect = 1e-011
Identities = 81/95 (85%)
Strand = Plus / Plus
Query: 824 gcctcgcgcaccttgacctggccttcaagttcggcgcgctcaccgccgacgtgcacggcg 883
||||||| ||||| ||| | | |||||||||| || ||| ||| |||||| |||||||
Sbjct: 18249 gcctcgctcacctcgacatcggcttcaagttctacgacctctccgacgacgtccacggcg 18308
Query: 884 tggtcggccagacgtaccgctccgactacgtcaac 918
|| |||||||||| |||||||||||||||||||||
Sbjct: 18309 tgctcggccagacctaccgctccgactacgtcaac 18343
Score = 77.8 bits (39), Expect = 1e-011
Identities = 81/95 (85%)
Strand = Plus / Minus
Query: 824 gcctcgcgcaccttgacctggccttcaagttcggcgcgctcaccgccgacgtgcacggcg 883
||||||| ||||| ||||| | |||||||||| || ||| ||| |||||| || ||||
Sbjct: 15227 gcctcgctcacctcgacctcggcttcaagttctacgacctctccgacgacgtccatggcg 15168
Query: 884 tggtcggccagacgtaccgctccgactacgtcaac 918
|| |||||||||| |||||||||||||||||||||
Sbjct: 15167 tgctcggccagacctaccgctccgactacgtcaac 15133
Score = 65.9 bits (33), Expect = 5e-008
Identities = 96/117 (82%)
Strand = Plus / Plus
Query: 802 tacggcgtcacggccgacgactgcctcgcgcaccttgacctggccttcaagttcggcgcg 861
||||||||||| | || ||| ||||||| ||||| ||||| | |||||||||| ||
Sbjct: 22329 tacggcgtcaccgaggaggacagcctcgcccacctcgacctcggcttcaagttctacgac 22388
Query: 862 ctcaccgccgacgtgcacggcgtggtcggccagacgtaccgctccgactacgtcaac 918
||| ||| ||| || || ||||| |||||||||| |||||||||||||||||||||
Sbjct: 22389 ctctccgacgatgtccatggcgtcctcggccagacctaccgctccgactacgtcaac 22445
>gb|AACV01010747.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg010747, whole
genome shotgun sequence
Length = 81998
Score = 115 bits (58), Expect = 6e-023
Identities = 153/184 (83%), Gaps = 3/184 (1%)
Strand = Plus / Plus
Query: 361 tgcggcgacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgccgg 420
||||||||||| ||||||| |||||||||||||||| |||||||||||||||| |
Sbjct: 3092 tgcggcgacccccgcttcaccggcggcgacggcaacaacttctacttccacggcaagaag 3151
Query: 421 gacgccgacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcggc 480
||| |||||||||| | ||||||||| || ||||||| ||||||| ||||||||||||
Sbjct: 3152 gaccgcgacttctgcctcctctccgacgccgccctccacgtcaacgcccacttcatcggc 3211
Query: 481 aagcacggcgccgacggcatgtcccgggacttcacgtggatccaggccatcgccgtgctc 540
|||| || || || ||||||||| |||||||| ||||||||||| ||| ||| |||
Sbjct: 3212 aagc---gcaacgccgccatgtcccgcgacttcacctggatccaggcgctcggcgtcctc 3268
Query: 541 ttcg 544
||||
Sbjct: 3269 ttcg 3272
Score = 113 bits (57), Expect = 2e-022
Identities = 102/117 (87%)
Strand = Plus / Plus
Query: 802 tacggcgtcacggccgacgactgcctcgcgcaccttgacctggccttcaagttcggcgcg 861
||||||||| | | |||||||||||||| ||||| ||||| | ||||||||||| |||
Sbjct: 3536 tacggcgtcgccgacgacgactgcctcgtccacctcgacctcggcttcaagttcgaggcg 3595
Query: 862 ctcaccgccgacgtgcacggcgtggtcggccagacgtaccgctccgactacgtcaac 918
||||||| |||||| || |||||| |||||||||| |||||||||||||||||||||
Sbjct: 3596 ctcaccgacgacgtccatggcgtgctcggccagacctaccgctccgactacgtcaac 3652
>gb|AACV01012676.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg012676, whole
genome shotgun sequence
Length = 33360
Score = 115 bits (58), Expect = 6e-023
Identities = 108/122 (88%), Gaps = 2/122 (1%)
Strand = Plus / Minus
Query: 367 gacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgccgggacgcc 426
|||||||| ||||||||||||||||||||| | |||||||||||||||||||| ||| |
Sbjct: 31137 gacccgcggttcatcggcggcgacggcaacacgttctacttccacggccgccgtgaccgc 31078
Query: 427 gacttctgcgtgctctccgaccgcg-acctccacatcaacgcgcacttcatcggcaagca 485
||||||||| |||||||||| |||| |||| |||||||||| |||||| ||||||| ||
Sbjct: 31077 gacttctgcctgctctccga-cgcgaacctgcacatcaacggccacttcgtcggcaacca 31019
Query: 486 cg 487
||
Sbjct: 31018 cg 31017
Score = 113 bits (57), Expect = 2e-022
Identities = 174/213 (81%)
Strand = Plus / Minus
Query: 688 ctgtccgtcacccgcaccagcgcggccaacggcgtgctcgtctcgctcgacggcaggttc 747
|||||||| || || |||| |||||||||||||| |||||| |||||||||| ||||
Sbjct: 30822 ctgtccgtgacgcggaccaaggcggccaacggcgtcctcgtcgagctcgacggcgtgttc 30763
Query: 748 accatcagggccaacgccgtgcccatcacagaggaggagtccagggtgcaccggtacggc 807
| |||| || |||| ||||||||||| ||||||| || ||| | ||| |||||||
Sbjct: 30762 aagatcaccgcgaacgtggtgcccatcaccaaggaggactcgaggatccacaggtacggg 30703
Query: 808 gtcacggccgacgactgcctcgcgcaccttgacctggccttcaagttcggcgcgctcacc 867
||||| | ||| ||||||||||| ||||| |||||||| ||||||||| ||| ||||||
Sbjct: 30702 gtcaccgacgatgactgcctcgcccacctcgacctggcgttcaagttctacgccctcacc 30643
Query: 868 gccgacgtgcacggcgtggtcggccagacgtac 900
| |||||| || |||||| | ||||||||||||
Sbjct: 30642 gacgacgtccatggcgtgctgggccagacgtac 30610
Score = 46.1 bits (23), Expect = 0.048
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 556 ctctacgtcggcgccaggaagacggccgcgtgggacgacgacgtcgaccgc 606
|||||||||||||| | | |||||||| ||||||||||||| |||||||
Sbjct: 30948 ctctacgtcggcgcgcgcaggacggccgtgtgggacgacgactccgaccgc 30898
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 115 bits (58), Expect = 6e-023
Identities = 109/126 (86%)
Strand = Plus / Plus
Query: 359 cgtgcggcgacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgcc 418
|||||||||||||||| |||| |||||||||||||||| ||||||||||||||||
Sbjct: 42780105 cgtgcggcgacccgcggttcaccggcggcgacggcaacaacttctacttccacggcaaga 42780164
Query: 419 gggacgccgacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcg 478
|||| |||||||||| | |||||||| |||||||||||||||||| ||||||||||
Sbjct: 42780165 aggaccacgacttctgcatcgtctccgacgccgacctccacatcaacgcccacttcatcg 42780224
Query: 479 gcaagc 484
||||||
Sbjct: 42780225 gcaagc 42780230
Score = 107 bits (54), Expect = 2e-020
Identities = 108/126 (85%)
Strand = Plus / Minus
Query: 359 cgtgcggcgacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgcc 418
||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||
Sbjct: 42778007 cgtgcggcgaccctcgcttcaccggcggcgacggcaacaacttctacttccacggcaaga 42777948
Query: 419 gggacgccgacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcg 478
|||| |||||||||| | |||||||| |||||| ||||||||||| ||||||||||
Sbjct: 42777947 aggaccacgacttctgcatcgtctccgacgccgacctgcacatcaacgcccacttcatcg 42777888
Query: 479 gcaagc 484
||||||
Sbjct: 42777887 gcaagc 42777882
Score = 107 bits (54), Expect = 2e-020
Identities = 108/126 (85%)
Strand = Plus / Minus
Query: 359 cgtgcggcgacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgcc 418
|||||||||||||||| |||| |||||||||||||||| ||||||||| ||||||
Sbjct: 42773906 cgtgcggcgacccgcggttcaccggcggcgacggcaacaacttctactttcacggcaaga 42773847
Query: 419 gggacgccgacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcg 478
|||| |||||||||| | |||||||| |||||||||||||||||| ||||||||||
Sbjct: 42773846 aggaccacgacttctgcatcgtctccgacgccgacctccacatcaacgcccacttcatcg 42773787
Query: 479 gcaagc 484
||||||
Sbjct: 42773786 gcaagc 42773781
Score = 79.8 bits (40), Expect = 3e-012
Identities = 103/124 (83%)
Strand = Plus / Plus
Query: 359 cgtgcggcgacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgcc 418
||||||||||||| || |||| ||||| |||||||||| |||||||||||||||||
Sbjct: 42784257 cgtgcggcgacccacggttcaccggcgccgacggcaacaccttctacttccacggcaaga 42784316
Query: 419 gggacgccgacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcg 478
||| ||||||||| | |||||||| |||||| ||||||||||| ||||||||||
Sbjct: 42784317 aggagcaggacttctgcatcgtctccgacgccgacctgcacatcaacgcccacttcatcg 42784376
Query: 479 gcaa 482
||||
Sbjct: 42784377 gcaa 42784380
Score = 77.8 bits (39), Expect = 1e-011
Identities = 81/95 (85%)
Strand = Plus / Plus
Query: 824 gcctcgcgcaccttgacctggccttcaagttcggcgcgctcaccgccgacgtgcacggcg 883
||||||| ||||| ||||| | |||||||||| || ||| ||| |||||| || ||||
Sbjct: 42780567 gcctcgctcacctcgacctcggcttcaagttctacgacctctccgacgacgtccatggcg 42780626
