BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8010496.2.1
(1046 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_473037.1| Oryza sativa (japonica cultivar-group), p... 539 e-150
gb|AU173081.1|AU173081 AU173081 Rice root Oryza sativa (jap... 321 4e-085
gb|AACV01010055.1| Oryza sativa (japonica cultivar-group) c... 309 2e-081
ref|NT_079863.2| Oryza sativa (japonica cultivar-group) 309 2e-081
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 309 2e-081
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 309 2e-081
emb|AL606627.3|OSJN00052 Oryza sativa genomic DNA, chromoso... 309 2e-081
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 309 2e-081
dbj|AP005304.1| Oryza sativa (japonica cultivar-group) chro... 56 4e-005
dbj|AK106726.1| Oryza sativa (japonica cultivar-group) cDNA... 56 4e-005
dbj|AP006754.1| Oryza sativa (japonica cultivar-group) geno... 56 4e-005
dbj|AP004885.3| Oryza sativa (japonica cultivar-group) geno... 56 4e-005
gb|AACV01003235.1| Oryza sativa (japonica cultivar-group) c... 56 4e-005
ref|XM_463939.1| Oryza sativa (japonica cultivar-group), mRNA 56 4e-005
ref|NT_107175.1| Oryza sativa (japonica cultivar-group) 56 4e-005
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 56 4e-005
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 56 4e-005
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 56 4e-005
dbj|AK063458.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.15
dbj|AK099370.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.15
gb|AC135914.2| Oryza sativa (japonica cultivar-group) chrom... 44 0.15
gb|AACV01011153.1| Oryza sativa (japonica cultivar-group) c... 44 0.15
ref|XM_476150.1| Oryza sativa (japonica cultivar-group), p... 44 0.15
ref|NT_107225.1| Oryza sativa (japonica cultivar-group) 44 0.15
gb|CH401191.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.15
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.15
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 44 0.15
>ref|XM_473037.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1872
Score = 539 bits (272), Expect = e-150
Identities = 662/794 (83%), Gaps = 5/794 (0%)
Strand = Plus / Minus
Query: 173 gacggtggtggcggcgcggcggggaacattgtgcggcacggcggagaacatggtgttctt 232
||||| || ||||||| ||| |||||||| | ||||||||||||||||||||||||||||
Sbjct: 1856 gacggcggcggcggcgtggccgggaacatgg-gcggcacggcggagaacatggtgttctt 1798
Query: 233 gtcgacggcggttacgga-gctcccctgccgctgctggtgagagccaccagggccgcgac 291
|||||||||||| ||| || || | ||||||| ||||||| || || ||||| || ||
Sbjct: 1797 gtcgacggcggtgacgcccgcgccgcggccgctgttggtgagggcgacgagggcggccac 1738
Query: 292 gaggccggcgttgcctgaccagcgtcggctcgttctgcccgaag-tgttgcgcgagtcct 350
||||||||||||||| |||| |||||||||||||||| || || || ||||| |||||
Sbjct: 1737 gaggccggcgttgccc-accaacgtcggctcgttctgcgcgtaggtgaggcgcgcgtcct 1679
Query: 351 tgaagccgtcgttcttgtcgggcccgccgaccatggnnnnnnnnagcaggttggggtccg 410
|||| |||||||||||| |||||||||||||||| |||| ||| ||||| |
Sbjct: 1678 tgaactggtcgttcttgtccggcccgccgaccatggcgccgacgagcacgttcgggtcgg 1619
Query: 411 ctttcttgctgtcgcgccacttgtagccgccggtgcacgagtacttgacgccgttgtgcg 470
| |||| |||| | ||||||||| |||||||||||||||||||||| |||||||||||
Sbjct: 1618 cccccttggtgtccctccacttgtacccgccggtgcacgagtacttgatgccgttgtgcg 1559
Query: 471 gcgtggacgcgccacggtggtgcacgtgccgtgggtacttgctgccgaacccaaccacgt 530
|||| ||||| || | |||||||| |||| |||||||| ||||| |||| |||||||
Sbjct: 1558 gcgtcgacgcccccctgtggtgcagccgccgcgggtacttcttgccgtaccccaccacgt 1499
Query: 531 agctcatcttcttggggttgtcaccgagaatgtagttgatctgagacctggcgaactcac 590
||||||||||||| ||||| || || ||||||||||| | ||||||||||||||| |
Sbjct: 1498 agctcatcttcttcgggttatccccaagaatgtagttcacctgagacctggcgaaggagc 1439
Query: 591 ggaggtcgttggtggtcatgaagtttggaccgcagtaccagccggggacgttgacggcct 650
|||| |||| | ||||||||||| || |||||||||||||||||||||||||||| ||
Sbjct: 1438 ggagatcgtcgacggtcatgaagtaggggccgcagtaccagccggggacgttgacggact 1379
Query: 651 ccatgtagtcggcgtagagcgcagcgagaaaggagttggcgacgacgtactgcagcggct 710
|||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||
Sbjct: 1378 ccatgtagtcggcgtagagcgcggcgaggaaggagttggcgacggtgtactgcagcggct 1319
