BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 7297169.2.1
(545 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK121728.1| Oryza sativa (japonica cultivar-group) cDNA... 611 e-172
gb|AACV01005523.1| Oryza sativa (japonica cultivar-group) c... 611 e-172
ref|XM_468091.1| Oryza sativa (japonica cultivar-group), mRNA 611 e-172
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 611 e-172
dbj|AP004846.3| Oryza sativa (japonica cultivar-group) geno... 611 e-172
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 611 e-172
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 611 e-172
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 611 e-172
dbj|AK106527.1| Oryza sativa (japonica cultivar-group) cDNA... 603 e-170
gb|CA756295.1|CA756295 BR030039000_PLATE_F05_38_045.ab1 OA ... 599 e-169
gb|CB642755.1|CB642755 OSJNEb03B18.f OSJNEb Oryza sativa (j... 587 e-165
dbj|AK105749.1| Oryza sativa (japonica cultivar-group) cDNA... 133 1e-028
gb|AC109601.9| Oryza sativa chromosome 3 BAC OSJNBa0004G03 ... 133 1e-028
gb|AACV01007281.1| Oryza sativa (japonica cultivar-group) c... 133 1e-028
ref|NT_107174.1| Oryza sativa (japonica cultivar-group) 133 1e-028
gb|AC133860.5| Oryza sativa chromosome 3 BAC OSJNBa0091E13 ... 133 1e-028
gb|CH401174.1| Oryza sativa (japonica cultivar-group) chrom... 133 1e-028
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 133 1e-028
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 133 1e-028
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 133 1e-028
dbj|AK101646.1| Oryza sativa (japonica cultivar-group) cDNA... 129 2e-027
dbj|AK103255.1| Oryza sativa (japonica cultivar-group) cDNA... 129 2e-027
gb|AC084282.6| Oryza sativa chromosome 3 BAC OSJNBb0048A17 ... 129 2e-027
ref|XM_469861.1| Oryza sativa (japonica cultivar-group), mRNA 129 2e-027
ref|NT_107187.1| Oryza sativa (japonica cultivar-group) 129 2e-027
gb|AACV01007964.1| Oryza sativa (japonica cultivar-group) c... 121 4e-025
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 121 4e-025
gb|CB642756.1|CB642756 OSJNEb03B18.r OSJNEb Oryza sativa (j... 96 2e-017
gb|CB674476.1|CB674476 OSJNEe09I19.r OSJNEe Oryza sativa (j... 96 2e-017
gb|AACV01005526.1| Oryza sativa (japonica cultivar-group) c... 88 6e-015
ref|XM_468097.1| Oryza sativa (japonica cultivar-group), mRNA 88 6e-015
dbj|AK070669.1| Oryza sativa (japonica cultivar-group) cDNA... 86 2e-014
ref|XM_468102.1| Oryza sativa (japonica cultivar-group), mRNA 86 2e-014
gb|CD670591.1|CD670591 OsMR006 5MT resistant rice mutant cD... 78 6e-012
dbj|AP003871.3| Oryza sativa (japonica cultivar-group) geno... 70 1e-009
gb|AACV01018612.1| Oryza sativa (japonica cultivar-group) c... 70 1e-009
ref|XM_482712.1| Oryza sativa (japonica cultivar-group), mRNA 70 1e-009
ref|XM_482713.1| Oryza sativa (japonica cultivar-group), mRNA 70 1e-009
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 70 1e-009
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 70 1e-009
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 70 1e-009
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 70 1e-009
dbj|AK100150.1| Oryza sativa (japonica cultivar-group) cDNA... 68 5e-009
gb|AC134239.2| Oryza sativa (japonica cultivar-group) chrom... 68 5e-009
gb|AACV01006195.1| Oryza sativa (japonica cultivar-group) c... 68 5e-009
ref|NT_107190.1| Oryza sativa (japonica cultivar-group) 68 5e-009
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 68 5e-009
gb|CB653552.1|CB653552 OSJNEc04L02.f OSJNEc Oryza sativa (j... 64 8e-008
dbj|AK067138.1| Oryza sativa (japonica cultivar-group) cDNA... 64 8e-008
gb|AC119292.2| Oryza sativa (japonica cultivar-group) chrom... 64 8e-008
gb|AACV01012253.1| Oryza sativa (japonica cultivar-group) c... 64 8e-008
ref|XM_475298.1| Oryza sativa (japonica cultivar-group), p... 64 8e-008
ref|NT_107212.1| Oryza sativa (japonica cultivar-group) 64 8e-008
gb|CH401206.1| Oryza sativa (japonica cultivar-group) chrom... 64 8e-008
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 64 8e-008
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 64 8e-008
gb|AQ914186.1|AQ914186 nbeb0047H03f CUGI Rice BAC Library (... 60 1e-006
dbj|AK069238.1| Oryza sativa (japonica cultivar-group) cDNA... 56 2e-005
gb|AC074232.11| Oryza sativa chromosome 10 BAC OSJNBb0005J1... 56 2e-005
gb|AACV01021967.1| Oryza sativa (japonica cultivar-group) c... 56 2e-005
ref|NM_197437.1| Oryza sativa (japonica cultivar-group) put... 56 2e-005
ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chr... 56 2e-005
gb|CH401254.1| Oryza sativa (japonica cultivar-group) chrom... 56 2e-005
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 56 2e-005
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 56 2e-005
gb|AC078894.11| Oryza sativa (japonica cultivar-group) chro... 56 2e-005
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 56 2e-005
dbj|AK106394.1| Oryza sativa (japonica cultivar-group) cDNA... 54 8e-005
dbj|AP004812.3| Oryza sativa (japonica cultivar-group) geno... 54 8e-005
dbj|AP005570.3| Oryza sativa (japonica cultivar-group) geno... 54 8e-005
gb|AACV01002756.1| Oryza sativa (japonica cultivar-group) c... 54 8e-005
gb|AACV01003559.1| Oryza sativa (japonica cultivar-group) c... 54 8e-005
gb|AACV01020088.1| Oryza sativa (japonica cultivar-group) c... 54 8e-005
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 54 8e-005
ref|NM_190775.1| Oryza sativa (japonica cultivar-group), p... 54 8e-005
ref|XM_464493.1| Oryza sativa (japonica cultivar-group), mRNA 54 8e-005
ref|XM_464494.1| Oryza sativa (japonica cultivar-group), mRNA 54 8e-005
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 54 8e-005
ref|NT_107084.1| Oryza sativa (japonica cultivar-group) 54 8e-005
ref|NT_107177.1| Oryza sativa (japonica cultivar-group) 54 8e-005
dbj|AP003286.3| Oryza sativa (japonica cultivar-group) geno... 54 8e-005
gb|CH401242.1| Oryza sativa (japonica cultivar-group) chrom... 54 8e-005
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 54 8e-005
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 54 8e-005
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 54 8e-005
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 54 8e-005
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 54 8e-005
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 54 8e-005
gb|CB645430.1|CB645430 OSJNEb07B17.f OSJNEb Oryza sativa (j... 52 3e-004
ref|NT_107122.1| Oryza sativa (japonica cultivar-group) 52 3e-004
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 52 3e-004
gb|AC133931.5| Oryza sativa (japonica cultivar-group) chrom... 52 3e-004
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 52 3e-004
gb|CF309530.1|CF309530 ABF--03-M02.b1 ABF3-overexpressing t... 48 0.005
gb|CF311189.1|CF311189 ABF--06-F03.b1 ABF3-overexpressing t... 48 0.005
dbj|AK069220.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.005
gb|AC118980.2| Oryza sativa (japonica cultivar-group) chrom... 48 0.005
gb|AACV01005772.1| Oryza sativa (japonica cultivar-group) c... 48 0.005
gb|AACV01032050.1| Oryza sativa (japonica cultivar-group) C... 48 0.005
ref|NM_187561.1| Oryza sativa (japonica cultivar-group), p... 48 0.005
ref|NT_107183.1| Oryza sativa (japonica cultivar-group) 48 0.005
gb|AU029523.1|AU029523 AU029523 Rice panicle shorter than 3... 46 0.020
gb|AU172547.1|AU172547 AU172547 Rice panicle at flowering s... 46 0.020
gb|CB654153.1|CB654153 OSJNEc05O01.f OSJNEc Oryza sativa (j... 46 0.020
gb|CB679076.1|CB679076 OSJNEf02C05.r OSJNEf Oryza sativa (j... 46 0.020
dbj|AP003867.1| Oryza sativa (japonica cultivar-group) chro... 46 0.020
dbj|AK062271.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.020
dbj|AK071242.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.020
dbj|AK099469.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.020
dbj|AK099470.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.020
dbj|AK105112.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.020
