BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 9232502.2.1
(560 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB683643.1|CB683643 OSJNEf12E14.f OSJNEf Oryza sativa (j... 157 8e-036
dbj|AK099313.1| Oryza sativa (japonica cultivar-group) cDNA... 157 8e-036
gb|AC124143.2| Oryza sativa (japonica cultivar-group) chrom... 157 8e-036
ref|NT_107221.1| Oryza sativa (japonica cultivar-group) 157 8e-036
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 157 8e-036
dbj|AK058836.1| Oryza sativa (japonica cultivar-group) cDNA... 149 2e-033
gb|CB683233.1|CB683233 OSJNEf11F13.r OSJNEf Oryza sativa (j... 133 1e-028
gb|AACV01012716.1| Oryza sativa (japonica cultivar-group) c... 125 3e-026
gb|CH401206.1| Oryza sativa (japonica cultivar-group) chrom... 125 3e-026
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 125 3e-026
gb|AU223436.1|AU223436 AU223436 Rice shoot Oryza sativa (ja... 115 3e-023
gb|AU222714.1|AU222714 AU222714 Rice shoot Oryza sativa (ja... 111 4e-022
gb|AU172457.1|AU172457 AU172457 Rice panicle at flowering s... 103 1e-019
gb|D41853.1|D41853 RICS4691A Rice shoot Oryza sativa (japon... 70 1e-009
gb|CB656037.1|CB656037 OSJNEc09O24.f OSJNEc Oryza sativa (j... 46 0.020
gb|CB685566.1|CB685566 OSJNEf16B11.f OSJNEf Oryza sativa (j... 46 0.020
dbj|AK108901.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.020
dbj|AP005700.3| Oryza sativa (japonica cultivar-group) geno... 46 0.020
gb|AACV01019713.1| Oryza sativa (japonica cultivar-group) c... 46 0.020
ref|NT_107081.1| Oryza sativa (japonica cultivar-group) 46 0.020
dbj|AP005313.3| Oryza sativa (japonica cultivar-group) geno... 46 0.020
gb|CH401242.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.020
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.020
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 46 0.020
emb|AL831806.5|CNS08CAJ Oryza sativa chromosome 12, . BAC O... 42 0.31
gb|AC051633.7| Oryza sativa chromosome 10 BAC OSJNBb0015I11... 42 0.31
dbj|AP003818.2| Oryza sativa (japonica cultivar-group) geno... 42 0.31
emb|AL954160.5|CNS08CCY Oryza sativa chromosome 12, . BAC O... 42 0.31
dbj|AP003813.4| Oryza sativa (japonica cultivar-group) geno... 42 0.31
dbj|AP005516.5| Oryza sativa (japonica cultivar-group) geno... 42 0.31
ref|NT_079839.2| Oryza sativa (japonica cultivar-group) 42 0.31
ref|NT_107078.1| Oryza sativa (japonica cultivar-group) 42 0.31
dbj|AP005558.3| Oryza sativa (japonica cultivar-group) geno... 42 0.31
gb|AACV01015490.1| Oryza sativa (japonica cultivar-group) c... 42 0.31
gb|AACV01017047.1| Oryza sativa (japonica cultivar-group) c... 42 0.31
gb|AACV01022023.1| Oryza sativa (japonica cultivar-group) c... 42 0.31
gb|AACV01024261.1| Oryza sativa (japonica cultivar-group) c... 42 0.31
ref|NM_197588.1| Oryza sativa (japonica cultivar-group) hyp... 42 0.31
ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chr... 42 0.31
ref|XM_479604.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.31
ref|NT_079879.2| Oryza sativa (japonica cultivar-group) 42 0.31
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 42 0.31
dbj|AP006171.2| Oryza sativa (japonica cultivar-group) geno... 42 0.31
gb|CH401273.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.31
gb|CH401254.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.31
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.31
gb|CH401221.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.31
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.31
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.31
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.31
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 42 0.31
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 42 0.31
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 42 0.31
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.31
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 42 0.31
>gb|CB683643.1|CB683643 OSJNEf12E14.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf12E14 5', mRNA sequence
Length = 784
Score = 157 bits (79), Expect = 8e-036
Identities = 274/339 (80%)
Strand = Plus / Minus
Query: 2 gtagatggcgagcgggaagtccttgctgacggggctgcccagcagcatccagttcacccc 61