Query: 711 gccccctgccgtggttgaagagcgccatcccgcccttnggtgaagttgaaggcggcgaag 770
| ||| | ||||||||||| |||| | ||| ||||| |||||||||||||||| |||||
Sbjct: 1318 ggcccttcccgtggttgaactgcgcgagcccaccctt-ggtgaagttgaaggcgccgaag 1260
Query: 771 cccggaaagtacatgcacatgttgaggctggtggcgttgtggtagccggcgagcgannnn 830
| ||| ||||| |||||||||| | |||||||| ||||||||| ||| ||||||
Sbjct: 1259 cgcgggaagtaggtgcacatgttcatgctggtggtgttgtggtacccgatgagcgactcc 1200
Query: 831 tcgtacgggtagccggggttgaggaacatgcgcagccgcgncagcagcagctgggcgccc 890
||||| ||||| || ||||||||||||||||| ||||||| ||||||||||| |||||||
Sbjct: 1199 tcgtaggggtaacccgggttgaggaacatgcggagccgcgacagcagcagctcggcgccc 1140
Query: 891 gggagctnnnnntcccagctgaacacnnagaagtcgaggatgttgangnnnnccttggcg 950
|| |||| ||||||||||| || |||||||||||||| || | ||||||||
Sbjct: 1139 ggcagcttgttgtcccagctgaagacggagaagtcgaggatgctgtagaaggccttggcg 1080
Query: 951 tncttgggcagccg 964
| ||||||||||||
Sbjct: 1079 ttcttgggcagccg 1066
>gb|AU173081.1|AU173081 AU173081 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R0330, mRNA sequence
Length = 450
Score = 321 bits (162), Expect = 4e-085
Identities = 378/450 (84%), Gaps = 2/450 (0%)
Strand = Plus / Minus
Query: 316 tcggctcgttctgcccgaag-tgttgcgcgagtccttgaagccgtcgttcttgtcgggcc 374
|||||||||||||| || || || ||||| ||||||||| |||||||||||| ||||
Sbjct: 450 tcggctcgttctgcgcgtaggtgaggcgcgcgtccttgaactggtcgttcttgtccggcc 391
Query: 375 cgccgaccatggnnnnnnnnagcaggttggggtccgctttcttgctgtcgcgccacttgt 434
|||||||||||| |||| ||| ||||| || |||| |||| | ||||||||
Sbjct: 390 cgccgaccatggcgccgacgagcacgttcgggtcggcccccttggtgtccctccacttgt 331
Query: 435 agccgccggtgcacgagtacttgacgccgttgtgcggcgtggacgcgccacggtggtgca 494
| |||||||||||||||||||||| ||||||||||||||| ||||| || | ||||||||
Sbjct: 330 acccgccggtgcacgagtacttgatgccgttgtgcggcgtcgacgcccccctgtggtgca 271
Query: 495 cgtgccgtgggtacttgctgccgaacccaaccacgtagctcatcttcttggggttgtcac 554
|||| |||||||| ||||| |||| |||||||||||||||||||| ||||| || |
Sbjct: 270 gccgccgcgggtacttcttgccgtaccccaccacgtagctcatcttcttcgggttatccc 211
Query: 555 cgagaatgtagttgatctgagacctggcgaactcacggaggtcgttggtggtcatgaagt 614
| ||||||||||| | ||||||||||||||| ||||| |||| | |||||||||||
Sbjct: 210 caagaatgtagttcacctgagacctggcgaaggagcggagatcgtcgacggtcatgaagt 151
Query: 615 ttggaccgcagtaccagccggggacgttgacggcctccatgtagtcggcgtagagcgcag 674
|| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 150 aggggccgcagtaccagccggggacgttgacggactccatgtagtcggcgtagagcgcgg 91
Query: 675 cgagaaaggagttggcgacgacgtactgcagcggctgccccctgccgtggttgaagagcg 734
|||| ||||||||||||||| ||||||||||||||| ||| | ||||||||||| |||
Sbjct: 90 cgaggaaggagttggcgacggtgtactgcagcggctggcccttcccgtggttgaactgcg 31
Query: 735 ccatcccgcccttnggtgaagttgaaggcg 764
| | ||| ||||| ||||||||||||||||
Sbjct: 30 cgagcccaccctt-ggtgaagttgaaggcg 2
>gb|AACV01010055.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010055, whole
genome shotgun sequence
Length = 22746
Score = 309 bits (156), Expect = 2e-081
Identities = 331/394 (84%), Gaps = 1/394 (0%)
Strand = Plus / Minus
Query: 571 ctgagacctggcgaactcacggaggtcgttggtggtcatgaagtttggaccgcagtacca 630
||||||||||||||| ||||| |||| | ||||||||||| || |||||||||||
Sbjct: 12568 ctgagacctggcgaaggagcggagatcgtcgacggtcatgaagtaggggccgcagtacca 12509
Query: 631 gccggggacgttgacggcctccatgtagtcggcgtagagcgcagcgagaaaggagttggc 690
||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 12508 gccggggacgttgacggactccatgtagtcggcgtagagcgcggcgaggaaggagttggc 12449
Query: 691 gacgacgtactgcagcggctgccccctgccgtggttgaagagcgccatcccgcccttngg 750
|||| ||||||||||||||| ||| | ||||||||||| |||| | ||| ||||| ||
Sbjct: 12448 gacggtgtactgcagcggctggcccttcccgtggttgaactgcgcgagcccaccctt-gg 12390
Query: 751 tgaagttgaaggcggcgaagcccggaaagtacatgcacatgttgaggctggtggcgttgt 810
|||||||||||||| |||||| ||| ||||| |||||||||| | |||||||| |||||
Sbjct: 12389 tgaagttgaaggcgccgaagcgcgggaagtaggtgcacatgttcatgctggtggtgttgt 12330
Query: 811 ggtagccggcgagcgannnntcgtacgggtagccggggttgaggaacatgcgcagccgcg 870
|||| ||| |||||| ||||| ||||| || ||||||||||||||||| |||||||
Sbjct: 12329 ggtacccgatgagcgactcctcgtaggggtaacccgggttgaggaacatgcggagccgcg 12270
Query: 871 ncagcagcagctgggcgcccgggagctnnnnntcccagctgaacacnnagaagtcgagga 930
