BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8228841.2.1
(621 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AU029514.1|AU029514 AU029514 Rice panicle shorter than 3... 56 2e-005
gb|AU029546.1|AU029546 AU029546 Rice panicle shorter than 3... 56 2e-005
gb|AU029665.1|AU029665 AU029665 Rice panicle shorter than 3... 56 2e-005
gb|AU033138.1|AU033138 AU033138 Rice shoot Oryza sativa (ja... 56 2e-005
gb|AU092227.1|AU092227 AU092227 Rice callus Oryza sativa (j... 56 2e-005
gb|AU092238.1|AU092238 AU092238 Rice callus Oryza sativa (j... 56 2e-005
gb|AU093932.1|AU093932 AU093932 Rice panicle at flowering s... 56 2e-005
gb|AU095510.1|AU095510 AU095510 Rice root Oryza sativa (jap... 56 2e-005
gb|AU162859.1|AU162859 AU162859 Rice green shoot Oryza sati... 56 2e-005
gb|CA756464.1|CA756464 BR030043000_PLATE_A11_81_084.ab1 OA ... 56 2e-005
gb|CA999001.1|CA999001 S234M_A05 Rice cold stress germinati... 56 2e-005
gb|CA999930.1|CA999930 S234L_B03 Rice cold stress germinati... 56 2e-005
gb|CB000637.1|CB000637 S345Q_F09 Rice cold stress germinati... 56 2e-005
gb|CB643190.1|CB643190 OSJNEb03L22.r OSJNEb Oryza sativa (j... 56 2e-005
gb|CB645997.1|CB645997 OSJNEb08C01.r OSJNEb Oryza sativa (j... 56 2e-005
gb|CB654046.1|CB654046 OSJNEc05K05.r OSJNEc Oryza sativa (j... 56 2e-005
gb|CB656093.1|CB656093 OSJNEc10A12.f OSJNEc Oryza sativa (j... 56 2e-005
gb|CB663624.1|CB663624 OSJNEd08N06.r OSJNEd Oryza sativa (j... 56 2e-005
gb|CB663658.1|CB663658 OSJNEd08O07.r OSJNEd Oryza sativa (j... 56 2e-005
gb|CB668192.1|CB668192 OSJNEd15O19.r OSJNEd Oryza sativa (j... 56 2e-005
gb|CB668312.1|CB668312 OSJNEd16B19.r OSJNEd Oryza sativa (j... 56 2e-005
gb|CB674933.1|CB674933 OSJNEe10E15.r OSJNEe Oryza sativa (j... 56 2e-005
gb|CV731445.1|CV731445 FLO--05-H19.b1 Rice flower lambda ph... 56 2e-005
gb|U28047.2|OSU28047 Oryza sativa beta-glucosidase mRNA, co... 56 2e-005
dbj|AK059920.1| Oryza sativa (japonica cultivar-group) cDNA... 56 2e-005
dbj|AK100165.1| Oryza sativa (japonica cultivar-group) cDNA... 56 2e-005
dbj|AK103027.1| Oryza sativa (japonica cultivar-group) cDNA... 56 2e-005
gb|AC133334.8| Oryza sativa chromosome 3 BAC OSJNBa0004L11 ... 56 2e-005
dbj|AK105026.2| Oryza sativa (japonica cultivar-group) cDNA... 56 2e-005
gb|AACV01007733.1| Oryza sativa (japonica cultivar-group) c... 56 2e-005
ref|XM_469436.1| Oryza sativa (japonica cultivar-group), mRNA 56 2e-005
ref|NT_079916.2| Oryza sativa (japonica cultivar-group) 56 2e-005
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 56 2e-005
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 56 2e-005
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 56 2e-005
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 56 2e-005
gb|AC091670.7| Oryza sativa (japonica cultivar-group) chrom... 56 2e-005
gb|AU066086.2|AU066086 AU066086 Rice shoot Oryza sativa (ja... 50 0.001
gb|AU222984.1|AU222984 AU222984 Rice shoot Oryza sativa (ja... 50 0.001
gb|CB642724.1|CB642724 OSJNEb03A24.r OSJNEb Oryza sativa (j... 48 0.006
gb|CB642882.1|CB642882 OSJNEb03E17.r OSJNEb Oryza sativa (j... 48 0.006
gb|CB673496.1|CB673496 OSJNEe08A17.r OSJNEe Oryza sativa (j... 48 0.006
gb|AY129294.1| Oryza sativa (japonica cultivar-group) beta-... 48 0.006
dbj|AK119546.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.006
gb|AC146619.1| Genomic sequence for Oryza sativa, Nipponbar... 48 0.006
gb|AACV01006096.1| Oryza sativa (japonica cultivar-group) c... 48 0.006
ref|NT_107189.1| Oryza sativa (japonica cultivar-group) 48 0.006
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.006
gb|CB648778.1|CB648778 OSJNEb12F12.r OSJNEb Oryza sativa (j... 46 0.022