||||| |||||| |||||||||||||||||| | || |||||| |||||| || ||
Sbjct: 588 gtagacggcgagggggaagtccttgctgacgacggtggagagcagcgcccagttgacgcc 529
Query: 62 cgtggacacgttgacgttgttccccgaccgcttgatgtcgtacctgtagggcccgtcgtg 121
||||| | |||||||||||| |||| ||||||| | |||| |||| || ||||||
Sbjct: 528 ggtggagatgttgacgttgttgttcgacggcttgatcttgtacttgtacgggccgtcggc 469
Query: 122 gccggacccctgcgtgttgaccttgccgctgagggtgccgagcatggacaggctgtagaa 181
||||||| |||||||||| || ||||| ||||||| |||||||| |||||||||||
Sbjct: 468 gccggacgcctgcgtgttcacggggccgccgagggtggtgagcatggcgaggctgtagaa 409
Query: 182 ccggggcagcacgcagtagagcaccatctggatctgctcctgcggcgacagcccgttcag 241
||| || |||||||||||||||| || ||||||||| ||||||| ||||||| ||| ||
Sbjct: 408 ccgcgggagcacgcagtagagcatcagctggatctggtcctgcgacgacagcgagttgag 349
Query: 242 cacgcccgccttcatcttgtcgaaggcggcgttggtgggcgccatgatggtcagcccgtt 301
| ||||| ||| | | |||| ||||||| |||||||| | ||||||||||||||
Sbjct: 348 cgtgcccggcttgagcgccgcgaacgcggcgtccgtgggcgcgaacatggtcagcccgtt 289
Query: 302 gtagctgtccgtcagctgcgcgttgatctgcgtgtccac 340
|||||||||| ||||||| ||||||||| ||||||||
Sbjct: 288 gtagctgtccatcagctggctgttgatctgggtgtccac 250
>dbj|AK099313.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023144L21, full
insert sequence
Length = 1147
Score = 157 bits (79), Expect = 8e-036
Identities = 274/339 (80%)
Strand = Plus / Minus
Query: 2 gtagatggcgagcgggaagtccttgctgacggggctgcccagcagcatccagttcacccc 61
||||| |||||| |||||||||||||||||| | || |||||| |||||| || ||
Sbjct: 622 gtagacggcgagggggaagtccttgctgacgacggtggagagcagcgcccagttgacgcc 563
Query: 62 cgtggacacgttgacgttgttccccgaccgcttgatgtcgtacctgtagggcccgtcgtg 121
||||| | |||||||||||| |||| ||||||| | |||| |||| || ||||||
Sbjct: 562 ggtggagatgttgacgttgttgttcgacggcttgatcttgtacttgtacgggccgtcggc 503
Query: 122 gccggacccctgcgtgttgaccttgccgctgagggtgccgagcatggacaggctgtagaa 181
||||||| |||||||||| || ||||| ||||||| |||||||| |||||||||||
Sbjct: 502 gccggacgcctgcgtgttcacggggccgccgagggtggtgagcatggcgaggctgtagaa 443
Query: 182 ccggggcagcacgcagtagagcaccatctggatctgctcctgcggcgacagcccgttcag 241
||| || |||||||||||||||| || ||||||||| ||||||| ||||||| ||| ||
Sbjct: 442 ccgcgggagcacgcagtagagcatcagctggatctggtcctgcgacgacagcgagttgag 383
Query: 242 cacgcccgccttcatcttgtcgaaggcggcgttggtgggcgccatgatggtcagcccgtt 301
| ||||| ||| | | |||| ||||||| |||||||| | ||||||||||||||
Sbjct: 382 cgtgcccggcttgagcgccgcgaacgcggcgtccgtgggcgcgaacatggtcagcccgtt 323
Query: 302 gtagctgtccgtcagctgcgcgttgatctgcgtgtccac 340
|||||||||| ||||||| ||||||||| ||||||||
Sbjct: 322 gtagctgtccatcagctggctgttgatctgggtgtccac 284
>gb|AC124143.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
OSJNBb0053D02, complete sequence
Length = 157106
Score = 157 bits (79), Expect = 8e-036
Identities = 274/339 (80%)
Strand = Plus / Minus
Query: 2 gtagatggcgagcgggaagtccttgctgacggggctgcccagcagcatccagttcacccc 61
||||| |||||| |||||||||||||||||| | || |||||| |||||| || ||
Sbjct: 62476 gtagacggcgagggggaagtccttgctgacgacggtggagagcagcgcccagttgacgcc 62417
Query: 62 cgtggacacgttgacgttgttccccgaccgcttgatgtcgtacctgtagggcccgtcgtg 121
||||| | |||||||||||| |||| ||||||| | |||| |||| || ||||||
Sbjct: 62416 ggtggagatgttgacgttgttgttcgacggcttgatcttgtacttgtacgggccgtcggc 62357
Query: 122 gccggacccctgcgtgttgaccttgccgctgagggtgccgagcatggacaggctgtagaa 181
||||||| |||||||||| || ||||| ||||||| |||||||| |||||||||||
Sbjct: 62356 gccggacgcctgcgtgttcacggggccgccgagggtggtgagcatggcgaggctgtagaa 62297
Query: 182 ccggggcagcacgcagtagagcaccatctggatctgctcctgcggcgacagcccgttcag 241
||| || |||||||||||||||| || ||||||||| ||||||| ||||||| ||| ||
Sbjct: 62296 ccgcgggagcacgcagtagagcatcagctggatctggtcctgcgacgacagcgagttgag 62237
Query: 242 cacgcccgccttcatcttgtcgaaggcggcgttggtgggcgccatgatggtcagcccgtt 301
| ||||| ||| | | |||| ||||||| |||||||| | ||||||||||||||
Sbjct: 62236 cgtgcccggcttgagcgccgcgaacgcggcgtccgtgggcgcgaacatggtcagcccgtt 62177
Query: 302 gtagctgtccgtcagctgcgcgttgatctgcgtgtccac 340
|||||||||| ||||||| ||||||||| ||||||||
Sbjct: 62176 gtagctgtccatcagctggctgttgatctgggtgtccac 62138
>ref|NT_107221.1| Oryza sativa (japonica cultivar-group)
Length = 824362
Score = 157 bits (79), Expect = 8e-036
Identities = 274/339 (80%)
Strand = Plus / Minus
Query: 2 gtagatggcgagcgggaagtccttgctgacggggctgcccagcagcatccagttcacccc 61