||||||||||| ||||||||| |||| ||||||||||| || ||||||||||||
Sbjct: 12269 acagcagcagctcggcgcccggcagcttgttgtcccagctgaagacggagaagtcgagga 12210
Query: 931 tgttgangnnnnccttggcgtncttgggcagccg 964
|| || | ||||||||| ||||||||||||
Sbjct: 12209 tgctgtagaaggccttggcgttcttgggcagccg 12176
Score = 240 bits (121), Expect = 1e-060
Identities = 330/397 (83%), Gaps = 4/397 (1%)
Strand = Plus / Minus
Query: 173 gacggtggtggcggcgcggcggggaacattgtgcggcacggcggagaacatggtgttctt 232
||||| || ||||||| ||| |||||||| | ||||||||||||||||||||||||||||
Sbjct: 13056 gacggcggcggcggcgtggccgggaacatgg-gcggcacggcggagaacatggtgttctt 12998
Query: 233 gtcgacggcggttacgga-gctcccctgccgctgctggtgagagccaccagggccgcgac 291
|||||||||||| ||| || || | ||||||| ||||||| || || ||||| || ||
Sbjct: 12997 gtcgacggcggtgacgcccgcgccgcggccgctgttggtgagggcgacgagggcggccac 12938
Query: 292 gaggccggcgttgcctgaccagcgtcggctcgttctgcccgaag-tgttgcgcgagtcct 350
||||||||||||||| |||| |||||||||||||||| || || || ||||| |||||
Sbjct: 12937 gaggccggcgttgccc-accaacgtcggctcgttctgcgcgtaggtgaggcgcgcgtcct 12879
Query: 351 tgaagccgtcgttcttgtcgggcccgccgaccatggnnnnnnnnagcaggttggggtccg 410
|||| |||||||||||| |||||||||||||||| |||| ||| ||||| |
Sbjct: 12878 tgaactggtcgttcttgtccggcccgccgaccatggcgccgacgagcacgttcgggtcgg 12819
Query: 411 ctttcttgctgtcgcgccacttgtagccgccggtgcacgagtacttgacgccgttgtgcg 470
| |||| |||| | ||||||||| |||||||||||||||||||||| |||||||||||
Sbjct: 12818 cccccttggtgtccctccacttgtacccgccggtgcacgagtacttgatgccgttgtgcg 12759
Query: 471 gcgtggacgcgccacggtggtgcacgtgccgtgggtacttgctgccgaacccaaccacgt 530
|||| ||||| || | |||||||| |||| |||||||| ||||| |||| |||||||
Sbjct: 12758 gcgtcgacgcccccctgtggtgcagccgccgcgggtacttcttgccgtaccccaccacgt 12699
Query: 531 agctcatcttcttggggttgtcaccgagaatgtagtt 567
||||||||||||| ||||| || || |||||||||||
Sbjct: 12698 agctcatcttcttcgggttatccccaagaatgtagtt 12662
>ref|NT_079863.2| Oryza sativa (japonica cultivar-group)
Length = 2656602
Score = 309 bits (156), Expect = 2e-081
Identities = 331/394 (84%), Gaps = 1/394 (0%)
Strand = Plus / Plus
Query: 571 ctgagacctggcgaactcacggaggtcgttggtggtcatgaagtttggaccgcagtacca 630
||||||||||||||| ||||| |||| | ||||||||||| || |||||||||||
Sbjct: 2444032 ctgagacctggcgaaggagcggagatcgtcgacggtcatgaagtaggggccgcagtacca 2444091
Query: 631 gccggggacgttgacggcctccatgtagtcggcgtagagcgcagcgagaaaggagttggc 690
||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 2444092 gccggggacgttgacggactccatgtagtcggcgtagagcgcggcgaggaaggagttggc 2444151
Query: 691 gacgacgtactgcagcggctgccccctgccgtggttgaagagcgccatcccgcccttngg 750
|||| ||||||||||||||| ||| | ||||||||||| |||| | ||| ||||| ||
Sbjct: 2444152 gacggtgtactgcagcggctggcccttcccgtggttgaactgcgcgagcccaccctt-gg 2444210
Query: 751 tgaagttgaaggcggcgaagcccggaaagtacatgcacatgttgaggctggtggcgttgt 810
|||||||||||||| |||||| ||| ||||| |||||||||| | |||||||| |||||
Sbjct: 2444211 tgaagttgaaggcgccgaagcgcgggaagtaggtgcacatgttcatgctggtggtgttgt 2444270
Query: 811 ggtagccggcgagcgannnntcgtacgggtagccggggttgaggaacatgcgcagccgcg 870
|||| ||| |||||| ||||| ||||| || ||||||||||||||||| |||||||
Sbjct: 2444271 ggtacccgatgagcgactcctcgtaggggtaacccgggttgaggaacatgcggagccgcg 2444330
Query: 871 ncagcagcagctgggcgcccgggagctnnnnntcccagctgaacacnnagaagtcgagga 930
||||||||||| ||||||||| |||| ||||||||||| || ||||||||||||
Sbjct: 2444331 acagcagcagctcggcgcccggcagcttgttgtcccagctgaagacggagaagtcgagga 2444390
Query: 931 tgttgangnnnnccttggcgtncttgggcagccg 964
|| || | ||||||||| ||||||||||||
Sbjct: 2444391 tgctgtagaaggccttggcgttcttgggcagccg 2444424
Score = 240 bits (121), Expect = 1e-060
Identities = 330/397 (83%), Gaps = 4/397 (1%)
Strand = Plus / Plus
Query: 173 gacggtggtggcggcgcggcggggaacattgtgcggcacggcggagaacatggtgttctt 232
||||| || ||||||| ||| |||||||| | ||||||||||||||||||||||||||||
Sbjct: 2443544 gacggcggcggcggcgtggccgggaacatgg-gcggcacggcggagaacatggtgttctt 2443602
Query: 233 gtcgacggcggttacgga-gctcccctgccgctgctggtgagagccaccagggccgcgac 291
|||||||||||| ||| || || | ||||||| ||||||| || || ||||| || ||
Sbjct: 2443603 gtcgacggcggtgacgcccgcgccgcggccgctgttggtgagggcgacgagggcggccac 2443662
Query: 292 gaggccggcgttgcctgaccagcgtcggctcgttctgcccgaag-tgttgcgcgagtcct 350
||||||||||||||| |||| |||||||||||||||| || || || ||||| |||||