gb|CV731446.1|CV731446 FLO--05-H19.g1 Rice flower lambda ph... 46 0.022
dbj|AK060988.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.022
dbj|AK069177.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.022
gb|AACV01001283.1| Oryza sativa (japonica cultivar-group) c... 46 0.022
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 46 0.022
ref|NM_193731.1| Oryza sativa (japonica cultivar-group), p... 46 0.022
ref|NT_079926.2| Oryza sativa (japonica cultivar-group) 46 0.022
dbj|AP003435.2| Oryza sativa (japonica cultivar-group) geno... 46 0.022
dbj|AP003217.3| Oryza sativa (japonica cultivar-group) geno... 46 0.022
gb|CH401166.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.022
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.022
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 46 0.022
dbj|AG214794.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.089
gb|AU033196.1|AU033196 AU033196 Rice shoot Oryza sativa (ja... 44 0.089
gb|CB651199.1|CB651199 OSJNEb16B05.r OSJNEb Oryza sativa (j... 42 0.35
gb|CB672844.1|CB672844 OSJNEe07B16.r OSJNEe Oryza sativa (j... 42 0.35
gb|CF309590.1|CF309590 ABF--03-N08.g1 ABF3-overexpressing t... 42 0.35
emb|AL606591.1|OSJN00030 Oryza sativa (japonica cultivar-gr... 42 0.35
dbj|AK062029.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.35
dbj|AK065793.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.35
gb|AACV01010847.1| Oryza sativa (japonica cultivar-group) c... 42 0.35
ref|XM_472851.1| Oryza sativa (japonica cultivar-group), p... 42 0.35
ref|NT_079863.2| Oryza sativa (japonica cultivar-group) 42 0.35
gb|CH401191.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.35
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.35
emb|AL731582.2|OSJN00232 Oryza sativa genomic DNA, chromoso... 42 0.35
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 42 0.35
>gb|AU029514.1|AU029514 AU029514 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E31025_7Z, mRNA sequence
Length = 422
Score = 56.0 bits (28), Expect = 2e-005
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 242 tggccacttcacctggtctctgctggacaacttcgagtgg 281
|||| ||||| |||||||||| ||||||||||||||||||
Sbjct: 21 tggctacttcgcctggtctctcctggacaacttcgagtgg 60
>gb|AU029546.1|AU029546 AU029546 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E31058_1Z, mRNA sequence
Length = 394
Score = 56.0 bits (28), Expect = 2e-005
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 242 tggccacttcacctggtctctgctggacaacttcgagtgg 281
|||| ||||| |||||||||| ||||||||||||||||||
Sbjct: 84 tggctacttcgcctggtctctcctggacaacttcgagtgg 123
>gb|AU029665.1|AU029665 AU029665 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E31217_1Z, mRNA sequence
Length = 356
Score = 56.0 bits (28), Expect = 2e-005
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 242 tggccacttcacctggtctctgctggacaacttcgagtgg 281
|||| ||||| |||||||||| ||||||||||||||||||
Sbjct: 46 tggctacttcgcctggtctctcctggacaacttcgagtgg 85
>gb|AU033138.1|AU033138 AU033138 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S3977_2Z, mRNA sequence
Length = 493
Score = 56.0 bits (28), Expect = 2e-005
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 242 tggccacttcacctggtctctgctggacaacttcgagtgg 281
|||| ||||| |||||||||| ||||||||||||||||||
Sbjct: 176 tggctacttcgcctggtctctcctggacaacttcgagtgg 215
>gb|AU092227.1|AU092227 AU092227 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C11453, mRNA sequence
Length = 623
Score = 56.0 bits (28), Expect = 2e-005
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 242 tggccacttcacctggtctctgctggacaacttcgagtgg 281