Query: 884 tggtcggccagacgtaccgctccgactacgtcaac 918
|| |||||||||| |||||||||||||||||||||
Sbjct: 42780627 tgctcggccagacctaccgctccgactacgtcaac 42780661
Score = 77.8 bits (39), Expect = 1e-011
Identities = 81/95 (85%)
Strand = Plus / Minus
Query: 824 gcctcgcgcaccttgacctggccttcaagttcggcgcgctcaccgccgacgtgcacggcg 883
||||||| ||||| ||| | | |||||||||| || ||| ||| |||||| |||||||
Sbjct: 42777545 gcctcgctcacctcgacatcggcttcaagttctacgacctctccgacgacgtccacggcg 42777486
Query: 884 tggtcggccagacgtaccgctccgactacgtcaac 918
|| |||||||||| |||||||||||||||||||||
Sbjct: 42777485 tgctcggccagacctaccgctccgactacgtcaac 42777451
Score = 65.9 bits (33), Expect = 5e-008
Identities = 96/117 (82%)
Strand = Plus / Minus
Query: 802 tacggcgtcacggccgacgactgcctcgcgcaccttgacctggccttcaagttcggcgcg 861
||||||||||| | || ||| ||||||| ||||| ||||| | |||||||||| ||
Sbjct: 42773466 tacggcgtcaccgaggaggacagcctcgcccacctcgacctcggcttcaagttctacgac 42773407
Query: 862 ctcaccgccgacgtgcacggcgtggtcggccagacgtaccgctccgactacgtcaac 918
||| ||| ||| || || ||||| |||||||||| |||||||||||||||||||||
Sbjct: 42773406 ctctccgacgatgtccatggcgtcctcggccagacctaccgctccgactacgtcaac 42773350
Score = 44.1 bits (22), Expect = 0.19
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 192 ggagaaggagaaggagaagccc 213
||||||||||||||||||||||
Sbjct: 40574420 ggagaaggagaaggagaagccc 40574441
>ref|NM_189426.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 993
Score = 115 bits (58), Expect = 6e-023
Identities = 109/126 (86%)
Strand = Plus / Plus
Query: 359 cgtgcggcgacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgcc 418
|||||||||||||||| |||| |||||||||||||||| ||||||||||||||||
Sbjct: 296 cgtgcggcgacccgcggttcaccggcggcgacggcaacaacttctacttccacggcaaga 355
Query: 419 gggacgccgacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcg 478
|||| |||||||||| | |||||||| |||||||||||||||||| ||||||||||
Sbjct: 356 aggaccacgacttctgcatcgtctccgacgccgacctccacatcaacgcccacttcatcg 415
Query: 479 gcaagc 484
||||||
Sbjct: 416 gcaagc 421
Score = 77.8 bits (39), Expect = 1e-011
Identities = 81/95 (85%)
Strand = Plus / Plus
Query: 824 gcctcgcgcaccttgacctggccttcaagttcggcgcgctcaccgccgacgtgcacggcg 883
||||||| ||||| ||||| | |||||||||| || ||| ||| |||||| || ||||
Sbjct: 758 gcctcgctcacctcgacctcggcttcaagttctacgacctctccgacgacgtccatggcg 817
Query: 884 tggtcggccagacgtaccgctccgactacgtcaac 918
|| |||||||||| |||||||||||||||||||||
Sbjct: 818 tgctcggccagacctaccgctccgactacgtcaac 852
>ref|NT_079923.2| Oryza sativa (japonica cultivar-group)
Length = 2970704
Score = 115 bits (58), Expect = 6e-023
Identities = 109/126 (86%)
Strand = Plus / Plus
Query: 359 cgtgcggcgacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgcc 418
|||||||||||||||| |||| |||||||||||||||| ||||||||||||||||
Sbjct: 2408399 cgtgcggcgacccgcggttcaccggcggcgacggcaacaacttctacttccacggcaaga 2408458
Query: 419 gggacgccgacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcg 478
|||| |||||||||| | |||||||| |||||||||||||||||| ||||||||||
Sbjct: 2408459 aggaccacgacttctgcatcgtctccgacgccgacctccacatcaacgcccacttcatcg 2408518
Query: 479 gcaagc 484
||||||
Sbjct: 2408519 gcaagc 2408524
Score = 107 bits (54), Expect = 2e-020
Identities = 108/126 (85%)
Strand = Plus / Minus
Query: 359 cgtgcggcgacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgcc 418
||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||
Sbjct: 2406301 cgtgcggcgaccctcgcttcaccggcggcgacggcaacaacttctacttccacggcaaga 2406242
Query: 419 gggacgccgacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcg 478
|||| |||||||||| | |||||||| |||||| ||||||||||| ||||||||||
Sbjct: 2406241 aggaccacgacttctgcatcgtctccgacgccgacctgcacatcaacgcccacttcatcg 2406182
Query: 479 gcaagc 484
||||||
Sbjct: 2406181 gcaagc 2406176
Score = 107 bits (54), Expect = 2e-020
Identities = 108/126 (85%)
Strand = Plus / Minus
Query: 359 cgtgcggcgacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgcc 418
|||||||||||||||| |||| |||||||||||||||| ||||||||| ||||||
Sbjct: 2402200 cgtgcggcgacccgcggttcaccggcggcgacggcaacaacttctactttcacggcaaga 2402141
Query: 419 gggacgccgacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcg 478
|||| |||||||||| | |||||||| |||||||||||||||||| ||||||||||
Sbjct: 2402140 aggaccacgacttctgcatcgtctccgacgccgacctccacatcaacgcccacttcatcg 2402081
Query: 479 gcaagc 484
||||||
Sbjct: 2402080 gcaagc 2402075
Score = 79.8 bits (40), Expect = 3e-012
Identities = 103/124 (83%)
Strand = Plus / Plus
Query: 359 cgtgcggcgacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgcc 418
||||||||||||| || |||| ||||| |||||||||| |||||||||||||||||
Sbjct: 2412551 cgtgcggcgacccacggttcaccggcgccgacggcaacaccttctacttccacggcaaga 2412610
Query: 419 gggacgccgacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcg 478
||| ||||||||| | |||||||| |||||| ||||||||||| ||||||||||
Sbjct: 2412611 aggagcaggacttctgcatcgtctccgacgccgacctgcacatcaacgcccacttcatcg 2412670
Query: 479 gcaa 482
||||
Sbjct: 2412671 gcaa 2412674
Score = 77.8 bits (39), Expect = 1e-011
Identities = 81/95 (85%)
Strand = Plus / Plus
Query: 824 gcctcgcgcaccttgacctggccttcaagttcggcgcgctcaccgccgacgtgcacggcg 883
||||||| ||||| ||||| | |||||||||| || ||| ||| |||||| || ||||
Sbjct: 2408861 gcctcgctcacctcgacctcggcttcaagttctacgacctctccgacgacgtccatggcg 2408920
Query: 884 tggtcggccagacgtaccgctccgactacgtcaac 918
|| |||||||||| |||||||||||||||||||||
Sbjct: 2408921 tgctcggccagacctaccgctccgactacgtcaac 2408955
Score = 77.8 bits (39), Expect = 1e-011
Identities = 81/95 (85%)
Strand = Plus / Minus
Query: 824 gcctcgcgcaccttgacctggccttcaagttcggcgcgctcaccgccgacgtgcacggcg 883
||||||| ||||| ||| | | |||||||||| || ||| ||| |||||| |||||||
Sbjct: 2405839 gcctcgctcacctcgacatcggcttcaagttctacgacctctccgacgacgtccacggcg 2405780
Query: 884 tggtcggccagacgtaccgctccgactacgtcaac 918
|| |||||||||| |||||||||||||||||||||
Sbjct: 2405779 tgctcggccagacctaccgctccgactacgtcaac 2405745
Score = 65.9 bits (33), Expect = 5e-008
Identities = 96/117 (82%)
Strand = Plus / Minus
Query: 802 tacggcgtcacggccgacgactgcctcgcgcaccttgacctggccttcaagttcggcgcg 861
||||||||||| | || ||| ||||||| ||||| ||||| | |||||||||| ||
Sbjct: 2401760 tacggcgtcaccgaggaggacagcctcgcccacctcgacctcggcttcaagttctacgac 2401701
Query: 862 ctcaccgccgacgtgcacggcgtggtcggccagacgtaccgctccgactacgtcaac 918
||| ||| ||| || || ||||| |||||||||| |||||||||||||||||||||
Sbjct: 2401700 ctctccgacgatgtccatggcgtcctcggccagacctaccgctccgactacgtcaac 2401644
Score = 44.1 bits (22), Expect = 0.19
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 192 ggagaaggagaaggagaagccc 213
||||||||||||||||||||||
Sbjct: 202714 ggagaaggagaaggagaagccc 202735
>ref|NT_107220.1| Oryza sativa (japonica cultivar-group)
Length = 436435
Score = 115 bits (58), Expect = 6e-023
Identities = 108/122 (88%), Gaps = 2/122 (1%)
Strand = Plus / Plus
Query: 367 gacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgccgggacgcc 426
|||||||| ||||||||||||||||||||| | |||||||||||||||||||| ||| |
Sbjct: 295266 gacccgcggttcatcggcggcgacggcaacacgttctacttccacggccgccgtgaccgc 295325
Query: 427 gacttctgcgtgctctccgaccgcg-acctccacatcaacgcgcacttcatcggcaagca 485
||||||||| |||||||||| |||| |||| |||||||||| |||||| ||||||| ||
Sbjct: 295326 gacttctgcctgctctccga-cgcgaacctgcacatcaacggccacttcgtcggcaacca 295384
Query: 486 cg 487
||
Sbjct: 295385 cg 295386
Score = 113 bits (57), Expect = 2e-022
Identities = 174/213 (81%)
Strand = Plus / Plus
Query: 688 ctgtccgtcacccgcaccagcgcggccaacggcgtgctcgtctcgctcgacggcaggttc 747
|||||||| || || |||| |||||||||||||| |||||| |||||||||| ||||