Sbjct: 2443663 gaggccggcgttgccc-accaacgtcggctcgttctgcgcgtaggtgaggcgcgcgtcct 2443721
Query: 351 tgaagccgtcgttcttgtcgggcccgccgaccatggnnnnnnnnagcaggttggggtccg 410
|||| |||||||||||| |||||||||||||||| |||| ||| ||||| |
Sbjct: 2443722 tgaactggtcgttcttgtccggcccgccgaccatggcgccgacgagcacgttcgggtcgg 2443781
Query: 411 ctttcttgctgtcgcgccacttgtagccgccggtgcacgagtacttgacgccgttgtgcg 470
| |||| |||| | ||||||||| |||||||||||||||||||||| |||||||||||
Sbjct: 2443782 cccccttggtgtccctccacttgtacccgccggtgcacgagtacttgatgccgttgtgcg 2443841
Query: 471 gcgtggacgcgccacggtggtgcacgtgccgtgggtacttgctgccgaacccaaccacgt 530
|||| ||||| || | |||||||| |||| |||||||| ||||| |||| |||||||
Sbjct: 2443842 gcgtcgacgcccccctgtggtgcagccgccgcgggtacttcttgccgtaccccaccacgt 2443901
Query: 531 agctcatcttcttggggttgtcaccgagaatgtagtt 567
||||||||||||| ||||| || || |||||||||||
Sbjct: 2443902 agctcatcttcttcgggttatccccaagaatgtagtt 2443938
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 309 bits (156), Expect = 2e-081
Identities = 331/394 (84%), Gaps = 1/394 (0%)
Strand = Plus / Plus
Query: 571 ctgagacctggcgaactcacggaggtcgttggtggtcatgaagtttggaccgcagtacca 630
||||||||||||||| ||||| |||| | ||||||||||| || |||||||||||
Sbjct: 2759364 ctgagacctggcgaaggagcggagatcgtcgacggtcatgaagtaggggccgcagtacca 2759423
Query: 631 gccggggacgttgacggcctccatgtagtcggcgtagagcgcagcgagaaaggagttggc 690
||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 2759424 gccggggacgttgacggactccatgtagtcggcgtagagcgcggcgaggaaggagttggc 2759483
Query: 691 gacgacgtactgcagcggctgccccctgccgtggttgaagagcgccatcccgcccttngg 750
|||| ||||||||||||||| ||| | ||||||||||| |||| | ||| ||||| ||
Sbjct: 2759484 gacggtgtactgcagcggctggcccttcccgtggttgaactgcgcgagcccaccctt-gg 2759542
Query: 751 tgaagttgaaggcggcgaagcccggaaagtacatgcacatgttgaggctggtggcgttgt 810
|||||||||||||| |||||| ||| ||||| |||||||||| | |||||||| |||||
Sbjct: 2759543 tgaagttgaaggcgccgaagcgcgggaagtaggtgcacatgttcatgctggtggtgttgt 2759602
Query: 811 ggtagccggcgagcgannnntcgtacgggtagccggggttgaggaacatgcgcagccgcg 870
|||| ||| |||||| ||||| ||||| || ||||||||||||||||| |||||||
Sbjct: 2759603 ggtacccgatgagcgactcctcgtaggggtaacccgggttgaggaacatgcggagccgcg 2759662
Query: 871 ncagcagcagctgggcgcccgggagctnnnnntcccagctgaacacnnagaagtcgagga 930
||||||||||| ||||||||| |||| ||||||||||| || ||||||||||||
Sbjct: 2759663 acagcagcagctcggcgcccggcagcttgttgtcccagctgaagacggagaagtcgagga 2759722
Query: 931 tgttgangnnnnccttggcgtncttgggcagccg 964
|| || | ||||||||| ||||||||||||
Sbjct: 2759723 tgctgtagaaggccttggcgttcttgggcagccg 2759756
Score = 240 bits (121), Expect = 1e-060
Identities = 330/397 (83%), Gaps = 4/397 (1%)
Strand = Plus / Plus
Query: 173 gacggtggtggcggcgcggcggggaacattgtgcggcacggcggagaacatggtgttctt 232
||||| || ||||||| ||| |||||||| | ||||||||||||||||||||||||||||
Sbjct: 2758876 gacggcggcggcggcgtggccgggaacatgg-gcggcacggcggagaacatggtgttctt 2758934
Query: 233 gtcgacggcggttacgga-gctcccctgccgctgctggtgagagccaccagggccgcgac 291
|||||||||||| ||| || || | ||||||| ||||||| || || ||||| || ||
Sbjct: 2758935 gtcgacggcggtgacgcccgcgccgcggccgctgttggtgagggcgacgagggcggccac 2758994
Query: 292 gaggccggcgttgcctgaccagcgtcggctcgttctgcccgaag-tgttgcgcgagtcct 350
||||||||||||||| |||| |||||||||||||||| || || || ||||| |||||
Sbjct: 2758995 gaggccggcgttgccc-accaacgtcggctcgttctgcgcgtaggtgaggcgcgcgtcct 2759053
Query: 351 tgaagccgtcgttcttgtcgggcccgccgaccatggnnnnnnnnagcaggttggggtccg 410
|||| |||||||||||| |||||||||||||||| |||| ||| ||||| |
Sbjct: 2759054 tgaactggtcgttcttgtccggcccgccgaccatggcgccgacgagcacgttcgggtcgg 2759113
Query: 411 ctttcttgctgtcgcgccacttgtagccgccggtgcacgagtacttgacgccgttgtgcg 470
| |||| |||| | ||||||||| |||||||||||||||||||||| |||||||||||
Sbjct: 2759114 cccccttggtgtccctccacttgtacccgccggtgcacgagtacttgatgccgttgtgcg 2759173
Query: 471 gcgtggacgcgccacggtggtgcacgtgccgtgggtacttgctgccgaacccaaccacgt 530
|||| ||||| || | |||||||| |||| |||||||| ||||| |||| |||||||
Sbjct: 2759174 gcgtcgacgcccccctgtggtgcagccgccgcgggtacttcttgccgtaccccaccacgt 2759233
Query: 531 agctcatcttcttggggttgtcaccgagaatgtagtt 567
||||||||||||| ||||| || || |||||||||||
Sbjct: 2759234 agctcatcttcttcgggttatccccaagaatgtagtt 2759270
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 309 bits (156), Expect = 2e-081
