BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8228901.3.1
(1173 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AP004725.3| Oryza sativa (japonica cultivar-group) geno... 76 5e-011
gb|AACV01013400.1| Oryza sativa (japonica cultivar-group) c... 76 5e-011
ref|NT_079873.2| Oryza sativa (japonica cultivar-group) 76 5e-011
gb|CH401209.1| Oryza sativa (japonica cultivar-group) chrom... 76 5e-011
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 76 5e-011
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 76 5e-011
gb|AU056688.1|AU056688 AU056688 Oryza sativa mature leaf Ni... 70 3e-009
gb|CB662324.1|CB662324 OSJNEd06D21.f OSJNEd Oryza sativa (j... 70 3e-009
gb|CB662353.1|CB662353 OSJNEd06E17.f OSJNEd Oryza sativa (j... 70 3e-009
gb|CB667406.1|CB667406 OSJNEd14L14.f OSJNEd Oryza sativa (j... 70 3e-009
gb|CB668746.1|CB668746 OSJNEd16L22.f OSJNEd Oryza sativa (j... 70 3e-009
gb|CB668747.1|CB668747 OSJNEd16L22.r OSJNEd Oryza sativa (j... 70 3e-009
gb|CF278896.1|CF278896 14ETL--04-P16.b1 Rice etiolated leaf... 70 3e-009
gb|CD670758.1|CD670758 OsMR174 5MT resistant rice mutant cD... 70 3e-009
dbj|AK062130.1| Oryza sativa (japonica cultivar-group) cDNA... 70 3e-009
dbj|AK098988.1| Oryza sativa (japonica cultivar-group) cDNA... 70 3e-009
dbj|AK103538.1| Oryza sativa (japonica cultivar-group) cDNA... 70 3e-009
gb|AU167017.1|AU167017 AU167017 Rice mature leaf Oryza sati... 46 0.043
gb|AU182394.1|AU182394 AU182394 Rice panicle at flowering s... 46 0.043
gb|CF297245.1|CF297245 30DGS--07-P09.b1 Rice leaf plasmid c... 46 0.043
gb|CF307587.1|CF307587 ABF--01-B03.b1 ABF3-overexpressing t... 46 0.043
gb|CF307892.1|CF307892 ABF--01-H21.b1 ABF3-overexpressing t... 46 0.043
gb|CF316735.1|CF316735 HD--06-C13.b1 OsHDAC1-overexpressing... 46 0.043
gb|CF317438.1|CF317438 HD--07-C05.b1 OsHDAC1-overexpressing... 46 0.043
gb|CF317456.1|CF317456 HD--07-C15.b1 OsHDAC1-overexpressing... 46 0.043
gb|CF317460.1|CF317460 HD--07-C17.b1 OsHDAC1-overexpressing... 46 0.043
gb|CF317492.1|CF317492 HD--07-D09.b1 OsHDAC1-overexpressing... 46 0.043
gb|CF317512.1|CF317512 HD--07-D19.b1 OsHDAC1-overexpressing... 46 0.043
gb|CF317534.1|CF317534 HD--07-E07.b1 OsHDAC1-overexpressing... 46 0.043
gb|CF317558.1|CF317558 HD--07-E20.b1 OsHDAC1-overexpressing... 46 0.043
gb|CF317560.1|CF317560 HD--07-E21.b1 OsHDAC1-overexpressing... 46 0.043
gb|CF317576.1|CF317576 HD--07-F05.b1 OsHDAC1-overexpressing... 46 0.043
gb|CF317584.1|CF317584 HD--07-F09.b1 OsHDAC1-overexpressing... 46 0.043
gb|CF317651.1|CF317651 HD--07-G20.b1 OsHDAC1-overexpressing... 46 0.043
gb|CF317683.1|CF317683 HD--07-H12.b1 OsHDAC1-overexpressing... 46 0.043
gb|CF317770.1|CF317770 HD--07-J09.b1 OsHDAC1-overexpressing... 46 0.043
gb|CF317824.1|CF317824 HD--07-K14.b1 OsHDAC1-overexpressing... 46 0.043
gb|CF317826.1|CF317826 HD--07-K15.b1 OsHDAC1-overexpressing... 46 0.043
gb|CF317854.1|CF317854 HD--07-L05.b1 OsHDAC1-overexpressing... 46 0.043
gb|CF317860.1|CF317860 HD--07-L08.b1 OsHDAC1-overexpressing... 46 0.043
gb|CF317908.1|CF317908 HD--07-M10.b1 OsHDAC1-overexpressing... 46 0.043
gb|CF317990.1|CF317990 HD--07-O07.b1 OsHDAC1-overexpressing... 46 0.043
gb|CF318006.1|CF318006 HD--07-O15.b1 OsHDAC1-overexpressing... 46 0.043
gb|CF318010.1|CF318010 HD--07-O17.b1 OsHDAC1-overexpressing... 46 0.043
gb|CF318018.1|CF318018 HD--07-O21.b1 OsHDAC1-overexpressing... 46 0.043
gb|CF334179.1|CF334179 JMT--03-F23.b1 AtJMT-overexpressing ... 46 0.043
gb|CF335816.1|CF335816 JMT--05-K09.b1 AtJMT-overexpressing ... 46 0.043
gb|CF335924.1|CF335924 JMT--05-M17.b1 AtJMT-overexpressing ... 46 0.043
gb|CF337548.1|CF337548 JMT--08-A13.b1 AtJMT-overexpressing ... 46 0.043
gb|CF337587.1|CF337587 JMT--08-B15.b1 AtJMT-overexpressing ... 46 0.043
gb|CF337687.1|CF337687 JMT--08-D22.b1 AtJMT-overexpressing ... 46 0.043
gb|CF337744.1|CF337744 JMT--08-F04.b1 AtJMT-overexpressing ... 46 0.043
gb|CF337748.1|CF337748 JMT--08-F06.b1 AtJMT-overexpressing ... 46 0.043
gb|CF337772.1|CF337772 JMT--08-F18.b1 AtJMT-overexpressing ... 46 0.043
gb|CF337930.1|CF337930 JMT--08-J08.b1 AtJMT-overexpressing ... 46 0.043
gb|CF337938.1|CF337938 JMT--08-J12.b1 AtJMT-overexpressing ... 46 0.043
gb|CF337972.1|CF337972 JMT--08-K06.b1 AtJMT-overexpressing ... 46 0.043
gb|CF337976.1|CF337976 JMT--08-K08.b1 AtJMT-overexpressing ... 46 0.043
gb|CF338082.1|CF338082 JMT--08-M18.b1 AtJMT-overexpressing ... 46 0.043
gb|CF338151.1|CF338151 JMT--08-O08.b1 AtJMT-overexpressing ... 46 0.043
gb|CF338183.1|CF338183 JMT--08-P01.b1 AtJMT-overexpressing ... 46 0.043
gb|BP184498.1|BP184498 BP184498 pNS rice panicle cDNA, flow... 46 0.043