dbj|AK108516.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.020
dbj|AP003884.2| Oryza sativa (japonica cultivar-group) geno... 46 0.020
dbj|AP004759.3| Oryza sativa (japonica cultivar-group) geno... 46 0.020
gb|AC099401.2| Oryza sativa (japonica cultivar-group) chrom... 46 0.020
gb|AACV01005904.1| Oryza sativa (japonica cultivar-group) c... 46 0.020
gb|AACV01009794.1| Oryza sativa (japonica cultivar-group) c... 46 0.020
gb|AACV01018113.1| Oryza sativa (japonica cultivar-group) c... 46 0.020
ref|NM_190776.1| Oryza sativa (japonica cultivar-group), p... 46 0.020
ref|XM_470262.1| Oryza sativa (japonica cultivar-group), p... 46 0.020
ref|XM_472541.1| Oryza sativa (japonica cultivar-group), p... 46 0.020
ref|XM_481633.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.020
ref|NT_079861.2| Oryza sativa (japonica cultivar-group) 46 0.020
ref|NT_079917.2| Oryza sativa (japonica cultivar-group) 46 0.020
gb|CH401189.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.020
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.020
emb|AL606458.5| Oryza sativa genomic DNA, chromosome 4, BAC... 46 0.020
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 46 0.020
gb|AQ857832.1|AQ857832 nbeb0011A10f CUGI Rice BAC Library (... 44 0.077
gb|AQ857958.1|AQ857958 nbeb0011B09f CUGI Rice BAC Library (... 44 0.077
gb|AZ046831.1|AZ046831 nbeb0088O17r CUGI Rice BAC Library (... 44 0.077
dbj|AK110034.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.077
dbj|AK110251.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.077
gb|AC122149.2| Oryza sativa (japonica cultivar-group) chrom... 44 0.077
gb|AACV01002171.1| Oryza sativa (japonica cultivar-group) c... 44 0.077
gb|AACV01005858.1| Oryza sativa (japonica cultivar-group) c... 44 0.077
gb|AACV01010330.1| Oryza sativa (japonica cultivar-group) c... 44 0.077
ref|NM_192217.1| Oryza sativa (japonica cultivar-group), p... 44 0.077
ref|XM_473575.1| Oryza sativa (japonica cultivar-group), p... 44 0.077
ref|NT_079865.2| Oryza sativa (japonica cultivar-group) 44 0.077
dbj|AP003378.4| Oryza sativa (japonica cultivar-group) geno... 44 0.077
dbj|AP003245.4| Oryza sativa (japonica cultivar-group) geno... 44 0.077
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.077
emb|AL606640.4|OSJN00071 Oryza sativa genomic DNA, chromoso... 44 0.077
dbj|AP003944.1| Oryza sativa (japonica cultivar-group) chro... 42 0.31
dbj|AK121053.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.31
dbj|AP003832.3| Oryza sativa (japonica cultivar-group) geno... 42 0.31
dbj|AP003765.5| Oryza sativa (japonica cultivar-group) geno... 42 0.31
ref|NT_107233.1| Oryza sativa (japonica cultivar-group) 42 0.31
dbj|AP004279.1| Oryza sativa (japonica cultivar-group) geno... 42 0.31
dbj|AP003616.4| Oryza sativa (japonica cultivar-group) geno... 42 0.31
gb|AACV01000703.1| Oryza sativa (japonica cultivar-group) c... 42 0.31
gb|AACV01010271.1| Oryza sativa (japonica cultivar-group) c... 42 0.31
gb|AACV01014523.1| Oryza sativa (japonica cultivar-group) c... 42 0.31
ref|XM_473476.1| Oryza sativa (japonica cultivar-group), p... 42 0.31
ref|XM_479321.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.31
ref|NM_188119.1| Oryza sativa (japonica cultivar-group), Oz... 42 0.31
ref|NT_036312.3| Oryza sativa (japonica cultivar-group) 42 0.31
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 42 0.31
dbj|AP000815.1| Oryza sativa (japonica cultivar-group) geno... 42 0.31
dbj|AP001072.1| Oryza sativa (japonica cultivar-group) geno... 42 0.31
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.31
gb|CH401164.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.31
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.31
emb|AL606682.3|OSJN00085 Oryza sativa genomic DNA, chromoso... 42 0.31
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 42 0.31
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 42 0.31
>dbj|AK121728.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033082C22, full
insert sequence
Length = 2653
Score = 611 bits (308), Expect = e-172
Identities = 479/536 (89%)
Strand = Plus / Plus
Query: 1 cacctcgtgccggcgactatggtcgggcagaagttcggcgacaagatcaggtactacgtc 60
|||||||| |||||||| ||||| |||||||| |||||||||||||||| ||||||||||
Sbjct: 1427 cacctcgtcccggcgacaatggtggggcagaaattcggcgacaagatcaagtactacgtc 1486
Query: 61 cagacggacccgtcgccaacggcgaccatcgtgttccgcggcacagtcatcggcaagtcg 120
|||| || |||||||| |||||||||||||||||||| ||||| |||||||| ||||||
Sbjct: 1487 cagagcgatccgtcgccgacggcgaccatcgtgttccggggcacggtcatcgggaagtcg 1546
Query: 121 ccgtcggcgcctcgagtggcggcgttctcgagccgaggccccaactaccgcgcaccggag 180
||||| ||||| || || ||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 1547 ccgtccgcgccgcgcgtcgcggcgttctcgagccggggccccaactaccgcgcgccggag 1606
Query: 181 atcctcaagcccgacgtcatcgccccgggcgtcaacatactcgcggcgtggaccggcgcc 240
||||||||||| |||||||| ||||| ||||||||||| |||||||||||||||||||
Sbjct: 1607 atcctcaagccggacgtcattgcccccggcgtcaacatcctcgcggcgtggaccggcgag 1666
Query: 241 gcctcccccaccgacctggacatcgactcgaggcgcgtggagttcaacatcatctccggc 300
| | ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1667 tctgcgcccaccgacctcgacatcgacccgaggcgcgtggagttcaacatcatctccggc 1726
Query: 301 acgtccatgtcctgcccgcacgtgagcggcctcgccgcgctgctccgccaggcgcacccg 360
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct: 1727 acgtccatgtcgtgcccgcacgtcagcggcctcgccgcgctgctccgccaggcgcaaccg 1786
Query: 361 gagtggagccccgcggcgatcaagtcggcgctcatgaccacggcgtacaacctggacaac 420
|| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1787 gactggagcccggcggcgatcaagtcggcgctcatgaccacggcgtacaacgtggacaac 1846
Query: 421 tccggggaaaccatcaaggacctcgcgacgggcgtggagtcgacgccgttcgtccgtggc 480
||| | | |||||||||||| || || || ||||||||||||||||||||||||
Sbjct: 1847 tccagcgcggtcatcaaggacctggctaccgggaccgagtcgacgccgttcgtccgtggc 1906
Query: 481 gccggtcacgtcgaccccaacgccgccctcgacccaaggctggtgtacgacgccgg 536
||||| ||||||||||||||| ||| |||||||| | || ||||||||||||||
Sbjct: 1907 gccggccacgtcgaccccaaccgcgcgctcgaccctggcctcgtgtacgacgccgg 1962
>gb|AACV01005523.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005523, whole
genome shotgun sequence
Length = 45353
Score = 611 bits (308), Expect = e-172
Identities = 479/536 (89%)
Strand = Plus / Plus
Query: 1 cacctcgtgccggcgactatggtcgggcagaagttcggcgacaagatcaggtactacgtc 60
|||||||| |||||||| ||||| |||||||| |||||||||||||||| ||||||||||
Sbjct: 20574 cacctcgtcccggcgacaatggtggggcagaaattcggcgacaagatcaagtactacgtc 20633
Query: 61 cagacggacccgtcgccaacggcgaccatcgtgttccgcggcacagtcatcggcaagtcg 120
|||| || |||||||| |||||||||||||||||||| ||||| |||||||| ||||||
Sbjct: 20634 cagagcgatccgtcgccgacggcgaccatcgtgttccggggcacggtcatcgggaagtcg 20693
Query: 121 ccgtcggcgcctcgagtggcggcgttctcgagccgaggccccaactaccgcgcaccggag 180
||||| ||||| || || ||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 20694 ccgtccgcgccgcgcgtcgcggcgttctcgagccggggccccaactaccgcgcgccggag 20753
Query: 181 atcctcaagcccgacgtcatcgccccgggcgtcaacatactcgcggcgtggaccggcgcc 240
||||||||||| |||||||| ||||| ||||||||||| |||||||||||||||||||
Sbjct: 20754 atcctcaagccggacgtcattgcccccggcgtcaacatcctcgcggcgtggaccggcgag 20813
Query: 241 gcctcccccaccgacctggacatcgactcgaggcgcgtggagttcaacatcatctccggc 300
| | ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 20814 tctgcgcccaccgacctcgacatcgacccgaggcgcgtggagttcaacatcatctccggc 20873
Query: 301 acgtccatgtcctgcccgcacgtgagcggcctcgccgcgctgctccgccaggcgcacccg 360
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct: 20874 acgtccatgtcgtgcccgcacgtcagcggcctcgccgcgctgctccgccaggcgcaaccg 20933
Query: 361 gagtggagccccgcggcgatcaagtcggcgctcatgaccacggcgtacaacctggacaac 420
|| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 20934 gactggagcccggcggcgatcaagtcggcgctcatgaccacggcgtacaacgtggacaac 20993
Query: 421 tccggggaaaccatcaaggacctcgcgacgggcgtggagtcgacgccgttcgtccgtggc 480
||| | | |||||||||||| || || || ||||||||||||||||||||||||
Sbjct: 20994 tccagcgcggtcatcaaggacctggctaccgggaccgagtcgacgccgttcgtccgtggc 21053
