BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8636621.2.1
(691 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB685030.1|CB685030 OSJNEf15B24.f OSJNEf Oryza sativa (j... 270 9e-070
dbj|AK061406.1| Oryza sativa (japonica cultivar-group) cDNA... 270 9e-070
dbj|AK099425.1| Oryza sativa (japonica cultivar-group) cDNA... 270 9e-070
dbj|AK104596.1| Oryza sativa (japonica cultivar-group) cDNA... 270 9e-070
dbj|AK104611.1| Oryza sativa (japonica cultivar-group) cDNA... 270 9e-070
ref|NM_184112.2| Oryza sativa (japonica cultivar-group), mRNA 270 9e-070
gb|CB685240.1|CB685240 OSJNEf15H22.r OSJNEf Oryza sativa (j... 224 5e-056
dbj|AK061369.1| Oryza sativa (japonica cultivar-group) cDNA... 218 3e-054
gb|CF277123.1|CF277123 14ETL--02-I15.g1 Rice etiolated leaf... 163 2e-037
dbj|AP002747.2| Oryza sativa (japonica cultivar-group) geno... 145 4e-032
dbj|AP002541.2| Oryza sativa (japonica cultivar-group) geno... 145 4e-032
gb|AACV01000079.1| Oryza sativa (japonica cultivar-group) c... 145 4e-032
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 145 4e-032
ref|NT_036312.3| Oryza sativa (japonica cultivar-group) 145 4e-032
gb|CH401164.1| Oryza sativa (japonica cultivar-group) chrom... 145 4e-032
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 145 4e-032
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 145 4e-032
gb|AU174335.1|AU174335 AU174335 Rice shoot Oryza sativa (ja... 113 1e-022
dbj|AG207429.1| Oryza sativa (japonica cultivar-group) DNA,... 62 4e-007
ref|XM_465336.1| Oryza sativa (japonica cultivar-group), mRNA 56 3e-005
dbj|AK071683.1| Oryza sativa (japonica cultivar-group) cDNA... 54 1e-004
dbj|AK099177.1| Oryza sativa (japonica cultivar-group) cDNA... 54 1e-004
ref|XM_483787.1| Oryza sativa (japonica cultivar-group), mRNA 54 1e-004
ref|XM_507340.1| PREDICTED Oryza sativa (japonica cultivar-... 54 1e-004
gb|CB684623.1|CB684623 OSJNEf14F09.f OSJNEf Oryza sativa (j... 52 4e-004
gb|AU222938.1|AU222938 AU222938 Rice shoot Oryza sativa (ja... 50 0.002
gb|AU222933.1|AU222933 AU222933 Rice shoot Oryza sativa (ja... 48 0.006
gb|AC108505.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.006
dbj|AK110589.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.006
dbj|AP005544.3| Oryza sativa (japonica cultivar-group) geno... 48 0.006
gb|AC129718.2| Oryza sativa (japonica cultivar-group) chrom... 48 0.006
gb|AACV01002223.1| Oryza sativa (japonica cultivar-group) c... 48 0.006
gb|AACV01012463.1| Oryza sativa (japonica cultivar-group) c... 48 0.006
ref|XM_475475.1| Oryza sativa (japonica cultivar-group), p... 48 0.006
ref|NT_107214.1| Oryza sativa (japonica cultivar-group) 48 0.006
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 48 0.006
gb|CH401206.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.006
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.006
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.006
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 48 0.006
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 48 0.006
gb|AC104285.2| Oryza sativa (japonica cultivar-group) chrom... 44 0.099
gb|AACV01000406.1| Oryza sativa (japonica cultivar-group) c... 44 0.099
gb|AACV01010742.1| Oryza sativa (japonica cultivar-group) c... 44 0.099
ref|NM_188358.1| Oryza sativa (japonica cultivar-group), p... 44 0.099
ref|NT_079870.2| Oryza sativa (japonica cultivar-group) 44 0.099
dbj|AP003052.3| Oryza sativa (japonica cultivar-group) geno... 44 0.099
gb|CH401191.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.099
>gb|CB685030.1|CB685030 OSJNEf15B24.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf15B24 5', mRNA sequence
Length = 697
Score = 270 bits (136), Expect = 9e-070
Identities = 274/320 (85%)
Strand = Plus / Minus
Query: 372 cttcttctcggcgctcttgccccacagcacgaagtagaggccgatgacgatcagcacagc 431
||||||||| |||| |||||||||||||||||||| || ||||| || ||||| || ||
Sbjct: 665 cttcttctcctcgcttttgccccacagcacgaagtacagcccgatcacaatcagaactgc 606
Query: 432 tccaatgatccctcccgtgtagagctggtccccgaggatggcggaagccatgacggcgac 491
||| ||||||||||| | ||| ||||| || ||||| ||| || ||||||||||||||
Sbjct: 605 tccgatgatccctcctgagtatagctgatctccgagaatgatggcggccatgacggcgac 546
Query: 492 ggccacggtctgcactggctggaagacggcggtgaagagcgggcctcccctgtcgatgca 551
||| |||||||| || |||||||| ||||||||||| ||||| |||||||||||||||||
Sbjct: 545 ggcgacggtctggaccggctggaacacggcggtgaacagcggccctcccctgtcgatgca 486
Query: 552 ccagatctgcagagcaaacgctaccccggatgccacaaggccagcgtataggatggtgaa 611
||| ||||||||||||||||| || || ||||||||||| |||||||| ||||| |||||
Sbjct: 485 ccatatctgcagagcaaacgccacgccagatgccacaagaccagcgtagaggattgtgaa 426
Query: 612 gagctcccctcctgagcggaccttccacctgctcaggtcctcctcggtgaaggcggcaat 671
||||| | ||| ||| |||||||| ||||||||||| || || |||||||| |||||
Sbjct: 425 cagctcgcttccggagttcaccttccatctgctcaggtcttcttcagtgaaggctgcaat 366
Query: 672 ggccaggaactggaggagcc 691
| ||||||||||||||||||
Sbjct: 365 gaccaggaactggaggagcc 346
>dbj|AK061406.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-A04, full
insert sequence
Length = 1488
Score = 270 bits (136), Expect = 9e-070
Identities = 274/320 (85%)
Strand = Plus / Minus