Sbjct: 295581 ctgtccgtgacgcggaccaaggcggccaacggcgtcctcgtcgagctcgacggcgtgttc 295640
Query: 748 accatcagggccaacgccgtgcccatcacagaggaggagtccagggtgcaccggtacggc 807
| |||| || |||| ||||||||||| ||||||| || ||| | ||| |||||||
Sbjct: 295641 aagatcaccgcgaacgtggtgcccatcaccaaggaggactcgaggatccacaggtacggg 295700
Query: 808 gtcacggccgacgactgcctcgcgcaccttgacctggccttcaagttcggcgcgctcacc 867
||||| | ||| ||||||||||| ||||| |||||||| ||||||||| ||| ||||||
Sbjct: 295701 gtcaccgacgatgactgcctcgcccacctcgacctggcgttcaagttctacgccctcacc 295760
Query: 868 gccgacgtgcacggcgtggtcggccagacgtac 900
| |||||| || |||||| | ||||||||||||
Sbjct: 295761 gacgacgtccatggcgtgctgggccagacgtac 295793
Score = 46.1 bits (23), Expect = 0.048
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 556 ctctacgtcggcgccaggaagacggccgcgtgggacgacgacgtcgaccgc 606
|||||||||||||| | | |||||||| ||||||||||||| |||||||
Sbjct: 295455 ctctacgtcggcgcgcgcaggacggccgtgtgggacgacgactccgaccgc 295505
>ref|NT_079870.2| Oryza sativa (japonica cultivar-group)
Length = 867822
Score = 115 bits (58), Expect = 6e-023
Identities = 153/184 (83%), Gaps = 3/184 (1%)
Strand = Plus / Plus
Query: 361 tgcggcgacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgccgg 420
||||||||||| ||||||| |||||||||||||||| |||||||||||||||| |
Sbjct: 378390 tgcggcgacccccgcttcaccggcggcgacggcaacaacttctacttccacggcaagaag 378449
Query: 421 gacgccgacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcggc 480
||| |||||||||| | ||||||||| || ||||||| ||||||| ||||||||||||
Sbjct: 378450 gaccgcgacttctgcctcctctccgacgccgccctccacgtcaacgcccacttcatcggc 378509
Query: 481 aagcacggcgccgacggcatgtcccgggacttcacgtggatccaggccatcgccgtgctc 540
|||| || || || ||||||||| |||||||| ||||||||||| ||| ||| |||
Sbjct: 378510 aagc---gcaacgccgccatgtcccgcgacttcacctggatccaggcgctcggcgtcctc 378566
Query: 541 ttcg 544
||||
Sbjct: 378567 ttcg 378570
Score = 113 bits (57), Expect = 2e-022
Identities = 102/117 (87%)
Strand = Plus / Plus
Query: 802 tacggcgtcacggccgacgactgcctcgcgcaccttgacctggccttcaagttcggcgcg 861
||||||||| | | |||||||||||||| ||||| ||||| | ||||||||||| |||
Sbjct: 378834 tacggcgtcgccgacgacgactgcctcgtccacctcgacctcggcttcaagttcgaggcg 378893
Query: 862 ctcaccgccgacgtgcacggcgtggtcggccagacgtaccgctccgactacgtcaac 918
||||||| |||||| || |||||| |||||||||| |||||||||||||||||||||
Sbjct: 378894 ctcaccgacgacgtccatggcgtgctcggccagacctaccgctccgactacgtcaac 378950
Score = 44.1 bits (22), Expect = 0.19
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaagc 211
||||||||||||||||||||||
Sbjct: 568420 aaggagaaggagaaggagaagc 568441
>dbj|AP003448.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:OJ1656_A11
Length = 148887
Score = 115 bits (58), Expect = 6e-023
Identities = 109/126 (86%)
Strand = Plus / Plus
Query: 359 cgtgcggcgacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgcc 418
|||||||||||||||| |||| |||||||||||||||| ||||||||||||||||
Sbjct: 32200 cgtgcggcgacccgcggttcaccggcggcgacggcaacaacttctacttccacggcaaga 32259
Query: 419 gggacgccgacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcg 478
|||| |||||||||| | |||||||| |||||||||||||||||| ||||||||||
Sbjct: 32260 aggaccacgacttctgcatcgtctccgacgccgacctccacatcaacgcccacttcatcg 32319
Query: 479 gcaagc 484
||||||
Sbjct: 32320 gcaagc 32325
Score = 107 bits (54), Expect = 2e-020
Identities = 108/126 (85%)
Strand = Plus / Minus
Query: 359 cgtgcggcgacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgcc 418
||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||
Sbjct: 30102 cgtgcggcgaccctcgcttcaccggcggcgacggcaacaacttctacttccacggcaaga 30043
Query: 419 gggacgccgacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcg 478
|||| |||||||||| | |||||||| |||||| ||||||||||| ||||||||||
Sbjct: 30042 aggaccacgacttctgcatcgtctccgacgccgacctgcacatcaacgcccacttcatcg 29983
Query: 479 gcaagc 484
||||||
Sbjct: 29982 gcaagc 29977
Score = 107 bits (54), Expect = 2e-020
Identities = 108/126 (85%)
Strand = Plus / Minus
Query: 359 cgtgcggcgacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgcc 418
|||||||||||||||| |||| |||||||||||||||| ||||||||| ||||||
Sbjct: 26001 cgtgcggcgacccgcggttcaccggcggcgacggcaacaacttctactttcacggcaaga 25942
Query: 419 gggacgccgacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcg 478
|||| |||||||||| | |||||||| |||||||||||||||||| ||||||||||
Sbjct: 25941 aggaccacgacttctgcatcgtctccgacgccgacctccacatcaacgcccacttcatcg 25882
Query: 479 gcaagc 484
||||||
Sbjct: 25881 gcaagc 25876
Score = 79.8 bits (40), Expect = 3e-012
Identities = 103/124 (83%)
Strand = Plus / Plus
Query: 359 cgtgcggcgacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgcc 418
||||||||||||| || |||| ||||| |||||||||| |||||||||||||||||
Sbjct: 36352 cgtgcggcgacccacggttcaccggcgccgacggcaacaccttctacttccacggcaaga 36411
Query: 419 gggacgccgacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcg 478
||| ||||||||| | |||||||| |||||| ||||||||||| ||||||||||
Sbjct: 36412 aggagcaggacttctgcatcgtctccgacgccgacctgcacatcaacgcccacttcatcg 36471
Query: 479 gcaa 482
||||
Sbjct: 36472 gcaa 36475
Score = 77.8 bits (39), Expect = 1e-011
Identities = 81/95 (85%)
Strand = Plus / Plus
Query: 824 gcctcgcgcaccttgacctggccttcaagttcggcgcgctcaccgccgacgtgcacggcg 883
||||||| ||||| ||||| | |||||||||| || ||| ||| |||||| || ||||
Sbjct: 32662 gcctcgctcacctcgacctcggcttcaagttctacgacctctccgacgacgtccatggcg 32721
Query: 884 tggtcggccagacgtaccgctccgactacgtcaac 918
|| |||||||||| |||||||||||||||||||||
Sbjct: 32722 tgctcggccagacctaccgctccgactacgtcaac 32756
Score = 77.8 bits (39), Expect = 1e-011
Identities = 81/95 (85%)
Strand = Plus / Minus
Query: 824 gcctcgcgcaccttgacctggccttcaagttcggcgcgctcaccgccgacgtgcacggcg 883
||||||| ||||| ||| | | |||||||||| || ||| ||| |||||| |||||||
Sbjct: 29640 gcctcgctcacctcgacatcggcttcaagttctacgacctctccgacgacgtccacggcg 29581
Query: 884 tggtcggccagacgtaccgctccgactacgtcaac 918
|| |||||||||| |||||||||||||||||||||
Sbjct: 29580 tgctcggccagacctaccgctccgactacgtcaac 29546
Score = 65.9 bits (33), Expect = 5e-008
Identities = 96/117 (82%)
Strand = Plus / Minus
Query: 802 tacggcgtcacggccgacgactgcctcgcgcaccttgacctggccttcaagttcggcgcg 861
||||||||||| | || ||| ||||||| ||||| ||||| | |||||||||| ||
Sbjct: 25561 tacggcgtcaccgaggaggacagcctcgcccacctcgacctcggcttcaagttctacgac 25502
Query: 862 ctcaccgccgacgtgcacggcgtggtcggccagacgtaccgctccgactacgtcaac 918
||| ||| ||| || || ||||| |||||||||| |||||||||||||||||||||
Sbjct: 25501 ctctccgacgatgtccatggcgtcctcggccagacctaccgctccgactacgtcaac 25445
>gb|CH401191.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000028
genomic scaffold, whole genome shotgun sequence
Length = 7678539
Score = 115 bits (58), Expect = 6e-023
Identities = 153/184 (83%), Gaps = 3/184 (1%)
Strand = Plus / Plus
Query: 361 tgcggcgacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgccgg 420
||||||||||| ||||||| |||||||||||||||| |||||||||||||||| |
Sbjct: 369127 tgcggcgacccccgcttcaccggcggcgacggcaacaacttctacttccacggcaagaag 369186
Query: 421 gacgccgacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcggc 480
||| |||||||||| | ||||||||| || ||||||| ||||||| ||||||||||||
Sbjct: 369187 gaccgcgacttctgcctcctctccgacgccgccctccacgtcaacgcccacttcatcggc 369246
Query: 481 aagcacggcgccgacggcatgtcccgggacttcacgtggatccaggccatcgccgtgctc 540
|||| || || || ||||||||| |||||||| ||||||||||| ||| ||| |||
Sbjct: 369247 aagc---gcaacgccgccatgtcccgcgacttcacctggatccaggcgctcggcgtcctc 369303
Query: 541 ttcg 544
||||
Sbjct: 369304 ttcg 369307
Score = 113 bits (57), Expect = 2e-022
Identities = 102/117 (87%)
Strand = Plus / Plus