Query: 481 gccggtcacgtcgaccccaacgccgccctcgacccaaggctggtgtacgacgccgg 536
||||| ||||||||||||||| ||| |||||||| | || ||||||||||||||
Sbjct: 21054 gccggccacgtcgaccccaaccgcgcgctcgaccctggcctcgtgtacgacgccgg 21109
Score = 97.6 bits (49), Expect = 6e-018
Identities = 139/169 (82%)
Strand = Plus / Minus
Query: 175 ccggagatcctcaagcccgacgtcatcgccccgggcgtcaacatactcgcggcgtggacc 234
||||||||||||||||||||| | ||||||| ||||||| ||| ||||| |||||| ||
Sbjct: 24197 ccggagatcctcaagcccgaccttgtcgcccccggcgtcagcatcctcgccgcgtggtcc 24138
Query: 235 ggcgccgcctcccccaccgacctggacatcgactcgaggcgcgtggagttcaacatcatc 294
||| || ||| || ||||| || ||| ||||| |||||||||| ||||||||||| |
Sbjct: 24137 ggcctcgtctcgccaaccgaactcgacgtcgacacgaggcgcgtcaagttcaacatcttg 24078
Query: 295 tccggcacgtccatgtcctgcccgcacgtgagcggcctcgccgcgctgc 343
||||| || ||| | |||||||||||||||||| |||| |||||||
Sbjct: 24077 tccggtacatccgccgcgtgcccgcacgtgagcggcgtcgctgcgctgc 24029
Score = 85.7 bits (43), Expect = 2e-014
Identities = 67/75 (89%)
Strand = Plus / Plus
Query: 261 catcgactcgaggcgcgtggagttcaacatcatctccggcacgtccatgtcctgcccgca 320
||||||| ||||||| || ||||||||||||||||| |||||||||||| | ||||| ||
Sbjct: 1507 catcgacacgaggcgtgtcgagttcaacatcatctctggcacgtccatggcgtgccctca 1566
Query: 321 cgtgagcggcctcgc 335
|||||||||| ||||
Sbjct: 1567 cgtgagcggcatcgc 1581
Score = 58.0 bits (29), Expect = 5e-006
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 364 tggagccccgcggcgatcaagtcggcgctcatgaccacggcgtacaacctggacaac 420
|||||||| ||||||||||||||||| || ||||| || || |||||| ||||||||
Sbjct: 12272 tggagcccggcggcgatcaagtcggccctgatgacgacagcctacaacgtggacaac 12328
>ref|XM_468091.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2653
Score = 611 bits (308), Expect = e-172
Identities = 479/536 (89%)
Strand = Plus / Plus
Query: 1 cacctcgtgccggcgactatggtcgggcagaagttcggcgacaagatcaggtactacgtc 60
|||||||| |||||||| ||||| |||||||| |||||||||||||||| ||||||||||
Sbjct: 1427 cacctcgtcccggcgacaatggtggggcagaaattcggcgacaagatcaagtactacgtc 1486
Query: 61 cagacggacccgtcgccaacggcgaccatcgtgttccgcggcacagtcatcggcaagtcg 120
|||| || |||||||| |||||||||||||||||||| ||||| |||||||| ||||||
Sbjct: 1487 cagagcgatccgtcgccgacggcgaccatcgtgttccggggcacggtcatcgggaagtcg 1546
Query: 121 ccgtcggcgcctcgagtggcggcgttctcgagccgaggccccaactaccgcgcaccggag 180
||||| ||||| || || ||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 1547 ccgtccgcgccgcgcgtcgcggcgttctcgagccggggccccaactaccgcgcgccggag 1606
Query: 181 atcctcaagcccgacgtcatcgccccgggcgtcaacatactcgcggcgtggaccggcgcc 240
||||||||||| |||||||| ||||| ||||||||||| |||||||||||||||||||
Sbjct: 1607 atcctcaagccggacgtcattgcccccggcgtcaacatcctcgcggcgtggaccggcgag 1666
Query: 241 gcctcccccaccgacctggacatcgactcgaggcgcgtggagttcaacatcatctccggc 300
| | ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1667 tctgcgcccaccgacctcgacatcgacccgaggcgcgtggagttcaacatcatctccggc 1726
Query: 301 acgtccatgtcctgcccgcacgtgagcggcctcgccgcgctgctccgccaggcgcacccg 360
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct: 1727 acgtccatgtcgtgcccgcacgtcagcggcctcgccgcgctgctccgccaggcgcaaccg 1786
Query: 361 gagtggagccccgcggcgatcaagtcggcgctcatgaccacggcgtacaacctggacaac 420
|| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1787 gactggagcccggcggcgatcaagtcggcgctcatgaccacggcgtacaacgtggacaac 1846
Query: 421 tccggggaaaccatcaaggacctcgcgacgggcgtggagtcgacgccgttcgtccgtggc 480
||| | | |||||||||||| || || || ||||||||||||||||||||||||
Sbjct: 1847 tccagcgcggtcatcaaggacctggctaccgggaccgagtcgacgccgttcgtccgtggc 1906
Query: 481 gccggtcacgtcgaccccaacgccgccctcgacccaaggctggtgtacgacgccgg 536
||||| ||||||||||||||| ||| |||||||| | || ||||||||||||||
Sbjct: 1907 gccggccacgtcgaccccaaccgcgcgctcgaccctggcctcgtgtacgacgccgg 1962
>ref|NT_107181.1| Oryza sativa (japonica cultivar-group)
Length = 9248309
Score = 611 bits (308), Expect = e-172
Identities = 479/536 (89%)
Strand = Plus / Minus
Query: 1 cacctcgtgccggcgactatggtcgggcagaagttcggcgacaagatcaggtactacgtc 60
|||||||| |||||||| ||||| |||||||| |||||||||||||||| ||||||||||
Sbjct: 8169912 cacctcgtcccggcgacaatggtggggcagaaattcggcgacaagatcaagtactacgtc 8169853
Query: 61 cagacggacccgtcgccaacggcgaccatcgtgttccgcggcacagtcatcggcaagtcg 120
|||| || |||||||| |||||||||||||||||||| ||||| |||||||| ||||||
Sbjct: 8169852 cagagcgatccgtcgccgacggcgaccatcgtgttccggggcacggtcatcgggaagtcg 8169793
Query: 121 ccgtcggcgcctcgagtggcggcgttctcgagccgaggccccaactaccgcgcaccggag 180
||||| ||||| || || ||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 8169792 ccgtccgcgccgcgcgtcgcggcgttctcgagccggggccccaactaccgcgcgccggag 8169733
Query: 181 atcctcaagcccgacgtcatcgccccgggcgtcaacatactcgcggcgtggaccggcgcc 240
||||||||||| |||||||| ||||| ||||||||||| |||||||||||||||||||
Sbjct: 8169732 atcctcaagccggacgtcattgcccccggcgtcaacatcctcgcggcgtggaccggcgag 8169673
Query: 241 gcctcccccaccgacctggacatcgactcgaggcgcgtggagttcaacatcatctccggc 300
| | ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 8169672 tctgcgcccaccgacctcgacatcgacccgaggcgcgtggagttcaacatcatctccggc 8169613
Query: 301 acgtccatgtcctgcccgcacgtgagcggcctcgccgcgctgctccgccaggcgcacccg 360
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct: 8169612 acgtccatgtcgtgcccgcacgtcagcggcctcgccgcgctgctccgccaggcgcaaccg 8169553
Query: 361 gagtggagccccgcggcgatcaagtcggcgctcatgaccacggcgtacaacctggacaac 420
|| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 8169552 gactggagcccggcggcgatcaagtcggcgctcatgaccacggcgtacaacgtggacaac 8169493
Query: 421 tccggggaaaccatcaaggacctcgcgacgggcgtggagtcgacgccgttcgtccgtggc 480
||| | | |||||||||||| || || || ||||||||||||||||||||||||
Sbjct: 8169492 tccagcgcggtcatcaaggacctggctaccgggaccgagtcgacgccgttcgtccgtggc 8169433
Query: 481 gccggtcacgtcgaccccaacgccgccctcgacccaaggctggtgtacgacgccgg 536
||||| ||||||||||||||| ||| |||||||| | || ||||||||||||||
Sbjct: 8169432 gccggccacgtcgaccccaaccgcgcgctcgaccctggcctcgtgtacgacgccgg 8169377
Score = 97.6 bits (49), Expect = 6e-018
Identities = 139/169 (82%)
Strand = Plus / Plus
Query: 175 ccggagatcctcaagcccgacgtcatcgccccgggcgtcaacatactcgcggcgtggacc 234
||||||||||||||||||||| | ||||||| ||||||| ||| ||||| |||||| ||
Sbjct: 8166289 ccggagatcctcaagcccgaccttgtcgcccccggcgtcagcatcctcgccgcgtggtcc 8166348
Query: 235 ggcgccgcctcccccaccgacctggacatcgactcgaggcgcgtggagttcaacatcatc 294
||| || ||| || ||||| || ||| ||||| |||||||||| ||||||||||| |
Sbjct: 8166349 ggcctcgtctcgccaaccgaactcgacgtcgacacgaggcgcgtcaagttcaacatcttg 8166408
Query: 295 tccggcacgtccatgtcctgcccgcacgtgagcggcctcgccgcgctgc 343
||||| || ||| | |||||||||||||||||| |||| |||||||
Sbjct: 8166409 tccggtacatccgccgcgtgcccgcacgtgagcggcgtcgctgcgctgc 8166457
Score = 87.7 bits (44), Expect = 6e-015
Identities = 62/68 (91%)
Strand = Plus / Minus
Query: 271 aggcgcgtggagttcaacatcatctccggcacgtccatgtcctgcccgcacgtgagcggc 330
|||||||| |||||||||||||||||||||||||||||| | |||| |||| ||||||||
Sbjct: 8192698 aggcgcgtcgagttcaacatcatctccggcacgtccatggcgtgcctgcacatgagcggc 8192639
Query: 331 ctcgccgc 338
|||||||
Sbjct: 8192638 atcgccgc 8192631
Score = 85.7 bits (43), Expect = 2e-014
Identities = 67/75 (89%)
Strand = Plus / Minus
Query: 261 catcgactcgaggcgcgtggagttcaacatcatctccggcacgtccatgtcctgcccgca 320
||||||| ||||||| || ||||||||||||||||| |||||||||||| | ||||| ||
Sbjct: 8229799 catcgacacgaggcgtgtcgagttcaacatcatctctggcacgtccatggcgtgccctca 8229740
Query: 321 cgtgagcggcctcgc 335
|||||||||| ||||
Sbjct: 8229739 cgtgagcggcatcgc 8229725
Score = 58.0 bits (29), Expect = 5e-006
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 364 tggagccccgcggcgatcaagtcggcgctcatgaccacggcgtacaacctggacaac 420
|||||||| ||||||||||||||||| || ||||| || || |||||| ||||||||
Sbjct: 8219035 tggagcccggcggcgatcaagtcggccctgatgacgacagcctacaacgtggacaac 8218979
Score = 46.1 bits (23), Expect = 0.020
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 178 gagatcctcaagcccgacgtcatcgccccgggcgtcaacatactcgcggcgtggaccgg 236
|||||||||||||||||| | || ||||| || ||| |||| ||||| || ||||||||
Sbjct: 8192794 gagatcctcaagcccgacatgattgcccccggtgtcgacatcctcgctgcatggaccgg 8192736
>dbj|AP004846.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1293_A01