gb|BP184551.1|BP184551 BP184551 pNS rice panicle cDNA, flow... 46 0.043
dbj|AK070415.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.043
dbj|AP004040.3| Oryza sativa (japonica cultivar-group) geno... 46 0.043
gb|AACV01005302.1| Oryza sativa (japonica cultivar-group) c... 46 0.043
ref|XM_467504.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.043
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 46 0.043
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.043
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.043
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 46 0.043
gb|AQ331376.2|AQ331376 nbxb0049I06f CUGI Rice BAC Library O... 44 0.17
dbj|AP004862.3| Oryza sativa (japonica cultivar-group) geno... 44 0.17
gb|AACV01013394.1| Oryza sativa (japonica cultivar-group) c... 44 0.17
gb|AACV01013398.1| Oryza sativa (japonica cultivar-group) c... 44 0.17
>dbj|AP004725.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0412C04
Length = 146849
Score = 75.8 bits (38), Expect = 5e-011
Identities = 65/74 (87%)
Strand = Plus / Minus
Query: 475 ctatatctctggtttgccaggctccttctacactaggatcttccctagcgaaagcgttca 534
|||||||||||| |||||||||||| ||||| |||| | |||||| || |||| |||||
Sbjct: 45827 ctatatctctgggctgccaggctcctactacaataggcttttcccttgccaaagtgttca 45768
Query: 535 ccttttccactctt 548
||||||||||||||
Sbjct: 45767 ccttttccactctt 45754
Score = 69.9 bits (35), Expect = 3e-009
Identities = 71/83 (85%)
Strand = Plus / Minus
Query: 461 gcactgcctccgtgctatatctctggtttgccaggctccttctacactaggatcttccct 520
||||||||||| | |||||||||||| | |||||||||| |||||| ||| | ||||||
Sbjct: 52342 gcactgcctccattctatatctctgggctaccaggctcctactacaccaggcttttccct 52283
Query: 521 agcgaaagcgttcaccttttcca 543
|| |||| ||||||||||||||
Sbjct: 52282 tgccaaagtgttcaccttttcca 52260
Score = 44.1 bits (22), Expect = 0.17
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 350 cttcagttcttcctgaatgacctgcc 375
|||||||||||||||||||| |||||
Sbjct: 26732 cttcagttcttcctgaatgatctgcc 26757
>gb|AACV01013400.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg013400, whole
genome shotgun sequence
Length = 14667
Score = 75.8 bits (38), Expect = 5e-011
Identities = 65/74 (87%)
Strand = Plus / Minus
Query: 475 ctatatctctggtttgccaggctccttctacactaggatcttccctagcgaaagcgttca 534
|||||||||||| |||||||||||| ||||| |||| | |||||| || |||| |||||
Sbjct: 1597 ctatatctctgggctgccaggctcctactacaataggcttttcccttgccaaagtgttca 1538
Query: 535 ccttttccactctt 548
||||||||||||||
Sbjct: 1537 ccttttccactctt 1524
Score = 69.9 bits (35), Expect = 3e-009
Identities = 71/83 (85%)
Strand = Plus / Minus
Query: 461 gcactgcctccgtgctatatctctggtttgccaggctccttctacactaggatcttccct 520
||||||||||| | |||||||||||| | |||||||||| |||||| ||| | ||||||
Sbjct: 8112 gcactgcctccattctatatctctgggctaccaggctcctactacaccaggcttttccct 8053
Query: 521 agcgaaagcgttcaccttttcca 543
|| |||| ||||||||||||||
Sbjct: 8052 tgccaaagtgttcaccttttcca 8030
>ref|NT_079873.2| Oryza sativa (japonica cultivar-group)
Length = 5116111
Score = 75.8 bits (38), Expect = 5e-011
Identities = 65/74 (87%)
Strand = Plus / Minus
Query: 475 ctatatctctggtttgccaggctccttctacactaggatcttccctagcgaaagcgttca 534
|||||||||||| |||||||||||| ||||| |||| | |||||| || |||| |||||
Sbjct: 3177476 ctatatctctgggctgccaggctcctactacaataggcttttcccttgccaaagtgttca 3177417
Query: 535 ccttttccactctt 548
||||||||||||||
Sbjct: 3177416 ccttttccactctt 3177403
Score = 69.9 bits (35), Expect = 3e-009
Identities = 71/83 (85%)
Strand = Plus / Minus
Query: 461 gcactgcctccgtgctatatctctggtttgccaggctccttctacactaggatcttccct 520
||||||||||| | |||||||||||| | |||||||||| |||||| ||| | ||||||
Sbjct: 3183991 gcactgcctccattctatatctctgggctaccaggctcctactacaccaggcttttccct 3183932
Query: 521 agcgaaagcgttcaccttttcca 543
|| |||| ||||||||||||||
Sbjct: 3183931 tgccaaagtgttcaccttttcca 3183909
Score = 44.1 bits (22), Expect = 0.17
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 350 cttcagttcttcctgaatgacctgcc 375
|||||||||||||||||||| |||||
Sbjct: 3158381 cttcagttcttcctgaatgatctgcc 3158406
Score = 44.1 bits (22), Expect = 0.17
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 350 cttcagttcttcctgaatgacctgccgggaaacgacttcaac 391
|||||||||||| | |||||||| ||||| || |||||||||
Sbjct: 3046386 cttcagttcttcttaaatgacctaccgggtaatgacttcaac 3046345
>gb|CH401209.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000046 genomic
scaffold, whole genome shotgun sequence
Length = 8607552
Score = 75.8 bits (38), Expect = 5e-011
Identities = 65/74 (87%)
Strand = Plus / Minus
Query: 475 ctatatctctggtttgccaggctccttctacactaggatcttccctagcgaaagcgttca 534
|||||||||||| |||||||||||| ||||| |||| | |||||| || |||| |||||