Query: 372 cttcttctcggcgctcttgccccacagcacgaagtagaggccgatgacgatcagcacagc 431
||||||||| |||| |||||||||||||||||||| || ||||| || ||||| || ||
Sbjct: 1091 cttcttctcctcgcttttgccccacagcacgaagtacagcccgatcacaatcagaactgc 1032
Query: 432 tccaatgatccctcccgtgtagagctggtccccgaggatggcggaagccatgacggcgac 491
||| ||||||||||| | ||| ||||| || ||||| ||| || ||||||||||||||
Sbjct: 1031 tccgatgatccctcctgagtatagctgatctccgagaatgatggcggccatgacggcgac 972
Query: 492 ggccacggtctgcactggctggaagacggcggtgaagagcgggcctcccctgtcgatgca 551
||| |||||||| || |||||||| ||||||||||| ||||| |||||||||||||||||
Sbjct: 971 ggcgacggtctggaccggctggaacacggcggtgaacagcggccctcccctgtcgatgca 912
Query: 552 ccagatctgcagagcaaacgctaccccggatgccacaaggccagcgtataggatggtgaa 611
||| ||||||||||||||||| || || ||||||||||| |||||||| ||||| |||||
Sbjct: 911 ccatatctgcagagcaaacgccacgccagatgccacaagaccagcgtagaggattgtgaa 852
Query: 612 gagctcccctcctgagcggaccttccacctgctcaggtcctcctcggtgaaggcggcaat 671
||||| | ||| ||| |||||||| ||||||||||| || || |||||||| |||||
Sbjct: 851 cagctcgcttccggagttcaccttccatctgctcaggtcttcttcagtgaaggctgcaat 792
Query: 672 ggccaggaactggaggagcc 691
| ||||||||||||||||||
Sbjct: 791 gaccaggaactggaggagcc 772
>dbj|AK099425.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013010E01, full
insert sequence
Length = 1185
Score = 270 bits (136), Expect = 9e-070
Identities = 274/320 (85%)
Strand = Plus / Minus
Query: 372 cttcttctcggcgctcttgccccacagcacgaagtagaggccgatgacgatcagcacagc 431
||||||||| |||| |||||||||||||||||||| || ||||| || ||||| || ||
Sbjct: 791 cttcttctcctcgcttttgccccacagcacgaagtacagcccgatcacaatcagaactgc 732
Query: 432 tccaatgatccctcccgtgtagagctggtccccgaggatggcggaagccatgacggcgac 491
||| ||||||||||| | ||| ||||| || ||||| ||| || ||||||||||||||
Sbjct: 731 tccgatgatccctcctgagtatagctgatctccgagaatgatggcggccatgacggcgac 672
Query: 492 ggccacggtctgcactggctggaagacggcggtgaagagcgggcctcccctgtcgatgca 551
||| |||||||| || |||||||| ||||||||||| ||||| |||||||||||||||||
Sbjct: 671 ggcgacggtctggaccggctggaacacggcggtgaacagcggccctcccctgtcgatgca 612
Query: 552 ccagatctgcagagcaaacgctaccccggatgccacaaggccagcgtataggatggtgaa 611
||| ||||||||||||||||| || || ||||||||||| |||||||| ||||| |||||
Sbjct: 611 ccatatctgcagagcaaacgccacgccagatgccacaagaccagcgtagaggattgtgaa 552
Query: 612 gagctcccctcctgagcggaccttccacctgctcaggtcctcctcggtgaaggcggcaat 671
||||| | ||| ||| |||||||| ||||||||||| || || |||||||| |||||
Sbjct: 551 cagctcgcttccggagttcaccttccatctgctcaggtcttcttcagtgaaggctgcaat 492
Query: 672 ggccaggaactggaggagcc 691
| ||||||||||||||||||
Sbjct: 491 gaccaggaactggaggagcc 472
>dbj|AK104596.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-E02, full
insert sequence
Length = 1353
Score = 270 bits (136), Expect = 9e-070
Identities = 274/320 (85%)
Strand = Plus / Minus
Query: 372 cttcttctcggcgctcttgccccacagcacgaagtagaggccgatgacgatcagcacagc 431
||||||||| |||| |||||||||||||||||||| || ||||| || ||||| || ||
Sbjct: 1094 cttcttctcctcgcttttgccccacagcacgaagtacagcccgatcacaatcagaactgc 1035
Query: 432 tccaatgatccctcccgtgtagagctggtccccgaggatggcggaagccatgacggcgac 491
||| ||||||||||| | ||| ||||| || ||||| ||| || ||||||||||||||
Sbjct: 1034 tccgatgatccctcctgagtatagctgatctccgagaatgatggcggccatgacggcgac 975
Query: 492 ggccacggtctgcactggctggaagacggcggtgaagagcgggcctcccctgtcgatgca 551
||| |||||||| || |||||||| ||||||||||| ||||| |||||||||||||||||
Sbjct: 974 ggcgacggtctggaccggctggaacacggcggtgaacagcggccctcccctgtcgatgca 915
Query: 552 ccagatctgcagagcaaacgctaccccggatgccacaaggccagcgtataggatggtgaa 611
||| ||||||||||||||||| || || ||||||||||| |||||||| ||||| |||||
Sbjct: 914 ccatatctgcagagcaaacgccacgccagatgccacaagaccagcgtagaggattgtgaa 855
Query: 612 gagctcccctcctgagcggaccttccacctgctcaggtcctcctcggtgaaggcggcaat 671
||||| | ||| ||| |||||||| ||||||||||| || || |||||||| |||||
Sbjct: 854 cagctcgcttccggagttcaccttccatctgctcaggtcttcttcagtgaaggctgcaat 795
Query: 672 ggccaggaactggaggagcc 691
| ||||||||||||||||||
Sbjct: 794 gaccaggaactggaggagcc 775
>dbj|AK104611.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-C11, full
insert sequence
Length = 1369
Score = 270 bits (136), Expect = 9e-070
Identities = 274/320 (85%)
Strand = Plus / Minus
Query: 372 cttcttctcggcgctcttgccccacagcacgaagtagaggccgatgacgatcagcacagc 431
||||||||| |||| |||||||||||||||||||| || ||||| || ||||| || ||
Sbjct: 1097 cttcttctcctcgcttttgccccacagcacgaagtacagcccgatcacaatcagaactgc 1038
Query: 432 tccaatgatccctcccgtgtagagctggtccccgaggatggcggaagccatgacggcgac 491
||| ||||||||||| | ||| ||||| || ||||| ||| || ||||||||||||||
Sbjct: 1037 tccgatgatccctcctgagtatagctgatctccgagaatgatggcggccatgacggcgac 978
Query: 492 ggccacggtctgcactggctggaagacggcggtgaagagcgggcctcccctgtcgatgca 551
||| |||||||| || |||||||| ||||||||||| ||||| |||||||||||||||||
Sbjct: 977 ggcgacggtctggaccggctggaacacggcggtgaacagcggccctcccctgtcgatgca 918
Query: 552 ccagatctgcagagcaaacgctaccccggatgccacaaggccagcgtataggatggtgaa 611
||| ||||||||||||||||| || || ||||||||||| |||||||| ||||| |||||
Sbjct: 917 ccatatctgcagagcaaacgccacgccagatgccacaagaccagcgtagaggattgtgaa 858
Query: 612 gagctcccctcctgagcggaccttccacctgctcaggtcctcctcggtgaaggcggcaat 671
||||| | ||| ||| |||||||| ||||||||||| || || |||||||| |||||