||||| |||||| |||||||||||||||||| | || |||||| |||||| || ||
Sbjct: 428189 gtagacggcgagggggaagtccttgctgacgacggtggagagcagcgcccagttgacgcc 428130
Query: 62 cgtggacacgttgacgttgttccccgaccgcttgatgtcgtacctgtagggcccgtcgtg 121
||||| | |||||||||||| |||| ||||||| | |||| |||| || ||||||
Sbjct: 428129 ggtggagatgttgacgttgttgttcgacggcttgatcttgtacttgtacgggccgtcggc 428070
Query: 122 gccggacccctgcgtgttgaccttgccgctgagggtgccgagcatggacaggctgtagaa 181
||||||| |||||||||| || ||||| ||||||| |||||||| |||||||||||
Sbjct: 428069 gccggacgcctgcgtgttcacggggccgccgagggtggtgagcatggcgaggctgtagaa 428010
Query: 182 ccggggcagcacgcagtagagcaccatctggatctgctcctgcggcgacagcccgttcag 241
||| || |||||||||||||||| || ||||||||| ||||||| ||||||| ||| ||
Sbjct: 428009 ccgcgggagcacgcagtagagcatcagctggatctggtcctgcgacgacagcgagttgag 427950
Query: 242 cacgcccgccttcatcttgtcgaaggcggcgttggtgggcgccatgatggtcagcccgtt 301
| ||||| ||| | | |||| ||||||| |||||||| | ||||||||||||||
Sbjct: 427949 cgtgcccggcttgagcgccgcgaacgcggcgtccgtgggcgcgaacatggtcagcccgtt 427890
Query: 302 gtagctgtccgtcagctgcgcgttgatctgcgtgtccac 340
|||||||||| ||||||| ||||||||| ||||||||
Sbjct: 427889 gtagctgtccatcagctggctgttgatctgggtgtccac 427851
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 157 bits (79), Expect = 8e-036
Identities = 274/339 (80%)
Strand = Plus / Minus
Query: 2 gtagatggcgagcgggaagtccttgctgacggggctgcccagcagcatccagttcacccc 61
||||| |||||| |||||||||||||||||| | || |||||| |||||| || ||
Sbjct: 27832059 gtagacggcgagggggaagtccttgctgacgacggtggagagcagcgcccagttgacgcc 27832000
Query: 62 cgtggacacgttgacgttgttccccgaccgcttgatgtcgtacctgtagggcccgtcgtg 121
||||| | |||||||||||| |||| ||||||| | |||| |||| || ||||||
Sbjct: 27831999 ggtggagatgttgacgttgttgttcgacggcttgatcttgtacttgtacgggccgtcggc 27831940
Query: 122 gccggacccctgcgtgttgaccttgccgctgagggtgccgagcatggacaggctgtagaa 181
||||||| |||||||||| || ||||| ||||||| |||||||| |||||||||||
Sbjct: 27831939 gccggacgcctgcgtgttcacggggccgccgagggtggtgagcatggcgaggctgtagaa 27831880
Query: 182 ccggggcagcacgcagtagagcaccatctggatctgctcctgcggcgacagcccgttcag 241
||| || |||||||||||||||| || ||||||||| ||||||| ||||||| ||| ||
Sbjct: 27831879 ccgcgggagcacgcagtagagcatcagctggatctggtcctgcgacgacagcgagttgag 27831820
Query: 242 cacgcccgccttcatcttgtcgaaggcggcgttggtgggcgccatgatggtcagcccgtt 301
| ||||| ||| | | |||| ||||||| |||||||| | ||||||||||||||
Sbjct: 27831819 cgtgcccggcttgagcgccgcgaacgcggcgtccgtgggcgcgaacatggtcagcccgtt 27831760
Query: 302 gtagctgtccgtcagctgcgcgttgatctgcgtgtccac 340
|||||||||| ||||||| ||||||||| ||||||||
Sbjct: 27831759 gtagctgtccatcagctggctgttgatctgggtgtccac 27831721
>dbj|AK058836.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-004-C09, full
insert sequence
Length = 1102
Score = 149 bits (75), Expect = 2e-033
Identities = 273/339 (80%)
Strand = Plus / Minus
Query: 2 gtagatggcgagcgggaagtccttgctgacggggctgcccagcagcatccagttcacccc 61
||||| |||||| |||||||||||||||||| | || |||||| |||||| || ||
Sbjct: 628 gtagacggcgagggggaagtccttgctgacgacggtggagagcagcgcccagttgacgcc 569
Query: 62 cgtggacacgttgacgttgttccccgaccgcttgatgtcgtacctgtagggcccgtcgtg 121
||||| | |||||||||| | |||| ||||||| | |||| |||| || ||||||
Sbjct: 568 ggtggagatgttgacgttgctgttcgacggcttgatcttgtacttgtacgggccgtcggc 509
Query: 122 gccggacccctgcgtgttgaccttgccgctgagggtgccgagcatggacaggctgtagaa 181
||||||| |||||||||| || ||||| ||||||| |||||||| |||||||||||
Sbjct: 508 gccggacgcctgcgtgttcacggggccgccgagggtggtgagcatggcgaggctgtagaa 449
Query: 182 ccggggcagcacgcagtagagcaccatctggatctgctcctgcggcgacagcccgttcag 241
||| || |||||||||||||||| || ||||||||| ||||||| ||||||| ||| ||
Sbjct: 448 ccgcgggagcacgcagtagagcatcagctggatctggtcctgcgacgacagcgagttgag 389
Query: 242 cacgcccgccttcatcttgtcgaaggcggcgttggtgggcgccatgatggtcagcccgtt 301
| ||||| ||| | | |||| ||||||| |||||||| | ||||||||||||||
Sbjct: 388 cgtgcccggcttgagcgccgcgaacgcggcgtccgtgggcgcgaacatggtcagcccgtt 329
Query: 302 gtagctgtccgtcagctgcgcgttgatctgcgtgtccac 340
|||||||||| ||||||| ||||||||| ||||||||
Sbjct: 328 gtagctgtccatcagctggctgttgatctgggtgtccac 290
>gb|CB683233.1|CB683233 OSJNEf11F13.r OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf11F13 3', mRNA sequence
Length = 823
Score = 133 bits (67), Expect = 1e-028
Identities = 247/307 (80%)
Strand = Plus / Plus