Sbjct: 7469394 ctatatctctgggctgccaggctcctactacaataggcttttcccttgccaaagtgttca 7469335
Query: 535 ccttttccactctt 548
||||||||||||||
Sbjct: 7469334 ccttttccactctt 7469321
Score = 69.9 bits (35), Expect = 3e-009
Identities = 71/83 (85%)
Strand = Plus / Minus
Query: 461 gcactgcctccgtgctatatctctggtttgccaggctccttctacactaggatcttccct 520
||||||||||| | |||||||||||| | |||||||||| |||||| ||| | ||||||
Sbjct: 7475909 gcactgcctccattctatatctctgggctaccaggctcctactacaccaggcttttccct 7475850
Query: 521 agcgaaagcgttcaccttttcca 543
|| |||| ||||||||||||||
Sbjct: 7475849 tgccaaagtgttcaccttttcca 7475827
Score = 44.1 bits (22), Expect = 0.17
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 350 cttcagttcttcctgaatgacctgcc 375
|||||||||||||||||||| |||||
Sbjct: 7452958 cttcagttcttcctgaatgatctgcc 7452983
Score = 44.1 bits (22), Expect = 0.17
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 350 cttcagttcttcctgaatgacctgccgggaaacgacttcaac 391
|||||||||||| | |||||||| ||||| || |||||||||
Sbjct: 7344828 cttcagttcttcttaaatgacctaccgggtaatgacttcaac 7344787
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 75.8 bits (38), Expect = 5e-011
Identities = 65/74 (87%)
Strand = Plus / Minus
Query: 475 ctatatctctggtttgccaggctccttctacactaggatcttccctagcgaaagcgttca 534
|||||||||||| |||||||||||| ||||| |||| | |||||| || |||| |||||
Sbjct: 7469394 ctatatctctgggctgccaggctcctactacaataggcttttcccttgccaaagtgttca 7469335
Query: 535 ccttttccactctt 548
||||||||||||||
Sbjct: 7469334 ccttttccactctt 7469321
Score = 69.9 bits (35), Expect = 3e-009
Identities = 71/83 (85%)
Strand = Plus / Minus
Query: 461 gcactgcctccgtgctatatctctggtttgccaggctccttctacactaggatcttccct 520
||||||||||| | |||||||||||| | |||||||||| |||||| ||| | ||||||
Sbjct: 7475909 gcactgcctccattctatatctctgggctaccaggctcctactacaccaggcttttccct 7475850
Query: 521 agcgaaagcgttcaccttttcca 543
|| |||| ||||||||||||||
Sbjct: 7475849 tgccaaagtgttcaccttttcca 7475827
Score = 44.1 bits (22), Expect = 0.17
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 350 cttcagttcttcctgaatgacctgcc 375
|||||||||||||||||||| |||||
Sbjct: 7452958 cttcagttcttcctgaatgatctgcc 7452983
Score = 44.1 bits (22), Expect = 0.17
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 350 cttcagttcttcctgaatgacctgccgggaaacgacttcaac 391
|||||||||||| | |||||||| ||||| || |||||||||
Sbjct: 7344828 cttcagttcttcttaaatgacctaccgggtaatgacttcaac 7344787
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 75.8 bits (38), Expect = 5e-011
Identities = 65/74 (87%)
Strand = Plus / Minus
Query: 475 ctatatctctggtttgccaggctccttctacactaggatcttccctagcgaaagcgttca 534
|||||||||||| |||||||||||| ||||| |||| | |||||| || |||| |||||
Sbjct: 7485896 ctatatctctgggctgccaggctcctactacaataggcttttcccttgccaaagtgttca 7485837
Query: 535 ccttttccactctt 548
||||||||||||||
Sbjct: 7485836 ccttttccactctt 7485823
Score = 69.9 bits (35), Expect = 3e-009
Identities = 71/83 (85%)
Strand = Plus / Minus
Query: 461 gcactgcctccgtgctatatctctggtttgccaggctccttctacactaggatcttccct 520
||||||||||| | |||||||||||| | |||||||||| |||||| ||| | ||||||
Sbjct: 7492411 gcactgcctccattctatatctctgggctaccaggctcctactacaccaggcttttccct 7492352
Query: 521 agcgaaagcgttcaccttttcca 543
|| |||| ||||||||||||||
Sbjct: 7492351 tgccaaagtgttcaccttttcca 7492329
Score = 44.1 bits (22), Expect = 0.17
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 350 cttcagttcttcctgaatgacctgcc 375
|||||||||||||||||||| |||||
Sbjct: 7466801 cttcagttcttcctgaatgatctgcc 7466826
Score = 44.1 bits (22), Expect = 0.17
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 350 cttcagttcttcctgaatgacctgccgggaaacgacttcaac 391
|||||||||||| | |||||||| ||||| || |||||||||
Sbjct: 7354806 cttcagttcttcttaaatgacctaccgggtaatgacttcaac 7354765
>gb|AU056688.1|AU056688 AU056688 Oryza sativa mature leaf Nipponbare Oryza sativa (japonica
cultivar-group) cDNA clone S20791_1A, mRNA sequence
Length = 717
Score = 69.9 bits (35), Expect = 3e-009
Identities = 71/83 (85%)
Strand = Plus / Plus
Query: 461 gcactgcctccgtgctatatctctggtttgccaggctccttctacactaggatcttccct 520
||||||||||| | |||||||||||| | |||||||||| |||||| ||| | ||||||
Sbjct: 154 gcactgcctccattctatatctctgggctaccaggctcctactacaccaggcttttccct 213
Query: 521 agcgaaagcgttcaccttttcca 543
|| |||| ||||||||||||||
Sbjct: 214 tgccaaagtgttcaccttttcca 236
>gb|CB662324.1|CB662324 OSJNEd06D21.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd06D21 5', mRNA sequence
Length = 877
Score = 69.9 bits (35), Expect = 3e-009
Identities = 71/83 (85%)
Strand = Plus / Plus
Query: 461 gcactgcctccgtgctatatctctggtttgccaggctccttctacactaggatcttccct 520
||||||||||| | |||||||||||| | |||||||||| |||||| ||| | ||||||