Identities = 331/394 (84%), Gaps = 1/394 (0%)
Strand = Plus / Plus
Query: 571 ctgagacctggcgaactcacggaggtcgttggtggtcatgaagtttggaccgcagtacca 630
||||||||||||||| ||||| |||| | ||||||||||| || |||||||||||
Sbjct: 21903463 ctgagacctggcgaaggagcggagatcgtcgacggtcatgaagtaggggccgcagtacca 21903522
Query: 631 gccggggacgttgacggcctccatgtagtcggcgtagagcgcagcgagaaaggagttggc 690
||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 21903523 gccggggacgttgacggactccatgtagtcggcgtagagcgcggcgaggaaggagttggc 21903582
Query: 691 gacgacgtactgcagcggctgccccctgccgtggttgaagagcgccatcccgcccttngg 750
|||| ||||||||||||||| ||| | ||||||||||| |||| | ||| ||||| ||
Sbjct: 21903583 gacggtgtactgcagcggctggcccttcccgtggttgaactgcgcgagcccaccctt-gg 21903641
Query: 751 tgaagttgaaggcggcgaagcccggaaagtacatgcacatgttgaggctggtggcgttgt 810
|||||||||||||| |||||| ||| ||||| |||||||||| | |||||||| |||||
Sbjct: 21903642 tgaagttgaaggcgccgaagcgcgggaagtaggtgcacatgttcatgctggtggtgttgt 21903701
Query: 811 ggtagccggcgagcgannnntcgtacgggtagccggggttgaggaacatgcgcagccgcg 870
|||| ||| |||||| ||||| ||||| || ||||||||||||||||| |||||||
Sbjct: 21903702 ggtacccgatgagcgactcctcgtaggggtaacccgggttgaggaacatgcggagccgcg 21903761
Query: 871 ncagcagcagctgggcgcccgggagctnnnnntcccagctgaacacnnagaagtcgagga 930
||||||||||| ||||||||| |||| ||||||||||| || ||||||||||||
Sbjct: 21903762 acagcagcagctcggcgcccggcagcttgttgtcccagctgaagacggagaagtcgagga 21903821
Query: 931 tgttgangnnnnccttggcgtncttgggcagccg 964
|| || | ||||||||| ||||||||||||
Sbjct: 21903822 tgctgtagaaggccttggcgttcttgggcagccg 21903855
Score = 240 bits (121), Expect = 1e-060
Identities = 330/397 (83%), Gaps = 4/397 (1%)
Strand = Plus / Plus
Query: 173 gacggtggtggcggcgcggcggggaacattgtgcggcacggcggagaacatggtgttctt 232
||||| || ||||||| ||| |||||||| | ||||||||||||||||||||||||||||
Sbjct: 21902975 gacggcggcggcggcgtggccgggaacatgg-gcggcacggcggagaacatggtgttctt 21903033
Query: 233 gtcgacggcggttacgga-gctcccctgccgctgctggtgagagccaccagggccgcgac 291
|||||||||||| ||| || || | ||||||| ||||||| || || ||||| || ||
Sbjct: 21903034 gtcgacggcggtgacgcccgcgccgcggccgctgttggtgagggcgacgagggcggccac 21903093
Query: 292 gaggccggcgttgcctgaccagcgtcggctcgttctgcccgaag-tgttgcgcgagtcct 350
||||||||||||||| |||| |||||||||||||||| || || || ||||| |||||
Sbjct: 21903094 gaggccggcgttgccc-accaacgtcggctcgttctgcgcgtaggtgaggcgcgcgtcct 21903152
Query: 351 tgaagccgtcgttcttgtcgggcccgccgaccatggnnnnnnnnagcaggttggggtccg 410
|||| |||||||||||| |||||||||||||||| |||| ||| ||||| |
Sbjct: 21903153 tgaactggtcgttcttgtccggcccgccgaccatggcgccgacgagcacgttcgggtcgg 21903212
Query: 411 ctttcttgctgtcgcgccacttgtagccgccggtgcacgagtacttgacgccgttgtgcg 470
| |||| |||| | ||||||||| |||||||||||||||||||||| |||||||||||
Sbjct: 21903213 cccccttggtgtccctccacttgtacccgccggtgcacgagtacttgatgccgttgtgcg 21903272
Query: 471 gcgtggacgcgccacggtggtgcacgtgccgtgggtacttgctgccgaacccaaccacgt 530
|||| ||||| || | |||||||| |||| |||||||| ||||| |||| |||||||
Sbjct: 21903273 gcgtcgacgcccccctgtggtgcagccgccgcgggtacttcttgccgtaccccaccacgt 21903332
Query: 531 agctcatcttcttggggttgtcaccgagaatgtagtt 567
||||||||||||| ||||| || || |||||||||||
Sbjct: 21903333 agctcatcttcttcgggttatccccaagaatgtagtt 21903369
>emb|AL606627.3|OSJN00052 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0067K08,
complete sequence
Length = 170765
Score = 309 bits (156), Expect = 2e-081
Identities = 331/394 (84%), Gaps = 1/394 (0%)
Strand = Plus / Plus
Query: 571 ctgagacctggcgaactcacggaggtcgttggtggtcatgaagtttggaccgcagtacca 630
||||||||||||||| ||||| |||| | ||||||||||| || |||||||||||
Sbjct: 101725 ctgagacctggcgaaggagcggagatcgtcgacggtcatgaagtaggggccgcagtacca 101784
Query: 631 gccggggacgttgacggcctccatgtagtcggcgtagagcgcagcgagaaaggagttggc 690
||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 101785 gccggggacgttgacggactccatgtagtcggcgtagagcgcggcgaggaaggagttggc 101844
Query: 691 gacgacgtactgcagcggctgccccctgccgtggttgaagagcgccatcccgcccttngg 750
|||| ||||||||||||||| ||| | ||||||||||| |||| | ||| ||||| ||
Sbjct: 101845 gacggtgtactgcagcggctggcccttcccgtggttgaactgcgcgagcccaccctt-gg 101903
Query: 751 tgaagttgaaggcggcgaagcccggaaagtacatgcacatgttgaggctggtggcgttgt 810