|||| ||||| |||||||||| ||||||||||||||||||
Sbjct: 164 tggctacttcgcctggtctctcctggacaacttcgagtgg 203
>gb|AU092238.1|AU092238 AU092238 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C11496, mRNA sequence
Length = 705
Score = 56.0 bits (28), Expect = 2e-005
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 242 tggccacttcacctggtctctgctggacaacttcgagtgg 281
|||| ||||| |||||||||| ||||||||||||||||||
Sbjct: 189 tggctacttcgcctggtctctcctggacaacttcgagtgg 228
>gb|AU093932.1|AU093932 AU093932 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E1350, mRNA sequence
Length = 709
Score = 56.0 bits (28), Expect = 2e-005
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 242 tggccacttcacctggtctctgctggacaacttcgagtgg 281
|||| ||||| |||||||||| ||||||||||||||||||
Sbjct: 297 tggctacttcgcctggtctctcctggacaacttcgagtgg 336
>gb|AU095510.1|AU095510 AU095510 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R3421, mRNA sequence
Length = 716
Score = 56.0 bits (28), Expect = 2e-005
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 242 tggccacttcacctggtctctgctggacaacttcgagtgg 281
|||| ||||| |||||||||| ||||||||||||||||||
Sbjct: 301 tggctacttcgcctggtctctcctggacaacttcgagtgg 340
>gb|AU162859.1|AU162859 AU162859 Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA clone S12223, mRNA sequence
Length = 372
Score = 56.0 bits (28), Expect = 2e-005
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 242 tggccacttcacctggtctctgctggacaacttcgagtgg 281
|||| ||||| |||||||||| ||||||||||||||||||
Sbjct: 57 tggctacttcgcctggtctctcctggacaacttcgagtgg 96
>gb|CA756464.1|CA756464 BR030043000_PLATE_A11_81_084.ab1 OA Oryza sativa (japonica
cultivar-group) cDNA clone
BR030043000_PLATE_A11_81_084.ab1 similar to
beta-glucosidase (EC 3.2.1.21), chloroplast - rice, mRNA
sequence
Length = 600
Score = 56.0 bits (28), Expect = 2e-005
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 242 tggccacttcacctggtctctgctggacaacttcgagtgg 281
|||| ||||| |||||||||| ||||||||||||||||||
Sbjct: 160 tggctacttcgcctggtctctcctggacaacttcgagtgg 199
>gb|CA999001.1|CA999001 S234M_A05 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 667
Score = 56.0 bits (28), Expect = 2e-005
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 242 tggccacttcacctggtctctgctggacaacttcgagtgg 281
|||| ||||| |||||||||| ||||||||||||||||||
Sbjct: 625 tggctacttcgcctggtctctcctggacaacttcgagtgg 664
>gb|CA999930.1|CA999930 S234L_B03 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 679
Score = 56.0 bits (28), Expect = 2e-005
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 242 tggccacttcacctggtctctgctggacaacttcgagtgg 281
|||| ||||| |||||||||| ||||||||||||||||||
Sbjct: 626 tggctacttcgcctggtctctcctggacaacttcgagtgg 665
>gb|CB000637.1|CB000637 S345Q_F09 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 668
Score = 56.0 bits (28), Expect = 2e-005
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 242 tggccacttcacctggtctctgctggacaacttcgagtgg 281
|||| ||||| |||||||||| ||||||||||||||||||
Sbjct: 625 tggctacttcgcctggtctctcctggacaacttcgagtgg 664
>gb|CB643190.1|CB643190 OSJNEb03L22.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb03L22 3', mRNA sequence
Length = 813
Score = 56.0 bits (28), Expect = 2e-005
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 242 tggccacttcacctggtctctgctggacaacttcgagtgg 281
|||| ||||| |||||||||| ||||||||||||||||||
Sbjct: 397 tggctacttcgcctggtctctcctggacaacttcgagtgg 358
>gb|CB645997.1|CB645997 OSJNEb08C01.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb08C01 3', mRNA sequence
Length = 775
Score = 56.0 bits (28), Expect = 2e-005
