BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8010745.2.1
(805 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB653333.1|CB653333 OSJNEc04E05.f OSJNEc Oryza sativa (j... 72 5e-010
dbj|AK058333.1| Oryza sativa (japonica cultivar-group) cDNA... 72 5e-010
gb|AACV01026335.1| Oryza sativa (japonica cultivar-group) C... 72 5e-010
ref|XM_473162.1| Oryza sativa (japonica cultivar-group), p... 72 5e-010
ref|NT_079864.2| Oryza sativa (japonica cultivar-group) 72 5e-010
gb|CH401479.1| Oryza sativa (japonica cultivar-group) scaff... 72 5e-010
emb|AL606659.3|OSJN00108 Oryza sativa genomic DNA, chromoso... 72 5e-010
emb|AL606622.3|OSJN00059 Oryza sativa genomic DNA, chromoso... 72 5e-010
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 72 5e-010
gb|CA755317.1|CA755317 BR030017000_PLATE_H05_40_046.ab1 OA ... 46 0.029
gb|CB674065.1|CB674065 OSJNEe08O24.r OSJNEe Oryza sativa (j... 46 0.029
gb|CB676159.1|CB676159 OSJNEe12E07.r OSJNEe Oryza sativa (j... 46 0.029
dbj|AK066850.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.029
dbj|AK068772.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.029
ref|XM_473160.1| Oryza sativa (japonica cultivar-group), p... 46 0.029
gb|AU092973.1|AU092973 AU092973 Rice callus Oryza sativa (j... 44 0.12
gb|AU174728.1|AU174728 AU174728 Rice cDNA from leaf Oryza s... 44 0.12
dbj|AK102869.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.12
dbj|AK121679.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.12
dbj|AK121935.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.12
gb|AQ854005.1|AQ854005 nbxb0048E01f CUGI Rice BAC Library O... 42 0.46
gb|AZ125788.1|AZ125788 OSJNBb0095D13f CUGI Rice BAC Library... 42 0.46
gb|AC108754.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.46
dbj|AK119314.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.46
gb|AC137594.2| Oryza sativa (japonica cultivar-group) chrom... 42 0.46
ref|NT_107233.1| Oryza sativa (japonica cultivar-group) 42 0.46
dbj|AP003626.3| Oryza sativa (japonica cultivar-group) geno... 42 0.46
dbj|AP003711.3| Oryza sativa (japonica cultivar-group) geno... 42 0.46
gb|AACV01010101.1| Oryza sativa (japonica cultivar-group) c... 42 0.46
gb|AACV01014544.1| Oryza sativa (japonica cultivar-group) c... 42 0.46
gb|AACV01020376.1| Oryza sativa (japonica cultivar-group) c... 42 0.46
gb|CH401242.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.46
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.46
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.46
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.46
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.46
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.46
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 42 0.46
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 42 0.46
>gb|CB653333.1|CB653333 OSJNEc04E05.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc04E05 5', mRNA sequence
Length = 789
Score = 71.9 bits (36), Expect = 5e-010
Identities = 57/64 (89%)
Strand = Plus / Minus
Query: 616 gcagtccctggcgtagatcgccgtgtagtggttcagcccgatgaagtccgccttgtaccg 675
||||||||||||||| | | |||||||||||||| ||||||||||||| |||||||||
Sbjct: 564 gcagtccctggcgtacagggtcgtgtagtggttcaccccgatgaagtccagcttgtaccg 505
Query: 676 cagc 679
||||
Sbjct: 504 cagc 501
>dbj|AK058333.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-014-C11, full
insert sequence
Length = 921
Score = 71.9 bits (36), Expect = 5e-010
Identities = 57/64 (89%)
Strand = Plus / Minus
Query: 616 gcagtccctggcgtagatcgccgtgtagtggttcagcccgatgaagtccgccttgtaccg 675
||||||||||||||| | | |||||||||||||| ||||||||||||| |||||||||
Sbjct: 280 gcagtccctggcgtacagggtcgtgtagtggttcaccccgatgaagtccagcttgtaccg 221
Query: 676 cagc 679