Sbjct: 425 gcactgcctccattctatatctctgggctaccaggctcctactacaccaggcttttccct 484
Query: 521 agcgaaagcgttcaccttttcca 543
|| |||| ||||||||||||||
Sbjct: 485 tgccaaagtgttcaccttttcca 507
>gb|CB662353.1|CB662353 OSJNEd06E17.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd06E17 5', mRNA sequence
Length = 789
Score = 69.9 bits (35), Expect = 3e-009
Identities = 71/83 (85%)
Strand = Plus / Plus
Query: 461 gcactgcctccgtgctatatctctggtttgccaggctccttctacactaggatcttccct 520
||||||||||| | |||||||||||| | |||||||||| |||||| ||| | ||||||
Sbjct: 435 gcactgcctccattctatatctctgggctaccaggctcctactacaccaggcttttccct 494
Query: 521 agcgaaagcgttcaccttttcca 543
|| |||| ||||||||||||||
Sbjct: 495 tgccaaagtgttcaccttttcca 517
>gb|CB667406.1|CB667406 OSJNEd14L14.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd14L14 5', mRNA sequence
Length = 816
Score = 69.9 bits (35), Expect = 3e-009
Identities = 71/83 (85%)
Strand = Plus / Plus
Query: 461 gcactgcctccgtgctatatctctggtttgccaggctccttctacactaggatcttccct 520
||||||||||| | |||||||||||| | |||||||||| |||||| ||| | ||||||
Sbjct: 436 gcactgcctccattctatatctctgggctaccaggctcctactacaccaggcttttccct 495
Query: 521 agcgaaagcgttcaccttttcca 543
|| |||| ||||||||||||||
Sbjct: 496 tgccaaagtgttcaccttttcca 518
>gb|CB668746.1|CB668746 OSJNEd16L22.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd16L22 5', mRNA sequence
Length = 810
Score = 69.9 bits (35), Expect = 3e-009
Identities = 71/83 (85%)
Strand = Plus / Plus
Query: 461 gcactgcctccgtgctatatctctggtttgccaggctccttctacactaggatcttccct 520
||||||||||| | |||||||||||| | |||||||||| |||||| ||| | ||||||
Sbjct: 427 gcactgcctccattctatatctctgggctaccaggctcctactacaccaggcttttccct 486
Query: 521 agcgaaagcgttcaccttttcca 543
|| |||| ||||||||||||||
Sbjct: 487 tgccaaagtgttcaccttttcca 509
>gb|CB668747.1|CB668747 OSJNEd16L22.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd16L22 3', mRNA sequence
Length = 833
Score = 69.9 bits (35), Expect = 3e-009
Identities = 71/83 (85%)
Strand = Plus / Minus
Query: 461 gcactgcctccgtgctatatctctggtttgccaggctccttctacactaggatcttccct 520
||||||||||| | |||||||||||| | |||||||||| |||||| ||| | ||||||
Sbjct: 709 gcactgcctccattctatatctctgggctaccaggctcctactacaccaggcttttccct 650
Query: 521 agcgaaagcgttcaccttttcca 543
|| |||| ||||||||||||||
Sbjct: 649 tgccaaagtgttcaccttttcca 627
>gb|CF278896.1|CF278896 14ETL--04-P16.b1 Rice etiolated leaf plasmid cDNA library (14ETL)
Oryza sativa (japonica cultivar-group) cDNA clone
14ETL--04-P16, mRNA sequence
Length = 546
Score = 69.9 bits (35), Expect = 3e-009
Identities = 71/83 (85%)
Strand = Plus / Plus
Query: 461 gcactgcctccgtgctatatctctggtttgccaggctccttctacactaggatcttccct 520
||||||||||| | |||||||||||| | |||||||||| |||||| ||| | ||||||
Sbjct: 453 gcactgcctccattctatatctctgggctaccaggctcctactacaccaggcttttccct 512
Query: 521 agcgaaagcgttcaccttttcca 543
|| |||| ||||||||||||||
Sbjct: 513 tgccaaagtgttcaccttttcca 535
>gb|CD670758.1|CD670758 OsMR174 5MT resistant rice mutant cDNA library Oryza sativa
(japonica cultivar-group) cDNA, mRNA sequence
Length = 743
Score = 69.9 bits (35), Expect = 3e-009
Identities = 71/83 (85%)
Strand = Plus / Plus
Query: 461 gcactgcctccgtgctatatctctggtttgccaggctccttctacactaggatcttccct 520
||||||||||| | |||||||||||| | |||||||||| |||||| ||| | ||||||
Sbjct: 118 gcactgcctccattctatatctctgggctaccaggctcctactacaccaggcttttccct 177
Query: 521 agcgaaagcgttcaccttttcca 543
|| |||| ||||||||||||||
Sbjct: 178 tgccaaagtgttcaccttttcca 200
>dbj|AK062130.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-E04, full
insert sequence
Length = 1324
Score = 69.9 bits (35), Expect = 3e-009
Identities = 71/83 (85%)
Strand = Plus / Plus
Query: 461 gcactgcctccgtgctatatctctggtttgccaggctccttctacactaggatcttccct 520
||||||||||| | |||||||||||| | |||||||||| |||||| ||| | ||||||
Sbjct: 455 gcactgcctccattctatatctctgggctaccaggctcctactacaccaggcttttccct 514
Query: 521 agcgaaagcgttcaccttttcca 543
|| |||| ||||||||||||||
Sbjct: 515 tgccaaagtgttcaccttttcca 537
>dbj|AK098988.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013096P21, full
insert sequence
Length = 1321
Score = 69.9 bits (35), Expect = 3e-009
Identities = 71/83 (85%)
Strand = Plus / Plus
Query: 461 gcactgcctccgtgctatatctctggtttgccaggctccttctacactaggatcttccct 520
||||||||||| | |||||||||||| | |||||||||| |||||| ||| | ||||||
Sbjct: 454 gcactgcctccattctatatctctgggctaccaggctcctactacaccaggcttttccct 513
Query: 521 agcgaaagcgttcaccttttcca 543
|| |||| ||||||||||||||
Sbjct: 514 tgccaaagtgttcaccttttcca 536
>dbj|AK103538.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033132B20, full
insert sequence
Length = 1150
Score = 69.9 bits (35), Expect = 3e-009