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 242 tggccacttcacctggtctctgctggacaacttcgagtgg 281
|||| ||||| |||||||||| ||||||||||||||||||
Sbjct: 509 tggctacttcgcctggtctctcctggacaacttcgagtgg 470
>gb|CB654046.1|CB654046 OSJNEc05K05.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc05K05 3', mRNA sequence
Length = 837
Score = 56.0 bits (28), Expect = 2e-005
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 242 tggccacttcacctggtctctgctggacaacttcgagtgg 281
|||| ||||| |||||||||| ||||||||||||||||||
Sbjct: 484 tggctacttcgcctggtctctcctggacaacttcgagtgg 445
>gb|CB656093.1|CB656093 OSJNEc10A12.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc10A12 5', mRNA sequence
Length = 796
Score = 56.0 bits (28), Expect = 2e-005
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 242 tggccacttcacctggtctctgctggacaacttcgagtgg 281
|||| ||||| |||||||||| ||||||||||||||||||
Sbjct: 704 tggctacttcgcctggtctctcctggacaacttcgagtgg 743
>gb|CB663624.1|CB663624 OSJNEd08N06.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd08N06 3', mRNA sequence
Length = 835
Score = 56.0 bits (28), Expect = 2e-005
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 242 tggccacttcacctggtctctgctggacaacttcgagtgg 281
|||| ||||| |||||||||| ||||||||||||||||||
Sbjct: 396 tggctacttcgcctggtctctcctggacaacttcgagtgg 357
>gb|CB663658.1|CB663658 OSJNEd08O07.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd08O07 3', mRNA sequence
Length = 806
Score = 56.0 bits (28), Expect = 2e-005
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 242 tggccacttcacctggtctctgctggacaacttcgagtgg 281
|||| ||||| |||||||||| ||||||||||||||||||
Sbjct: 396 tggctacttcgcctggtctctcctggacaacttcgagtgg 357
>gb|CB668192.1|CB668192 OSJNEd15O19.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd15O19 3', mRNA sequence
Length = 877
Score = 56.0 bits (28), Expect = 2e-005
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 242 tggccacttcacctggtctctgctggacaacttcgagtgg 281
|||| ||||| |||||||||| ||||||||||||||||||
Sbjct: 494 tggctacttcgcctggtctctcctggacaacttcgagtgg 455
>gb|CB668312.1|CB668312 OSJNEd16B19.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd16B19 3', mRNA sequence
Length = 835
Score = 56.0 bits (28), Expect = 2e-005
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 242 tggccacttcacctggtctctgctggacaacttcgagtgg 281
|||| ||||| |||||||||| ||||||||||||||||||
Sbjct: 396 tggctacttcgcctggtctctcctggacaacttcgagtgg 357
>gb|CB674933.1|CB674933 OSJNEe10E15.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe10E15 3', mRNA sequence
Length = 828
Score = 56.0 bits (28), Expect = 2e-005
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 242 tggccacttcacctggtctctgctggacaacttcgagtgg 281
|||| ||||| |||||||||| ||||||||||||||||||
Sbjct: 389 tggctacttcgcctggtctctcctggacaacttcgagtgg 350
>gb|CV731445.1|CV731445 FLO--05-H19.b1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--05-H19,
mRNA sequence
Length = 423
Score = 56.0 bits (28), Expect = 2e-005
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 242 tggccacttcacctggtctctgctggacaacttcgagtgg 281
|||| ||||| |||||||||| ||||||||||||||||||
Sbjct: 115 tggctacttcgcctggtctctcctggacaacttcgagtgg 154
>gb|U28047.2|OSU28047 Oryza sativa beta-glucosidase mRNA, complete cds
Length = 1909
Score = 56.0 bits (28), Expect = 2e-005
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 242 tggccacttcacctggtctctgctggacaacttcgagtgg 281
|||| ||||| |||||||||| ||||||||||||||||||
Sbjct: 1471 tggctacttcgcctggtctctcctggacaacttcgagtgg 1510
>dbj|AK059920.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-209-G08, full
insert sequence
Length = 1302
Score = 56.0 bits (28), Expect = 2e-005