Sbjct: 857 cagctcgcttccggagttcaccttccatctgctcaggtcttcttcagtgaaggctgcaat 798
Query: 672 ggccaggaactggaggagcc 691
| ||||||||||||||||||
Sbjct: 797 gaccaggaactggaggagcc 778
>ref|NM_184112.2| Oryza sativa (japonica cultivar-group), mRNA
Length = 1353
Score = 270 bits (136), Expect = 9e-070
Identities = 274/320 (85%)
Strand = Plus / Minus
Query: 372 cttcttctcggcgctcttgccccacagcacgaagtagaggccgatgacgatcagcacagc 431
||||||||| |||| |||||||||||||||||||| || ||||| || ||||| || ||
Sbjct: 1094 cttcttctcctcgcttttgccccacagcacgaagtacagcccgatcacaatcagaactgc 1035
Query: 432 tccaatgatccctcccgtgtagagctggtccccgaggatggcggaagccatgacggcgac 491
||| ||||||||||| | ||| ||||| || ||||| ||| || ||||||||||||||
Sbjct: 1034 tccgatgatccctcctgagtatagctgatctccgagaatgatggcggccatgacggcgac 975
Query: 492 ggccacggtctgcactggctggaagacggcggtgaagagcgggcctcccctgtcgatgca 551
||| |||||||| || |||||||| ||||||||||| ||||| |||||||||||||||||
Sbjct: 974 ggcgacggtctggaccggctggaacacggcggtgaacagcggccctcccctgtcgatgca 915
Query: 552 ccagatctgcagagcaaacgctaccccggatgccacaaggccagcgtataggatggtgaa 611
||| ||||||||||||||||| || || ||||||||||| |||||||| ||||| |||||
Sbjct: 914 ccatatctgcagagcaaacgccacgccagatgccacaagaccagcgtagaggattgtgaa 855
Query: 612 gagctcccctcctgagcggaccttccacctgctcaggtcctcctcggtgaaggcggcaat 671
||||| | ||| ||| |||||||| ||||||||||| || || |||||||| |||||
Sbjct: 854 cagctcgcttccggagttcaccttccatctgctcaggtcttcttcagtgaaggctgcaat 795
Query: 672 ggccaggaactggaggagcc 691
| ||||||||||||||||||
Sbjct: 794 gaccaggaactggaggagcc 775
>gb|CB685240.1|CB685240 OSJNEf15H22.r OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf15H22 3', mRNA sequence
Length = 695
Score = 224 bits (113), Expect = 5e-056
Identities = 254/301 (84%)
Strand = Plus / Plus
Query: 372 cttcttctcggcgctcttgccccacagcacgaagtagaggccgatgacgatcagcacagc 431
||||||||| |||| |||||||||||||||||||| || ||||| || ||||| || ||
Sbjct: 394 cttcttctcctcgcttttgccccacagcacgaagtacagcccgatcacaatcagaactgc 453
Query: 432 tccaatgatccctcccgtgtagagctggtccccgaggatggcggaagccatgacggcgac 491
||| ||||||||||| | ||| ||||| || ||||| ||| || |||||||| |||||
Sbjct: 454 tccgatgatccctcctgagtatagctgatctccgagaatgatggcggccatgacagcgac 513
Query: 492 ggccacggtctgcactggctggaagacggcggtgaagagcgggcctcccctgtcgatgca 551
||| |||||||| || |||||||| ||||| ||||| ||||| |||||||||||||||||
Sbjct: 514 ggcgacggtctggaccggctggaacacggcagtgaacagcggccctcccctgtcgatgca 573
Query: 552 ccagatctgcagagcaaacgctaccccggatgccacaaggccagcgtataggatggtgaa 611
||| ||||||||||||||||| || || ||||||||||| |||||||| ||||| |||||
Sbjct: 574 ccatatctgcagagcaaacgccacgccagatgccacaagaccagcgtagaggattgtgaa 633
Query: 612 gagctcccctcctgagcggaccttccacctgctcaggtcctcctcggtgaaggcggcaat 671
||||| | ||| ||| |||||||| ||||||||||| || || |||||||| |||||
Sbjct: 634 cagctcgcttccggagttcaccttccatctgctcaggtcttcttcagtgaaggctgcaat 693
Query: 672 g 672
|
Sbjct: 694 g 694
>dbj|AK061369.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-D10, full
insert sequence
Length = 1039
Score = 218 bits (110), Expect = 3e-054
Identities = 188/214 (87%)
Strand = Plus / Minus
Query: 478 gccatgacggcgacggccacggtctgcactggctggaagacggcggtgaagagcgggcct 537
||||||||||||||||| |||||||| || |||||||| ||||||||||| ||||| |||
Sbjct: 993 gccatgacggcgacggcgacggtctggaccggctggaacacggcggtgaacagcggccct 934
Query: 538 cccctgtcgatgcaccagatctgcagagcaaacgctaccccggatgccacaaggccagcg 597
||||||||||||||||| ||||||||||||||||| || || ||||||||||| ||||||
Sbjct: 933 cccctgtcgatgcaccatatctgcagagcaaacgccacgccagatgccacaagaccagcg 874
Query: 598 tataggatggtgaagagctcccctcctgagcggaccttccacctgctcaggtcctcctcg 657
|| ||||| ||||| ||||| | ||| ||| |||||||| ||||||||||| || ||
Sbjct: 873 tagaggattgtgaacagctcgcttccggagttcaccttccatctgctcaggtcttcttca 814
Query: 658 gtgaaggcggcaatggccaggaactggaggagcc 691
|||||||| |||||| ||||||||||||||||||
Sbjct: 813 gtgaaggctgcaatgaccaggaactggaggagcc 780
>gb|CF277123.1|CF277123 14ETL--02-I15.g1 Rice etiolated leaf plasmid cDNA library (14ETL)
Oryza sativa (japonica cultivar-group) cDNA clone
14ETL--02-I15, mRNA sequence
Length = 468
Score = 163 bits (82), Expect = 2e-037
Identities = 163/190 (85%)
Strand = Plus / Plus
Query: 372 cttcttctcggcgctcttgccccacagcacgaagtagaggccgatgacgatcagcacagc 431
||||||||| |||| |||||||||||||||||||| || ||||| || ||||| || ||
Sbjct: 279 cttcttctcctcgcttttgccccacagcacgaagtacagcccgatcacaatcagaactgc 338
Query: 432 tccaatgatccctcccgtgtagagctggtccccgaggatggcggaagccatgacggcgac 491
||| ||||||||||| | ||| ||||| || ||||| ||| || ||||||||||||||
Sbjct: 339 tccgatgatccctcctgagtatagctgatctccgagaatgatggcggccatgacggcgac 398
Query: 492 ggccacggtctgcactggctggaagacggcggtgaagagcgggcctcccctgtcgatgca 551
||| |||||||| || |||||||| ||||||||||| ||||| |||||||||||||||||
Sbjct: 399 ggcgacggtctggaccggctggaacacggcggtgaacagcggccctcccctgtcgatgca 458
Query: 552 ccagatctgc 561
||| ||||||
Sbjct: 459 ccatatctgc 468
>dbj|AP002747.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0698G03
Length = 147857
Score = 145 bits (73), Expect = 4e-032
Identities = 103/113 (91%)
Strand = Plus / Minus
Query: 478 gccatgacggcgacggccacggtctgcactggctggaagacggcggtgaagagcgggcct 537
||||||||||||||||| |||||||| || |||||||| ||||||||||| ||||| |||