Identities = 71/83 (85%)
Strand = Plus / Minus
Query: 461 gcactgcctccgtgctatatctctggtttgccaggctccttctacactaggatcttccct 520
||||||||||| | |||||||||||| | |||||||||| |||||| ||| | ||||||
Sbjct: 490 gcactgcctccattctatatctctgggctaccaggctcctactacaccaggcttttccct 431
Query: 521 agcgaaagcgttcaccttttcca 543
|| |||| ||||||||||||||
Sbjct: 430 tgccaaagtgttcaccttttcca 408
>gb|AU167017.1|AU167017 AU167017 Rice mature leaf Oryza sativa (japonica cultivar-group)
cDNA clone S20748, mRNA sequence
Length = 452
Score = 46.1 bits (23), Expect = 0.043
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 230 atggtcgtggccgacttaggctgctcatcggggcctaacacactgcgcttcatctccgag 289
||||| ||||||||| | |||||||| |||||||| ||||| || | | || ||||||||
Sbjct: 285 atggtggtggccgacctcggctgctcgtcggggcccaacactctcctcgtcgtctccgag 344
Query: 290 gtg 292
|||
Sbjct: 345 gtg 347
>gb|AU182394.1|AU182394 AU182394 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E2650, mRNA sequence
Length = 442
Score = 46.1 bits (23), Expect = 0.043
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 230 atggtcgtggccgacttaggctgctcatcggggcctaacacactgcgcttcatctccgag 289
||||| ||||||||| | |||||||| |||||||| ||||| || | | || ||||||||
Sbjct: 287 atggtggtggccgacctcggctgctcgtcggggcccaacactctcctcgtcgtctccgag 346
Query: 290 gtg 292
|||
Sbjct: 347 gtg 349
>gb|CF297245.1|CF297245 30DGS--07-P09.b1 Rice leaf plasmid cDNA library I (30DGS) Oryza
sativa (japonica cultivar-group) cDNA clone
30DGS--07-P09, mRNA sequence
Length = 281
Score = 46.1 bits (23), Expect = 0.043
Identities = 53/63 (84%)
Strand = Plus / Minus
Query: 230 atggtcgtggccgacttaggctgctcatcggggcctaacacactgcgcttcatctccgag 289
||||| ||||||||| | |||||||| |||||||| ||||| || | | || ||||||||
Sbjct: 108 atggtggtggccgacctcggctgctcgtcggggcccaacactctcctcgtcgtctccgag 49
Query: 290 gtg 292
|||
Sbjct: 48 gtg 46
>gb|CF307587.1|CF307587 ABF--01-B03.b1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--01-B03, mRNA sequence
Length = 503
Score = 46.1 bits (23), Expect = 0.043
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 230 atggtcgtggccgacttaggctgctcatcggggcctaacacactgcgcttcatctccgag 289
||||| ||||||||| | |||||||| |||||||| ||||| || | | || ||||||||
Sbjct: 294 atggtggtggccgacctcggctgctcgtcggggcccaacactctcctcgtcgtctccgag 353
Query: 290 gtg 292
|||
Sbjct: 354 gtg 356
>gb|CF307892.1|CF307892 ABF--01-H21.b1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--01-H21, mRNA sequence
Length = 574
Score = 46.1 bits (23), Expect = 0.043
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 230 atggtcgtggccgacttaggctgctcatcggggcctaacacactgcgcttcatctccgag 289
||||| ||||||||| | |||||||| |||||||| ||||| || | | || ||||||||
Sbjct: 294 atggtggtggccgacctcggctgctcgtcggggcccaacactctcctcgtcgtctccgag 353
Query: 290 gtg 292
|||
Sbjct: 354 gtg 356
>gb|CF316735.1|CF316735 HD--06-C13.b1 OsHDAC1-overexpressing transgenic rice plasmid cDNA
library (HD) Oryza sativa (japonica cultivar-group) cDNA
clone HD--06-C13, mRNA sequence
Length = 291
Score = 46.1 bits (23), Expect = 0.043
Identities = 53/63 (84%)
Strand = Plus / Minus
Query: 230 atggtcgtggccgacttaggctgctcatcggggcctaacacactgcgcttcatctccgag 289
||||| ||||||||| | |||||||| |||||||| ||||| || | | || ||||||||
Sbjct: 118 atggtggtggccgacctcggctgctcgtcggggcccaacactctcctcgtcgtctccgag 59
Query: 290 gtg 292
|||
Sbjct: 58 gtg 56
>gb|CF317438.1|CF317438 HD--07-C05.b1 OsHDAC1-overexpressing transgenic rice plasmid cDNA
library (HD) Oryza sativa (japonica cultivar-group) cDNA
clone HD--07-C05, mRNA sequence
Length = 367
Score = 46.1 bits (23), Expect = 0.043
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 230 atggtcgtggccgacttaggctgctcatcggggcctaacacactgcgcttcatctccgag 289
||||| ||||||||| | |||||||| |||||||| ||||| || | | || ||||||||
Sbjct: 296 atggtggtggccgacctcggctgctcgtcggggcccaacactctcctcgtcgtctccgag 355
Query: 290 gtg 292
|||
Sbjct: 356 gtg 358
>gb|CF317456.1|CF317456 HD--07-C15.b1 OsHDAC1-overexpressing transgenic rice plasmid cDNA
library (HD) Oryza sativa (japonica cultivar-group) cDNA
clone HD--07-C15, mRNA sequence
Length = 541
Score = 46.1 bits (23), Expect = 0.043
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 230 atggtcgtggccgacttaggctgctcatcggggcctaacacactgcgcttcatctccgag 289
||||| ||||||||| | |||||||| |||||||| ||||| || | | || ||||||||
Sbjct: 295 atggtggtggccgacctcggctgctcgtcggggcccaacactctcctcgtcgtctccgag 354
Query: 290 gtg 292
|||
Sbjct: 355 gtg 357
>gb|CF317460.1|CF317460 HD--07-C17.b1 OsHDAC1-overexpressing transgenic rice plasmid cDNA
library (HD) Oryza sativa (japonica cultivar-group) cDNA
clone HD--07-C17, mRNA sequence
Length = 567
Score = 46.1 bits (23), Expect = 0.043