Query: 802 tacggcgtcacggccgacgactgcctcgcgcaccttgacctggccttcaagttcggcgcg 861
||||||||| | | |||||||||||||| ||||| ||||| | ||||||||||| |||
Sbjct: 369571 tacggcgtcgccgacgacgactgcctcgtccacctcgacctcggcttcaagttcgaggcg 369630
Query: 862 ctcaccgccgacgtgcacggcgtggtcggccagacgtaccgctccgactacgtcaac 918
||||||| |||||| || |||||| |||||||||| |||||||||||||||||||||
Sbjct: 369631 ctcaccgacgacgtccatggcgtgctcggccagacctaccgctccgactacgtcaac 369687
Score = 44.1 bits (22), Expect = 0.19
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaagc 211
||||||||||||||||||||||
Sbjct: 560094 aaggagaaggagaaggagaagc 560115
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 115 bits (58), Expect = 6e-023
Identities = 109/126 (86%)
Strand = Plus / Plus
Query: 359 cgtgcggcgacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgcc 418
|||||||||||||||| |||| |||||||||||||||| ||||||||||||||||
Sbjct: 16890148 cgtgcggcgacccgcggttcaccggcggcgacggcaacaacttctacttccacggcaaga 16890207
Query: 419 gggacgccgacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcg 478
|||| |||||||||| | |||||||| |||||||||||||||||| ||||||||||
Sbjct: 16890208 aggaccacgacttctgcatcgtctccgacgccgacctccacatcaacgcccacttcatcg 16890267
Query: 479 gcaagc 484
||||||
Sbjct: 16890268 gcaagc 16890273
Score = 107 bits (54), Expect = 2e-020
Identities = 108/126 (85%)
Strand = Plus / Minus
Query: 359 cgtgcggcgacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgcc 418
||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||
Sbjct: 16888050 cgtgcggcgaccctcgcttcaccggcggcgacggcaacaacttctacttccacggcaaga 16887991
Query: 419 gggacgccgacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcg 478
|||| |||||||||| | |||||||| |||||| ||||||||||| ||||||||||
Sbjct: 16887990 aggaccacgacttctgcatcgtctccgacgccgacctgcacatcaacgcccacttcatcg 16887931
Query: 479 gcaagc 484
||||||
Sbjct: 16887930 gcaagc 16887925
Score = 107 bits (54), Expect = 2e-020
Identities = 108/126 (85%)
Strand = Plus / Minus
Query: 359 cgtgcggcgacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgcc 418
|||||||||||||||| |||| |||||||||||||||| ||||||||| ||||||
Sbjct: 16883948 cgtgcggcgacccgcggttcaccggcggcgacggcaacaacttctactttcacggcaaga 16883889
Query: 419 gggacgccgacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcg 478
|||| |||||||||| | |||||||| |||||||||||||||||| ||||||||||
Sbjct: 16883888 aggaccacgacttctgcatcgtctccgacgccgacctccacatcaacgcccacttcatcg 16883829
Query: 479 gcaagc 484
||||||
Sbjct: 16883828 gcaagc 16883823
Score = 79.8 bits (40), Expect = 3e-012
Identities = 103/124 (83%)
Strand = Plus / Plus
Query: 359 cgtgcggcgacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgcc 418
||||||||||||| || |||| ||||| |||||||||| |||||||||||||||||
Sbjct: 16894299 cgtgcggcgacccacggttcaccggcgccgacggcaacaccttctacttccacggcaaga 16894358
Query: 419 gggacgccgacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcg 478
||| ||||||||| | |||||||| |||||| ||||||||||| ||||||||||
Sbjct: 16894359 aggagcaggacttctgcatcgtctccgacgccgacctgcacatcaacgcccacttcatcg 16894418
Query: 479 gcaa 482
||||
Sbjct: 16894419 gcaa 16894422
Score = 77.8 bits (39), Expect = 1e-011
Identities = 81/95 (85%)
Strand = Plus / Plus
Query: 824 gcctcgcgcaccttgacctggccttcaagttcggcgcgctcaccgccgacgtgcacggcg 883
||||||| ||||| ||||| | |||||||||| || ||| ||| |||||| || ||||
Sbjct: 16890610 gcctcgctcacctcgacctcggcttcaagttctacgacctctccgacgacgtccatggcg 16890669
Query: 884 tggtcggccagacgtaccgctccgactacgtcaac 918
|| |||||||||| |||||||||||||||||||||
Sbjct: 16890670 tgctcggccagacctaccgctccgactacgtcaac 16890704
Score = 77.8 bits (39), Expect = 1e-011
Identities = 81/95 (85%)
Strand = Plus / Minus
Query: 824 gcctcgcgcaccttgacctggccttcaagttcggcgcgctcaccgccgacgtgcacggcg 883
||||||| ||||| ||| | | |||||||||| || ||| ||| |||||| |||||||
Sbjct: 16887588 gcctcgctcacctcgacatcggcttcaagttctacgacctctccgacgacgtccacggcg 16887529
Query: 884 tggtcggccagacgtaccgctccgactacgtcaac 918
|| |||||||||| |||||||||||||||||||||
Sbjct: 16887528 tgctcggccagacctaccgctccgactacgtcaac 16887494
Score = 65.9 bits (33), Expect = 5e-008
Identities = 96/117 (82%)
Strand = Plus / Minus
Query: 802 tacggcgtcacggccgacgactgcctcgcgcaccttgacctggccttcaagttcggcgcg 861
||||||||||| | || ||| ||||||| ||||| ||||| | |||||||||| ||
Sbjct: 16883508 tacggcgtcaccgaggaggacagcctcgcccacctcgacctcggcttcaagttctacgac 16883449
Query: 862 ctcaccgccgacgtgcacggcgtggtcggccagacgtaccgctccgactacgtcaac 918
||| ||| ||| || || ||||| |||||||||| |||||||||||||||||||||
Sbjct: 16883448 ctctccgacgatgtccatggcgtcctcggccagacctaccgctccgactacgtcaac 16883392
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 115 bits (58), Expect = 6e-023
Identities = 109/126 (86%)
Strand = Plus / Plus
Query: 359 cgtgcggcgacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgcc 418
|||||||||||||||| |||| |||||||||||||||| ||||||||||||||||
Sbjct: 42091869 cgtgcggcgacccgcggttcaccggcggcgacggcaacaacttctacttccacggcaaga 42091928
Query: 419 gggacgccgacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcg 478
|||| |||||||||| | |||||||| |||||||||||||||||| ||||||||||
Sbjct: 42091929 aggaccacgacttctgcatcgtctccgacgccgacctccacatcaacgcccacttcatcg 42091988
Query: 479 gcaagc 484
||||||
Sbjct: 42091989 gcaagc 42091994
Score = 107 bits (54), Expect = 2e-020
Identities = 108/126 (85%)
Strand = Plus / Minus
Query: 359 cgtgcggcgacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgcc 418
||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||
Sbjct: 42089771 cgtgcggcgaccctcgcttcaccggcggcgacggcaacaacttctacttccacggcaaga 42089712
Query: 419 gggacgccgacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcg 478
|||| |||||||||| | |||||||| |||||| ||||||||||| ||||||||||
Sbjct: 42089711 aggaccacgacttctgcatcgtctccgacgccgacctgcacatcaacgcccacttcatcg 42089652
Query: 479 gcaagc 484
||||||
Sbjct: 42089651 gcaagc 42089646
Score = 107 bits (54), Expect = 2e-020
Identities = 108/126 (85%)
Strand = Plus / Minus
Query: 359 cgtgcggcgacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgcc 418
|||||||||||||||| |||| |||||||||||||||| ||||||||| ||||||
Sbjct: 42085669 cgtgcggcgacccgcggttcaccggcggcgacggcaacaacttctactttcacggcaaga 42085610
Query: 419 gggacgccgacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcg 478
|||| |||||||||| | |||||||| |||||||||||||||||| ||||||||||
Sbjct: 42085609 aggaccacgacttctgcatcgtctccgacgccgacctccacatcaacgcccacttcatcg 42085550
Query: 479 gcaagc 484
||||||
Sbjct: 42085549 gcaagc 42085544
Score = 79.8 bits (40), Expect = 3e-012
Identities = 103/124 (83%)
Strand = Plus / Plus
Query: 359 cgtgcggcgacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgcc 418
||||||||||||| || |||| ||||| |||||||||| |||||||||||||||||
Sbjct: 42096020 cgtgcggcgacccacggttcaccggcgccgacggcaacaccttctacttccacggcaaga 42096079
Query: 419 gggacgccgacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcg 478
||| ||||||||| | |||||||| |||||| ||||||||||| ||||||||||
Sbjct: 42096080 aggagcaggacttctgcatcgtctccgacgccgacctgcacatcaacgcccacttcatcg 42096139
Query: 479 gcaa 482
||||
Sbjct: 42096140 gcaa 42096143
Score = 77.8 bits (39), Expect = 1e-011
Identities = 81/95 (85%)
Strand = Plus / Plus
Query: 824 gcctcgcgcaccttgacctggccttcaagttcggcgcgctcaccgccgacgtgcacggcg 883
||||||| ||||| ||||| | |||||||||| || ||| ||| |||||| || ||||
Sbjct: 42092331 gcctcgctcacctcgacctcggcttcaagttctacgacctctccgacgacgtccatggcg 42092390
Query: 884 tggtcggccagacgtaccgctccgactacgtcaac 918
|| |||||||||| |||||||||||||||||||||
Sbjct: 42092391 tgctcggccagacctaccgctccgactacgtcaac 42092425
Score = 77.8 bits (39), Expect = 1e-011