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 242 tggccacttcacctggtctctgctggacaacttcgagtgg 281
|||| ||||| |||||||||| ||||||||||||||||||
Sbjct: 907 tggctacttcgcctggtctctcctggacaacttcgagtgg 946
>dbj|AK100165.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023021K07, full
insert sequence
Length = 1894
Score = 56.0 bits (28), Expect = 2e-005
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 242 tggccacttcacctggtctctgctggacaacttcgagtgg 281
|||| ||||| |||||||||| ||||||||||||||||||
Sbjct: 1466 tggctacttcgcctggtctctcctggacaacttcgagtgg 1505
>dbj|AK103027.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033117C01, full
insert sequence
Length = 1857
Score = 56.0 bits (28), Expect = 2e-005
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 242 tggccacttcacctggtctctgctggacaacttcgagtgg 281
|||| ||||| |||||||||| ||||||||||||||||||
Sbjct: 1462 tggctacttcgcctggtctctcctggacaacttcgagtgg 1501
>gb|AC133334.8| Oryza sativa chromosome 3 BAC OSJNBa0004L11 genomic sequence, complete
sequence
Length = 133889
Score = 56.0 bits (28), Expect = 2e-005
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 242 tggccacttcacctggtctctgctggacaacttcgagtgg 281
|||| ||||| |||||||||| ||||||||||||||||||
Sbjct: 79156 tggctacttcgcctggtctctcctggacaacttcgagtgg 79195
>dbj|AK105026.2| Oryza sativa (japonica cultivar-group) cDNA clone:001-011-H02, full
insert sequence
Length = 1846
Score = 56.0 bits (28), Expect = 2e-005
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 242 tggccacttcacctggtctctgctggacaacttcgagtgg 281
|||| ||||| |||||||||| ||||||||||||||||||
Sbjct: 1463 tggctacttcgcctggtctctcctggacaacttcgagtgg 1502
>gb|AACV01007733.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg007733, whole
genome shotgun sequence
Length = 4355
Score = 56.0 bits (28), Expect = 2e-005
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 242 tggccacttcacctggtctctgctggacaacttcgagtgg 281
|||| ||||| |||||||||| ||||||||||||||||||
Sbjct: 4018 tggctacttcgcctggtctctcctggacaacttcgagtgg 3979
>ref|XM_469436.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1849
Score = 56.0 bits (28), Expect = 2e-005
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 242 tggccacttcacctggtctctgctggacaacttcgagtgg 281
|||| ||||| |||||||||| ||||||||||||||||||
Sbjct: 1460 tggctacttcgcctggtctctcctggacaacttcgagtgg 1499
>ref|NT_079916.2| Oryza sativa (japonica cultivar-group)
Length = 3914802
Score = 56.0 bits (28), Expect = 2e-005
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 242 tggccacttcacctggtctctgctggacaacttcgagtgg 281
|||| ||||| |||||||||| ||||||||||||||||||
Sbjct: 1251135 tggctacttcgcctggtctctcctggacaacttcgagtgg 1251096
>gb|CH401176.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000013 genomic
scaffold, whole genome shotgun sequence
Length = 9810738
Score = 56.0 bits (28), Expect = 2e-005
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 242 tggccacttcacctggtctctgctggacaacttcgagtgg 281
|||| ||||| |||||||||| ||||||||||||||||||
Sbjct: 1728242 tggctacttcgcctggtctctcctggacaacttcgagtgg 1728203
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 56.0 bits (28), Expect = 2e-005
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 242 tggccacttcacctggtctctgctggacaacttcgagtgg 281
|||| ||||| |||||||||| ||||||||||||||||||
Sbjct: 28994405 tggctacttcgcctggtctctcctggacaacttcgagtgg 28994366
Score = 48.1 bits (24), Expect = 0.006
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 234 gacgtgcgtggccacttcacctggtctctgctggacaacttcgagtggtcggccgg 289
||||| ||||| ||||| | ||||||||||||||||||| |||||| |||||||
Sbjct: 6071510 gacgtacgtgggtacttcgcgtggtctctgctggacaactgggagtgggcggccgg 6071455