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 230 atggtcgtggccgacttaggctgctcatcggggcctaacacactgcgcttcatctccgag 289
||||| ||||||||| | |||||||| |||||||| ||||| || | | || ||||||||
Sbjct: 295 atggtggtggccgacctcggctgctcgtcggggcccaacactctcctcgtcgtctccgag 354
Query: 290 gtg 292
|||
Sbjct: 355 gtg 357
>gb|CF317492.1|CF317492 HD--07-D09.b1 OsHDAC1-overexpressing transgenic rice plasmid cDNA
library (HD) Oryza sativa (japonica cultivar-group) cDNA
clone HD--07-D09, mRNA sequence
Length = 449
Score = 46.1 bits (23), Expect = 0.043
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 230 atggtcgtggccgacttaggctgctcatcggggcctaacacactgcgcttcatctccgag 289
||||| ||||||||| | |||||||| |||||||| ||||| || | | || ||||||||
Sbjct: 296 atggtggtggccgacctcggctgctcgtcggggcccaacactctcctcgtcgtctccgag 355
Query: 290 gtg 292
|||
Sbjct: 356 gtg 358
>gb|CF317512.1|CF317512 HD--07-D19.b1 OsHDAC1-overexpressing transgenic rice plasmid cDNA
library (HD) Oryza sativa (japonica cultivar-group) cDNA
clone HD--07-D19, mRNA sequence
Length = 533
Score = 46.1 bits (23), Expect = 0.043
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 230 atggtcgtggccgacttaggctgctcatcggggcctaacacactgcgcttcatctccgag 289
||||| ||||||||| | |||||||| |||||||| ||||| || | | || ||||||||
Sbjct: 295 atggtggtggccgacctcggctgctcgtcggggcccaacactctcctcgtcgtctccgag 354
Query: 290 gtg 292
|||
Sbjct: 355 gtg 357
>gb|CF317534.1|CF317534 HD--07-E07.b1 OsHDAC1-overexpressing transgenic rice plasmid cDNA
library (HD) Oryza sativa (japonica cultivar-group) cDNA
clone HD--07-E07, mRNA sequence
Length = 513
Score = 46.1 bits (23), Expect = 0.043
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 230 atggtcgtggccgacttaggctgctcatcggggcctaacacactgcgcttcatctccgag 289
||||| ||||||||| | |||||||| |||||||| ||||| || | | || ||||||||
Sbjct: 296 atggtggtggccgacctcggctgctcgtcggggcccaacactctcctcgtcgtctccgag 355
Query: 290 gtg 292
|||
Sbjct: 356 gtg 358
>gb|CF317558.1|CF317558 HD--07-E20.b1 OsHDAC1-overexpressing transgenic rice plasmid cDNA
library (HD) Oryza sativa (japonica cultivar-group) cDNA
clone HD--07-E20, mRNA sequence
Length = 576
Score = 46.1 bits (23), Expect = 0.043
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 230 atggtcgtggccgacttaggctgctcatcggggcctaacacactgcgcttcatctccgag 289
||||| ||||||||| | |||||||| |||||||| ||||| || | | || ||||||||
Sbjct: 296 atggtggtggccgacctcggctgctcgtcggggcccaacactctcctcgtcgtctccgag 355
Query: 290 gtg 292
|||
Sbjct: 356 gtg 358
>gb|CF317560.1|CF317560 HD--07-E21.b1 OsHDAC1-overexpressing transgenic rice plasmid cDNA
library (HD) Oryza sativa (japonica cultivar-group) cDNA
clone HD--07-E21, mRNA sequence
Length = 502
Score = 46.1 bits (23), Expect = 0.043
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 230 atggtcgtggccgacttaggctgctcatcggggcctaacacactgcgcttcatctccgag 289
||||| ||||||||| | |||||||| |||||||| ||||| || | | || ||||||||
Sbjct: 296 atggtggtggccgacctcggctgctcgtcggggcccaacactctcctcgtcgtctccgag 355
Query: 290 gtg 292
|||
Sbjct: 356 gtg 358
>gb|CF317576.1|CF317576 HD--07-F05.b1 OsHDAC1-overexpressing transgenic rice plasmid cDNA
library (HD) Oryza sativa (japonica cultivar-group) cDNA
clone HD--07-F05, mRNA sequence
Length = 625
Score = 46.1 bits (23), Expect = 0.043
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 230 atggtcgtggccgacttaggctgctcatcggggcctaacacactgcgcttcatctccgag 289
||||| ||||||||| | |||||||| |||||||| ||||| || | | || ||||||||
Sbjct: 295 atggtggtggccgacctcggctgctcgtcggggcccaacactctcctcgtcgtctccgag 354
Query: 290 gtg 292
|||
Sbjct: 355 gtg 357
>gb|CF317584.1|CF317584 HD--07-F09.b1 OsHDAC1-overexpressing transgenic rice plasmid cDNA
library (HD) Oryza sativa (japonica cultivar-group) cDNA
clone HD--07-F09, mRNA sequence
Length = 577
Score = 46.1 bits (23), Expect = 0.043
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 230 atggtcgtggccgacttaggctgctcatcggggcctaacacactgcgcttcatctccgag 289
||||| ||||||||| | |||||||| |||||||| ||||| || | | || ||||||||
Sbjct: 295 atggtggtggccgacctcggctgctcgtcggggcccaacactctcctcgtcgtctccgag 354
Query: 290 gtg 292
|||
Sbjct: 355 gtg 357
>gb|CF317651.1|CF317651 HD--07-G20.b1 OsHDAC1-overexpressing transgenic rice plasmid cDNA
library (HD) Oryza sativa (japonica cultivar-group) cDNA
clone HD--07-G20, mRNA sequence
Length = 416
Score = 46.1 bits (23), Expect = 0.043
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 230 atggtcgtggccgacttaggctgctcatcggggcctaacacactgcgcttcatctccgag 289
||||| ||||||||| | |||||||| |||||||| ||||| || | | || ||||||||
Sbjct: 295 atggtggtggccgacctcggctgctcgtcggggcccaacactctcctcgtcgtctccgag 354
Query: 290 gtg 292
|||