||||
Sbjct: 220 cagc 217
>gb|AACV01026335.1| Oryza sativa (japonica cultivar-group) Ctg026335, whole genome
shotgun sequence
Length = 13591
Score = 71.9 bits (36), Expect = 5e-010
Identities = 57/64 (89%)
Strand = Plus / Plus
Query: 616 gcagtccctggcgtagatcgccgtgtagtggttcagcccgatgaagtccgccttgtaccg 675
||||||||||||||| | | |||||||||||||| ||||||||||||| |||||||||
Sbjct: 6470 gcagtccctggcgtacagggtcgtgtagtggttcaccccgatgaagtccagcttgtaccg 6529
Query: 676 cagc 679
||||
Sbjct: 6530 cagc 6533
>ref|XM_473162.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1518
Score = 71.9 bits (36), Expect = 5e-010
Identities = 57/64 (89%)
Strand = Plus / Minus
Query: 616 gcagtccctggcgtagatcgccgtgtagtggttcagcccgatgaagtccgccttgtaccg 675
||||||||||||||| | | |||||||||||||| ||||||||||||| |||||||||
Sbjct: 1035 gcagtccctggcgtacagggtcgtgtagtggttcaccccgatgaagtccagcttgtaccg 976
Query: 676 cagc 679
||||
Sbjct: 975 cagc 972
>ref|NT_079864.2| Oryza sativa (japonica cultivar-group)
Length = 1076642
Score = 71.9 bits (36), Expect = 5e-010
Identities = 57/64 (89%)
Strand = Plus / Plus
Query: 616 gcagtccctggcgtagatcgccgtgtagtggttcagcccgatgaagtccgccttgtaccg 675
||||||||||||||| | | |||||||||||||| ||||||||||||| |||||||||
Sbjct: 606246 gcagtccctggcgtacagggtcgtgtagtggttcaccccgatgaagtccagcttgtaccg 606305
Query: 676 cagc 679
||||
Sbjct: 606306 cagc 606309
Score = 42.1 bits (21), Expect = 0.46
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 283 ccacacgaagtagccccgcacgtttgctccgttcctg 319
|||| |||||||||||| ||||||||||| ||||||
Sbjct: 587502 ccacgcgaagtagccccctacgtttgctcccttcctg 587466
>gb|CH401479.1| Oryza sativa (japonica cultivar-group) scaffold000458 genomic
scaffold, whole genome shotgun sequence
Length = 14443
Score = 71.9 bits (36), Expect = 5e-010
Identities = 57/64 (89%)
Strand = Plus / Plus
Query: 616 gcagtccctggcgtagatcgccgtgtagtggttcagcccgatgaagtccgccttgtaccg 675
||||||||||||||| | | |||||||||||||| ||||||||||||| |||||||||
Sbjct: 7322 gcagtccctggcgtacagggtcgtgtagtggttcaccccgatgaagtccagcttgtaccg 7381
Query: 676 cagc 679
||||
Sbjct: 7382 cagc 7385
>emb|AL606659.3|OSJN00108 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0070J16,
complete sequence
Length = 130718
Score = 71.9 bits (36), Expect = 5e-010
Identities = 57/64 (89%)
Strand = Plus / Plus
Query: 616 gcagtccctggcgtagatcgccgtgtagtggttcagcccgatgaagtccgccttgtaccg 675
||||||||||||||| | | |||||||||||||| ||||||||||||| |||||||||
Sbjct: 38451 gcagtccctggcgtacagggtcgtgtagtggttcaccccgatgaagtccagcttgtaccg 38510
Query: 676 cagc 679
||||
Sbjct: 38511 cagc 38514
Score = 42.1 bits (21), Expect = 0.46
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 283 ccacacgaagtagccccgcacgtttgctccgttcctg 319
|||| |||||||||||| ||||||||||| ||||||
Sbjct: 19707 ccacgcgaagtagccccctacgtttgctcccttcctg 19671
>emb|AL606622.3|OSJN00059 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0004N05,
complete sequence
Length = 158601
Score = 71.9 bits (36), Expect = 5e-010
Identities = 57/64 (89%)
Strand = Plus / Plus
Query: 616 gcagtccctggcgtagatcgccgtgtagtggttcagcccgatgaagtccgccttgtaccg 675
||||||||||||||| | | |||||||||||||| ||||||||||||| |||||||||
Sbjct: 144922 gcagtccctggcgtacagggtcgtgtagtggttcaccccgatgaagtccagcttgtaccg 144981
Query: 676 cagc 679
||||
Sbjct: 144982 cagc 144985
Score = 42.1 bits (21), Expect = 0.46
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 283 ccacacgaagtagccccgcacgtttgctccgttcctg 319
|||| |||||||||||| ||||||||||| ||||||
Sbjct: 126178 ccacgcgaagtagccccctacgtttgctcccttcctg 126142
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 71.9 bits (36), Expect = 5e-010
Identities = 57/64 (89%)
Strand = Plus / Plus
Query: 616 gcagtccctggcgtagatcgccgtgtagtggttcagcccgatgaagtccgccttgtaccg 675