Sbjct: 146240 gccatgacggcgacggcgacggtctggaccggctggaacacggcggtgaacagcggccct 146181
Query: 538 cccctgtcgatgcaccagatctgcagagcaaacgctaccccggatgccacaag 590
||||||||||||||||| ||||||||||||||||| || || |||||||||||
Sbjct: 146180 cccctgtcgatgcaccatatctgcagagcaaacgccacgccagatgccacaag 146128
Score = 77.8 bits (39), Expect = 7e-012
Identities = 84/99 (84%)
Strand = Plus / Minus
Query: 593 cagcgtataggatggtgaagagctcccctcctgagcggaccttccacctgctcaggtcct 652
||||||| ||||| ||||| ||||| | ||| ||| |||||||| ||||||||||| |
Sbjct: 146031 cagcgtagaggattgtgaacagctcgcttccggagttcaccttccatctgctcaggtctt 145972
Query: 653 cctcggtgaaggcggcaatggccaggaactggaggagcc 691
| || |||||||| |||||| ||||||||||||||||||
Sbjct: 145971 cttcagtgaaggctgcaatgaccaggaactggaggagcc 145933
Score = 61.9 bits (31), Expect = 4e-007
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 372 cttcttctcggcgctcttgccccacagcacgaagtagaggccgatgacgatcagcacagc 431
||||||||| |||| |||||||||||||||||||| || ||||| || ||||| || ||
Sbjct: 146451 cttcttctcctcgcttttgccccacagcacgaagtacagcccgatcacaatcagaactgc 146392
Query: 432 tccaatgatcc 442
||| |||||||
Sbjct: 146391 tccgatgatcc 146381
>dbj|AP002541.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0494A10
Length = 145576
Score = 145 bits (73), Expect = 4e-032
Identities = 103/113 (91%)
Strand = Plus / Minus
Query: 478 gccatgacggcgacggccacggtctgcactggctggaagacggcggtgaagagcgggcct 537
||||||||||||||||| |||||||| || |||||||| ||||||||||| ||||| |||
Sbjct: 48463 gccatgacggcgacggcgacggtctggaccggctggaacacggcggtgaacagcggccct 48404
Query: 538 cccctgtcgatgcaccagatctgcagagcaaacgctaccccggatgccacaag 590
||||||||||||||||| ||||||||||||||||| || || |||||||||||
Sbjct: 48403 cccctgtcgatgcaccatatctgcagagcaaacgccacgccagatgccacaag 48351
Score = 77.8 bits (39), Expect = 7e-012
Identities = 84/99 (84%)
Strand = Plus / Minus
Query: 593 cagcgtataggatggtgaagagctcccctcctgagcggaccttccacctgctcaggtcct 652
||||||| ||||| ||||| ||||| | ||| ||| |||||||| ||||||||||| |
Sbjct: 48254 cagcgtagaggattgtgaacagctcgcttccggagttcaccttccatctgctcaggtctt 48195
Query: 653 cctcggtgaaggcggcaatggccaggaactggaggagcc 691
| || |||||||| |||||| ||||||||||||||||||
Sbjct: 48194 cttcagtgaaggctgcaatgaccaggaactggaggagcc 48156
Score = 61.9 bits (31), Expect = 4e-007
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 372 cttcttctcggcgctcttgccccacagcacgaagtagaggccgatgacgatcagcacagc 431
||||||||| |||| |||||||||||||||||||| || ||||| || ||||| || ||
Sbjct: 48674 cttcttctcctcgcttttgccccacagcacgaagtacagcccgatcacaatcagaactgc 48615
Query: 432 tccaatgatcc 442
||| |||||||
Sbjct: 48614 tccgatgatcc 48604
>gb|AACV01000079.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg000079, whole
genome shotgun sequence
Length = 67427
Score = 145 bits (73), Expect = 4e-032
Identities = 103/113 (91%)
Strand = Plus / Plus
Query: 478 gccatgacggcgacggccacggtctgcactggctggaagacggcggtgaagagcgggcct 537
||||||||||||||||| |||||||| || |||||||| ||||||||||| ||||| |||
Sbjct: 37689 gccatgacggcgacggcgacggtctggaccggctggaacacggcggtgaacagcggccct 37748
Query: 538 cccctgtcgatgcaccagatctgcagagcaaacgctaccccggatgccacaag 590
||||||||||||||||| ||||||||||||||||| || || |||||||||||
Sbjct: 37749 cccctgtcgatgcaccatatctgcagagcaaacgccacgccagatgccacaag 37801
Score = 77.8 bits (39), Expect = 7e-012
Identities = 84/99 (84%)
Strand = Plus / Plus
Query: 593 cagcgtataggatggtgaagagctcccctcctgagcggaccttccacctgctcaggtcct 652
||||||| ||||| ||||| ||||| | ||| ||| |||||||| ||||||||||| |
Sbjct: 37898 cagcgtagaggattgtgaacagctcgcttccggagttcaccttccatctgctcaggtctt 37957
Query: 653 cctcggtgaaggcggcaatggccaggaactggaggagcc 691
| || |||||||| |||||| ||||||||||||||||||
Sbjct: 37958 cttcagtgaaggctgcaatgaccaggaactggaggagcc 37996
Score = 61.9 bits (31), Expect = 4e-007
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 372 cttcttctcggcgctcttgccccacagcacgaagtagaggccgatgacgatcagcacagc 431
||||||||| |||| |||||||||||||||||||| || ||||| || ||||| || ||
Sbjct: 37478 cttcttctcctcgcttttgccccacagcacgaagtacagcccgatcacaatcagaactgc 37537
Query: 432 tccaatgatcc 442
||| |||||||
Sbjct: 37538 tccgatgatcc 37548
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 145 bits (73), Expect = 4e-032
Identities = 103/113 (91%)
Strand = Plus / Minus
Query: 478 gccatgacggcgacggccacggtctgcactggctggaagacggcggtgaagagcgggcct 537
||||||||||||||||| |||||||| || |||||||| ||||||||||| ||||| |||
Sbjct: 1008597 gccatgacggcgacggcgacggtctggaccggctggaacacggcggtgaacagcggccct 1008538
Query: 538 cccctgtcgatgcaccagatctgcagagcaaacgctaccccggatgccacaag 590
||||||||||||||||| ||||||||||||||||| || || |||||||||||
Sbjct: 1008537 cccctgtcgatgcaccatatctgcagagcaaacgccacgccagatgccacaag 1008485
Score = 77.8 bits (39), Expect = 7e-012
Identities = 84/99 (84%)
Strand = Plus / Minus
Query: 593 cagcgtataggatggtgaagagctcccctcctgagcggaccttccacctgctcaggtcct 652
||||||| ||||| ||||| ||||| | ||| ||| |||||||| ||||||||||| |
Sbjct: 1008388 cagcgtagaggattgtgaacagctcgcttccggagttcaccttccatctgctcaggtctt 1008329
Query: 653 cctcggtgaaggcggcaatggccaggaactggaggagcc 691
| || |||||||| |||||| ||||||||||||||||||
Sbjct: 1008328 cttcagtgaaggctgcaatgaccaggaactggaggagcc 1008290
Score = 61.9 bits (31), Expect = 4e-007