|||||||||||||| |||||| ||| ||||| |||||||||| | |||||||| |||||
Sbjct: 101904 tgaagttgaaggcgccgaagcgcgggaagtaggtgcacatgttcatgctggtggtgttgt 101963
Query: 811 ggtagccggcgagcgannnntcgtacgggtagccggggttgaggaacatgcgcagccgcg 870
|||| ||| |||||| ||||| ||||| || ||||||||||||||||| |||||||
Sbjct: 101964 ggtacccgatgagcgactcctcgtaggggtaacccgggttgaggaacatgcggagccgcg 102023
Query: 871 ncagcagcagctgggcgcccgggagctnnnnntcccagctgaacacnnagaagtcgagga 930
||||||||||| ||||||||| |||| ||||||||||| || ||||||||||||
Sbjct: 102024 acagcagcagctcggcgcccggcagcttgttgtcccagctgaagacggagaagtcgagga 102083
Query: 931 tgttgangnnnnccttggcgtncttgggcagccg 964
|| || | ||||||||| ||||||||||||
Sbjct: 102084 tgctgtagaaggccttggcgttcttgggcagccg 102117
Score = 240 bits (121), Expect = 1e-060
Identities = 330/397 (83%), Gaps = 4/397 (1%)
Strand = Plus / Plus
Query: 173 gacggtggtggcggcgcggcggggaacattgtgcggcacggcggagaacatggtgttctt 232
||||| || ||||||| ||| |||||||| | ||||||||||||||||||||||||||||
Sbjct: 101237 gacggcggcggcggcgtggccgggaacatgg-gcggcacggcggagaacatggtgttctt 101295
Query: 233 gtcgacggcggttacgga-gctcccctgccgctgctggtgagagccaccagggccgcgac 291
|||||||||||| ||| || || | ||||||| ||||||| || || ||||| || ||
Sbjct: 101296 gtcgacggcggtgacgcccgcgccgcggccgctgttggtgagggcgacgagggcggccac 101355
Query: 292 gaggccggcgttgcctgaccagcgtcggctcgttctgcccgaag-tgttgcgcgagtcct 350
||||||||||||||| |||| |||||||||||||||| || || || ||||| |||||
Sbjct: 101356 gaggccggcgttgccc-accaacgtcggctcgttctgcgcgtaggtgaggcgcgcgtcct 101414
Query: 351 tgaagccgtcgttcttgtcgggcccgccgaccatggnnnnnnnnagcaggttggggtccg 410
|||| |||||||||||| |||||||||||||||| |||| ||| ||||| |
Sbjct: 101415 tgaactggtcgttcttgtccggcccgccgaccatggcgccgacgagcacgttcgggtcgg 101474
Query: 411 ctttcttgctgtcgcgccacttgtagccgccggtgcacgagtacttgacgccgttgtgcg 470
| |||| |||| | ||||||||| |||||||||||||||||||||| |||||||||||
Sbjct: 101475 cccccttggtgtccctccacttgtacccgccggtgcacgagtacttgatgccgttgtgcg 101534
Query: 471 gcgtggacgcgccacggtggtgcacgtgccgtgggtacttgctgccgaacccaaccacgt 530
|||| ||||| || | |||||||| |||| |||||||| ||||| |||| |||||||
Sbjct: 101535 gcgtcgacgcccccctgtggtgcagccgccgcgggtacttcttgccgtaccccaccacgt 101594
Query: 531 agctcatcttcttggggttgtcaccgagaatgtagtt 567
||||||||||||| ||||| || || |||||||||||
Sbjct: 101595 agctcatcttcttcgggttatccccaagaatgtagtt 101631
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 309 bits (156), Expect = 2e-081
Identities = 331/394 (84%), Gaps = 1/394 (0%)
Strand = Plus / Plus
Query: 571 ctgagacctggcgaactcacggaggtcgttggtggtcatgaagtttggaccgcagtacca 630
||||||||||||||| ||||| |||| | ||||||||||| || |||||||||||
Sbjct: 24840009 ctgagacctggcgaaggagcggagatcgtcgacggtcatgaagtaggggccgcagtacca 24840068
Query: 631 gccggggacgttgacggcctccatgtagtcggcgtagagcgcagcgagaaaggagttggc 690
||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 24840069 gccggggacgttgacggactccatgtagtcggcgtagagcgcggcgaggaaggagttggc 24840128
Query: 691 gacgacgtactgcagcggctgccccctgccgtggttgaagagcgccatcccgcccttngg 750
|||| ||||||||||||||| ||| | ||||||||||| |||| | ||| ||||| ||
Sbjct: 24840129 gacggtgtactgcagcggctggcccttcccgtggttgaactgcgcgagcccaccctt-gg 24840187
Query: 751 tgaagttgaaggcggcgaagcccggaaagtacatgcacatgttgaggctggtggcgttgt 810
|||||||||||||| |||||| ||| ||||| |||||||||| | |||||||| |||||
Sbjct: 24840188 tgaagttgaaggcgccgaagcgcgggaagtaggtgcacatgttcatgctggtggtgttgt 24840247
Query: 811 ggtagccggcgagcgannnntcgtacgggtagccggggttgaggaacatgcgcagccgcg 870
|||| ||| |||||| ||||| ||||| || ||||||||||||||||| |||||||
Sbjct: 24840248 ggtacccgatgagcgactcctcgtaggggtaacccgggttgaggaacatgcggagccgcg 24840307
Query: 871 ncagcagcagctgggcgcccgggagctnnnnntcccagctgaacacnnagaagtcgagga 930
||||||||||| ||||||||| |||| ||||||||||| || ||||||||||||
Sbjct: 24840308 acagcagcagctcggcgcccggcagcttgttgtcccagctgaagacggagaagtcgagga 24840367
Query: 931 tgttgangnnnnccttggcgtncttgggcagccg 964
|| || | ||||||||| ||||||||||||
Sbjct: 24840368 tgctgtagaaggccttggcgttcttgggcagccg 24840401
Score = 240 bits (121), Expect = 1e-060
Identities = 330/397 (83%), Gaps = 4/397 (1%)
Strand = Plus / Plus
Query: 173 gacggtggtggcggcgcggcggggaacattgtgcggcacggcggagaacatggtgttctt 232
||||| || ||||||| ||| |||||||| | ||||||||||||||||||||||||||||