Sbjct: 355 gtg 357
>gb|CF317683.1|CF317683 HD--07-H12.b1 OsHDAC1-overexpressing transgenic rice plasmid cDNA
library (HD) Oryza sativa (japonica cultivar-group) cDNA
clone HD--07-H12, mRNA sequence
Length = 415
Score = 46.1 bits (23), Expect = 0.043
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 230 atggtcgtggccgacttaggctgctcatcggggcctaacacactgcgcttcatctccgag 289
||||| ||||||||| | |||||||| |||||||| ||||| || | | || ||||||||
Sbjct: 295 atggtggtggccgacctcggctgctcgtcggggcccaacactctcctcgtcgtctccgag 354
Query: 290 gtg 292
|||
Sbjct: 355 gtg 357
>gb|CF317770.1|CF317770 HD--07-J09.b1 OsHDAC1-overexpressing transgenic rice plasmid cDNA
library (HD) Oryza sativa (japonica cultivar-group) cDNA
clone HD--07-J09, mRNA sequence
Length = 479
Score = 46.1 bits (23), Expect = 0.043
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 230 atggtcgtggccgacttaggctgctcatcggggcctaacacactgcgcttcatctccgag 289
||||| ||||||||| | |||||||| |||||||| ||||| || | | || ||||||||
Sbjct: 294 atggtggtggccgacctcggctgctcgtcggggcccaacactctcctcgtcgtctccgag 353
Query: 290 gtg 292
|||
Sbjct: 354 gtg 356
>gb|CF317824.1|CF317824 HD--07-K14.b1 OsHDAC1-overexpressing transgenic rice plasmid cDNA
library (HD) Oryza sativa (japonica cultivar-group) cDNA
clone HD--07-K14, mRNA sequence
Length = 415
Score = 46.1 bits (23), Expect = 0.043
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 230 atggtcgtggccgacttaggctgctcatcggggcctaacacactgcgcttcatctccgag 289
||||| ||||||||| | |||||||| |||||||| ||||| || | | || ||||||||
Sbjct: 295 atggtggtggccgacctcggctgctcgtcggggcccaacactctcctcgtcgtctccgag 354
Query: 290 gtg 292
|||
Sbjct: 355 gtg 357
>gb|CF317826.1|CF317826 HD--07-K15.b1 OsHDAC1-overexpressing transgenic rice plasmid cDNA
library (HD) Oryza sativa (japonica cultivar-group) cDNA
clone HD--07-K15, mRNA sequence
Length = 538
Score = 46.1 bits (23), Expect = 0.043
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 230 atggtcgtggccgacttaggctgctcatcggggcctaacacactgcgcttcatctccgag 289
||||| ||||||||| | |||||||| |||||||| ||||| || | | || ||||||||
Sbjct: 314 atggtggtggccgacctcggctgctcgtcggggcccaacactctcctcgtcgtctccgag 373
Query: 290 gtg 292
|||
Sbjct: 374 gtg 376
>gb|CF317854.1|CF317854 HD--07-L05.b1 OsHDAC1-overexpressing transgenic rice plasmid cDNA
library (HD) Oryza sativa (japonica cultivar-group) cDNA
clone HD--07-L05, mRNA sequence
Length = 644
Score = 46.1 bits (23), Expect = 0.043
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 230 atggtcgtggccgacttaggctgctcatcggggcctaacacactgcgcttcatctccgag 289
||||| ||||||||| | |||||||| |||||||| ||||| || | | || ||||||||
Sbjct: 313 atggtggtggccgacctcggctgctcgtcggggcccaacactctcctcgtcgtctccgag 372
Query: 290 gtg 292
|||
Sbjct: 373 gtg 375
>gb|CF317860.1|CF317860 HD--07-L08.b1 OsHDAC1-overexpressing transgenic rice plasmid cDNA
library (HD) Oryza sativa (japonica cultivar-group) cDNA
clone HD--07-L08, mRNA sequence
Length = 510
Score = 46.1 bits (23), Expect = 0.043
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 230 atggtcgtggccgacttaggctgctcatcggggcctaacacactgcgcttcatctccgag 289
||||| ||||||||| | |||||||| |||||||| ||||| || | | || ||||||||
Sbjct: 295 atggtggtggccgacctcggctgctcgtcggggcccaacactctcctcgtcgtctccgag 354
Query: 290 gtg 292
|||
Sbjct: 355 gtg 357
>gb|CF317908.1|CF317908 HD--07-M10.b1 OsHDAC1-overexpressing transgenic rice plasmid cDNA
library (HD) Oryza sativa (japonica cultivar-group) cDNA
clone HD--07-M10, mRNA sequence
Length = 416
Score = 46.1 bits (23), Expect = 0.043
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 230 atggtcgtggccgacttaggctgctcatcggggcctaacacactgcgcttcatctccgag 289
||||| ||||||||| | |||||||| |||||||| ||||| || | | || ||||||||
Sbjct: 296 atggtggtggccgacctcggctgctcgtcggggcccaacactctcctcgtcgtctccgag 355
Query: 290 gtg 292
|||
Sbjct: 356 gtg 358
>gb|CF317990.1|CF317990 HD--07-O07.b1 OsHDAC1-overexpressing transgenic rice plasmid cDNA
library (HD) Oryza sativa (japonica cultivar-group) cDNA
clone HD--07-O07, mRNA sequence
Length = 500
Score = 46.1 bits (23), Expect = 0.043
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 230 atggtcgtggccgacttaggctgctcatcggggcctaacacactgcgcttcatctccgag 289
||||| ||||||||| | |||||||| |||||||| ||||| || | | || ||||||||
Sbjct: 295 atggtggtggccgacctcggctgctcgtcggggcccaacactctcctcgtcgtctccgag 354
Query: 290 gtg 292
|||
Sbjct: 355 gtg 357
>gb|CF318006.1|CF318006 HD--07-O15.b1 OsHDAC1-overexpressing transgenic rice plasmid cDNA
library (HD) Oryza sativa (japonica cultivar-group) cDNA
clone HD--07-O15, mRNA sequence
Length = 508
Score = 46.1 bits (23), Expect = 0.043