Query: 2 gtagatggcgagcgggaagtccttgctgacggggctgcccagcagcatccagttcacccc 61
||||| |||||| |||||||||||||||||| | || |||||| |||||| || ||
Sbjct: 504 gtagacggcgagggggaagtccttgctgacgacggtggagagcagcgcccagttgacgcc 563
Query: 62 cgtggacacgttgacgttgttccccgaccgcttgatgtcgtacctgtagggcccgtcgtg 121
||||| | |||||||||||| |||| ||||||| | |||| |||| || ||||||
Sbjct: 564 ggtggagatgttgacgttgttgttcgacggcttgatcttgtacttgtacgggccgtcggc 623
Query: 122 gccggacccctgcgtgttgaccttgccgctgagggtgccgagcatggacaggctgtagaa 181
||||||| |||||||||| || ||||| ||||||| |||||||| |||||||||||
Sbjct: 624 gccggacgcctgcgtgttcacggggccgccgagggtggtgagcatggcgaggctgtagaa 683
Query: 182 ccggggcagcacgcagtagagcaccatctggatctgctcctgcggcgacagcccgttcag 241
||| || |||||||||||||||| || ||||||||| ||||||| ||||||| ||| ||
Sbjct: 684 ccgcgggagcacgcagtagagcatcagctggatctggtcctgcgacgacagcgagttgag 743
Query: 242 cacgcccgccttcatcttgtcgaaggcggcgttggtgggcgccatgatggtcagcccgtt 301
| ||||| ||| | | |||| ||||||| |||||||| | ||||||||||||||
Sbjct: 744 cgtgcccggcttgagcgccgcgaacgcggcgtccgtgggcgcgaacatggtcagcccgtt 803
Query: 302 gtagctg 308
|||||||
Sbjct: 804 gtagctg 810
>gb|AACV01012716.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg012716, whole
genome shotgun sequence
Length = 16701
Score = 125 bits (63), Expect = 3e-026
Identities = 250/311 (80%), Gaps = 1/311 (0%)
Strand = Plus / Minus
Query: 2 gtagatggcgagcgggaagtccttgctgacggggctgcccagcagcatccagttcacccc 61
||||| |||||| |||||||||||||||||| | || |||||| |||||| || ||
Sbjct: 1144 gtagacggcgagggggaagtccttgctgacgacggtggagagcagcgcccagttgacgcc 1085
Query: 62 cgtggacacgttgacgttgttccccgaccgcttgatgtcgtacctgtagggcccgtcgtg 121
||||| | |||||||||||| |||| ||||||| | |||| |||| || ||||||
Sbjct: 1084 ggtggagatgttgacgttgttgttcgacggcttgatcttgtacttgtacgggccgtcggc 1025
Query: 122 gccggacccctgcgtgttgaccttgccgctgagggtgccgagcatggacaggctgtagaa 181
||||||| |||||||||| || ||||| ||||||| |||||||| |||||||||||
Sbjct: 1024 gccggacgcctgcgtgttcacggggccgccgagggtggtgagcatggcgaggctgtagaa 965
Query: 182 ccggggcagcacgcagtagagcaccatct-ggatctgctcctgcggcgacagcccgttca 240
||| || |||||||||||||||| || || ||||||| ||||||| ||||||| ||| |
Sbjct: 964 ccgcgggagcacgcagtagagcatcagctgggatctggtcctgcgacgacagcgagttga 905
Query: 241 gcacgcccgccttcatcttgtcgaaggcggcgttggtgggcgccatgatggtcagcccgt 300
|| ||||| ||| | | |||| ||||||| |||||||| | |||||||||||||
Sbjct: 904 gcgtgcccggcttgagcgccgcgaacgcggcgtccgtgggcgcgaacatggtcagcccgt 845
Query: 301 tgtagctgtcc 311
|||||||||||
Sbjct: 844 tgtagctgtcc 834
>gb|CH401206.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000043 genomic
scaffold, whole genome shotgun sequence
Length = 11965857
Score = 125 bits (63), Expect = 3e-026
Identities = 250/311 (80%), Gaps = 1/311 (0%)
Strand = Plus / Minus
Query: 2 gtagatggcgagcgggaagtccttgctgacggggctgcccagcagcatccagttcacccc 61
||||| |||||| |||||||||||||||||| | || |||||| |||||| || ||
Sbjct: 10282647 gtagacggcgagggggaagtccttgctgacgacggtggagagcagcgcccagttgacgcc 10282588
Query: 62 cgtggacacgttgacgttgttccccgaccgcttgatgtcgtacctgtagggcccgtcgtg 121
||||| | |||||||||||| |||| ||||||| | |||| |||| || ||||||
Sbjct: 10282587 ggtggagatgttgacgttgttgttcgacggcttgatcttgtacttgtacgggccgtcggc 10282528
Query: 122 gccggacccctgcgtgttgaccttgccgctgagggtgccgagcatggacaggctgtagaa 181
||||||| |||||||||| || ||||| ||||||| |||||||| |||||||||||
Sbjct: 10282527 gccggacgcctgcgtgttcacggggccgccgagggtggtgagcatggcgaggctgtagaa 10282468
Query: 182 ccggggcagcacgcagtagagcaccatct-ggatctgctcctgcggcgacagcccgttca 240
||| || |||||||||||||||| || || ||||||| ||||||| ||||||| ||| |
Sbjct: 10282467 ccgcgggagcacgcagtagagcatcagctgggatctggtcctgcgacgacagcgagttga 10282408
Query: 241 gcacgcccgccttcatcttgtcgaaggcggcgttggtgggcgccatgatggtcagcccgt 300
|| ||||| ||| | | |||| ||||||| |||||||| | |||||||||||||
Sbjct: 10282407 gcgtgcccggcttgagcgccgcgaacgcggcgtccgtgggcgcgaacatggtcagcccgt 10282348
Query: 301 tgtagctgtcc 311
|||||||||||
Sbjct: 10282347 tgtagctgtcc 10282337
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 125 bits (63), Expect = 3e-026
Identities = 250/311 (80%), Gaps = 1/311 (0%)
Strand = Plus / Minus
Query: 2 gtagatggcgagcgggaagtccttgctgacggggctgcccagcagcatccagttcacccc 61
||||| |||||| |||||||||||||||||| | || |||||| |||||| || ||