Sbjct: 24839521 gacggcggcggcggcgtggccgggaacatgg-gcggcacggcggagaacatggtgttctt 24839579
Query: 233 gtcgacggcggttacgga-gctcccctgccgctgctggtgagagccaccagggccgcgac 291
|||||||||||| ||| || || | ||||||| ||||||| || || ||||| || ||
Sbjct: 24839580 gtcgacggcggtgacgcccgcgccgcggccgctgttggtgagggcgacgagggcggccac 24839639
Query: 292 gaggccggcgttgcctgaccagcgtcggctcgttctgcccgaag-tgttgcgcgagtcct 350
||||||||||||||| |||| |||||||||||||||| || || || ||||| |||||
Sbjct: 24839640 gaggccggcgttgccc-accaacgtcggctcgttctgcgcgtaggtgaggcgcgcgtcct 24839698
Query: 351 tgaagccgtcgttcttgtcgggcccgccgaccatggnnnnnnnnagcaggttggggtccg 410
|||| |||||||||||| |||||||||||||||| |||| ||| ||||| |
Sbjct: 24839699 tgaactggtcgttcttgtccggcccgccgaccatggcgccgacgagcacgttcgggtcgg 24839758
Query: 411 ctttcttgctgtcgcgccacttgtagccgccggtgcacgagtacttgacgccgttgtgcg 470
| |||| |||| | ||||||||| |||||||||||||||||||||| |||||||||||
Sbjct: 24839759 cccccttggtgtccctccacttgtacccgccggtgcacgagtacttgatgccgttgtgcg 24839818
Query: 471 gcgtggacgcgccacggtggtgcacgtgccgtgggtacttgctgccgaacccaaccacgt 530
|||| ||||| || | |||||||| |||| |||||||| ||||| |||| |||||||
Sbjct: 24839819 gcgtcgacgcccccctgtggtgcagccgccgcgggtacttcttgccgtaccccaccacgt 24839878
Query: 531 agctcatcttcttggggttgtcaccgagaatgtagtt 567
||||||||||||| ||||| || || |||||||||||
Sbjct: 24839879 agctcatcttcttcgggttatccccaagaatgtagtt 24839915
>dbj|AP005304.1| Oryza sativa (japonica cultivar-group) chromosome 2 clone P0018H03, ***
SEQUENCING IN PROGRESS ***
Length = 155492
Score = 56.0 bits (28), Expect = 4e-005
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 469 cggcgtggacgcgccacggtggtgcacgtgccgtgggtac 508
|||| |||||||||| ||||||||||||||||| ||||||
Sbjct: 141636 cggcatggacgcgccgcggtggtgcacgtgccgcgggtac 141675
>dbj|AK106726.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-114-H03, full
insert sequence
Length = 1693
Score = 56.0 bits (28), Expect = 4e-005
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 469 cggcgtggacgcgccacggtggtgcacgtgccgtgggtac 508
|||| |||||||||| ||||||||||||||||| ||||||
Sbjct: 1343 cggcatggacgcgccgcggtggtgcacgtgccgcgggtac 1304
>dbj|AP006754.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0018H03, complete sequence
Length = 94450
Score = 56.0 bits (28), Expect = 4e-005
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 469 cggcgtggacgcgccacggtggtgcacgtgccgtgggtac 508
|||| |||||||||| ||||||||||||||||| ||||||
Sbjct: 13839 cggcatggacgcgccgcggtggtgcacgtgccgcgggtac 13800
>dbj|AP004885.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0575F10
Length = 150462
Score = 56.0 bits (28), Expect = 4e-005
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 469 cggcgtggacgcgccacggtggtgcacgtgccgtgggtac 508
|||| |||||||||| ||||||||||||||||| ||||||
Sbjct: 70901 cggcatggacgcgccgcggtggtgcacgtgccgcgggtac 70862
>gb|AACV01003235.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg003235, whole
genome shotgun sequence
Length = 26447
Score = 56.0 bits (28), Expect = 4e-005
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 469 cggcgtggacgcgccacggtggtgcacgtgccgtgggtac 508
|||| |||||||||| ||||||||||||||||| ||||||
Sbjct: 1014 cggcatggacgcgccgcggtggtgcacgtgccgcgggtac 1053
>ref|XM_463939.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1693
Score = 56.0 bits (28), Expect = 4e-005
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 469 cggcgtggacgcgccacggtggtgcacgtgccgtgggtac 508
|||| |||||||||| ||||||||||||||||| ||||||
Sbjct: 1343 cggcatggacgcgccgcggtggtgcacgtgccgcgggtac 1304
>ref|NT_107175.1| Oryza sativa (japonica cultivar-group)
Length = 2882457
Score = 56.0 bits (28), Expect = 4e-005
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 469 cggcgtggacgcgccacggtggtgcacgtgccgtgggtac 508
|||| |||||||||| ||||||||||||||||| ||||||
Sbjct: 1239810 cggcatggacgcgccgcggtggtgcacgtgccgcgggtac 1239771
>gb|CH401169.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000006 genomic
scaffold, whole genome shotgun sequence
Length = 13452964
Score = 56.0 bits (28), Expect = 4e-005
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 469 cggcgtggacgcgccacggtggtgcacgtgccgtgggtac 508
|||| |||||||||| ||||||||||||||||| ||||||