Length = 139121
Score = 611 bits (308), Expect = e-172
Identities = 479/536 (89%)
Strand = Plus / Minus
Query: 1 cacctcgtgccggcgactatggtcgggcagaagttcggcgacaagatcaggtactacgtc 60
|||||||| |||||||| ||||| |||||||| |||||||||||||||| ||||||||||
Sbjct: 50853 cacctcgtcccggcgacaatggtggggcagaaattcggcgacaagatcaagtactacgtc 50794
Query: 61 cagacggacccgtcgccaacggcgaccatcgtgttccgcggcacagtcatcggcaagtcg 120
|||| || |||||||| |||||||||||||||||||| ||||| |||||||| ||||||
Sbjct: 50793 cagagcgatccgtcgccgacggcgaccatcgtgttccggggcacggtcatcgggaagtcg 50734
Query: 121 ccgtcggcgcctcgagtggcggcgttctcgagccgaggccccaactaccgcgcaccggag 180
||||| ||||| || || ||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 50733 ccgtccgcgccgcgcgtcgcggcgttctcgagccggggccccaactaccgcgcgccggag 50674
Query: 181 atcctcaagcccgacgtcatcgccccgggcgtcaacatactcgcggcgtggaccggcgcc 240
||||||||||| |||||||| ||||| ||||||||||| |||||||||||||||||||
Sbjct: 50673 atcctcaagccggacgtcattgcccccggcgtcaacatcctcgcggcgtggaccggcgag 50614
Query: 241 gcctcccccaccgacctggacatcgactcgaggcgcgtggagttcaacatcatctccggc 300
| | ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 50613 tctgcgcccaccgacctcgacatcgacccgaggcgcgtggagttcaacatcatctccggc 50554
Query: 301 acgtccatgtcctgcccgcacgtgagcggcctcgccgcgctgctccgccaggcgcacccg 360
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct: 50553 acgtccatgtcgtgcccgcacgtcagcggcctcgccgcgctgctccgccaggcgcaaccg 50494
Query: 361 gagtggagccccgcggcgatcaagtcggcgctcatgaccacggcgtacaacctggacaac 420
|| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 50493 gactggagcccggcggcgatcaagtcggcgctcatgaccacggcgtacaacgtggacaac 50434
Query: 421 tccggggaaaccatcaaggacctcgcgacgggcgtggagtcgacgccgttcgtccgtggc 480
||| | | |||||||||||| || || || ||||||||||||||||||||||||
Sbjct: 50433 tccagcgcggtcatcaaggacctggctaccgggaccgagtcgacgccgttcgtccgtggc 50374
Query: 481 gccggtcacgtcgaccccaacgccgccctcgacccaaggctggtgtacgacgccgg 536
||||| ||||||||||||||| ||| |||||||| | || ||||||||||||||
Sbjct: 50373 gccggccacgtcgaccccaaccgcgcgctcgaccctggcctcgtgtacgacgccgg 50318
Score = 97.6 bits (49), Expect = 6e-018
Identities = 139/169 (82%)
Strand = Plus / Plus
Query: 175 ccggagatcctcaagcccgacgtcatcgccccgggcgtcaacatactcgcggcgtggacc 234
||||||||||||||||||||| | ||||||| ||||||| ||| ||||| |||||| ||
Sbjct: 47230 ccggagatcctcaagcccgaccttgtcgcccccggcgtcagcatcctcgccgcgtggtcc 47289
Query: 235 ggcgccgcctcccccaccgacctggacatcgactcgaggcgcgtggagttcaacatcatc 294
||| || ||| || ||||| || ||| ||||| |||||||||| ||||||||||| |
Sbjct: 47290 ggcctcgtctcgccaaccgaactcgacgtcgacacgaggcgcgtcaagttcaacatcttg 47349
Query: 295 tccggcacgtccatgtcctgcccgcacgtgagcggcctcgccgcgctgc 343
||||| || ||| | |||||||||||||||||| |||| |||||||
Sbjct: 47350 tccggtacatccgccgcgtgcccgcacgtgagcggcgtcgctgcgctgc 47398
Score = 87.7 bits (44), Expect = 6e-015
Identities = 62/68 (91%)
Strand = Plus / Minus
Query: 271 aggcgcgtggagttcaacatcatctccggcacgtccatgtcctgcccgcacgtgagcggc 330
|||||||| |||||||||||||||||||||||||||||| | |||| |||| ||||||||
Sbjct: 73639 aggcgcgtcgagttcaacatcatctccggcacgtccatggcgtgcctgcacatgagcggc 73580
Query: 331 ctcgccgc 338
|||||||
Sbjct: 73579 atcgccgc 73572
Score = 85.7 bits (43), Expect = 2e-014
Identities = 67/75 (89%)
Strand = Plus / Minus
Query: 261 catcgactcgaggcgcgtggagttcaacatcatctccggcacgtccatgtcctgcccgca 320
||||||| ||||||| || ||||||||||||||||| |||||||||||| | ||||| ||
Sbjct: 110740 catcgacacgaggcgtgtcgagttcaacatcatctctggcacgtccatggcgtgccctca 110681
Query: 321 cgtgagcggcctcgc 335
|||||||||| ||||
Sbjct: 110680 cgtgagcggcatcgc 110666
Score = 58.0 bits (29), Expect = 5e-006
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 364 tggagccccgcggcgatcaagtcggcgctcatgaccacggcgtacaacctggacaac 420
|||||||| ||||||||||||||||| || ||||| || || |||||| ||||||||
Sbjct: 99976 tggagcccggcggcgatcaagtcggccctgatgacgacagcctacaacgtggacaac 99920
Score = 46.1 bits (23), Expect = 0.020
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 178 gagatcctcaagcccgacgtcatcgccccgggcgtcaacatactcgcggcgtggaccgg 236
|||||||||||||||||| | || ||||| || ||| |||| ||||| || ||||||||
Sbjct: 73735 gagatcctcaagcccgacatgattgcccccggtgtcgacatcctcgctgcatggaccgg 73677
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 611 bits (308), Expect = e-172
Identities = 479/536 (89%)
Strand = Plus / Minus
Query: 1 cacctcgtgccggcgactatggtcgggcagaagttcggcgacaagatcaggtactacgtc 60
|||||||| |||||||| ||||| |||||||| |||||||||||||||| ||||||||||
Sbjct: 19644544 cacctcgtcccggcgacaatggtggggcagaaattcggcgacaagatcaagtactacgtc 19644485
Query: 61 cagacggacccgtcgccaacggcgaccatcgtgttccgcggcacagtcatcggcaagtcg 120
|||| || |||||||| |||||||||||||||||||| ||||| |||||||| ||||||
Sbjct: 19644484 cagagcgatccgtcgccgacggcgaccatcgtgttccggggcacggtcatcgggaagtcg 19644425
Query: 121 ccgtcggcgcctcgagtggcggcgttctcgagccgaggccccaactaccgcgcaccggag 180
||||| ||||| || || ||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 19644424 ccgtccgcgccgcgcgtcgcggcgttctcgagccggggccccaactaccgcgcgccggag 19644365
Query: 181 atcctcaagcccgacgtcatcgccccgggcgtcaacatactcgcggcgtggaccggcgcc 240
||||||||||| |||||||| ||||| ||||||||||| |||||||||||||||||||
Sbjct: 19644364 atcctcaagccggacgtcattgcccccggcgtcaacatcctcgcggcgtggaccggcgag 19644305
Query: 241 gcctcccccaccgacctggacatcgactcgaggcgcgtggagttcaacatcatctccggc 300
| | ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 19644304 tctgcgcccaccgacctcgacatcgacccgaggcgcgtggagttcaacatcatctccggc 19644245
Query: 301 acgtccatgtcctgcccgcacgtgagcggcctcgccgcgctgctccgccaggcgcacccg 360
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct: 19644244 acgtccatgtcgtgcccgcacgtcagcggcctcgccgcgctgctccgccaggcgcaaccg 19644185
Query: 361 gagtggagccccgcggcgatcaagtcggcgctcatgaccacggcgtacaacctggacaac 420
|| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 19644184 gactggagcccggcggcgatcaagtcggcgctcatgaccacggcgtacaacgtggacaac 19644125
Query: 421 tccggggaaaccatcaaggacctcgcgacgggcgtggagtcgacgccgttcgtccgtggc 480
||| | | |||||||||||| || || || ||||||||||||||||||||||||
Sbjct: 19644124 tccagcgcggtcatcaaggacctggctaccgggaccgagtcgacgccgttcgtccgtggc 19644065
Query: 481 gccggtcacgtcgaccccaacgccgccctcgacccaaggctggtgtacgacgccgg 536
||||| ||||||||||||||| ||| |||||||| | || ||||||||||||||
Sbjct: 19644064 gccggccacgtcgaccccaaccgcgcgctcgaccctggcctcgtgtacgacgccgg 19644009
Score = 97.6 bits (49), Expect = 6e-018
Identities = 139/169 (82%)
Strand = Plus / Plus
Query: 175 ccggagatcctcaagcccgacgtcatcgccccgggcgtcaacatactcgcggcgtggacc 234
||||||||||||||||||||| | ||||||| ||||||| ||| ||||| |||||| ||
Sbjct: 19640921 ccggagatcctcaagcccgaccttgtcgcccccggcgtcagcatcctcgccgcgtggtcc 19640980
Query: 235 ggcgccgcctcccccaccgacctggacatcgactcgaggcgcgtggagttcaacatcatc 294
||| || ||| || ||||| || ||| ||||| |||||||||| ||||||||||| |
Sbjct: 19640981 ggcctcgtctcgccaaccgaactcgacgtcgacacgaggcgcgtcaagttcaacatcttg 19641040
Query: 295 tccggcacgtccatgtcctgcccgcacgtgagcggcctcgccgcgctgc 343
||||| || ||| | |||||||||||||||||| |||| |||||||
Sbjct: 19641041 tccggtacatccgccgcgtgcccgcacgtgagcggcgtcgctgcgctgc 19641089
Score = 87.7 bits (44), Expect = 6e-015
Identities = 62/68 (91%)
Strand = Plus / Minus
Query: 271 aggcgcgtggagttcaacatcatctccggcacgtccatgtcctgcccgcacgtgagcggc 330
|||||||| |||||||||||||||||||||||||||||| | |||| |||| ||||||||
Sbjct: 19674922 aggcgcgtcgagttcaacatcatctccggcacgtccatggcgtgcctgcacatgagcggc 19674863
Query: 331 ctcgccgc 338
|||||||
Sbjct: 19674862 atcgccgc 19674855
Score = 85.7 bits (43), Expect = 2e-014
Identities = 67/75 (89%)
Strand = Plus / Minus
Query: 261 catcgactcgaggcgcgtggagttcaacatcatctccggcacgtccatgtcctgcccgca 320
||||||| ||||||| || ||||||||||||||||| |||||||||||| | ||||| ||
Sbjct: 19663611 catcgacacgaggcgtgtcgagttcaacatcatctctggcacgtccatggcgtgccctca 19663552
Query: 321 cgtgagcggcctcgc 335
|||||||||| ||||
Sbjct: 19663551 cgtgagcggcatcgc 19663537
Score = 58.0 bits (29), Expect = 5e-006
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 364 tggagccccgcggcgatcaagtcggcgctcatgaccacggcgtacaacctggacaac 420
|||||||| ||||||||||||||||| || ||||| || || |||||| ||||||||