Sbjct: 27582960 gtagacggcgagggggaagtccttgctgacgacggtggagagcagcgcccagttgacgcc 27582901
Query: 62 cgtggacacgttgacgttgttccccgaccgcttgatgtcgtacctgtagggcccgtcgtg 121
||||| | |||||||||||| |||| ||||||| | |||| |||| || ||||||
Sbjct: 27582900 ggtggagatgttgacgttgttgttcgacggcttgatcttgtacttgtacgggccgtcggc 27582841
Query: 122 gccggacccctgcgtgttgaccttgccgctgagggtgccgagcatggacaggctgtagaa 181
||||||| |||||||||| || ||||| ||||||| |||||||| |||||||||||
Sbjct: 27582840 gccggacgcctgcgtgttcacggggccgccgagggtggtgagcatggcgaggctgtagaa 27582781
Query: 182 ccggggcagcacgcagtagagcaccatct-ggatctgctcctgcggcgacagcccgttca 240
||| || |||||||||||||||| || || ||||||| ||||||| ||||||| ||| |
Sbjct: 27582780 ccgcgggagcacgcagtagagcatcagctgggatctggtcctgcgacgacagcgagttga 27582721
Query: 241 gcacgcccgccttcatcttgtcgaaggcggcgttggtgggcgccatgatggtcagcccgt 300
|| ||||| ||| | | |||| ||||||| |||||||| | |||||||||||||
Sbjct: 27582720 gcgtgcccggcttgagcgccgcgaacgcggcgtccgtgggcgcgaacatggtcagcccgt 27582661
Query: 301 tgtagctgtcc 311
|||||||||||
Sbjct: 27582660 tgtagctgtcc 27582650
>gb|AU223436.1|AU223436 AU223436 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S6349, mRNA sequence
Length = 380
Score = 115 bits (58), Expect = 3e-023
Identities = 217/271 (80%)
Strand = Plus / Minus
Query: 49 tccagttcacccccgtggacacgttgacgttgttccccgaccgcttgatgtcgtacctgt 108
||||||| || || ||||| | |||||||||||| |||| ||||||| | |||| |||
Sbjct: 279 tccagttgacgccggtggagatgttgacgttgttgttcgacggcttgatcttgtacttgt 220
Query: 109 agggcccgtcgtggccggacccctgcgtgttgaccttgccgctgagggtgccgagcatgg 168
| || |||||| ||||||| |||||||||| || ||||| ||||||| ||||||||
Sbjct: 219 acgggccgtcggcgccggacgcctgcgtgttcacggggccgccgagggtggtgagcatgg 160
Query: 169 acaggctgtagaaccggggcagcacgcagtagagcaccatctggatctgctcctgcggcg 228
|||||||| ||||| || |||||||||||||||| || ||||||||| |||||| ||
Sbjct: 159 cgaggctgtanaaccgcgggagcacgcagtagagcatcagctggatctggtcctgcaacg 100
Query: 229 acagcccgttcagcacgcccgccttcatcttgtcgaaggcggcgttggtgggcgccatga 288
||||| ||| ||| ||||| ||| | | |||| ||||||| |||||||| | |
Sbjct: 99 acagcgagttgagcgtgcccggcttgagcgccgcgaacgcggcgtccgtgggcgcnaaca 40
Query: 289 tggtcagcccgttgtagctgtccgtcagctg 319
|||||||||||||||| |||||| |||||||
Sbjct: 39 tggtcagcccgttgtanctgtccatcagctg 9
>gb|AU222714.1|AU222714 AU222714 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S0575, mRNA sequence
Length = 479
Score = 111 bits (56), Expect = 4e-022
Identities = 160/195 (82%)
Strand = Plus / Minus
Query: 146 gccgctgagggtgccgagcatggacaggctgtagaaccggggcagcacgcagtagagcac 205
||||| ||||||| |||||||| |||||||||||||| || ||||||||||||||||
Sbjct: 464 gccgccgagggtggtgagcatggcgaggctgtagaaccgcgggagcacgcagtagagcat 405
Query: 206 catctggatctgctcctgcggcgacagcccgttcagcacgcccgccttcatcttgtcgaa 265
|| ||||||||| ||||||| ||||||| ||| ||| ||||| ||| | | ||||
Sbjct: 404 cagctggatctggtcctgcgacgacagcgagttgagcgtgcccggcttgagcgccgcgaa 345
Query: 266 ggcggcgttggtgggcgccatgatggtcagcccgttgtagctgtccgtcagctgcgcgtt 325
|||||| |||||||| | |||||||||||||||||||||||| ||||||| |||
Sbjct: 344 cncggcgtccgtgggcgcgaacatggtcagcccgttgtagctgtccatcagctggctgtt 285
Query: 326 gatctgcgtgtccac 340
|||||| ||||||||
Sbjct: 284 gatctgggtgtccac 270
>gb|AU172457.1|AU172457 AU172457 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E1033, mRNA sequence
Length = 446
Score = 103 bits (52), Expect = 1e-019
Identities = 140/170 (82%)
Strand = Plus / Minus
Query: 171 aggctgtagaaccggggcagcacgcagtagagcaccatctggatctgctcctgcggcgac 230
||||||||||||| || |||||||||||||||| || ||||||||| ||||||| ||||
Sbjct: 440 aggctgtagaaccncgggagcacgcagtagagcatcagctggatctggtcctgcgacgac 381
Query: 231 agcccgttcagcacgcccgccttcatcttgtcgaaggcggcgttggtgggcgccatgatg 290
||| ||| ||| ||||| ||| | || |||| ||||||| |||||||| | |||
Sbjct: 380 agcgagttgagcgtgcccggcttgagctccgcgaacgcggcgtccgtgggcgcgaacatg 321
Query: 291 gtcagcccgttgtagctgtccgtcagctgcgcgttgatctgcgtgtccac 340
|||||||||||||| |||||| ||||||| ||||||||| ||||||||
Sbjct: 320 gtcagcccgttgtanctgtccatcagctggctgttgatctgggtgtccac 271
>gb|D41853.1|D41853 RICS4691A Rice shoot Oryza sativa (japonica cultivar-group) cDNA,
mRNA sequence
Length = 387
Score = 69.9 bits (35), Expect = 1e-009
Identities = 53/59 (89%)
Strand = Plus / Minus
Query: 175 tgtagaaccggggcagcacgcagtagagcaccatctggatctgctcctgcggcgacagc 233