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 372 cttcttctcggcgctcttgccccacagcacgaagtagaggccgatgacgatcagcacagc 431
||||||||| |||| |||||||||||||||||||| || ||||| || ||||| || ||
Sbjct: 1008808 cttcttctcctcgcttttgccccacagcacgaagtacagcccgatcacaatcagaactgc 1008749
Query: 432 tccaatgatcc 442
||| |||||||
Sbjct: 1008748 tccgatgatcc 1008738
Score = 44.1 bits (22), Expect = 0.099
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 384 gctcttgccccacagcacgaagtagaggcc 413
||||||||||||||||||| |||||||||
Sbjct: 5854555 gctcttgccccacagcacgctgtagaggcc 5854526
>ref|NT_036312.3| Oryza sativa (japonica cultivar-group)
Length = 10050053
Score = 145 bits (73), Expect = 4e-032
Identities = 103/113 (91%)
Strand = Plus / Minus
Query: 478 gccatgacggcgacggccacggtctgcactggctggaagacggcggtgaagagcgggcct 537
||||||||||||||||| |||||||| || |||||||| ||||||||||| ||||| |||
Sbjct: 1008597 gccatgacggcgacggcgacggtctggaccggctggaacacggcggtgaacagcggccct 1008538
Query: 538 cccctgtcgatgcaccagatctgcagagcaaacgctaccccggatgccacaag 590
||||||||||||||||| ||||||||||||||||| || || |||||||||||
Sbjct: 1008537 cccctgtcgatgcaccatatctgcagagcaaacgccacgccagatgccacaag 1008485
Score = 77.8 bits (39), Expect = 7e-012
Identities = 84/99 (84%)
Strand = Plus / Minus
Query: 593 cagcgtataggatggtgaagagctcccctcctgagcggaccttccacctgctcaggtcct 652
||||||| ||||| ||||| ||||| | ||| ||| |||||||| ||||||||||| |
Sbjct: 1008388 cagcgtagaggattgtgaacagctcgcttccggagttcaccttccatctgctcaggtctt 1008329
Query: 653 cctcggtgaaggcggcaatggccaggaactggaggagcc 691
| || |||||||| |||||| ||||||||||||||||||
Sbjct: 1008328 cttcagtgaaggctgcaatgaccaggaactggaggagcc 1008290
Score = 61.9 bits (31), Expect = 4e-007
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 372 cttcttctcggcgctcttgccccacagcacgaagtagaggccgatgacgatcagcacagc 431
||||||||| |||| |||||||||||||||||||| || ||||| || ||||| || ||
Sbjct: 1008808 cttcttctcctcgcttttgccccacagcacgaagtacagcccgatcacaatcagaactgc 1008749
Query: 432 tccaatgatcc 442
||| |||||||
Sbjct: 1008748 tccgatgatcc 1008738
Score = 44.1 bits (22), Expect = 0.099
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 384 gctcttgccccacagcacgaagtagaggcc 413
||||||||||||||||||| |||||||||
Sbjct: 5854395 gctcttgccccacagcacgctgtagaggcc 5854366
>gb|CH401164.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000001 genomic
scaffold, whole genome shotgun sequence
Length = 11616395
Score = 145 bits (73), Expect = 4e-032
Identities = 103/113 (91%)
Strand = Plus / Minus
Query: 478 gccatgacggcgacggccacggtctgcactggctggaagacggcggtgaagagcgggcct 537
||||||||||||||||| |||||||| || |||||||| ||||||||||| ||||| |||
Sbjct: 1029077 gccatgacggcgacggcgacggtctggaccggctggaacacggcggtgaacagcggccct 1029018
Query: 538 cccctgtcgatgcaccagatctgcagagcaaacgctaccccggatgccacaag 590
||||||||||||||||| ||||||||||||||||| || || |||||||||||
Sbjct: 1029017 cccctgtcgatgcaccatatctgcagagcaaacgccacgccagatgccacaag 1028965
Score = 77.8 bits (39), Expect = 7e-012
Identities = 84/99 (84%)
Strand = Plus / Minus
Query: 593 cagcgtataggatggtgaagagctcccctcctgagcggaccttccacctgctcaggtcct 652
||||||| ||||| ||||| ||||| | ||| ||| |||||||| ||||||||||| |
Sbjct: 1028868 cagcgtagaggattgtgaacagctcgcttccggagttcaccttccatctgctcaggtctt 1028809
Query: 653 cctcggtgaaggcggcaatggccaggaactggaggagcc 691
| || |||||||| |||||| ||||||||||||||||||
Sbjct: 1028808 cttcagtgaaggctgcaatgaccaggaactggaggagcc 1028770
Score = 61.9 bits (31), Expect = 4e-007
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 372 cttcttctcggcgctcttgccccacagcacgaagtagaggccgatgacgatcagcacagc 431
||||||||| |||| |||||||||||||||||||| || ||||| || ||||| || ||
Sbjct: 1029288 cttcttctcctcgcttttgccccacagcacgaagtacagcccgatcacaatcagaactgc 1029229
Query: 432 tccaatgatcc 442
||| |||||||
Sbjct: 1029228 tccgatgatcc 1029218
Score = 44.1 bits (22), Expect = 0.099
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 384 gctcttgccccacagcacgaagtagaggcc 413
||||||||||||||||||| |||||||||
Sbjct: 5922690 gctcttgccccacagcacgctgtagaggcc 5922661
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 145 bits (73), Expect = 4e-032
Identities = 103/113 (91%)
Strand = Plus / Minus
Query: 478 gccatgacggcgacggccacggtctgcactggctggaagacggcggtgaagagcgggcct 537
||||||||||||||||| |||||||| || |||||||| ||||||||||| ||||| |||
Sbjct: 1029077 gccatgacggcgacggcgacggtctggaccggctggaacacggcggtgaacagcggccct 1029018
Query: 538 cccctgtcgatgcaccagatctgcagagcaaacgctaccccggatgccacaag 590
||||||||||||||||| ||||||||||||||||| || || |||||||||||
Sbjct: 1029017 cccctgtcgatgcaccatatctgcagagcaaacgccacgccagatgccacaag 1028965
Score = 77.8 bits (39), Expect = 7e-012
Identities = 84/99 (84%)
Strand = Plus / Minus
Query: 593 cagcgtataggatggtgaagagctcccctcctgagcggaccttccacctgctcaggtcct 652
||||||| ||||| ||||| ||||| | ||| ||| |||||||| ||||||||||| |
Sbjct: 1028868 cagcgtagaggattgtgaacagctcgcttccggagttcaccttccatctgctcaggtctt 1028809
Query: 653 cctcggtgaaggcggcaatggccaggaactggaggagcc 691
| || |||||||| |||||| ||||||||||||||||||
Sbjct: 1028808 cttcagtgaaggctgcaatgaccaggaactggaggagcc 1028770
Score = 61.9 bits (31), Expect = 4e-007
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 372 cttcttctcggcgctcttgccccacagcacgaagtagaggccgatgacgatcagcacagc 431