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 56.0 bits (28), Expect = 2e-005
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 242 tggccacttcacctggtctctgctggacaacttcgagtgg 281
|||| ||||| |||||||||| ||||||||||||||||||
Sbjct: 28037194 tggctacttcgcctggtctctcctggacaacttcgagtgg 28037155
Score = 48.1 bits (24), Expect = 0.006
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 234 gacgtgcgtggccacttcacctggtctctgctggacaacttcgagtggtcggccgg 289
||||| ||||| ||||| | ||||||||||||||||||| |||||| |||||||
Sbjct: 5844265 gacgtacgtgggtacttcgcgtggtctctgctggacaactgggagtgggcggccgg 5844210
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 56.0 bits (28), Expect = 2e-005
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 242 tggccacttcacctggtctctgctggacaacttcgagtgg 281
|||| ||||| |||||||||| ||||||||||||||||||
Sbjct: 27945870 tggctacttcgcctggtctctcctggacaacttcgagtgg 27945831
Score = 48.1 bits (24), Expect = 0.006
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 234 gacgtgcgtggccacttcacctggtctctgctggacaacttcgagtggtcggccgg 289
||||| ||||| ||||| | ||||||||||||||||||| |||||| |||||||
Sbjct: 5845052 gacgtacgtgggtacttcgcgtggtctctgctggacaactgggagtgggcggccgg 5844997
>gb|AC091670.7| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1212_C08
map R2847, complete sequence
Length = 100918
Score = 56.0 bits (28), Expect = 2e-005
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 242 tggccacttcacctggtctctgctggacaacttcgagtgg 281
|||| ||||| |||||||||| ||||||||||||||||||
Sbjct: 81598 tggctacttcgcctggtctctcctggacaacttcgagtgg 81559
>gb|AU066086.2|AU066086 AU066086 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S2816_5A, mRNA sequence
Length = 345
Score = 50.1 bits (25), Expect = 0.001
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 242 tggccacttcacctggtctctgctggacaacttcgagtgg 281
|||| ||||| |||||||||| ||||| ||||||||||||
Sbjct: 27 tggctacttcgcctggtctctcctgganaacttcgagtgg 66
>gb|AU222984.1|AU222984 AU222984 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S2571, mRNA sequence
Length = 467
Score = 50.1 bits (25), Expect = 0.001
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 242 tggccacttcacctggtctctgctggacaacttcgagtgg 281
|||| ||||| |||||||| | ||||||||||||||||||
Sbjct: 148 tggctacttcgcctggtctntcctggacaacttcgagtgg 187
>gb|CB642724.1|CB642724 OSJNEb03A24.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb03A24 3', mRNA sequence
Length = 664
Score = 48.1 bits (24), Expect = 0.006
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 234 gacgtgcgtggccacttcacctggtctctgctggacaacttcgagtggtcggccgg 289
||||| ||||| ||||| | ||||||||||||||||||| |||||| |||||||
Sbjct: 384 gacgtacgtgggtacttcgcgtggtctctgctggacaactgggagtgggcggccgg 329
>gb|CB642882.1|CB642882 OSJNEb03E17.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb03E17 3', mRNA sequence
Length = 763
Score = 48.1 bits (24), Expect = 0.006
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 234 gacgtgcgtggccacttcacctggtctctgctggacaacttcgagtggtcggccgg 289
||||| ||||| ||||| | ||||||||||||||||||| |||||| |||||||
Sbjct: 436 gacgtacgtgggtacttcgcgtggtctctgctggacaactgggagtgggcggccgg 381
>gb|CB673496.1|CB673496 OSJNEe08A17.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe08A17 3', mRNA sequence
Length = 790
Score = 48.1 bits (24), Expect = 0.006
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 234 gacgtgcgtggccacttcacctggtctctgctggacaacttcgagtggtcggccgg 289
||||| ||||| ||||| | ||||||||||||||||||| |||||| |||||||
Sbjct: 533 gacgtacgtgggtacttcgcgtggtctctgctggacaactgggagtgggcggccgg 478
>gb|AY129294.1| Oryza sativa (japonica cultivar-group) beta-glucosidase mRNA,