|||||||||| || |||||||||||||||| || ||||||||| ||||||| |||||||
Sbjct: 346 tgtagaaccgcgggagcacgcagtagagcatcagctggatctggtcctgcgacgacagc 288
Score = 61.9 bits (31), Expect = 3e-007
Identities = 67/79 (84%)
Strand = Plus / Minus
Query: 262 cgaaggcggcgttggtgggcgccatgatggtcagcccgttgtagctgtccgtcagctgcg 321
|||| ||||||| |||||||| | |||||||||||||||||| ||||| |||||||
Sbjct: 259 cgaacgcggcgtccgtgggcgcgaacatggtcagcccgttgtagatgtccatcagctggc 200
Query: 322 cgttgatctgcgtgtccac 340
||||||||| ||||||||
Sbjct: 199 tgttgatctgggtgtccac 181
>gb|CB656037.1|CB656037 OSJNEc09O24.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc09O24 5', mRNA sequence
Length = 784
Score = 46.1 bits (23), Expect = 0.020
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 437 gcccgagcccgacgacgacgccg 459
|||||||||||||||||||||||
Sbjct: 161 gcccgagcccgacgacgacgccg 183
>gb|CB685566.1|CB685566 OSJNEf16B11.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf16B11 5', mRNA sequence
Length = 775
Score = 46.1 bits (23), Expect = 0.020
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 2 gtagatggcgagcgggaagtccttgctgacg 32
||||| |||||| ||||||||||||||||||
Sbjct: 88 gtagacggcgagggggaagtccttgctgacg 58
>dbj|AK108901.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-152-F06, full
insert sequence
Length = 1265
Score = 46.1 bits (23), Expect = 0.020
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 437 gcccgagcccgacgacgacgccg 459
|||||||||||||||||||||||
Sbjct: 217 gcccgagcccgacgacgacgccg 239
>dbj|AP005700.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
clone:OSJNBb0085I16
Length = 141701
Score = 46.1 bits (23), Expect = 0.020
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 437 gcccgagcccgacgacgacgccg 459
|||||||||||||||||||||||
Sbjct: 136407 gcccgagcccgacgacgacgccg 136385
>gb|AACV01019713.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg019713, whole
genome shotgun sequence
Length = 47084
Score = 46.1 bits (23), Expect = 0.020
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 437 gcccgagcccgacgacgacgccg 459
|||||||||||||||||||||||
Sbjct: 28050 gcccgagcccgacgacgacgccg 28072
>ref|NT_107081.1| Oryza sativa (japonica cultivar-group)
Length = 2169725
Score = 46.1 bits (23), Expect = 0.020
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 437 gcccgagcccgacgacgacgccg 459
|||||||||||||||||||||||
Sbjct: 1603302 gcccgagcccgacgacgacgccg 1603280
>dbj|AP005313.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
clone:P0512H04
Length = 151049
Score = 46.1 bits (23), Expect = 0.020
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 437 gcccgagcccgacgacgacgccg 459
|||||||||||||||||||||||
Sbjct: 23512 gcccgagcccgacgacgacgccg 23490
>gb|CH401242.1| Oryza sativa (japonica cultivar-group) chromosome 9 scaffold000079
genomic scaffold, whole genome shotgun sequence
Length = 12069826
Score = 46.1 bits (23), Expect = 0.020
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 437 gcccgagcccgacgacgacgccg 459
|||||||||||||||||||||||
Sbjct: 266583 gcccgagcccgacgacgacgccg 266561
>gb|CM000146.1| Oryza sativa (japonica cultivar-group) chromosome 9, whole genome shotgun
sequence
Length = 21543637
Score = 46.1 bits (23), Expect = 0.020
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 437 gcccgagcccgacgacgacgccg 459
|||||||||||||||||||||||
Sbjct: 9740394 gcccgagcccgacgacgacgccg 9740372
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
sequence
Length = 22696651
Score = 46.1 bits (23), Expect = 0.020
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 437 gcccgagcccgacgacgacgccg 459
|||||||||||||||||||||||
Sbjct: 10799789 gcccgagcccgacgacgacgccg 10799767
Score = 42.1 bits (21), Expect = 0.31
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 417 gccgcgtccgccgcgcccgcgcccg 441
|||||| ||||||||||||||||||
Sbjct: 22308957 gccgcggccgccgcgcccgcgcccg 22308933
>emb|AL831806.5|CNS08CAJ Oryza sativa chromosome 12, . BAC OSJNBb0106P21 of library OSJNBb from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 141427
Score = 42.1 bits (21), Expect = 0.31
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 426 gccgcgcccgcgcccgagccc 446
|||||||||||||||||||||
Sbjct: 78706 gccgcgcccgcgcccgagccc 78726