Sbjct: 19652846 tggagcccggcggcgatcaagtcggccctgatgacgacagcctacaacgtggacaac 19652790
Score = 46.1 bits (23), Expect = 0.020
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 178 gagatcctcaagcccgacgtcatcgccccgggcgtcaacatactcgcggcgtggaccgg 236
|||||||||||||||||| | || ||||| || ||| |||| ||||| || ||||||||
Sbjct: 19675018 gagatcctcaagcccgacatgattgcccccggtgtcgacatcctcgctgcatggaccgg 19674960
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 611 bits (308), Expect = e-172
Identities = 479/536 (89%)
Strand = Plus / Minus
Query: 1 cacctcgtgccggcgactatggtcgggcagaagttcggcgacaagatcaggtactacgtc 60
|||||||| |||||||| ||||| |||||||| |||||||||||||||| ||||||||||
Sbjct: 33097608 cacctcgtcccggcgacaatggtggggcagaaattcggcgacaagatcaagtactacgtc 33097549
Query: 61 cagacggacccgtcgccaacggcgaccatcgtgttccgcggcacagtcatcggcaagtcg 120
|||| || |||||||| |||||||||||||||||||| ||||| |||||||| ||||||
Sbjct: 33097548 cagagcgatccgtcgccgacggcgaccatcgtgttccggggcacggtcatcgggaagtcg 33097489
Query: 121 ccgtcggcgcctcgagtggcggcgttctcgagccgaggccccaactaccgcgcaccggag 180
||||| ||||| || || ||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 33097488 ccgtccgcgccgcgcgtcgcggcgttctcgagccggggccccaactaccgcgcgccggag 33097429
Query: 181 atcctcaagcccgacgtcatcgccccgggcgtcaacatactcgcggcgtggaccggcgcc 240
||||||||||| |||||||| ||||| ||||||||||| |||||||||||||||||||
Sbjct: 33097428 atcctcaagccggacgtcattgcccccggcgtcaacatcctcgcggcgtggaccggcgag 33097369
Query: 241 gcctcccccaccgacctggacatcgactcgaggcgcgtggagttcaacatcatctccggc 300
| | ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 33097368 tctgcgcccaccgacctcgacatcgacccgaggcgcgtggagttcaacatcatctccggc 33097309
Query: 301 acgtccatgtcctgcccgcacgtgagcggcctcgccgcgctgctccgccaggcgcacccg 360
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct: 33097308 acgtccatgtcgtgcccgcacgtcagcggcctcgccgcgctgctccgccaggcgcaaccg 33097249
Query: 361 gagtggagccccgcggcgatcaagtcggcgctcatgaccacggcgtacaacctggacaac 420
|| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 33097248 gactggagcccggcggcgatcaagtcggcgctcatgaccacggcgtacaacgtggacaac 33097189
Query: 421 tccggggaaaccatcaaggacctcgcgacgggcgtggagtcgacgccgttcgtccgtggc 480
||| | | |||||||||||| || || || ||||||||||||||||||||||||
Sbjct: 33097188 tccagcgcggtcatcaaggacctggctaccgggaccgagtcgacgccgttcgtccgtggc 33097129
Query: 481 gccggtcacgtcgaccccaacgccgccctcgacccaaggctggtgtacgacgccgg 536
||||| ||||||||||||||| ||| |||||||| | || ||||||||||||||
Sbjct: 33097128 gccggccacgtcgaccccaaccgcgcgctcgaccctggcctcgtgtacgacgccgg 33097073
Score = 97.6 bits (49), Expect = 6e-018
Identities = 139/169 (82%)
Strand = Plus / Plus
Query: 175 ccggagatcctcaagcccgacgtcatcgccccgggcgtcaacatactcgcggcgtggacc 234
||||||||||||||||||||| | ||||||| ||||||| ||| ||||| |||||| ||
Sbjct: 33093985 ccggagatcctcaagcccgaccttgtcgcccccggcgtcagcatcctcgccgcgtggtcc 33094044
Query: 235 ggcgccgcctcccccaccgacctggacatcgactcgaggcgcgtggagttcaacatcatc 294
||| || ||| || ||||| || ||| ||||| |||||||||| ||||||||||| |
Sbjct: 33094045 ggcctcgtctcgccaaccgaactcgacgtcgacacgaggcgcgtcaagttcaacatcttg 33094104
Query: 295 tccggcacgtccatgtcctgcccgcacgtgagcggcctcgccgcgctgc 343
||||| || ||| | |||||||||||||||||| |||| |||||||
Sbjct: 33094105 tccggtacatccgccgcgtgcccgcacgtgagcggcgtcgctgcgctgc 33094153
Score = 87.7 bits (44), Expect = 6e-015
Identities = 62/68 (91%)
Strand = Plus / Minus
Query: 271 aggcgcgtggagttcaacatcatctccggcacgtccatgtcctgcccgcacgtgagcggc 330
|||||||| |||||||||||||||||||||||||||||| | |||| |||| ||||||||
Sbjct: 33127986 aggcgcgtcgagttcaacatcatctccggcacgtccatggcgtgcctgcacatgagcggc 33127927
Query: 331 ctcgccgc 338
|||||||
Sbjct: 33127926 atcgccgc 33127919
Score = 85.7 bits (43), Expect = 2e-014
Identities = 67/75 (89%)
Strand = Plus / Minus
Query: 261 catcgactcgaggcgcgtggagttcaacatcatctccggcacgtccatgtcctgcccgca 320
||||||| ||||||| || ||||||||||||||||| |||||||||||| | ||||| ||
Sbjct: 33116675 catcgacacgaggcgtgtcgagttcaacatcatctctggcacgtccatggcgtgccctca 33116616
Query: 321 cgtgagcggcctcgc 335
|||||||||| ||||
Sbjct: 33116615 cgtgagcggcatcgc 33116601
Score = 58.0 bits (29), Expect = 5e-006
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 364 tggagccccgcggcgatcaagtcggcgctcatgaccacggcgtacaacctggacaac 420
|||||||| ||||||||||||||||| || ||||| || || |||||| ||||||||
Sbjct: 33105910 tggagcccggcggcgatcaagtcggccctgatgacgacagcctacaacgtggacaac 33105854
Score = 54.0 bits (27), Expect = 8e-005
Identities = 87/107 (81%)
Strand = Plus / Minus
Query: 295 tccggcacgtccatgtcctgcccgcacgtgagcggcctcgccgcgctgctccgccaggcg 354
||||| ||||||||||| ||||||||||| |||| ||| || ||||||||| | |
Sbjct: 5634422 tccgggacgtccatgtcgtgcccgcacgtcgccggcgtcgtcggcctgctccgcacgctg 5634363
Query: 355 cacccggagtggagccccgcggcgatcaagtcggcgctcatgaccac 401
| ||| || |||||||||||||||||| || ||||||||||||||
Sbjct: 5634362 cgccccgactggagccccgcggcgatccgctccgcgctcatgaccac 5634316
Score = 46.1 bits (23), Expect = 0.020
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 178 gagatcctcaagcccgacgtcatcgccccgggcgtcaacatactcgcggcgtggaccgg 236
|||||||||||||||||| | || ||||| || ||| |||| ||||| || ||||||||
Sbjct: 33128082 gagatcctcaagcccgacatgattgcccccggtgtcgacatcctcgctgcatggaccgg 33128024
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 611 bits (308), Expect = e-172
Identities = 479/536 (89%)
Strand = Plus / Minus
Query: 1 cacctcgtgccggcgactatggtcgggcagaagttcggcgacaagatcaggtactacgtc 60
|||||||| |||||||| ||||| |||||||| |||||||||||||||| ||||||||||
Sbjct: 33004913 cacctcgtcccggcgacaatggtggggcagaaattcggcgacaagatcaagtactacgtc 33004854
Query: 61 cagacggacccgtcgccaacggcgaccatcgtgttccgcggcacagtcatcggcaagtcg 120
|||| || |||||||| |||||||||||||||||||| ||||| |||||||| ||||||
Sbjct: 33004853 cagagcgatccgtcgccgacggcgaccatcgtgttccggggcacggtcatcgggaagtcg 33004794
Query: 121 ccgtcggcgcctcgagtggcggcgttctcgagccgaggccccaactaccgcgcaccggag 180
||||| ||||| || || ||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 33004793 ccgtccgcgccgcgcgtcgcggcgttctcgagccggggccccaactaccgcgcgccggag 33004734
Query: 181 atcctcaagcccgacgtcatcgccccgggcgtcaacatactcgcggcgtggaccggcgcc 240
||||||||||| |||||||| ||||| ||||||||||| |||||||||||||||||||
Sbjct: 33004733 atcctcaagccggacgtcattgcccccggcgtcaacatcctcgcggcgtggaccggcgag 33004674
Query: 241 gcctcccccaccgacctggacatcgactcgaggcgcgtggagttcaacatcatctccggc 300
| | ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 33004673 tctgcgcccaccgacctcgacatcgacccgaggcgcgtggagttcaacatcatctccggc 33004614
Query: 301 acgtccatgtcctgcccgcacgtgagcggcctcgccgcgctgctccgccaggcgcacccg 360
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct: 33004613 acgtccatgtcgtgcccgcacgtcagcggcctcgccgcgctgctccgccaggcgcaaccg 33004554
Query: 361 gagtggagccccgcggcgatcaagtcggcgctcatgaccacggcgtacaacctggacaac 420
|| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 33004553 gactggagcccggcggcgatcaagtcggcgctcatgaccacggcgtacaacgtggacaac 33004494
Query: 421 tccggggaaaccatcaaggacctcgcgacgggcgtggagtcgacgccgttcgtccgtggc 480
||| | | |||||||||||| || || || ||||||||||||||||||||||||
Sbjct: 33004493 tccagcgcggtcatcaaggacctggctaccgggaccgagtcgacgccgttcgtccgtggc 33004434
Query: 481 gccggtcacgtcgaccccaacgccgccctcgacccaaggctggtgtacgacgccgg 536
||||| ||||||||||||||| ||| |||||||| | || ||||||||||||||
Sbjct: 33004433 gccggccacgtcgaccccaaccgcgcgctcgaccctggcctcgtgtacgacgccgg 33004378
Score = 97.6 bits (49), Expect = 6e-018
Identities = 139/169 (82%)
Strand = Plus / Plus
Query: 175 ccggagatcctcaagcccgacgtcatcgccccgggcgtcaacatactcgcggcgtggacc 234
||||||||||||||||||||| | ||||||| ||||||| ||| ||||| |||||| ||
Sbjct: 33001290 ccggagatcctcaagcccgaccttgtcgcccccggcgtcagcatcctcgccgcgtggtcc 33001349
Query: 235 ggcgccgcctcccccaccgacctggacatcgactcgaggcgcgtggagttcaacatcatc 294
||| || ||| || ||||| || ||| ||||| |||||||||| ||||||||||| |
Sbjct: 33001350 ggcctcgtctcgccaaccgaactcgacgtcgacacgaggcgcgtcaagttcaacatcttg 33001409
Query: 295 tccggcacgtccatgtcctgcccgcacgtgagcggcctcgccgcgctgc 343
||||| || ||| | |||||||||||||||||| |||| |||||||
Sbjct: 33001410 tccggtacatccgccgcgtgcccgcacgtgagcggcgtcgctgcgctgc 33001458