Sbjct: 1259253 cggcatggacgcgccgcggtggtgcacgtgccgcgggtac 1259214
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 56.0 bits (28), Expect = 4e-005
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 469 cggcgtggacgcgccacggtggtgcacgtgccgtgggtac 508
|||| |||||||||| ||||||||||||||||| ||||||
Sbjct: 1259253 cggcatggacgcgccgcggtggtgcacgtgccgcgggtac 1259214
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 56.0 bits (28), Expect = 4e-005
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 469 cggcgtggacgcgccacggtggtgcacgtgccgtgggtac 508
|||| |||||||||| ||||||||||||||||| ||||||
Sbjct: 1239810 cggcatggacgcgccgcggtggtgcacgtgccgcgggtac 1239771
>dbj|AK063458.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-115-G09, full
insert sequence
Length = 2206
Score = 44.1 bits (22), Expect = 0.15
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 474 tggacgcgccacggtggtgcacgtgccgtgggta 507
|||||||||| ||||||||||| ||||| |||||
Sbjct: 1365 tggacgcgccgcggtggtgcacctgccgcgggta 1332
>dbj|AK099370.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033048N02, full
insert sequence
Length = 2188
Score = 44.1 bits (22), Expect = 0.15
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 474 tggacgcgccacggtggtgcacgtgccgtgggta 507
|||||||||| ||||||||||| ||||| |||||
Sbjct: 1366 tggacgcgccgcggtggtgcacctgccgcgggta 1333
>gb|AC135914.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
OSJNBa0074P11, complete sequence
Length = 148753
Score = 44.1 bits (22), Expect = 0.15
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 474 tggacgcgccacggtggtgcacgtgccgtgggta 507
|||||||||| ||||||||||| ||||| |||||
Sbjct: 88765 tggacgcgccgcggtggtgcacctgccgcgggta 88798
>gb|AACV01011153.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg011153, whole
genome shotgun sequence
Length = 9671
Score = 44.1 bits (22), Expect = 0.15
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 474 tggacgcgccacggtggtgcacgtgccgtgggta 507
|||||||||| ||||||||||| ||||| |||||
Sbjct: 8948 tggacgcgccgcggtggtgcacctgccgcgggta 8915
>ref|XM_476150.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1890
Score = 44.1 bits (22), Expect = 0.15
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 474 tggacgcgccacggtggtgcacgtgccgtgggta 507
|||||||||| ||||||||||| ||||| |||||
Sbjct: 1279 tggacgcgccgcggtggtgcacctgccgcgggta 1246
>ref|NT_107225.1| Oryza sativa (japonica cultivar-group)
Length = 699699
Score = 44.1 bits (22), Expect = 0.15
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 474 tggacgcgccacggtggtgcacgtgccgtgggta 507
|||||||||| ||||||||||| ||||| |||||
Sbjct: 295865 tggacgcgccgcggtggtgcacctgccgcgggta 295898
>gb|CH401191.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000028 genomic
scaffold, whole genome shotgun sequence
Length = 7678539
Score = 44.1 bits (22), Expect = 0.15
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 474 tggacgcgccacggtggtgcacgtgccgtgggta 507
|||||||||| ||||||||||| ||||| |||||
Sbjct: 6776418 tggacgcgccgcggtggtgcacctgccgcgggta 6776451
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 44.1 bits (22), Expect = 0.15
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 474 tggacgcgccacggtggtgcacgtgccgtgggta 507
|||||||||| ||||||||||| ||||| |||||
Sbjct: 6776418 tggacgcgccgcggtggtgcacctgccgcgggta 6776451
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 44.1 bits (22), Expect = 0.15
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 474 tggacgcgccacggtggtgcacgtgccgtgggta 507
|||||||||| ||||||||||| ||||| |||||
Sbjct: 6857811 tggacgcgccgcggtggtgcacctgccgcgggta 6857844
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,290,563
Number of Sequences: 438736
Number of extensions: 1290563
Number of successful extensions: 10708
Number of sequences better than 0.5: 27
Number of HSP's better than 0.5 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10436
Number of HSP's gapped (non-prelim): 235
length of query: 1046
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1025
effective length of database: 2,791,206,460
effective search space: 2860986621500
effective search space used: 2860986621500
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)