>gb|AC051633.7| Oryza sativa chromosome 10 BAC OSJNBb0015I11 genomic sequence, complete
sequence
Length = 138824
Score = 42.1 bits (21), Expect = 0.31
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 423 tccgccgcgcccgcgcccgagcccg 447
||||||||||||||||||| |||||
Sbjct: 47891 tccgccgcgcccgcgcccgcgcccg 47915
>dbj|AP003818.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OJ1200_C08
Length = 106214
Score = 42.1 bits (21), Expect = 0.31
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 538 cgctgccggccatgctgctgc 558
|||||||||||||||||||||
Sbjct: 101890 cgctgccggccatgctgctgc 101910
>emb|AL954160.5|CNS08CCY Oryza sativa chromosome 12, . BAC OSJNBb0078J08 of library OSJNBb from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 121243
Score = 42.1 bits (21), Expect = 0.31
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 426 gccgcgcccgcgcccgagccc 446
|||||||||||||||||||||
Sbjct: 33716 gccgcgcccgcgcccgagccc 33696
>dbj|AP003813.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OJ1150_E04
Length = 130973
Score = 42.1 bits (21), Expect = 0.31
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 538 cgctgccggccatgctgctgc 558
|||||||||||||||||||||
Sbjct: 89051 cgctgccggccatgctgctgc 89071
>dbj|AP005516.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OSJNBa0066H10
Length = 200968
Score = 42.1 bits (21), Expect = 0.31
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 424 ccgccgcgcccgcgcccgagc 444
|||||||||||||||||||||
Sbjct: 115637 ccgccgcgcccgcgcccgagc 115657
>ref|NT_079839.2| Oryza sativa (japonica cultivar-group)
Length = 150260
Score = 42.1 bits (21), Expect = 0.31
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 426 gccgcgcccgcgcccgagccc 446
|||||||||||||||||||||
Sbjct: 87528 gccgcgcccgcgcccgagccc 87548
>ref|NT_107078.1| Oryza sativa (japonica cultivar-group)
Length = 747721
Score = 42.1 bits (21), Expect = 0.31
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 417 gccgcgtccgccgcgcccgcgcccg 441
|||||| ||||||||||||||||||
Sbjct: 439674 gccgcggccgccgcgcccgcgcccg 439650
>dbj|AP005558.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
clone:OJ1155_H10
Length = 140475
Score = 42.1 bits (21), Expect = 0.31
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 417 gccgcgtccgccgcgcccgcgcccg 441
|||||| ||||||||||||||||||
Sbjct: 70965 gccgcggccgccgcgcccgcgcccg 70941
>gb|AACV01015490.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg015490, whole
genome shotgun sequence
Length = 23317
Score = 42.1 bits (21), Expect = 0.31
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 424 ccgccgcgcccgcgcccgagc 444
|||||||||||||||||||||
Sbjct: 16705 ccgccgcgcccgcgcccgagc 16685
>gb|AACV01017047.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg017047, whole
genome shotgun sequence
Length = 18370
Score = 42.1 bits (21), Expect = 0.31
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 538 cgctgccggccatgctgctgc 558
|||||||||||||||||||||
Sbjct: 1778 cgctgccggccatgctgctgc 1798
>gb|AACV01022023.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg022023, whole
genome shotgun sequence
Length = 22062
Score = 42.1 bits (21), Expect = 0.31
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 423 tccgccgcgcccgcgcccgagcccg 447
||||||||||||||||||| |||||
Sbjct: 14248 tccgccgcgcccgcgcccgcgcccg 14272
>gb|AACV01024261.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg024261, whole
genome shotgun sequence
Length = 27006
Score = 42.1 bits (21), Expect = 0.31
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 426 gccgcgcccgcgcccgagccc 446
|||||||||||||||||||||
Sbjct: 20008 gccgcgcccgcgcccgagccc 19988
>ref|NM_197588.1| Oryza sativa (japonica cultivar-group) hypothetical protein
(OSJNBb0015I11.7), mRNA
Length = 1320
Score = 42.1 bits (21), Expect = 0.31
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 423 tccgccgcgcccgcgcccgagcccg 447
||||||||||||||||||| |||||
Sbjct: 349 tccgccgcgcccgcgcccgcgcccg 373
>ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chromosome 10
Length = 4609300
Score = 42.1 bits (21), Expect = 0.31
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 423 tccgccgcgcccgcgcccgagcccg 447
||||||||||||||||||| |||||
Sbjct: 2568633 tccgccgcgcccgcgcccgcgcccg 2568657