Score = 87.7 bits (44), Expect = 6e-015
Identities = 62/68 (91%)
Strand = Plus / Minus
Query: 271 aggcgcgtggagttcaacatcatctccggcacgtccatgtcctgcccgcacgtgagcggc 330
|||||||| |||||||||||||||||||||||||||||| | |||| |||| ||||||||
Sbjct: 33027699 aggcgcgtcgagttcaacatcatctccggcacgtccatggcgtgcctgcacatgagcggc 33027640
Query: 331 ctcgccgc 338
|||||||
Sbjct: 33027639 atcgccgc 33027632
Score = 85.7 bits (43), Expect = 2e-014
Identities = 67/75 (89%)
Strand = Plus / Minus
Query: 261 catcgactcgaggcgcgtggagttcaacatcatctccggcacgtccatgtcctgcccgca 320
||||||| ||||||| || ||||||||||||||||| |||||||||||| | ||||| ||
Sbjct: 33064800 catcgacacgaggcgtgtcgagttcaacatcatctctggcacgtccatggcgtgccctca 33064741
Query: 321 cgtgagcggcctcgc 335
|||||||||| ||||
Sbjct: 33064740 cgtgagcggcatcgc 33064726
Score = 58.0 bits (29), Expect = 5e-006
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 364 tggagccccgcggcgatcaagtcggcgctcatgaccacggcgtacaacctggacaac 420
|||||||| ||||||||||||||||| || ||||| || || |||||| ||||||||
Sbjct: 33054036 tggagcccggcggcgatcaagtcggccctgatgacgacagcctacaacgtggacaac 33053980
Score = 54.0 bits (27), Expect = 8e-005
Identities = 87/107 (81%)
Strand = Plus / Minus
Query: 295 tccggcacgtccatgtcctgcccgcacgtgagcggcctcgccgcgctgctccgccaggcg 354
||||| ||||||||||| ||||||||||| |||| ||| || ||||||||| | |
Sbjct: 5530858 tccgggacgtccatgtcgtgcccgcacgtcgccggcgtcgtcggcctgctccgcacgctg 5530799
Query: 355 cacccggagtggagccccgcggcgatcaagtcggcgctcatgaccac 401
| ||| || |||||||||||||||||| || ||||||||||||||
Sbjct: 5530798 cgccccgactggagccccgcggcgatccgctccgcgctcatgaccac 5530752
Score = 46.1 bits (23), Expect = 0.020
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 178 gagatcctcaagcccgacgtcatcgccccgggcgtcaacatactcgcggcgtggaccgg 236
|||||||||||||||||| | || ||||| || ||| |||| ||||| || ||||||||
Sbjct: 33027795 gagatcctcaagcccgacatgattgcccccggtgtcgacatcctcgctgcatggaccgg 33027737
>dbj|AK106527.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-107-F01, full
insert sequence
Length = 2648
Score = 603 bits (304), Expect = e-170
Identities = 478/536 (89%)
Strand = Plus / Plus
Query: 1 cacctcgtgccggcgactatggtcgggcagaagttcggcgacaagatcaggtactacgtc 60
|||||||| |||||||| ||||| |||||||| |||||||||||||||| ||||||||||
Sbjct: 1330 cacctcgtcccggcgacaatggtggggcagaaattcggcgacaagatcaagtactacgtc 1389
Query: 61 cagacggacccgtcgccaacggcgaccatcgtgttccgcggcacagtcatcggcaagtcg 120
|||| || |||||||| | |||||||||||||||||| ||||| |||||||| ||||||
Sbjct: 1390 cagagcgatccgtcgccgatggcgaccatcgtgttccggggcacggtcatcgggaagtcg 1449
Query: 121 ccgtcggcgcctcgagtggcggcgttctcgagccgaggccccaactaccgcgcaccggag 180
||||| ||||| || || ||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 1450 ccgtccgcgccgcgcgtcgcggcgttctcgagccggggccccaactaccgcgcgccggag 1509
Query: 181 atcctcaagcccgacgtcatcgccccgggcgtcaacatactcgcggcgtggaccggcgcc 240
||||||||||| |||||||| ||||| ||||||||||| |||||||||||||||||||
Sbjct: 1510 atcctcaagccggacgtcattgcccccggcgtcaacatcctcgcggcgtggaccggcgag 1569
Query: 241 gcctcccccaccgacctggacatcgactcgaggcgcgtggagttcaacatcatctccggc 300
| | ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1570 tctgcgcccaccgacctcgacatcgacccgaggcgcgtggagttcaacatcatctccggc 1629
Query: 301 acgtccatgtcctgcccgcacgtgagcggcctcgccgcgctgctccgccaggcgcacccg 360
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct: 1630 acgtccatgtcgtgcccgcacgtcagcggcctcgccgcgctgctccgccaggcgcaaccg 1689
Query: 361 gagtggagccccgcggcgatcaagtcggcgctcatgaccacggcgtacaacctggacaac 420
|| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1690 gactggagcccggcggcgatcaagtcggcgctcatgaccacggcgtacaacgtggacaac 1749
Query: 421 tccggggaaaccatcaaggacctcgcgacgggcgtggagtcgacgccgttcgtccgtggc 480
||| | | |||||||||||| || || || ||||||||||||||||||||||||
Sbjct: 1750 tccagcgcggtcatcaaggacctggctaccgggaccgagtcgacgccgttcgtccgtggc 1809
Query: 481 gccggtcacgtcgaccccaacgccgccctcgacccaaggctggtgtacgacgccgg 536
||||| ||||||||||||||| ||| |||||||| | || ||||||||||||||
Sbjct: 1810 gccggccacgtcgaccccaaccgcgcgctcgaccctggcctcgtgtacgacgccgg 1865
>gb|CA756295.1|CA756295 BR030039000_PLATE_F05_38_045.ab1 OA Oryza sativa (japonica
cultivar-group) cDNA clone
BR030039000_PLATE_F05_38_045.ab1 similar to NP_566473.1|
(NM_112261) subtilisin-like serine protease, putative
[Arabidopsis, mRNA sequence
Length = 619
Score = 599 bits (302), Expect = e-169
Identities = 477/536 (88%)
Strand = Plus / Plus
Query: 1 cacctcgtgccggcgactatggtcgggcagaagttcggcgacaagatcaggtactacgtc 60
|||||||| |||||||| ||||| |||||||| |||||||||||||||| ||||||||||
Sbjct: 26 cacctcgtcccggcgacaatggtggggcagaaattcggcgacaagatcaagtactacgtc 85
Query: 61 cagacggacccgtcgccaacggcgaccatcgtgttccgcggcacagtcatcggcaagtcg 120
|||| || |||||||| |||||||||||||||||||| ||||| |||||||| ||||||
Sbjct: 86 cagagcgatccgtcgccgacggcgaccatcgtgttccggggcacggtcatcgggaagtcg 145
Query: 121 ccgtcggcgcctcgagtggcggcgttctcgagccgaggccccaactaccgcgcaccggag 180
||||| ||||| || || ||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 146 ccgtccgcgccgcgcgtcgcggcgttctcgagccggggccccaactaccgcgcgccggag 205
Query: 181 atcctcaagcccgacgtcatcgccccgggcgtcaacatactcgcggcgtggaccggcgcc 240
||||||||||| |||||||| ||||| ||||||||||| |||||||||||||||||||
Sbjct: 206 atcctcaagccggacgtcattgcccccggcgtcaacatcctcgcggcgtggaccggcgag 265
Query: 241 gcctcccccaccgacctggacatcgactcgaggcgcgtggagttcaacatcatctccggc 300
| | ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 266 tctgcgcccaccgacctcgacatcgacccgaggcgcgtggagttcaacatcatctccggc 325
Query: 301 acgtccatgtcctgcccgcacgtgagcggcctcgccgcgctgctccgccaggcgcacccg 360
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct: 326 acgtccatgtcgtgcccgcacgtcagcggcctcgccgcgctgctccgccaggcgcaaccg 385
Query: 361 gagtggagccccgcggcgatcaagtcggcgctcatgaccacggcgtacaacctggacaac 420
|| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 386 gactggagcccggcggcgatcaagtcggcgctcatgaccacggcgtacaacgtggacnac 445
Query: 421 tccggggaaaccatcaaggacctcgcgacgggcgtggagtcgacgccgttcgtccgtggc 480
||| | | |||||||||||| || || || ||||||||||||||||||||||||
Sbjct: 446 tccagcgcggtcatcaaggacctggctaccgggaccgagtcgacgccgttcgtccgtggc 505
Query: 481 gccggtcacgtcgaccccaacgccgccctcgacccaaggctggtgtacgacgccgg 536
||||| |||||||||||| || ||| |||||||| | || ||||||||||||||
Sbjct: 506 gccggccacgtcgacccccaccgcgcgctcgaccctggnctcgtgtacgacgccgg 561
>gb|CB642755.1|CB642755 OSJNEb03B18.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb03B18 5', mRNA sequence
Length = 849
Score = 587 bits (296), Expect = e-165
Identities = 476/536 (88%)
Strand = Plus / Plus
Query: 1 cacctcgtgccggcgactatggtcgggcagaagttcggcgacaagatcaggtactacgtc 60
|||||||| |||||||| ||||| |||||||| |||||||||||||||| ||||||||||
Sbjct: 254 cacctcgtcccggcgacaatggtggggcagaaattcggcgacaagatcaagtactacgtc 313
Query: 61 cagacggacccgtcgccaacggcgaccatcgtgttccgcggcacagtcatcggcaagtcg 120
|||| || |||||||| |||||||||||||||||||| ||||| |||||||| ||||||
Sbjct: 314 cagagcgatccgtcgccgacggcgaccatcgtgttccggggcacggtcatcgggaagtcg 373
Query: 121 ccgtcggcgcctcgagtggcggcgttctcgagccgaggccccaactaccgcgcaccggag 180
||||| ||||| || || ||||||||||||||||| |||||||||||| ||| ||||||
Sbjct: 374 ccgtccgcgccgcgcgtcgcggcgttctcgagccggggccccaactactccgcgccggag 433
Query: 181 atcctcaagcccgacgtcatcgccccgggcgtcaacatactcgcggcgtggaccggcgcc 240
||||||||||| |||||||| ||||| ||||||||||| |||||||||||||||||||
Sbjct: 434 atcctcaagccggacgtcattgcccccggcgtcaacatcctcgcggcgtggaccggcgag 493
Query: 241 gcctcccccaccgacctggacatcgactcgaggcgcgtggagttcaacatcatctccggc 300
| | ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 494 tctgcgcccaccgacctcgacatcgacccgaggcgcgtggagttcaacatcatctccggc 553
Query: 301 acgtccatgtcctgcccgcacgtgagcggcctcgccgcgctgctccgccaggcgcacccg 360
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct: 554 acgtccatgtcgtgcccgcacgtcagcggcctcgccgcgctgctccgccaggcgcaaccg 613
Query: 361 gagtggagccccgcggcgatcaagtcggcgctcatgaccacggcgtacaacctggacaac 420
|| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 614 gactggagcccggcggcgatcaagtcggcgctcatgaccacggcgtacaacgtggacaac 673
Query: 421 tccggggaaaccatcaaggacctcgcgacgggcgtggagtcgacgccgttcgtccgtggc 480