||||||||||||||| | | |||||||||||||| ||||||||||||| |||||||||
Sbjct: 25658724 gcagtccctggcgtacagggtcgtgtagtggttcaccccgatgaagtccagcttgtaccg 25658783
Query: 676 cagc 679
||||
Sbjct: 25658784 cagc 25658787
Score = 42.1 bits (21), Expect = 0.46
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 283 ccacacgaagtagccccgcacgtttgctccgttcctg 319
|||| |||||||||||| ||||||||||| ||||||
Sbjct: 25639980 ccacgcgaagtagccccctacgtttgctcccttcctg 25639944
>gb|CA755317.1|CA755317 BR030017000_PLATE_H05_40_046.ab1 OA Oryza sativa (japonica
cultivar-group) cDNA clone
BR030017000_PLATE_H05_40_046.ab1 similar to
beta-glucosidase [Pinus contorta], mRNA sequence
Length = 626
Score = 46.1 bits (23), Expect = 0.029
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 283 ccacacgaagtagccccgcacgtttgctccgttcctgagtgct 325
|||| |||||||||||| ||||||||||| ||||||| ||||
Sbjct: 340 ccacgcgaagtagccccctacgtttgctcccttcctgattgct 382
>gb|CB674065.1|CB674065 OSJNEe08O24.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe08O24 3', mRNA sequence
Length = 780
Score = 46.1 bits (23), Expect = 0.029
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 283 ccacacgaagtagccccgcacgtttgctccgttcctgagtgct 325
|||| |||||||||||| ||||||||||| ||||||| ||||
Sbjct: 344 ccacgcgaagtagccccctacgtttgctcccttcctgattgct 386
>gb|CB676159.1|CB676159 OSJNEe12E07.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe12E07 3', mRNA sequence
Length = 752
Score = 46.1 bits (23), Expect = 0.029
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 283 ccacacgaagtagccccgcacgtttgctccgttcctgagtgct 325
|||| |||||||||||| ||||||||||| ||||||| ||||
Sbjct: 479 ccacgcgaagtagccccctacgtttgctcccttcctgattgct 521
>dbj|AK066850.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013081O13, full
insert sequence
Length = 2770
Score = 46.1 bits (23), Expect = 0.029
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 283 ccacacgaagtagccccgcacgtttgctccgttcctgagtgct 325
|||| |||||||||||| ||||||||||| ||||||| ||||
Sbjct: 2659 ccacgcgaagtagccccctacgtttgctcccttcctgattgct 2617
>dbj|AK068772.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013164L07, full
insert sequence
Length = 1827
Score = 46.1 bits (23), Expect = 0.029
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 283 ccacacgaagtagccccgcacgtttgctccgttcctgagtgct 325
|||| |||||||||||| ||||||||||| ||||||| ||||
Sbjct: 1320 ccacgcgaagtagccccctacgtttgctcccttcctgattgct 1278
>ref|XM_473160.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1551
Score = 46.1 bits (23), Expect = 0.029
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 283 ccacacgaagtagccccgcacgtttgctccgttcctgagtgct 325
|||| |||||||||||| ||||||||||| ||||||| ||||
Sbjct: 1371 ccacgcgaagtagccccctacgtttgctcccttcctgattgct 1329
>gb|AU092973.1|AU092973 AU092973 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C61228, mRNA sequence
Length = 696
Score = 44.1 bits (22), Expect = 0.12
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 283 ccacacgaagtagccccgcacgtttgctccgttcctga 320
|||||||||||||||| ||||||| | ||||||||||
Sbjct: 187 ccacacgaagtagccctgcacgttcgacccgttcctga 150
>gb|AU174728.1|AU174728 AU174728 Rice cDNA from leaf Oryza sativa (japonica cultivar-group)
cDNA clone F10275, mRNA sequence
Length = 408
Score = 44.1 bits (22), Expect = 0.12
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 283 ccacacgaagtagccccgcacgtttgctccgttcctga 320
|||||||||||||||| ||||||| | ||||||||||
Sbjct: 270 ccacacgaagtagccctgcacgttcgacccgttcctga 233
>dbj|AK102869.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033111O12, full
insert sequence
Length = 1993
Score = 44.1 bits (22), Expect = 0.12
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 283 ccacacgaagtagccccgcacgtttgctccgttcctga 320
|||||||||||||||| ||||||| | ||||||||||