Identities = 81/95 (85%)
Strand = Plus / Minus
Query: 824 gcctcgcgcaccttgacctggccttcaagttcggcgcgctcaccgccgacgtgcacggcg 883
||||||| ||||| ||| | | |||||||||| || ||| ||| |||||| |||||||
Sbjct: 42089309 gcctcgctcacctcgacatcggcttcaagttctacgacctctccgacgacgtccacggcg 42089250
Query: 884 tggtcggccagacgtaccgctccgactacgtcaac 918
|| |||||||||| |||||||||||||||||||||
Sbjct: 42089249 tgctcggccagacctaccgctccgactacgtcaac 42089215
Score = 65.9 bits (33), Expect = 5e-008
Identities = 96/117 (82%)
Strand = Plus / Minus
Query: 802 tacggcgtcacggccgacgactgcctcgcgcaccttgacctggccttcaagttcggcgcg 861
||||||||||| | || ||| ||||||| ||||| ||||| | |||||||||| ||
Sbjct: 42085229 tacggcgtcaccgaggaggacagcctcgcccacctcgacctcggcttcaagttctacgac 42085170
Query: 862 ctcaccgccgacgtgcacggcgtggtcggccagacgtaccgctccgactacgtcaac 918
||| ||| ||| || || ||||| |||||||||| |||||||||||||||||||||
Sbjct: 42085169 ctctccgacgatgtccatggcgtcctcggccagacctaccgctccgactacgtcaac 42085113
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 115 bits (58), Expect = 6e-023
Identities = 109/126 (86%)
Strand = Plus / Plus
Query: 359 cgtgcggcgacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgcc 418
|||||||||||||||| |||| |||||||||||||||| ||||||||||||||||
Sbjct: 42699435 cgtgcggcgacccgcggttcaccggcggcgacggcaacaacttctacttccacggcaaga 42699494
Query: 419 gggacgccgacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcg 478
|||| |||||||||| | |||||||| |||||||||||||||||| ||||||||||
Sbjct: 42699495 aggaccacgacttctgcatcgtctccgacgccgacctccacatcaacgcccacttcatcg 42699554
Query: 479 gcaagc 484
||||||
Sbjct: 42699555 gcaagc 42699560
Score = 107 bits (54), Expect = 2e-020
Identities = 108/126 (85%)
Strand = Plus / Minus
Query: 359 cgtgcggcgacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgcc 418
||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||
Sbjct: 42697337 cgtgcggcgaccctcgcttcaccggcggcgacggcaacaacttctacttccacggcaaga 42697278
Query: 419 gggacgccgacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcg 478
|||| |||||||||| | |||||||| |||||| ||||||||||| ||||||||||
Sbjct: 42697277 aggaccacgacttctgcatcgtctccgacgccgacctgcacatcaacgcccacttcatcg 42697218
Query: 479 gcaagc 484
||||||
Sbjct: 42697217 gcaagc 42697212
Score = 107 bits (54), Expect = 2e-020
Identities = 108/126 (85%)
Strand = Plus / Minus
Query: 359 cgtgcggcgacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgcc 418
|||||||||||||||| |||| |||||||||||||||| ||||||||| ||||||
Sbjct: 42693236 cgtgcggcgacccgcggttcaccggcggcgacggcaacaacttctactttcacggcaaga 42693177
Query: 419 gggacgccgacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcg 478
|||| |||||||||| | |||||||| |||||||||||||||||| ||||||||||
Sbjct: 42693176 aggaccacgacttctgcatcgtctccgacgccgacctccacatcaacgcccacttcatcg 42693117
Query: 479 gcaagc 484
||||||
Sbjct: 42693116 gcaagc 42693111
Score = 79.8 bits (40), Expect = 3e-012
Identities = 103/124 (83%)
Strand = Plus / Plus
Query: 359 cgtgcggcgacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgcc 418
||||||||||||| || |||| ||||| |||||||||| |||||||||||||||||
Sbjct: 42703587 cgtgcggcgacccacggttcaccggcgccgacggcaacaccttctacttccacggcaaga 42703646
Query: 419 gggacgccgacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcg 478
||| ||||||||| | |||||||| |||||| ||||||||||| ||||||||||
Sbjct: 42703647 aggagcaggacttctgcatcgtctccgacgccgacctgcacatcaacgcccacttcatcg 42703706
Query: 479 gcaa 482
||||
Sbjct: 42703707 gcaa 42703710
Score = 77.8 bits (39), Expect = 1e-011
Identities = 81/95 (85%)
Strand = Plus / Plus
Query: 824 gcctcgcgcaccttgacctggccttcaagttcggcgcgctcaccgccgacgtgcacggcg 883
||||||| ||||| ||||| | |||||||||| || ||| ||| |||||| || ||||
Sbjct: 42699897 gcctcgctcacctcgacctcggcttcaagttctacgacctctccgacgacgtccatggcg 42699956
Query: 884 tggtcggccagacgtaccgctccgactacgtcaac 918
|| |||||||||| |||||||||||||||||||||
Sbjct: 42699957 tgctcggccagacctaccgctccgactacgtcaac 42699991
Score = 77.8 bits (39), Expect = 1e-011
Identities = 81/95 (85%)
Strand = Plus / Minus
Query: 824 gcctcgcgcaccttgacctggccttcaagttcggcgcgctcaccgccgacgtgcacggcg 883
||||||| ||||| ||| | | |||||||||| || ||| ||| |||||| |||||||
Sbjct: 42696875 gcctcgctcacctcgacatcggcttcaagttctacgacctctccgacgacgtccacggcg 42696816
Query: 884 tggtcggccagacgtaccgctccgactacgtcaac 918
|| |||||||||| |||||||||||||||||||||
Sbjct: 42696815 tgctcggccagacctaccgctccgactacgtcaac 42696781
Score = 65.9 bits (33), Expect = 5e-008
Identities = 96/117 (82%)
Strand = Plus / Minus
Query: 802 tacggcgtcacggccgacgactgcctcgcgcaccttgacctggccttcaagttcggcgcg 861
||||||||||| | || ||| ||||||| ||||| ||||| | |||||||||| ||
Sbjct: 42692796 tacggcgtcaccgaggaggacagcctcgcccacctcgacctcggcttcaagttctacgac 42692737
Query: 862 ctcaccgccgacgtgcacggcgtggtcggccagacgtaccgctccgactacgtcaac 918
||| ||| ||| || || ||||| |||||||||| |||||||||||||||||||||
Sbjct: 42692736 ctctccgacgatgtccatggcgtcctcggccagacctaccgctccgactacgtcaac 42692680
Score = 44.1 bits (22), Expect = 0.19
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 192 ggagaaggagaaggagaagccc 213
||||||||||||||||||||||
Sbjct: 40493750 ggagaaggagaaggagaagccc 40493771
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 115 bits (58), Expect = 6e-023
Identities = 108/122 (88%), Gaps = 2/122 (1%)
Strand = Plus / Plus
Query: 367 gacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgccgggacgcc 426
|||||||| ||||||||||||||||||||| | |||||||||||||||||||| ||| |
Sbjct: 27262843 gacccgcggttcatcggcggcgacggcaacacgttctacttccacggccgccgtgaccgc 27262902
Query: 427 gacttctgcgtgctctccgaccgcg-acctccacatcaacgcgcacttcatcggcaagca 485
||||||||| |||||||||| |||| |||| |||||||||| |||||| ||||||| ||
Sbjct: 27262903 gacttctgcctgctctccga-cgcgaacctgcacatcaacggccacttcgtcggcaacca 27262961
Query: 486 cg 487
||
Sbjct: 27262962 cg 27262963
Score = 115 bits (58), Expect = 6e-023
Identities = 153/184 (83%), Gaps = 3/184 (1%)
Strand = Plus / Plus
Query: 361 tgcggcgacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgccgg 420
||||||||||| ||||||| |||||||||||||||| |||||||||||||||| |
Sbjct: 378390 tgcggcgacccccgcttcaccggcggcgacggcaacaacttctacttccacggcaagaag 378449
Query: 421 gacgccgacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcggc 480
||| |||||||||| | ||||||||| || ||||||| ||||||| ||||||||||||
Sbjct: 378450 gaccgcgacttctgcctcctctccgacgccgccctccacgtcaacgcccacttcatcggc 378509
Query: 481 aagcacggcgccgacggcatgtcccgggacttcacgtggatccaggccatcgccgtgctc 540
|||| || || || ||||||||| |||||||| ||||||||||| ||| ||| |||
Sbjct: 378510 aagc---gcaacgccgccatgtcccgcgacttcacctggatccaggcgctcggcgtcctc 378566
Query: 541 ttcg 544
||||
Sbjct: 378567 ttcg 378570
Score = 113 bits (57), Expect = 2e-022
Identities = 174/213 (81%)
Strand = Plus / Plus
Query: 688 ctgtccgtcacccgcaccagcgcggccaacggcgtgctcgtctcgctcgacggcaggttc 747
|||||||| || || |||| |||||||||||||| |||||| |||||||||| ||||
Sbjct: 27263158 ctgtccgtgacgcggaccaaggcggccaacggcgtcctcgtcgagctcgacggcgtgttc 27263217
Query: 748 accatcagggccaacgccgtgcccatcacagaggaggagtccagggtgcaccggtacggc 807
| |||| || |||| ||||||||||| ||||||| || ||| | ||| |||||||
Sbjct: 27263218 aagatcaccgcgaacgtggtgcccatcaccaaggaggactcgaggatccacaggtacggg 27263277
Query: 808 gtcacggccgacgactgcctcgcgcaccttgacctggccttcaagttcggcgcgctcacc 867
||||| | ||| ||||||||||| ||||| |||||||| ||||||||| ||| ||||||
Sbjct: 27263278 gtcaccgacgatgactgcctcgcccacctcgacctggcgttcaagttctacgccctcacc 27263337
Query: 868 gccgacgtgcacggcgtggtcggccagacgtac 900
| |||||| || |||||| | ||||||||||||
Sbjct: 27263338 gacgacgtccatggcgtgctgggccagacgtac 27263370