||| | | |||||||||||| || || || ||||||||||||||||||||||||
Sbjct: 674 tccagcgcggtcatcaaggacctggctaccgggaccgagtcgacgccgttcgtccgtggc 733
Query: 481 gccggtcacgtcgaccccaacgccgccctcgacccaaggctggtgtacgacgccgg 536
||||| |||||||||||| || ||| |||||||| | || ||||||||||||||
Sbjct: 734 gccggccacgtcgacccccaccgcgcgctcgaccctggcctcgtgtacgacgccgg 789
>dbj|AK105749.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-B09, full
insert sequence
Length = 2517
Score = 133 bits (67), Expect = 1e-028
Identities = 106/119 (89%)
Strand = Plus / Plus
Query: 283 ttcaacatcatctccggcacgtccatgtcctgcccgcacgtgagcggcctcgccgcgctg 342
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1631 ttcaacatcatctccggcacgtccatgtcgtgcccgcacgtgagcggcctcgccgcgctg 1690
Query: 343 ctccgccaggcgcacccggagtggagccccgcggcgatcaagtcggcgctcatgaccac 401
|| | ||||||||||||||||||||||| || | ||||||||||||||||||
Sbjct: 1691 ctgaggagcgcgcacccggagtggagccccgccgccgtgcggtcggcgctcatgaccac 1749
Score = 69.9 bits (35), Expect = 1e-009
Identities = 56/63 (88%)
Strand = Plus / Plus
Query: 175 ccggagatcctcaagcccgacgtcatcgccccgggcgtcaacatactcgcggcgtggacc 234
||||||||||| ||||| ||| ||||||| ||||| || ||||| |||||||||||||||
Sbjct: 1523 ccggagatcctgaagccggacatcatcgcgccgggggtgaacatcctcgcggcgtggacc 1582
Query: 235 ggc 237
|||
Sbjct: 1583 ggc 1585
>gb|AC109601.9| Oryza sativa chromosome 3 BAC OSJNBa0004G03 genomic sequence, complete
sequence
Length = 145590
Score = 133 bits (67), Expect = 1e-028
Identities = 106/119 (89%)
Strand = Plus / Plus
Query: 283 ttcaacatcatctccggcacgtccatgtcctgcccgcacgtgagcggcctcgccgcgctg 342
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 107745 ttcaacatcatctccggcacgtccatgtcgtgcccgcacgtgagcggcctcgccgcgctg 107804
Query: 343 ctccgccaggcgcacccggagtggagccccgcggcgatcaagtcggcgctcatgaccac 401
|| | ||||||||||||||||||||||| || | ||||||||||||||||||
Sbjct: 107805 ctgaggagcgcgcacccggagtggagccccgccgccgtgcggtcggcgctcatgaccac 107863
Score = 69.9 bits (35), Expect = 1e-009
Identities = 56/63 (88%)
Strand = Plus / Plus
Query: 175 ccggagatcctcaagcccgacgtcatcgccccgggcgtcaacatactcgcggcgtggacc 234
||||||||||| ||||| ||| ||||||| ||||| || ||||| |||||||||||||||
Sbjct: 107637 ccggagatcctgaagccggacatcatcgcgccgggggtgaacatcctcgcggcgtggacc 107696
Query: 235 ggc 237
|||
Sbjct: 107697 ggc 107699
>gb|AACV01007281.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg007281, whole
genome shotgun sequence
Length = 18450
Score = 133 bits (67), Expect = 1e-028
Identities = 106/119 (89%)
Strand = Plus / Minus
Query: 283 ttcaacatcatctccggcacgtccatgtcctgcccgcacgtgagcggcctcgccgcgctg 342
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1244 ttcaacatcatctccggcacgtccatgtcgtgcccgcacgtgagcggcctcgccgcgctg 1185
Query: 343 ctccgccaggcgcacccggagtggagccccgcggcgatcaagtcggcgctcatgaccac 401
|| | ||||||||||||||||||||||| || | ||||||||||||||||||
Sbjct: 1184 ctgaggagcgcgcacccggagtggagccccgccgccgtgcggtcggcgctcatgaccac 1126
Score = 69.9 bits (35), Expect = 1e-009
Identities = 56/63 (88%)
Strand = Plus / Minus
Query: 175 ccggagatcctcaagcccgacgtcatcgccccgggcgtcaacatactcgcggcgtggacc 234
||||||||||| ||||| ||| ||||||| ||||| || ||||| |||||||||||||||
Sbjct: 1352 ccggagatcctgaagccggacatcatcgcgccgggggtgaacatcctcgcggcgtggacc 1293
Query: 235 ggc 237
|||
Sbjct: 1292 ggc 1290
>ref|NT_107174.1| Oryza sativa (japonica cultivar-group)
Length = 4376475
Score = 133 bits (67), Expect = 1e-028
Identities = 106/119 (89%)
Strand = Plus / Plus
Query: 283 ttcaacatcatctccggcacgtccatgtcctgcccgcacgtgagcggcctcgccgcgctg 342
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 3100602 ttcaacatcatctccggcacgtccatgtcgtgcccgcacgtgagcggcctcgccgcgctg 3100661
Query: 343 ctccgccaggcgcacccggagtggagccccgcggcgatcaagtcggcgctcatgaccac 401
|| | ||||||||||||||||||||||| || | ||||||||||||||||||
Sbjct: 3100662 ctgaggagcgcgcacccggagtggagccccgccgccgtgcggtcggcgctcatgaccac 3100720
Score = 69.9 bits (35), Expect = 1e-009
Identities = 56/63 (88%)
Strand = Plus / Plus
Query: 175 ccggagatcctcaagcccgacgtcatcgccccgggcgtcaacatactcgcggcgtggacc 234
||||||||||| ||||| ||| ||||||| ||||| || ||||| |||||||||||||||
Sbjct: 3100494 ccggagatcctgaagccggacatcatcgcgccgggggtgaacatcctcgcggcgtggacc 3100553
Query: 235 ggc 237
|||
Sbjct: 3100554 ggc 3100556
>gb|AC133860.5| Oryza sativa chromosome 3 BAC OSJNBa0091E13 genomic sequence, complete
sequence
Length = 157397
Score = 133 bits (67), Expect = 1e-028
Identities = 106/119 (89%)
Strand = Plus / Minus
Query: 283 ttcaacatcatctccggcacgtccatgtcctgcccgcacgtgagcggcctcgccgcgctg 342
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 155648 ttcaacatcatctccggcacgtccatgtcgtgcccgcacgtgagcggcctcgccgcgctg 155589
Query: 343 ctccgccaggcgcacccggagtggagccccgcggcgatcaagtcggcgctcatgaccac 401
|| | ||||||||||||||||||||||| || | ||||||||||||||||||
Sbjct: 155588 ctgaggagcgcgcacccggagtggagccccgccgccgtgcggtcggcgctcatgaccac 155530
Score = 69.9 bits (35), Expect = 1e-009
Identities = 56/63 (88%)
Strand = Plus / Minus
Query: 175 ccggagatcctcaagcccgacgtcatcgccccgggcgtcaacatactcgcggcgtggacc 234
||||||||||| ||||| ||| ||||||| ||||| || ||||| |||||||||||||||
Sbjct: 155756 ccggagatcctgaagccggacatcatcgcgccgggggtgaacatcctcgcggcgtggacc 155697
Query: 235 ggc 237
|||
Sbjct: 155696 ggc 155694
>gb|CH401174.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000011 genomic
scaffold, whole genome shotgun sequence
Length = 12704415
Score = 133 bits (67), Expect = 1e-028
Identities = 106/119 (89%)
Strand = Plus / Plus
Query: 283 ttcaacatcatctccggcacgtccatgtcctgcccgcacgtgagcggcctcgccgcgctg 342
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 9101249 ttcaacatcatctccggcacgtccatgtcgtgcccgcacgtgagcggcctcgccgcgctg 9101308
Query: 343 ctccgccaggcgcacccggagtggagccccgcggcgatcaagtcggcgctcatgaccac 401
|| | ||||||||||||||||||||||| || | ||||||||||||||||||
Sbjct: 9101309 ctgaggagcgcgcacccggagtggagccccgccgccgtgcggtcggcgctcatgaccac 9101367
Score = 69.9 bits (35), Expect = 1e-009
Identities = 56/63 (88%)
Strand = Plus / Plus
Query: 175 ccggagatcctcaagcccgacgtcatcgccccgggcgtcaacatactcgcggcgtggacc 234
||||||||||| ||||| ||| ||||||| ||||| || ||||| |||||||||||||||
Sbjct: 9101141 ccggagatcctgaagccggacatcatcgcgccgggggtgaacatcctcgcggcgtggacc 9101200
Query: 235 ggc 237
|||
Sbjct: 9101201 ggc 9101203
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 133 bits (67), Expect = 1e-028
Identities = 106/119 (89%)
Strand = Plus / Plus
Query: 283 ttcaacatcatctccggcacgtccatgtcctgcccgcacgtgagcggcctcgccgcgctg 342
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 23151956 ttcaacatcatctccggcacgtccatgtcgtgcccgcacgtgagcggcctcgccgcgctg 23152015
Query: 343 ctccgccaggcgcacccggagtggagccccgcggcgatcaagtcggcgctcatgaccac 401
|| | ||||||||||||||||||||||| || | ||||||||||||||||||
Sbjct: 23152016 ctgaggagcgcgcacccggagtggagccccgccgccgtgcggtcggcgctcatgaccac 23152074
Score = 121 bits (61), Expect = 4e-025
Identities = 112/129 (86%)
Strand = Plus / Minus
Query: 283 ttcaacatcatctccggcacgtccatgtcctgcccgcacgtgagcggcctcgccgcgctg 342
||||||||||||||||| ||||||||||| ||||||||||||||||| || || || ||
Sbjct: 32095632 ttcaacatcatctccgggacgtccatgtcgtgcccgcacgtgagcgggctggcggctttg 32095573
Query: 343 ctccgccaggcgcacccggagtggagccccgcggcgatcaagtcggcgctcatgaccacg 402
|||||| |||||||| ||| |||||||| ||||||||| |||||||| |||||||||
Sbjct: 32095572 ctccgcgcggcgcaccaggactggagcccggcggcgatccgctcggcgctgatgaccacg 32095513
Query: 403 gcgtacaac 411
||||||||
Sbjct: 32095512 tcgtacaac 32095504
Score = 69.9 bits (35), Expect = 1e-009
Identities = 56/63 (88%)
Strand = Plus / Plus
Query: 175 ccggagatcctcaagcccgacgtcatcgccccgggcgtcaacatactcgcggcgtggacc 234
||||||||||| ||||| ||| ||||||| ||||| || ||||| |||||||||||||||
Sbjct: 23151848 ccggagatcctgaagccggacatcatcgcgccgggggtgaacatcctcgcggcgtggacc 23151907
Query: 235 ggc 237
|||
Sbjct: 23151908 ggc 23151910
Score = 67.9 bits (34), Expect = 5e-009
Identities = 58/66 (87%)
Strand = Plus / Minus
Query: 175 ccggagatcctcaagcccgacgtcatcgccccgggcgtcaacatactcgcggcgtggacc 234
||||| ||||| ||||| ||| |||| ||||||||||||||||| |||||||| |||||