>ref|XM_479604.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 414
Score = 42.1 bits (21), Expect = 0.31
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 538 cgctgccggccatgctgctgc 558
|||||||||||||||||||||
Sbjct: 32 cgctgccggccatgctgctgc 12
>ref|NT_079879.2| Oryza sativa (japonica cultivar-group)
Length = 11570172
Score = 42.1 bits (21), Expect = 0.31
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 424 ccgccgcgcccgcgcccgagc 444
|||||||||||||||||||||
Sbjct: 7045020 ccgccgcgcccgcgcccgagc 7045040
>ref|NT_079899.2| Oryza sativa (japonica cultivar-group)
Length = 17249721
Score = 42.1 bits (21), Expect = 0.31
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 538 cgctgccggccatgctgctgc 558
|||||||||||||||||||||
Sbjct: 16766938 cgctgccggccatgctgctgc 16766958
>dbj|AP006171.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
clone:OSJNBa0070E11
Length = 142855
Score = 42.1 bits (21), Expect = 0.31
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 417 gccgcgtccgccgcgcccgcgcccg 441
|||||| ||||||||||||||||||
Sbjct: 128855 gccgcggccgccgcgcccgcgcccg 128831
>gb|CH401273.1| Oryza sativa (japonica cultivar-group) chromosome 12 scaffold000110
genomic scaffold, whole genome shotgun sequence
Length = 2295345
Score = 42.1 bits (21), Expect = 0.31
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 426 gccgcgcccgcgcccgagccc 446
|||||||||||||||||||||
Sbjct: 626948 gccgcgcccgcgcccgagccc 626968
>gb|CH401254.1| Oryza sativa (japonica cultivar-group) chromosome 10 scaffold000091 genomic
scaffold, whole genome shotgun sequence
Length = 10615099
Score = 42.1 bits (21), Expect = 0.31
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 423 tccgccgcgcccgcgcccgagcccg 447
||||||||||||||||||| |||||
Sbjct: 8614672 tccgccgcgcccgcgcccgcgcccg 8614696
>gb|CH401226.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000063 genomic
scaffold, whole genome shotgun sequence
Length = 15204090
Score = 42.1 bits (21), Expect = 0.31
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 538 cgctgccggccatgctgctgc 558
|||||||||||||||||||||
Sbjct: 14753108 cgctgccggccatgctgctgc 14753128
>gb|CH401221.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000058
genomic scaffold, whole genome shotgun sequence
Length = 3500188
Score = 42.1 bits (21), Expect = 0.31
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 424 ccgccgcgcccgcgcccgagc 444
|||||||||||||||||||||
Sbjct: 923941 ccgccgcgcccgcgcccgagc 923961
>gb|CM000149.1| Oryza sativa (japonica cultivar-group) chromosome 12, whole genome shotgun
sequence
Length = 23730396
Score = 42.1 bits (21), Expect = 0.31
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 426 gccgcgcccgcgcccgagccc 446
|||||||||||||||||||||
Sbjct: 6380067 gccgcgcccgcgcccgagccc 6380087
>gb|CM000147.1| Oryza sativa (japonica cultivar-group) chromosome 10, whole genome shotgun
sequence
Length = 21480893
Score = 42.1 bits (21), Expect = 0.31
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 423 tccgccgcgcccgcgcccgagcccg 447
||||||||||||||||||| |||||
Sbjct: 19480466 tccgccgcgcccgcgcccgcgcccg 19480490
>gb|CM000144.1| Oryza sativa (japonica cultivar-group) chromosome 7, whole genome shotgun
sequence
Length = 28626509
Score = 42.1 bits (21), Expect = 0.31
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 538 cgctgccggccatgctgctgc 558
|||||||||||||||||||||
Sbjct: 28152547 cgctgccggccatgctgctgc 28152567
Score = 42.1 bits (21), Expect = 0.31
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 424 ccgccgcgcccgcgcccgagc 444
|||||||||||||||||||||
Sbjct: 6977566 ccgccgcgcccgcgcccgagc 6977586
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 975,860
Number of Sequences: 438736
Number of extensions: 975860
Number of successful extensions: 36886
Number of sequences better than 0.5: 55
Number of HSP's better than 0.5 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 35491
Number of HSP's gapped (non-prelim): 1377
length of query: 560
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 539
effective length of database: 2,791,206,460
effective search space: 1504460281940
effective search space used: 1504460281940
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)