Score = 113 bits (57), Expect = 2e-022
Identities = 102/117 (87%)
Strand = Plus / Plus
Query: 802 tacggcgtcacggccgacgactgcctcgcgcaccttgacctggccttcaagttcggcgcg 861
||||||||| | | |||||||||||||| ||||| ||||| | ||||||||||| |||
Sbjct: 378834 tacggcgtcgccgacgacgactgcctcgtccacctcgacctcggcttcaagttcgaggcg 378893
Query: 862 ctcaccgccgacgtgcacggcgtggtcggccagacgtaccgctccgactacgtcaac 918
||||||| |||||| || |||||| |||||||||| |||||||||||||||||||||
Sbjct: 378894 ctcaccgacgacgtccatggcgtgctcggccagacctaccgctccgactacgtcaac 378950
Score = 50.1 bits (25), Expect = 0.003
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 186 gcacaaggagaaggagaaggagaag 210
|||||||||||||||||||||||||
Sbjct: 22424042 gcacaaggagaaggagaaggagaag 22424066
Score = 46.1 bits (23), Expect = 0.048
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 556 ctctacgtcggcgccaggaagacggccgcgtgggacgacgacgtcgaccgc 606
|||||||||||||| | | |||||||| ||||||||||||| |||||||
Sbjct: 27263032 ctctacgtcggcgcgcgcaggacggccgtgtgggacgacgactccgaccgc 27263082
Score = 44.1 bits (22), Expect = 0.19
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaagc 211
||||||||||||||||||||||
Sbjct: 568420 aaggagaaggagaaggagaagc 568441
>dbj|AK108077.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-138-E01, full
insert sequence
Length = 1481
Score = 109 bits (55), Expect = 4e-021
Identities = 103/119 (86%)
Strand = Plus / Plus
Query: 366 cgacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgccgggacgc 425
||||||||| ||| ||||||||||||||||| ||| |||||||| ||| ||||||
Sbjct: 397 cgacccgcggttcgtcggcggcgacggcaacaagttcctgttccacgggcgcaaggacgc 456
Query: 426 cgacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcggcaagc 484
|||||||||| ||||||||||| | |||| ||||||||||||||||||||||||||||
Sbjct: 457 cgacttctgcctgctctccgacgccaacctgcacatcaacgcgcacttcatcggcaagc 515
Score = 103 bits (52), Expect = 2e-019
Identities = 193/240 (80%)
Strand = Plus / Plus
Query: 677 ccgtgccggcgctgtccgtcacccgcaccagcgcggccaacggcgtgctcgtctcgctcg 736
|||| |||||||| || ||| ||||||| || |||||||||||||| | || ||||
Sbjct: 705 ccgttccggcgctctcggtcttccgcaccggcccggccaacggcgtggtggtgcgcctcg 764
Query: 737 acggcaggttcaccatcagggccaacgccgtgcccatcacagaggaggagtccagggtgc 796
||||| ||||| |||| |||||||| |||||| |||| |||||||| || ||| | |
Sbjct: 765 acggccggttccgcatcgtcgccaacgcggtgcccgtcacggaggaggactcgaggatcc 824
Query: 797 accggtacggcgtcacggccgacgactgcctcgcgcaccttgacctggccttcaagttcg 856
|| | |||||| |||| ||||||||| ||||||| ||||| | |||| |||||||||
Sbjct: 825 acggctacggcctcaccgccgacgacagcctcgcccacctcaatgtggcgttcaagttct 884
Query: 857 gcgcgctcaccgccgacgtgcacggcgtggtcggccagacgtaccgctccgactacgtca 916
| | ||| ||||||||||||||||||| | |||||||| |||||| ||||||||||||
Sbjct: 885 actccatcagcgccgacgtgcacggcgtgctgggccagacctaccgccccgactacgtca 944
>ref|XM_472395.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1068
Score = 109 bits (55), Expect = 4e-021
Identities = 103/119 (86%)
Strand = Plus / Plus
Query: 366 cgacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgccgggacgc 425
||||||||| ||| ||||||||||||||||| ||| |||||||| ||| ||||||
Sbjct: 312 cgacccgcggttcgtcggcggcgacggcaacaagttcctgttccacgggcgcaaggacgc 371
Query: 426 cgacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcggcaagc 484
|||||||||| ||||||||||| | |||| ||||||||||||||||||||||||||||
Sbjct: 372 cgacttctgcctgctctccgacgccaacctgcacatcaacgcgcacttcatcggcaagc 430
Score = 103 bits (52), Expect = 2e-019
Identities = 193/240 (80%)
Strand = Plus / Plus
Query: 677 ccgtgccggcgctgtccgtcacccgcaccagcgcggccaacggcgtgctcgtctcgctcg 736
|||| |||||||| || ||| ||||||| || |||||||||||||| | || ||||
Sbjct: 620 ccgttccggcgctctcggtcttccgcaccggcccggccaacggcgtggtggtgcgcctcg 679
Query: 737 acggcaggttcaccatcagggccaacgccgtgcccatcacagaggaggagtccagggtgc 796
||||| ||||| |||| |||||||| |||||| |||| |||||||| || ||| | |
Sbjct: 680 acggccggttccgcatcgtcgccaacgcggtgcccgtcacggaggaggactcgaggatcc 739
Query: 797 accggtacggcgtcacggccgacgactgcctcgcgcaccttgacctggccttcaagttcg 856
|| | |||||| |||| ||||||||| ||||||| ||||| | |||| |||||||||
Sbjct: 740 acggctacggcctcaccgccgacgacagcctcgcccacctcaatgtggcgttcaagttct 799
Query: 857 gcgcgctcaccgccgacgtgcacggcgtggtcggccagacgtaccgctccgactacgtca 916
| | ||| ||||||||||||||||||| | |||||||| |||||| ||||||||||||
Sbjct: 800 actccatcagcgccgacgtgcacggcgtgctgggccagacctaccgccccgactacgtca 859
>ref|NT_107198.1| Oryza sativa (japonica cultivar-group)
Length = 632744
Score = 109 bits (55), Expect = 4e-021
Identities = 103/119 (86%)
Strand = Plus / Plus
Query: 366 cgacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgccgggacgc 425
||||||||| ||| ||||||||||||||||| ||| |||||||| ||| ||||||
Sbjct: 20519 cgacccgcggttcgtcggcggcgacggcaacaagttcctgttccacgggcgcaaggacgc 20578
Query: 426 cgacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcggcaagc 484
|||||||||| ||||||||||| | |||| ||||||||||||||||||||||||||||
Sbjct: 20579 cgacttctgcctgctctccgacgccaacctgcacatcaacgcgcacttcatcggcaagc 20637
Score = 103 bits (52), Expect = 2e-019
Identities = 193/240 (80%)
Strand = Plus / Plus
Query: 677 ccgtgccggcgctgtccgtcacccgcaccagcgcggccaacggcgtgctcgtctcgctcg 736
|||| |||||||| || ||| ||||||| || |||||||||||||| | || ||||
Sbjct: 20827 ccgttccggcgctctcggtcttccgcaccggcccggccaacggcgtggtggtgcgcctcg 20886
Query: 737 acggcaggttcaccatcagggccaacgccgtgcccatcacagaggaggagtccagggtgc 796
||||| ||||| |||| |||||||| |||||| |||| |||||||| || ||| | |
Sbjct: 20887 acggccggttccgcatcgtcgccaacgcggtgcccgtcacggaggaggactcgaggatcc 20946
Query: 797 accggtacggcgtcacggccgacgactgcctcgcgcaccttgacctggccttcaagttcg 856
|| | |||||| |||| ||||||||| ||||||| ||||| | |||| |||||||||
Sbjct: 20947 acggctacggcctcaccgccgacgacagcctcgcccacctcaatgtggcgttcaagttct 21006
Query: 857 gcgcgctcaccgccgacgtgcacggcgtggtcggccagacgtaccgctccgactacgtca 916
| | ||| ||||||||||||||||||| | |||||||| |||||| ||||||||||||
Sbjct: 21007 actccatcagcgccgacgtgcacggcgtgctgggccagacctaccgccccgactacgtca 21066
>emb|AL662947.3|OSJN00148 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0073L04,
complete sequence
Length = 143301
Score = 109 bits (55), Expect = 4e-021
Identities = 103/119 (86%)
Strand = Plus / Plus
Query: 366 cgacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgccgggacgc 425
||||||||| ||| ||||||||||||||||| ||| |||||||| ||| ||||||
Sbjct: 20519 cgacccgcggttcgtcggcggcgacggcaacaagttcctgttccacgggcgcaaggacgc 20578
Query: 426 cgacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcggcaagc 484
|||||||||| ||||||||||| | |||| ||||||||||||||||||||||||||||
Sbjct: 20579 cgacttctgcctgctctccgacgccaacctgcacatcaacgcgcacttcatcggcaagc 20637
Score = 103 bits (52), Expect = 2e-019
Identities = 193/240 (80%)
Strand = Plus / Plus
Query: 677 ccgtgccggcgctgtccgtcacccgcaccagcgcggccaacggcgtgctcgtctcgctcg 736
|||| |||||||| || ||| ||||||| || |||||||||||||| | || ||||
Sbjct: 20827 ccgttccggcgctctcggtcttccgcaccggcccggccaacggcgtggtggtgcgcctcg 20886
Query: 737 acggcaggttcaccatcagggccaacgccgtgcccatcacagaggaggagtccagggtgc 796
||||| ||||| |||| |||||||| |||||| |||| |||||||| || ||| | |
Sbjct: 20887 acggccggttccgcatcgtcgccaacgcggtgcccgtcacggaggaggactcgaggatcc 20946
Query: 797 accggtacggcgtcacggccgacgactgcctcgcgcaccttgacctggccttcaagttcg 856
|| | |||||| |||| ||||||||| ||||||| ||||| | |||| |||||||||
Sbjct: 20947 acggctacggcctcaccgccgacgacagcctcgcccacctcaatgtggcgttcaagttct 21006
Query: 857 gcgcgctcaccgccgacgtgcacggcgtggtcggccagacgtaccgctccgactacgtca 916
| | ||| ||||||||||||||||||| | |||||||| |||||| ||||||||||||
Sbjct: 21007 actccatcagcgccgacgtgcacggcgtgctgggccagacctaccgccccgactacgtca 21066