||||||||| |||| |||||||||||||||||||| || ||||| || ||||| || ||
Sbjct: 1029288 cttcttctcctcgcttttgccccacagcacgaagtacagcccgatcacaatcagaactgc 1029229
Query: 432 tccaatgatcc 442
||| |||||||
Sbjct: 1029228 tccgatgatcc 1029218
Score = 48.1 bits (24), Expect = 0.006
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 531 cgggcctcccctgtcgatgcaccagatctgca 562
|||||| ||||||||||||||||| |||||||
Sbjct: 29335569 cgggccccccctgtcgatgcaccatatctgca 29335538
Score = 44.1 bits (22), Expect = 0.099
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 384 gctcttgccccacagcacgaagtagaggcc 413
||||||||||||||||||| |||||||||
Sbjct: 5922690 gctcttgccccacagcacgctgtagaggcc 5922661
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 145 bits (73), Expect = 4e-032
Identities = 103/113 (91%)
Strand = Plus / Minus
Query: 478 gccatgacggcgacggccacggtctgcactggctggaagacggcggtgaagagcgggcct 537
||||||||||||||||| |||||||| || |||||||| ||||||||||| ||||| |||
Sbjct: 1010795 gccatgacggcgacggcgacggtctggaccggctggaacacggcggtgaacagcggccct 1010736
Query: 538 cccctgtcgatgcaccagatctgcagagcaaacgctaccccggatgccacaag 590
||||||||||||||||| ||||||||||||||||| || || |||||||||||
Sbjct: 1010735 cccctgtcgatgcaccatatctgcagagcaaacgccacgccagatgccacaag 1010683
Score = 77.8 bits (39), Expect = 7e-012
Identities = 84/99 (84%)
Strand = Plus / Minus
Query: 593 cagcgtataggatggtgaagagctcccctcctgagcggaccttccacctgctcaggtcct 652
||||||| ||||| ||||| ||||| | ||| ||| |||||||| ||||||||||| |
Sbjct: 1010586 cagcgtagaggattgtgaacagctcgcttccggagttcaccttccatctgctcaggtctt 1010527
Query: 653 cctcggtgaaggcggcaatggccaggaactggaggagcc 691
| || |||||||| |||||| ||||||||||||||||||
Sbjct: 1010526 cttcagtgaaggctgcaatgaccaggaactggaggagcc 1010488
Score = 61.9 bits (31), Expect = 4e-007
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 372 cttcttctcggcgctcttgccccacagcacgaagtagaggccgatgacgatcagcacagc 431
||||||||| |||| |||||||||||||||||||| || ||||| || ||||| || ||
Sbjct: 1011006 cttcttctcctcgcttttgccccacagcacgaagtacagcccgatcacaatcagaactgc 1010947
Query: 432 tccaatgatcc 442
||| |||||||
Sbjct: 1010946 tccgatgatcc 1010936
Score = 44.1 bits (22), Expect = 0.099
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 384 gctcttgccccacagcacgaagtagaggcc 413
||||||||||||||||||| |||||||||
Sbjct: 5856773 gctcttgccccacagcacgctgtagaggcc 5856744
>gb|AU174335.1|AU174335 AU174335 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S4395, mRNA sequence
Length = 457
Score = 113 bits (57), Expect = 1e-022
Identities = 144/172 (83%), Gaps = 1/172 (0%)
Strand = Plus / Minus
Query: 372 cttcttctcggcgctcttgccccacagcacgaagtagaggccgatgacgatcagcacagc 431
||||||||| |||| |||||||||||||||||||| || ||||| || ||||| || ||
Sbjct: 172 cttcttctcctcgcttttgccccacagcacgaagtacagcccgatcacaatcagaactgc 113
Query: 432 tccaatgatccctcccgtgtagagctggtccccgaggatggcggaagccatgacggcgac 491
||| ||||||||||| | ||| ||||| || ||||| ||| || ||||||||||||||
Sbjct: 112 tccgatgatccctcctgagtatagctgatctccgagaatgatggcggccatgacggcgac 53
Query: 492 ggccacggtctgcactggctggaagacggcggtgaagagcgggcctcccctg 543
||| |||||||| || |||||||| |||| || ||| ||||| |||||||||
Sbjct: 52 ggcgacggtctggaccggctggaacacggngg-gaacagcggccctcccctg 2
>dbj|AG207429.1| Oryza sativa (japonica cultivar-group) DNA, clone:ND8021_0_506_1A,
3' flanking sequence of Tos17 insertion in rice strain
ND8021, genomic survey sequence
Length = 360
Score = 61.9 bits (31), Expect = 4e-007
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 372 cttcttctcggcgctcttgccccacagcacgaagtagaggccgatgacgatcagcacagc 431
||||||||| |||| |||||||||||||||||||| || ||||| || ||||| || ||
Sbjct: 201 cttcttctcctcgcttttgccccacagcacgaagtacagcccgatcacaatcagaactgc 260
Query: 432 tccaatgatcc 442
||| |||||||
Sbjct: 261 tccgatgatcc 271
>ref|XM_465336.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1071
Score = 56.0 bits (28), Expect = 3e-005
Identities = 67/80 (83%)
Strand = Plus / Minus
Query: 538 cccctgtcgatgcaccagatctgcagagcaaacgctaccccggatgccacaaggccagcg 597
|||||||| |||||||||||||| |||| || || ||||| || || || || ||||||
Sbjct: 818 cccctgtcaatgcaccagatctgaagagataaagcaacccctgaagcaactagaccagcg 759
Query: 598 tataggatggtgaagagctc 617
|| ||||| |||||||||||
Sbjct: 758 tagaggattgtgaagagctc 739
Score = 52.0 bits (26), Expect = 4e-004
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 391 ccccacagcacgaagtagaggccgatgacgatcagcacagctccaatgatccctcccgtg 450
||||||| ||| | ||||||||| || || || || |||||||||||||||||||| |||
Sbjct: 965 ccccacaacacaaggtagaggccaatcactataaggacagctccaatgatccctcctgtg 906
Query: 451 ta 452
||
Sbjct: 905 ta 904
>dbj|AK071683.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023109M16, full
insert sequence
Length = 1601
Score = 54.0 bits (27), Expect = 1e-004
Identities = 72/87 (82%)
Strand = Plus / Minus
Query: 531 cgggcctcccctgtcgatgcaccagatctgcagagcaaacgctaccccggatgccacaag 590
|||||| ||||||||||||||||| ||||||| || ||||| ||||| || || | |
Sbjct: 997 cgggccccccctgtcgatgcaccatatctgcaccgcgaacgccacccccgacgcgatgaa 938
Query: 591 gccagcgtataggatggtgaagagctc 617
|| ||||| |||||||||||||||||
Sbjct: 937 tccggcgtaaaggatggtgaagagctc 911
>dbj|AK099177.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023096J12, full