complete cds
Length = 2032
Score = 48.1 bits (24), Expect = 0.006
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 234 gacgtgcgtggccacttcacctggtctctgctggacaacttcgagtggtcggccgg 289
||||| ||||| ||||| | ||||||||||||||||||| |||||| |||||||
Sbjct: 1549 gacgtacgtgggtacttcgcgtggtctctgctggacaactgggagtgggcggccgg 1604
>dbj|AK119546.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-A05, full
insert sequence
Length = 1828
Score = 48.1 bits (24), Expect = 0.006
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 234 gacgtgcgtggccacttcacctggtctctgctggacaacttcgagtggtcggccgg 289
||||| ||||| ||||| | ||||||||||||||||||| |||||| |||||||
Sbjct: 1467 gacgtacgtgggtacttcgcgtggtctctgctggacaactgggagtgggcggccgg 1522
>gb|AC146619.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
OSJNAa0021B21, from chromosome 3, complete sequence
Length = 139208
Score = 48.1 bits (24), Expect = 0.006
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 234 gacgtgcgtggccacttcacctggtctctgctggacaacttcgagtggtcggccgg 289
||||| ||||| ||||| | ||||||||||||||||||| |||||| |||||||
Sbjct: 73882 gacgtacgtgggtacttcgcgtggtctctgctggacaactgggagtgggcggccgg 73827
>gb|AACV01006096.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006096, whole
genome shotgun sequence
Length = 15111
Score = 48.1 bits (24), Expect = 0.006
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 234 gacgtgcgtggccacttcacctggtctctgctggacaacttcgagtggtcggccgg 289
||||| ||||| ||||| | ||||||||||||||||||| |||||| |||||||
Sbjct: 9922 gacgtacgtgggtacttcgcgtggtctctgctggacaactgggagtgggcggccgg 9867
>ref|NT_107189.1| Oryza sativa (japonica cultivar-group)
Length = 1905944
Score = 48.1 bits (24), Expect = 0.006
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 234 gacgtgcgtggccacttcacctggtctctgctggacaacttcgagtggtcggccgg 289
||||| ||||| ||||| | ||||||||||||||||||| |||||| |||||||
Sbjct: 1008598 gacgtacgtgggtacttcgcgtggtctctgctggacaactgggagtgggcggccgg 1008543
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
scaffold, whole genome shotgun sequence
Length = 13858245
Score = 48.1 bits (24), Expect = 0.006
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 234 gacgtgcgtggccacttcacctggtctctgctggacaacttcgagtggtcggccgg 289
||||| ||||| ||||| | ||||||||||||||||||| |||||| |||||||
Sbjct: 5879148 gacgtacgtgggtacttcgcgtggtctctgctggacaactgggagtgggcggccgg 5879093
>gb|CB648778.1|CB648778 OSJNEb12F12.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb12F12 3', mRNA sequence
Length = 686
Score = 46.1 bits (23), Expect = 0.022
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 255 tggtctctgctggacaacttcgagtgg 281
|||||||| ||||||||||||||||||
Sbjct: 190 tggtctctcctggacaacttcgagtgg 164
>gb|CV731446.1|CV731446 FLO--05-H19.g1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--05-H19,
mRNA sequence
Length = 383
Score = 46.1 bits (23), Expect = 0.022
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 247 acttcacctggtctctgctggacaacttcgagtgg 281
||||| |||||||| | ||||||||||||||||||
Sbjct: 304 acttcgcctggtctttcctggacaacttcgagtgg 270
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,069,943
Number of Sequences: 438736
Number of extensions: 1069943
Number of successful extensions: 23499
Number of sequences better than 0.5: 76
Number of HSP's better than 0.5 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 22528
Number of HSP's gapped (non-prelim): 971
length of query: 621
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 600
effective length of database: 2,791,206,460
effective search space: 1674723876000
effective search space used: 1674723876000
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)