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 109 bits (55), Expect = 4e-021
Identities = 103/119 (86%)
Strand = Plus / Plus
Query: 366 cgacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgccgggacgc 425
||||||||| ||| ||||||||||||||||| ||| |||||||| ||| ||||||
Sbjct: 20289886 cgacccgcggttcgtcggcggcgacggcaacaagttcctgttccacgggcgcaaggacgc 20289945
Query: 426 cgacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcggcaagc 484
|||||||||| ||||||||||| | |||| ||||||||||||||||||||||||||||
Sbjct: 20289946 cgacttctgcctgctctccgacgccaacctgcacatcaacgcgcacttcatcggcaagc 20290004
Score = 103 bits (52), Expect = 2e-019
Identities = 193/240 (80%)
Strand = Plus / Plus
Query: 677 ccgtgccggcgctgtccgtcacccgcaccagcgcggccaacggcgtgctcgtctcgctcg 736
|||| |||||||| || ||| ||||||| || |||||||||||||| | || ||||
Sbjct: 20290194 ccgttccggcgctctcggtcttccgcaccggcccggccaacggcgtggtggtgcgcctcg 20290253
Query: 737 acggcaggttcaccatcagggccaacgccgtgcccatcacagaggaggagtccagggtgc 796
||||| ||||| |||| |||||||| |||||| |||| |||||||| || ||| | |
Sbjct: 20290254 acggccggttccgcatcgtcgccaacgcggtgcccgtcacggaggaggactcgaggatcc 20290313
Query: 797 accggtacggcgtcacggccgacgactgcctcgcgcaccttgacctggccttcaagttcg 856
|| | |||||| |||| ||||||||| ||||||| ||||| | |||| |||||||||
Sbjct: 20290314 acggctacggcctcaccgccgacgacagcctcgcccacctcaatgtggcgttcaagttct 20290373
Query: 857 gcgcgctcaccgccgacgtgcacggcgtggtcggccagacgtaccgctccgactacgtca 916
| | ||| ||||||||||||||||||| | |||||||| |||||| ||||||||||||
Sbjct: 20290374 actccatcagcgccgacgtgcacggcgtgctgggccagacctaccgccccgactacgtca 20290433
Score = 46.1 bits (23), Expect = 0.048
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 188 acaaggagaaggagaaggagaag 210
|||||||||||||||||||||||
Sbjct: 34685766 acaaggagaaggagaaggagaag 34685788
>ref|NM_189423.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 975
Score = 107 bits (54), Expect = 2e-020
Identities = 108/126 (85%)
Strand = Plus / Plus
Query: 359 cgtgcggcgacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgcc 418
|||||||||||||||| |||| |||||||||||||||| ||||||||| ||||||
Sbjct: 278 cgtgcggcgacccgcggttcaccggcggcgacggcaacaacttctactttcacggcaaga 337
Query: 419 gggacgccgacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcg 478
|||| |||||||||| | |||||||| |||||||||||||||||| ||||||||||
Sbjct: 338 aggaccacgacttctgcatcgtctccgacgccgacctccacatcaacgcccacttcatcg 397
Query: 479 gcaagc 484
||||||
Sbjct: 398 gcaagc 403
Score = 65.9 bits (33), Expect = 5e-008
Identities = 96/117 (82%)
Strand = Plus / Plus
Query: 802 tacggcgtcacggccgacgactgcctcgcgcaccttgacctggccttcaagttcggcgcg 861
||||||||||| | || ||| ||||||| ||||| ||||| | |||||||||| ||
Sbjct: 718 tacggcgtcaccgaggaggacagcctcgcccacctcgacctcggcttcaagttctacgac 777
Query: 862 ctcaccgccgacgtgcacggcgtggtcggccagacgtaccgctccgactacgtcaac 918
||| ||| ||| || || ||||| |||||||||| |||||||||||||||||||||
Sbjct: 778 ctctccgacgatgtccatggcgtcctcggccagacctaccgctccgactacgtcaac 834
>ref|NM_189425.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 951
Score = 107 bits (54), Expect = 2e-020
Identities = 108/126 (85%)
Strand = Plus / Plus
Query: 359 cgtgcggcgacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgcc 418
||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||
Sbjct: 254 cgtgcggcgaccctcgcttcaccggcggcgacggcaacaacttctacttccacggcaaga 313
Query: 419 gggacgccgacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcg 478
|||| |||||||||| | |||||||| |||||| ||||||||||| ||||||||||
Sbjct: 314 aggaccacgacttctgcatcgtctccgacgccgacctgcacatcaacgcccacttcatcg 373
Query: 479 gcaagc 484
||||||
Sbjct: 374 gcaagc 379
Score = 77.8 bits (39), Expect = 1e-011
Identities = 81/95 (85%)
Strand = Plus / Plus
Query: 824 gcctcgcgcaccttgacctggccttcaagttcggcgcgctcaccgccgacgtgcacggcg 883
||||||| ||||| ||| | | |||||||||| || ||| ||| |||||| |||||||
Sbjct: 716 gcctcgctcacctcgacatcggcttcaagttctacgacctctccgacgacgtccacggcg 775
Query: 884 tggtcggccagacgtaccgctccgactacgtcaac 918
|| |||||||||| |||||||||||||||||||||
Sbjct: 776 tgctcggccagacctaccgctccgactacgtcaac 810
>gb|AACV01009695.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg009695, whole
genome shotgun sequence
Length = 9127
Score = 103 bits (52), Expect = 2e-019
Identities = 193/240 (80%)
Strand = Plus / Plus
Query: 677 ccgtgccggcgctgtccgtcacccgcaccagcgcggccaacggcgtgctcgtctcgctcg 736
|||| |||||||| || ||| ||||||| || |||||||||||||| | || ||||
Sbjct: 1323 ccgttccggcgctctcggtcttccgcaccggcccggccaacggcgtggtggtgcgcctcg 1382
Query: 737 acggcaggttcaccatcagggccaacgccgtgcccatcacagaggaggagtccagggtgc 796
||||| ||||| |||| |||||||| |||||| |||| |||||||| || ||| | |
Sbjct: 1383 acggccggttccgcatcgtcgccaacgcggtgcccgtcacggaggaggactcgaggatcc 1442
Query: 797 accggtacggcgtcacggccgacgactgcctcgcgcaccttgacctggccttcaagttcg 856
|| | |||||| |||| ||||||||| ||||||| ||||| | |||| |||||||||
Sbjct: 1443 acggctacggcctcaccgccgacgacagcctcgcccacctcaatgtggcgttcaagttct 1502
Query: 857 gcgcgctcaccgccgacgtgcacggcgtggtcggccagacgtaccgctccgactacgtca 916
| | ||| ||||||||||||||||||| | |||||||| |||||| ||||||||||||
Sbjct: 1503 actccatcagcgccgacgtgcacggcgtgctgggccagacctaccgccccgactacgtca 1562
Score = 89.7 bits (45), Expect = 4e-015
Identities = 60/65 (92%)
Strand = Plus / Plus
Query: 420 ggacgccgacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcgg 479
|||||||||||||||| ||||||||||| | |||| |||||||||||||||||||||||
Sbjct: 1069 ggacgccgacttctgcctgctctccgacgccaacctgcacatcaacgcgcacttcatcgg 1128
Query: 480 caagc 484
|||||
Sbjct: 1129 caagc 1133
>gb|CH401189.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000026 genomic
scaffold, whole genome shotgun sequence
Length = 11796637
Score = 103 bits (52), Expect = 2e-019
Identities = 193/240 (80%)
Strand = Plus / Plus
Query: 677 ccgtgccggcgctgtccgtcacccgcaccagcgcggccaacggcgtgctcgtctcgctcg 736
|||| |||||||| || ||| ||||||| || |||||||||||||| | || ||||
Sbjct: 10058758 ccgttccggcgctctcggtcttccgcaccggcccggccaacggcgtggtggtgcgcctcg 10058817
Query: 737 acggcaggttcaccatcagggccaacgccgtgcccatcacagaggaggagtccagggtgc 796
||||| ||||| |||| |||||||| |||||| |||| |||||||| || ||| | |
Sbjct: 10058818 acggccggttccgcatcgtcgccaacgcggtgcccgtcacggaggaggactcgaggatcc 10058877
Query: 797 accggtacggcgtcacggccgacgactgcctcgcgcaccttgacctggccttcaagttcg 856
|| | |||||| |||| ||||||||| ||||||| ||||| | |||| |||||||||
Sbjct: 10058878 acggctacggcctcaccgccgacgacagcctcgcccacctcaatgtggcgttcaagttct 10058937
Query: 857 gcgcgctcaccgccgacgtgcacggcgtggtcggccagacgtaccgctccgactacgtca 916
| | ||| ||||||||||||||||||| | |||||||| |||||| ||||||||||||
Sbjct: 10058938 actccatcagcgccgacgtgcacggcgtgctgggccagacctaccgccccgactacgtca 10058997
Score = 89.7 bits (45), Expect = 4e-015
Identities = 60/65 (92%)
Strand = Plus / Plus
Query: 420 ggacgccgacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcgg 479
|||||||||||||||| ||||||||||| | |||| |||||||||||||||||||||||
Sbjct: 10058504 ggacgccgacttctgcctgctctccgacgccaacctgcacatcaacgcgcacttcatcgg 10058563
Query: 480 caagc 484
|||||
Sbjct: 10058564 caagc 10058568
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 103 bits (52), Expect = 2e-019
Identities = 193/240 (80%)
Strand = Plus / Plus
Query: 677 ccgtgccggcgctgtccgtcacccgcaccagcgcggccaacggcgtgctcgtctcgctcg 736
|||| |||||||| || ||| ||||||| || |||||||||||||| | || ||||
Sbjct: 17406120 ccgttccggcgctctcggtcttccgcaccggcccggccaacggcgtggtggtgcgcctcg 17406179
Query: 737 acggcaggttcaccatcagggccaacgccgtgcccatcacagaggaggagtccagggtgc 796
||||| ||||| |||| |||||||| |||||| |||| |||||||| || ||| | |