insert sequence
Length = 1595
Score = 54.0 bits (27), Expect = 1e-004
Identities = 72/87 (82%)
Strand = Plus / Minus
Query: 531 cgggcctcccctgtcgatgcaccagatctgcagagcaaacgctaccccggatgccacaag 590
|||||| ||||||||||||||||| ||||||| || ||||| ||||| || || | |
Sbjct: 991 cgggccccccctgtcgatgcaccatatctgcaccgcgaacgccacccccgacgcgatgaa 932
Query: 591 gccagcgtataggatggtgaagagctc 617
|| ||||| |||||||||||||||||
Sbjct: 931 tccggcgtaaaggatggtgaagagctc 905
>ref|XM_483787.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1595
Score = 54.0 bits (27), Expect = 1e-004
Identities = 72/87 (82%)
Strand = Plus / Minus
Query: 531 cgggcctcccctgtcgatgcaccagatctgcagagcaaacgctaccccggatgccacaag 590
|||||| ||||||||||||||||| ||||||| || ||||| ||||| || || | |
Sbjct: 991 cgggccccccctgtcgatgcaccatatctgcaccgcgaacgccacccccgacgcgatgaa 932
Query: 591 gccagcgtataggatggtgaagagctc 617
|| ||||| |||||||||||||||||
Sbjct: 931 tccggcgtaaaggatggtgaagagctc 905
>ref|XM_507340.1| PREDICTED Oryza sativa (japonica cultivar-group), P0604E01.39 mRNA
Length = 1601
Score = 54.0 bits (27), Expect = 1e-004
Identities = 72/87 (82%)
Strand = Plus / Minus
Query: 531 cgggcctcccctgtcgatgcaccagatctgcagagcaaacgctaccccggatgccacaag 590
|||||| ||||||||||||||||| ||||||| || ||||| ||||| || || | |
Sbjct: 997 cgggccccccctgtcgatgcaccatatctgcaccgcgaacgccacccccgacgcgatgaa 938
Query: 591 gccagcgtataggatggtgaagagctc 617
|| ||||| |||||||||||||||||
Sbjct: 937 tccggcgtaaaggatggtgaagagctc 911
>gb|CB684623.1|CB684623 OSJNEf14F09.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf14F09 5', mRNA sequence
Length = 780
Score = 52.0 bits (26), Expect = 4e-004
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 658 gtgaaggcggcaatggccaggaactggaggagcc 691
|||||||| |||||| ||||||||||||||||||
Sbjct: 779 gtgaaggctgcaatgaccaggaactggaggagcc 746
>gb|AU222938.1|AU222938 AU222938 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S1956, mRNA sequence
Length = 466
Score = 50.1 bits (25), Expect = 0.002
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 372 cttcttctcggcgctcttgccccacagcacgaagtagaggccgat 416
||||||||| |||| |||||||||||||||||||| || |||||
Sbjct: 47 cttcttctcctcgcttttgccccacagcacgaagtacagcccgat 3
>gb|AU222933.1|AU222933 AU222933 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S1944, mRNA sequence
Length = 457
Score = 48.1 bits (24), Expect = 0.006
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 372 cttcttctcggcgctcttgccccacagcacgaagta 407
||||||||| |||| ||||||||||||||||||||
Sbjct: 38 cttcttctcctcgcttttgccccacagcacgaagta 3
>gb|AC108505.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ2086_B07,
*** SEQUENCING IN PROGRESS ***, 4 ordered pieces
Length = 79991
Score = 48.1 bits (24), Expect = 0.006
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 387 cttgccccacagcacgaagtagaggccgatgacgat 422
||||||||| |||||| |||||||||||| ||||||
Sbjct: 57092 cttgccccagagcacggagtagaggccgacgacgat 57057
>dbj|AK110589.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-168-F05, full
insert sequence
Length = 1552
Score = 48.1 bits (24), Expect = 0.006
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 387 cttgccccacagcacgaagtagaggccgatgacgat 422
||||||||| |||||| |||||||||||| ||||||
Sbjct: 1033 cttgccccagagcacggagtagaggccgacgacgat 998
>dbj|AP005544.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0604E01
Length = 159049
Score = 48.1 bits (24), Expect = 0.006
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 531 cgggcctcccctgtcgatgcaccagatctgca 562
|||||| ||||||||||||||||| |||||||
Sbjct: 111217 cgggccccccctgtcgatgcaccatatctgca 111186
>gb|AC129718.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0088I06,
complete sequence
Length = 187651
Score = 48.1 bits (24), Expect = 0.006
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 387 cttgccccacagcacgaagtagaggccgatgacgat 422
||||||||| |||||| |||||||||||| ||||||
Sbjct: 179692 cttgccccagagcacggagtagaggccgacgacgat 179657
>gb|AACV01002223.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002223, whole
genome shotgun sequence
Length = 13972
Score = 48.1 bits (24), Expect = 0.006
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 531 cgggcctcccctgtcgatgcaccagatctgca 562
|||||| ||||||||||||||||| |||||||
Sbjct: 8111 cgggccccccctgtcgatgcaccatatctgca 8142
>gb|AACV01012463.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg012463, whole
genome shotgun sequence
Length = 29712
Score = 48.1 bits (24), Expect = 0.006
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 387 cttgccccacagcacgaagtagaggccgatgacgat 422
||||||||| |||||| |||||||||||| ||||||
Sbjct: 27644 cttgccccagagcacggagtagaggccgacgacgat 27609
>ref|XM_475475.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1215
Score = 48.1 bits (24), Expect = 0.006
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 387 cttgccccacagcacgaagtagaggccgatgacgat 422
||||||||| |||||| |||||||||||| ||||||
Sbjct: 1002 cttgccccagagcacggagtagaggccgacgacgat 967
>ref|NT_107214.1| Oryza sativa (japonica cultivar-group)
Length = 1031295
Score = 48.1 bits (24), Expect = 0.006
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 387 cttgccccacagcacgaagtagaggccgatgacgat 422