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 230 atggtcgtggccgacttaggctgctcatcggggcctaacacactgcgcttcatctccgag 289
||||| ||||||||| | |||||||| |||||||| ||||| || | | || ||||||||
Sbjct: 296 atggtggtggccgacctcggctgctcgtcggggcccaacactctcctcgtcgtctccgag 355
Query: 290 gtg 292
|||
Sbjct: 356 gtg 358
>gb|CF318010.1|CF318010 HD--07-O17.b1 OsHDAC1-overexpressing transgenic rice plasmid cDNA
library (HD) Oryza sativa (japonica cultivar-group) cDNA
clone HD--07-O17, mRNA sequence
Length = 518
Score = 46.1 bits (23), Expect = 0.043
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 230 atggtcgtggccgacttaggctgctcatcggggcctaacacactgcgcttcatctccgag 289
||||| ||||||||| | |||||||| |||||||| ||||| || | | || ||||||||
Sbjct: 295 atggtggtggccgacctcggctgctcgtcggggcccaacactctcctcgtcgtctccgag 354
Query: 290 gtg 292
|||
Sbjct: 355 gtg 357
>gb|CF318018.1|CF318018 HD--07-O21.b1 OsHDAC1-overexpressing transgenic rice plasmid cDNA
library (HD) Oryza sativa (japonica cultivar-group) cDNA
clone HD--07-O21, mRNA sequence
Length = 553
Score = 46.1 bits (23), Expect = 0.043
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 230 atggtcgtggccgacttaggctgctcatcggggcctaacacactgcgcttcatctccgag 289
||||| ||||||||| | |||||||| |||||||| ||||| || | | || ||||||||
Sbjct: 313 atggtggtggccgacctcggctgctcgtcggggcccaacactctcctcgtcgtctccgag 372
Query: 290 gtg 292
|||
Sbjct: 373 gtg 375
>gb|CF334179.1|CF334179 JMT--03-F23.b1 AtJMT-overexpressing transgenic rice plasmid cDNA
library (JMT) Oryza sativa (japonica cultivar-group)
cDNA clone JMT--03-F23, mRNA sequence
Length = 512
Score = 46.1 bits (23), Expect = 0.043
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 230 atggtcgtggccgacttaggctgctcatcggggcctaacacactgcgcttcatctccgag 289
||||| ||||||||| | |||||||| |||||||| ||||| || | | || ||||||||
Sbjct: 271 atggtggtggccgacctcggctgctcgtcggggcccaacactctcctcgtcgtctccgag 330
Query: 290 gtg 292
|||
Sbjct: 331 gtg 333
>gb|CF335816.1|CF335816 JMT--05-K09.b1 AtJMT-overexpressing transgenic rice plasmid cDNA
library (JMT) Oryza sativa (japonica cultivar-group)
cDNA clone JMT--05-K09, mRNA sequence
Length = 557
Score = 46.1 bits (23), Expect = 0.043
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 230 atggtcgtggccgacttaggctgctcatcggggcctaacacactgcgcttcatctccgag 289
||||| ||||||||| | |||||||| |||||||| ||||| || | | || ||||||||
Sbjct: 303 atggtggtggccgacctcggctgctcgtcggggcccaacactctcctcgtcgtctccgag 362
Query: 290 gtg 292
|||
Sbjct: 363 gtg 365
>gb|CF335924.1|CF335924 JMT--05-M17.b1 AtJMT-overexpressing transgenic rice plasmid cDNA
library (JMT) Oryza sativa (japonica cultivar-group)
cDNA clone JMT--05-M17, mRNA sequence
Length = 704
Score = 46.1 bits (23), Expect = 0.043
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 230 atggtcgtggccgacttaggctgctcatcggggcctaacacactgcgcttcatctccgag 289
||||| ||||||||| | |||||||| |||||||| ||||| || | | || ||||||||
Sbjct: 319 atggtggtggccgacctcggctgctcgtcggggcccaacactctcctcgtcgtctccgag 378
Query: 290 gtg 292
|||
Sbjct: 379 gtg 381
>gb|CF337548.1|CF337548 JMT--08-A13.b1 AtJMT-overexpressing transgenic rice plasmid cDNA
library (JMT) Oryza sativa (japonica cultivar-group)
cDNA clone JMT--08-A13, mRNA sequence
Length = 645
Score = 46.1 bits (23), Expect = 0.043
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 230 atggtcgtggccgacttaggctgctcatcggggcctaacacactgcgcttcatctccgag 289
||||| ||||||||| | |||||||| |||||||| ||||| || | | || ||||||||
Sbjct: 317 atggtggtggccgacctcggctgctcgtcggggcccaacactctcctcgtcgtctccgag 376
Query: 290 gtg 292
|||
Sbjct: 377 gtg 379
>gb|CF337587.1|CF337587 JMT--08-B15.b1 AtJMT-overexpressing transgenic rice plasmid cDNA
library (JMT) Oryza sativa (japonica cultivar-group)
cDNA clone JMT--08-B15, mRNA sequence
Length = 710
Score = 46.1 bits (23), Expect = 0.043
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 230 atggtcgtggccgacttaggctgctcatcggggcctaacacactgcgcttcatctccgag 289
||||| ||||||||| | |||||||| |||||||| ||||| || | | || ||||||||
Sbjct: 316 atggtggtggccgacctcggctgctcgtcggggcccaacactctcctcgtcgtctccgag 375
Query: 290 gtg 292
|||
Sbjct: 376 gtg 378
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,027,224
Number of Sequences: 438736
Number of extensions: 2027224
Number of successful extensions: 14907
Number of sequences better than 0.5: 75
Number of HSP's better than 0.5 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14536
Number of HSP's gapped (non-prelim): 371
length of query: 1173
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1152
effective length of database: 2,791,206,460
effective search space: 3215469841920
effective search space used: 3215469841920
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)