Sbjct: 17406180 acggccggttccgcatcgtcgccaacgcggtgcccgtcacggaggaggactcgaggatcc 17406239
Query: 797 accggtacggcgtcacggccgacgactgcctcgcgcaccttgacctggccttcaagttcg 856
|| | |||||| |||| ||||||||| ||||||| ||||| | |||| |||||||||
Sbjct: 17406240 acggctacggcctcaccgccgacgacagcctcgcccacctcaatgtggcgttcaagttct 17406299
Query: 857 gcgcgctcaccgccgacgtgcacggcgtggtcggccagacgtaccgctccgactacgtca 916
| | ||| ||||||||||||||||||| | |||||||| |||||| ||||||||||||
Sbjct: 17406300 actccatcagcgccgacgtgcacggcgtgctgggccagacctaccgccccgactacgtca 17406359
Score = 89.7 bits (45), Expect = 4e-015
Identities = 60/65 (92%)
Strand = Plus / Plus
Query: 420 ggacgccgacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcgg 479
|||||||||||||||| ||||||||||| | |||| |||||||||||||||||||||||
Sbjct: 17405866 ggacgccgacttctgcctgctctccgacgccaacctgcacatcaacgcgcacttcatcgg 17405925
Query: 480 caagc 484
|||||
Sbjct: 17405926 caagc 17405930
Score = 46.1 bits (23), Expect = 0.048
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 188 acaaggagaaggagaaggagaag 210
|||||||||||||||||||||||
Sbjct: 31402310 acaaggagaaggagaaggagaag 31402332
>gb|AC077693.19| Oryza sativa chromosome 10 BAC OSJNBa0095C07 genomic sequence, complete
sequence
Length = 187707
Score = 85.7 bits (43), Expect = 6e-014
Identities = 82/95 (86%)
Strand = Plus / Minus
Query: 802 tacggcgtcacggccgacgactgcctcgcgcaccttgacctggccttcaagttcggcgcg 861
||||||||||| | |||||||||||||| ||||| ||||| | ||||||||||| |||
Sbjct: 159770 tacggcgtcaccgacgacgactgcctcgtccacctcgacctcggcttcaagttcgaggcg 159711
Query: 862 ctcaccgccgacgtgcacggcgtggtcggccagac 896
||||||| |||||| || |||||| ||||||||||
Sbjct: 159710 ctcaccgacgacgtccatggcgtgctcggccagac 159676
>gb|AACV01022143.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg022143, whole
genome shotgun sequence
Length = 22978
Score = 85.7 bits (43), Expect = 6e-014
Identities = 82/95 (86%)
Strand = Plus / Plus
Query: 802 tacggcgtcacggccgacgactgcctcgcgcaccttgacctggccttcaagttcggcgcg 861
||||||||||| | |||||||||||||| ||||| ||||| | ||||||||||| |||
Sbjct: 10763 tacggcgtcaccgacgacgactgcctcgtccacctcgacctcggcttcaagttcgaggcg 10822
Query: 862 ctcaccgccgacgtgcacggcgtggtcggccagac 896
||||||| |||||| || |||||| ||||||||||
Sbjct: 10823 ctcaccgacgacgtccatggcgtgctcggccagac 10857
>ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chromosome 10
Length = 4609300
Score = 85.7 bits (43), Expect = 6e-014
Identities = 82/95 (86%)
Strand = Plus / Minus
Query: 802 tacggcgtcacggccgacgactgcctcgcgcaccttgacctggccttcaagttcggcgcg 861
||||||||||| | |||||||||||||| ||||| ||||| | ||||||||||| |||
Sbjct: 4077820 tacggcgtcaccgacgacgactgcctcgtccacctcgacctcggcttcaagttcgaggcg 4077761
Query: 862 ctcaccgccgacgtgcacggcgtggtcggccagac 896
||||||| |||||| || |||||| ||||||||||
Sbjct: 4077760 ctcaccgacgacgtccatggcgtgctcggccagac 4077726
>gb|CH401254.1| Oryza sativa (japonica cultivar-group) chromosome 10 scaffold000091 genomic
scaffold, whole genome shotgun sequence
Length = 10615099
Score = 85.7 bits (43), Expect = 6e-014
Identities = 82/95 (86%)
Strand = Plus / Minus
Query: 802 tacggcgtcacggccgacgactgcctcgcgcaccttgacctggccttcaagttcggcgcg 861
||||||||||| | |||||||||||||| ||||| ||||| | ||||||||||| |||
Sbjct: 10119620 tacggcgtcaccgacgacgactgcctcgtccacctcgacctcggcttcaagttcgaggcg 10119561
Query: 862 ctcaccgccgacgtgcacggcgtggtcggccagac 896
||||||| |||||| || |||||| ||||||||||
Sbjct: 10119560 ctcaccgacgacgtccatggcgtgctcggccagac 10119526
>gb|CM000147.1| Oryza sativa (japonica cultivar-group) chromosome 10, whole genome shotgun
sequence
Length = 21480893
Score = 85.7 bits (43), Expect = 6e-014
Identities = 82/95 (86%)
Strand = Plus / Minus
Query: 802 tacggcgtcacggccgacgactgcctcgcgcaccttgacctggccttcaagttcggcgcg 861
||||||||||| | |||||||||||||| ||||| ||||| | ||||||||||| |||
Sbjct: 20985414 tacggcgtcaccgacgacgactgcctcgtccacctcgacctcggcttcaagttcgaggcg 20985355
Query: 862 ctcaccgccgacgtgcacggcgtggtcggccagac 896
||||||| |||||| || |||||| ||||||||||
Sbjct: 20985354 ctcaccgacgacgtccatggcgtgctcggccagac 20985320
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
sequence
Length = 22685906
Score = 85.7 bits (43), Expect = 6e-014
Identities = 82/95 (86%)
Strand = Plus / Minus
Query: 802 tacggcgtcacggccgacgactgcctcgcgcaccttgacctggccttcaagttcggcgcg 861
||||||||||| | |||||||||||||| ||||| ||||| | ||||||||||| |||
Sbjct: 22154826 tacggcgtcaccgacgacgactgcctcgtccacctcgacctcggcttcaagttcgaggcg 22154767
Query: 862 ctcaccgccgacgtgcacggcgtggtcggccagac 896
||||||| |||||| || |||||| ||||||||||
Sbjct: 22154766 ctcaccgacgacgtccatggcgtgctcggccagac 22154732
>dbj|AB108421.1| Oryza sativa (japonica cultivar-group) transposon, AnacB14, complete
sequence
Length = 7551
Score = 85.7 bits (43), Expect = 6e-014
Identities = 82/95 (86%)
Strand = Plus / Plus
Query: 802 tacggcgtcacggccgacgactgcctcgcgcaccttgacctggccttcaagttcggcgcg 861
||||||||||| | |||||||||||||| ||||| ||||| | ||||||||||| |||
Sbjct: 5353 tacggcgtcaccgacgacgactgcctcgtccacctcgacctcggcttcaagttcgaggcg 5412
Query: 862 ctcaccgccgacgtgcacggcgtggtcggccagac 896
||||||| |||||| || |||||| ||||||||||
Sbjct: 5413 ctcaccgacgacgtccatggcgtgctcggccagac 5447
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
Length = 22698374
Score = 85.7 bits (43), Expect = 6e-014
Identities = 82/95 (86%)
Strand = Plus / Minus
Query: 802 tacggcgtcacggccgacgactgcctcgcgcaccttgacctggccttcaagttcggcgcg 861
||||||||||| | |||||||||||||| ||||| ||||| | ||||||||||| |||
Sbjct: 22166889 tacggcgtcaccgacgacgactgcctcgtccacctcgacctcggcttcaagttcgaggcg 22166830
Query: 862 ctcaccgccgacgtgcacggcgtggtcggccagac 896
||||||| |||||| || |||||| ||||||||||
Sbjct: 22166829 ctcaccgacgacgtccatggcgtgctcggccagac 22166795
>ref|NM_189428.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1026
Score = 79.8 bits (40), Expect = 3e-012
Identities = 103/124 (83%)
Strand = Plus / Plus
Query: 359 cgtgcggcgacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgcc 418
||||||||||||| || |||| ||||| |||||||||| |||||||||||||||||
Sbjct: 323 cgtgcggcgacccacggttcaccggcgccgacggcaacaccttctacttccacggcaaga 382
Query: 419 gggacgccgacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcg 478
||| ||||||||| | |||||||| |||||| ||||||||||| ||||||||||
Sbjct: 383 aggagcaggacttctgcatcgtctccgacgccgacctgcacatcaacgcccacttcatcg 442
Query: 479 gcaa 482
||||
Sbjct: 443 gcaa 446
>dbj|AK062312.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-101-B09, full
insert sequence
Length = 1109
Score = 50.1 bits (25), Expect = 0.003
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 186 gcacaaggagaaggagaaggagaag 210
|||||||||||||||||||||||||
Sbjct: 283 gcacaaggagaaggagaaggagaag 307
>dbj|AK119604.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-117-E11, full
insert sequence
Length = 1753
Score = 50.1 bits (25), Expect = 0.003
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 186 gcacaaggagaaggagaaggagaag 210
|||||||||||||||||||||||||
Sbjct: 836 gcacaaggagaaggagaaggagaag 860
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,018,883
Number of Sequences: 438736
Number of extensions: 2018883
Number of successful extensions: 28664
Number of sequences better than 0.5: 86
Number of HSP's better than 0.5 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 26380
Number of HSP's gapped (non-prelim): 2201
length of query: 1318
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1297
effective length of database: 2,791,206,460
effective search space: 3620194778620
effective search space used: 3620194778620
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)