Sbjct: 1502 ccacacgaagtagccctgcacgttcgacccgttcctga 1465
>dbj|AK121679.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033069H08, full
insert sequence
Length = 2059
Score = 44.1 bits (22), Expect = 0.12
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 283 ccacacgaagtagccccgcacgtttgctccgttcctga 320
|||||||||||||||| ||||||| | ||||||||||
Sbjct: 1568 ccacacgaagtagccctgcacgttcgacccgttcctga 1531
>dbj|AK121935.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033107A08, full
insert sequence
Length = 2096
Score = 44.1 bits (22), Expect = 0.12
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 283 ccacacgaagtagccccgcacgtttgctccgttcctga 320
|||||||||||||||| ||||||| | ||||||||||
Sbjct: 1611 ccacacgaagtagccctgcacgttcgacccgttcctga 1574
>gb|AQ854005.1|AQ854005 nbxb0048E01f CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0048E01f, DNA sequence
Length = 609
Score = 42.1 bits (21), Expect = 0.46
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 676 cagcagcagcgccttctcctccgcg 700
|||| ||||||||||||||||||||
Sbjct: 27 cagctgcagcgccttctcctccgcg 51
>gb|AZ125788.1|AZ125788 OSJNBb0095D13f CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone OSJNBb0095D13f, DNA
sequence
Length = 488
Score = 42.1 bits (21), Expect = 0.46
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 676 cagcagcagcgccttctcctccgcg 700
|||| ||||||||||||||||||||
Sbjct: 388 cagctgcagcgccttctcctccgcg 412
>gb|AC108754.1| Oryza sativa (japonica cultivar-group) chromosome 9 clone
OSJNBa0010L05, *** SEQUENCING IN PROGRESS ***, 7 unordered
pieces
Length = 151819
Score = 42.1 bits (21), Expect = 0.46
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 283 ccacacgaagtagccccgcacgtttgctccgttcctg 319
|||||||||||||||| ||||||| | |||||||||
Sbjct: 56162 ccacacgaagtagccctgcacgttcgacccgttcctg 56198
>dbj|AK119314.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-130-G11, full
insert sequence
Length = 2218
Score = 42.1 bits (21), Expect = 0.46
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 676 cagcagcagcgccttctcctccgcg 700
|||| ||||||||||||||||||||
Sbjct: 495 cagctgcagcgccttctcctccgcg 471
>gb|AC137594.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone
OSJNBa0065A15, complete sequence
Length = 168806
Score = 42.1 bits (21), Expect = 0.46
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 283 ccacacgaagtagccccgcacgtttgctccgttcctg 319
|||||||||||||||| ||||||| | |||||||||
Sbjct: 71210 ccacacgaagtagccctgcacgttcgacccgttcctg 71246
>ref|NT_107233.1| Oryza sativa (japonica cultivar-group)
Length = 6315341
Score = 42.1 bits (21), Expect = 0.46
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 676 cagcagcagcgccttctcctccgcg 700
|||| ||||||||||||||||||||
Sbjct: 1599056 cagctgcagcgccttctcctccgcg 1599032
>dbj|AP003626.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0429G06
Length = 158321
Score = 42.1 bits (21), Expect = 0.46
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 676 cagcagcagcgccttctcctccgcg 700
|||| ||||||||||||||||||||
Sbjct: 143264 cagctgcagcgccttctcctccgcg 143240
>dbj|AP003711.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0417G12
Length = 163568
Score = 42.1 bits (21), Expect = 0.46
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 676 cagcagcagcgccttctcctccgcg 700
|||| ||||||||||||||||||||
Sbjct: 67029 cagctgcagcgccttctcctccgcg 67005
>gb|AACV01010101.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010101, whole
genome shotgun sequence
Length = 13379
Score = 42.1 bits (21), Expect = 0.46
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 283 ccacacgaagtagccccgcacgtttgctccgttcctg 319
|||| |||||||||||| ||||||||||| ||||||
Sbjct: 2044 ccacgcgaagtagccccctacgtttgctcccttcctg 2080