||||||||| |||||| |||||||||||| ||||||
Sbjct: 501155 cttgccccagagcacggagtagaggccgacgacgat 501120
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 48.1 bits (24), Expect = 0.006
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 531 cgggcctcccctgtcgatgcaccagatctgca 562
|||||| ||||||||||||||||| |||||||
Sbjct: 27875635 cgggccccccctgtcgatgcaccatatctgca 27875604
>gb|CH401206.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000043 genomic
scaffold, whole genome shotgun sequence
Length = 11965857
Score = 48.1 bits (24), Expect = 0.006
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 387 cttgccccacagcacgaagtagaggccgatgacgat 422
||||||||| |||||| |||||||||||| ||||||
Sbjct: 6489628 cttgccccagagcacggagtagaggccgacgacgat 6489593
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 48.1 bits (24), Expect = 0.006
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 531 cgggcctcccctgtcgatgcaccagatctgca 562
|||||| ||||||||||||||||| |||||||
Sbjct: 4133848 cgggccccccctgtcgatgcaccatatctgca 4133817
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 48.1 bits (24), Expect = 0.006
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 387 cttgccccacagcacgaagtagaggccgatgacgat 422
||||||||| |||||| |||||||||||| ||||||
Sbjct: 23789941 cttgccccagagcacggagtagaggccgacgacgat 23789906
Score = 44.1 bits (22), Expect = 0.099
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 377 tctcggcgctcttgccccacagcacg 402
||||||||||||| ||||||||||||
Sbjct: 322267 tctcggcgctcttaccccacagcacg 322242
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 48.1 bits (24), Expect = 0.006
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 387 cttgccccacagcacgaagtagaggccgatgacgat 422
||||||||| |||||| |||||||||||| ||||||
Sbjct: 24111203 cttgccccagagcacggagtagaggccgacgacgat 24111168
Score = 44.1 bits (22), Expect = 0.099
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 377 tctcggcgctcttgccccacagcacg 402
||||||||||||| ||||||||||||
Sbjct: 315902 tctcggcgctcttaccccacagcacg 315877
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 48.1 bits (24), Expect = 0.006
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 531 cgggcctcccctgtcgatgcaccagatctgca 562
|||||| ||||||||||||||||| |||||||
Sbjct: 28113722 cgggccccccctgtcgatgcaccatatctgca 28113691
>gb|AC104285.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
OSJNBb0035J08, complete sequence
Length = 117555
Score = 44.1 bits (22), Expect = 0.099
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 377 tctcggcgctcttgccccacagcacg 402
||||||||||||| ||||||||||||
Sbjct: 91422 tctcggcgctcttaccccacagcacg 91397
>gb|AACV01000406.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg000406, whole
genome shotgun sequence
Length = 23309
Score = 44.1 bits (22), Expect = 0.099
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 384 gctcttgccccacagcacgaagtagaggcc 413
||||||||||||||||||| |||||||||
Sbjct: 21620 gctcttgccccacagcacgctgtagaggcc 21649
>gb|AACV01010742.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg010742, whole
genome shotgun sequence
Length = 14526
Score = 44.1 bits (22), Expect = 0.099
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 377 tctcggcgctcttgccccacagcacg 402
||||||||||||| ||||||||||||
Sbjct: 2531 tctcggcgctcttaccccacagcacg 2506
>ref|NM_188358.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1158
Score = 44.1 bits (22), Expect = 0.099
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 384 gctcttgccccacagcacgaagtagaggcc 413
||||||||||||||||||| |||||||||
Sbjct: 1011 gctcttgccccacagcacgctgtagaggcc 982
>ref|NT_079870.2| Oryza sativa (japonica cultivar-group)
Length = 867822
Score = 44.1 bits (22), Expect = 0.099
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 377 tctcggcgctcttgccccacagcacg 402
||||||||||||| ||||||||||||
Sbjct: 315902 tctcggcgctcttaccccacagcacg 315877
>dbj|AP003052.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:OSJNBa0016I09
Length = 148517
Score = 44.1 bits (22), Expect = 0.099
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 384 gctcttgccccacagcacgaagtagaggcc 413
||||||||||||||||||| |||||||||
Sbjct: 60514 gctcttgccccacagcacgctgtagaggcc 60485
>gb|CH401191.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000028
genomic scaffold, whole genome shotgun sequence
Length = 7678539
Score = 44.1 bits (22), Expect = 0.099
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 377 tctcggcgctcttgccccacagcacg 402
||||||||||||| ||||||||||||
Sbjct: 322267 tctcggcgctcttaccccacagcacg 322242
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 873,114
Number of Sequences: 438736
Number of extensions: 873114
Number of successful extensions: 4633
Number of sequences better than 0.5: 48
Number of HSP's better than 0.5 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4355
Number of HSP's gapped (non-prelim): 278
length of query: 691
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 670
effective length of database: 2,791,206,460
effective search space: 1870108328200
effective search space used: 1870108328200
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)