>gb|AACV01014544.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014544, whole
genome shotgun sequence
Length = 22890
Score = 42.1 bits (21), Expect = 0.46
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 676 cagcagcagcgccttctcctccgcg 700
|||| ||||||||||||||||||||
Sbjct: 19613 cagctgcagcgccttctcctccgcg 19637
>gb|AACV01020376.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg020376, whole
genome shotgun sequence
Length = 35034
Score = 42.1 bits (21), Expect = 0.46
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 283 ccacacgaagtagccccgcacgtttgctccgttcctg 319
|||||||||||||||| ||||||| | |||||||||
Sbjct: 14006 ccacacgaagtagccctgcacgttcgacccgttcctg 14042
>gb|CH401242.1| Oryza sativa (japonica cultivar-group) chromosome 9 scaffold000079 genomic
scaffold, whole genome shotgun sequence
Length = 12069826
Score = 42.1 bits (21), Expect = 0.46
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 283 ccacacgaagtagccccgcacgtttgctccgttcctg 319
|||||||||||||||| ||||||| | |||||||||
Sbjct: 9133212 ccacacgaagtagccctgcacgttcgacccgttcctg 9133248
>gb|CH401216.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000053 genomic
scaffold, whole genome shotgun sequence
Length = 12033173
Score = 42.1 bits (21), Expect = 0.46
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 676 cagcagcagcgccttctcctccgcg 700
|||| ||||||||||||||||||||
Sbjct: 5469792 cagctgcagcgccttctcctccgcg 5469768
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 42.1 bits (21), Expect = 0.46
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 283 ccacacgaagtagccccgcacgtttgctccgttcctg 319
|||| |||||||||||| ||||||||||| ||||||
Sbjct: 3530384 ccacgcgaagtagccccctacgtttgctcccttcctg 3530420
>gb|CM000146.1| Oryza sativa (japonica cultivar-group) chromosome 9, whole genome shotgun
sequence
Length = 21543637
Score = 42.1 bits (21), Expect = 0.46
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 283 ccacacgaagtagccccgcacgtttgctccgttcctg 319
|||||||||||||||| ||||||| | |||||||||
Sbjct: 18607023 ccacacgaagtagccctgcacgttcgacccgttcctg 18607059
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 42.1 bits (21), Expect = 0.46
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 676 cagcagcagcgccttctcctccgcg 700
|||| ||||||||||||||||||||
Sbjct: 23168529 cagctgcagcgccttctcctccgcg 23168505
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 42.1 bits (21), Expect = 0.46
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 283 ccacacgaagtagccccgcacgtttgctccgttcctg 319
|||| |||||||||||| ||||||||||| ||||||
Sbjct: 22674483 ccacgcgaagtagccccctacgtttgctcccttcctg 22674519
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 42.1 bits (21), Expect = 0.46
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 676 cagcagcagcgccttctcctccgcg 700
|||| ||||||||||||||||||||
Sbjct: 24133571 cagctgcagcgccttctcctccgcg 24133547
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
sequence
Length = 22696651
Score = 42.1 bits (21), Expect = 0.46
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 283 ccacacgaagtagccccgcacgtttgctccgttcctg 319
|||||||||||||||| ||||||| | |||||||||
Sbjct: 19588135 ccacacgaagtagccctgcacgttcgacccgttcctg 19588171
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 887,321
Number of Sequences: 438736
Number of extensions: 887321
Number of successful extensions: 4055
Number of sequences better than 0.5: 39
Number of HSP's better than 0.5 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3880
Number of HSP's gapped (non-prelim): 175
length of query: 805
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 784
effective length of database: 2,791,206,460
effective search space: 2188305864640
effective search space used: 2188305864640
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)