Sbjct: 7745503 ccggaaatccttaagccggacttcattgccccgggcgtcaacatcctcgcggcatggacg 7745444
Query: 235 ggcgcc 240
||||||
Sbjct: 7745443 ggcgcc 7745438
Score = 56.0 bits (28), Expect = 2e-005
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 181 atcctcaagcccgacgtcatcgccccgggcgtcaacatactcgcggcgtggaccgg 236
||||||||||| ||| | ||||| || ||||||||||| |||||||||||| ||||
Sbjct: 32095734 atcctcaagccggacctgatcgcgcccggcgtcaacatcctcgcggcgtggtccgg 32095679
Score = 50.1 bits (25), Expect = 0.001
Identities = 58/69 (84%)
Strand = Plus / Minus
Query: 279 ggagttcaacatcatctccggcacgtccatgtcctgcccgcacgtgagcggcctcgccgc 338
||||||||||||| | || ||||| || ||| | |||||||||| ||||||| ||| ||
Sbjct: 7745399 ggagttcaacatcctgtcgggcacctcgatggcgtgcccgcacgcgagcggcgccgcggc 7745340
Query: 339 gctgctccg 347
|||||||||
Sbjct: 7745339 gctgctccg 7745331
Score = 48.1 bits (24), Expect = 0.005
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 295 tccggcacgtccatgtcctgcccgcacgtgagcggcctcgccgc 338
||||||||||| |||||| ||||||| |||||||| |||||||
Sbjct: 1204974 tccggcacgtcgatgtccaccccgcacctgagcggcatcgccgc 1204931
Score = 46.1 bits (23), Expect = 0.020
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 379 atcaagtcggcgctcatgaccacggcgtaca 409
|||||||||||||| ||||||||||| ||||
Sbjct: 3294024 atcaagtcggcgctgatgaccacggcataca 3293994
Score = 44.1 bits (22), Expect = 0.077
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 298 ggcacgtccatgtcctgcccgcacgt 323
|||||||||||||| |||||||||||
Sbjct: 3294105 ggcacgtccatgtcgtgcccgcacgt 3294080
Score = 44.1 bits (22), Expect = 0.077
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 184 ctcaagcccgacgtcatcgccccgggcgtcaacatactcgcggcgtggaccggc 237
|||||||||||||| ||||||| ||||| ||||| |||| |||||| |||||
Sbjct: 2555532 ctcaagcccgacgtggtcgcccccggcgtgaacatcatcgccgcgtggcccggc 2555585
Score = 44.1 bits (22), Expect = 0.077
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 373 gcggcgatcaagtcggcgctcatgac 398
|||||||||||||||||| |||||||
Sbjct: 1204896 gcggcgatcaagtcggcgatcatgac 1204871
Score = 42.1 bits (21), Expect = 0.31
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 313 tgcccgcacgtgagcggcctcgccgcgct 341
|||||||||||||||||| |||| |||||
Sbjct: 2555661 tgcccgcacgtgagcggcatcgcggcgct 2555689
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 133 bits (67), Expect = 1e-028
Identities = 106/119 (89%)
Strand = Plus / Plus
Query: 283 ttcaacatcatctccggcacgtccatgtcctgcccgcacgtgagcggcctcgccgcgctg 342
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 22505527 ttcaacatcatctccggcacgtccatgtcgtgcccgcacgtgagcggcctcgccgcgctg 22505586
Query: 343 ctccgccaggcgcacccggagtggagccccgcggcgatcaagtcggcgctcatgaccac 401
|| | ||||||||||||||||||||||| || | ||||||||||||||||||
Sbjct: 22505587 ctgaggagcgcgcacccggagtggagccccgccgccgtgcggtcggcgctcatgaccac 22505645
Score = 129 bits (65), Expect = 2e-027
Identities = 113/129 (87%)
Strand = Plus / Minus
Query: 283 ttcaacatcatctccggcacgtccatgtcctgcccgcacgtgagcggcctcgccgcgctg 342
||||||||||||||||| ||||||||||| ||||||||||||||||| || || ||| ||
Sbjct: 31275579 ttcaacatcatctccgggacgtccatgtcgtgcccgcacgtgagcgggctggcggcgttg 31275520
Query: 343 ctccgccaggcgcacccggagtggagccccgcggcgatcaagtcggcgctcatgaccacg 402
|||||| |||||||| ||| |||||||| ||||||||| |||||||| |||||||||
Sbjct: 31275519 ctccgcgcggcgcaccaggactggagcccggcggcgatccgctcggcgctgatgaccacg 31275460
Query: 403 gcgtacaac 411
||||||||
Sbjct: 31275459 tcgtacaac 31275451
Score = 69.9 bits (35), Expect = 1e-009
Identities = 56/63 (88%)
Strand = Plus / Plus
Query: 175 ccggagatcctcaagcccgacgtcatcgccccgggcgtcaacatactcgcggcgtggacc 234
||||||||||| ||||| ||| ||||||| ||||| || ||||| |||||||||||||||
Sbjct: 22505419 ccggagatcctgaagccggacatcatcgcgccgggggtgaacatcctcgcggcgtggacc 22505478
Query: 235 ggc 237
|||
Sbjct: 22505479 ggc 22505481
Score = 67.9 bits (34), Expect = 5e-009
Identities = 58/66 (87%)
Strand = Plus / Minus
Query: 175 ccggagatcctcaagcccgacgtcatcgccccgggcgtcaacatactcgcggcgtggacc 234
||||| ||||| ||||| ||| |||| ||||||||||||||||| |||||||| |||||
Sbjct: 7527819 ccggaaatccttaagccggacttcattgccccgggcgtcaacatcctcgcggcatggacg 7527760
Query: 235 ggcgcc 240
||||||
Sbjct: 7527759 ggcgcc 7527754
Score = 56.0 bits (28), Expect = 2e-005
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 181 atcctcaagcccgacgtcatcgccccgggcgtcaacatactcgcggcgtggaccgg 236
||||||||||| ||| | ||||| || ||||||||||| |||||||||||| ||||
Sbjct: 31275681 atcctcaagccggacctgatcgcgcccggcgtcaacatcctcgcggcgtggtccgg 31275626
Score = 50.1 bits (25), Expect = 0.001
Identities = 58/69 (84%)
Strand = Plus / Minus
Query: 279 ggagttcaacatcatctccggcacgtccatgtcctgcccgcacgtgagcggcctcgccgc 338
||||||||||||| | || ||||| || ||| | |||||||||| ||||||| ||| ||
Sbjct: 7527715 ggagttcaacatcctgtcgggcacctcgatggcgtgcccgcacgcgagcggcgccgcggc 7527656
Query: 339 gctgctccg 347
|||||||||
Sbjct: 7527655 gctgctccg 7527647
Score = 48.1 bits (24), Expect = 0.005
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 295 tccggcacgtccatgtcctgcccgcacgtgagcggcctcgccgc 338
||||||||||| |||||| ||||||| |||||||| |||||||
Sbjct: 1014644 tccggcacgtcgatgtccaccccgcacctgagcggcatcgccgc 1014601
Score = 46.1 bits (23), Expect = 0.020
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 379 atcaagtcggcgctcatgaccacggcgtaca 409
|||||||||||||| ||||||||||| ||||
Sbjct: 3134251 atcaagtcggcgctgatgaccacggcataca 3134221
Score = 44.1 bits (22), Expect = 0.077
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 298 ggcacgtccatgtcctgcccgcacgt 323
|||||||||||||| |||||||||||
Sbjct: 3134332 ggcacgtccatgtcgtgcccgcacgt 3134307
Score = 44.1 bits (22), Expect = 0.077
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 184 ctcaagcccgacgtcatcgccccgggcgtcaacatactcgcggcgtggaccggc 237
|||||||||||||| ||||||| ||||| ||||| |||| |||||| |||||
Sbjct: 2371170 ctcaagcccgacgtggtcgcccccggcgtgaacatcatcgccgcgtggcccggc 2371223
Score = 44.1 bits (22), Expect = 0.077
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 373 gcggcgatcaagtcggcgctcatgac 398
|||||||||||||||||| |||||||
Sbjct: 1014566 gcggcgatcaagtcggcgatcatgac 1014541
Score = 42.1 bits (21), Expect = 0.31
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 313 tgcccgcacgtgagcggcctcgccgcgct 341
|||||||||||||||||| |||| |||||
Sbjct: 2371299 tgcccgcacgtgagcggcatcgcggcgct 2371327
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 133 bits (67), Expect = 1e-028
Identities = 106/119 (89%)
Strand = Plus / Plus
Query: 283 ttcaacatcatctccggcacgtccatgtcctgcccgcacgtgagcggcctcgccgcgctg 342
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 22512498 ttcaacatcatctccggcacgtccatgtcgtgcccgcacgtgagcggcctcgccgcgctg 22512557
Query: 343 ctccgccaggcgcacccggagtggagccccgcggcgatcaagtcggcgctcatgaccac 401
|| | ||||||||||||||||||||||| || | ||||||||||||||||||
Sbjct: 22512558 ctgaggagcgcgcacccggagtggagccccgccgccgtgcggtcggcgctcatgaccac 22512616
Score = 129 bits (65), Expect = 2e-027
Identities = 113/129 (87%)
Strand = Plus / Minus
Query: 283 ttcaacatcatctccggcacgtccatgtcctgcccgcacgtgagcggcctcgccgcgctg 342
||||||||||||||||| ||||||||||| ||||||||||||||||| || || ||| ||
Sbjct: 31185056 ttcaacatcatctccgggacgtccatgtcgtgcccgcacgtgagcgggctggcggcgttg 31184997
Query: 343 ctccgccaggcgcacccggagtggagccccgcggcgatcaagtcggcgctcatgaccacg 402
|||||| |||||||| ||| |||||||| ||||||||| |||||||| |||||||||
Sbjct: 31184996 ctccgcgcggcgcaccaggactggagcccggcggcgatccgctcggcgctgatgaccacg 31184937
Query: 403 gcgtacaac 411
||||||||
Sbjct: 31184936 tcgtacaac 31184928
Score = 69.9 bits (35), Expect = 1e-009
Identities = 56/63 (88%)
Strand = Plus / Plus
Query: 175 ccggagatcctcaagcccgacgtcatcgccccgggcgtcaacatactcgcggcgtggacc 234
||||||||||| ||||| ||| ||||||| ||||| || ||||| |||||||||||||||
Sbjct: 22512390 ccggagatcctgaagccggacatcatcgcgccgggggtgaacatcctcgcggcgtggacc 22512449
Query: 235 ggc 237
|||
Sbjct: 22512450 ggc 22512452
Score = 67.9 bits (34), Expect = 5e-009
Identities = 58/66 (87%)
Strand = Plus / Minus
Query: 175 ccggagatcctcaagcccgacgtcatcgccccgggcgtcaacatactcgcggcgtggacc 234
||||| ||||| ||||| ||| |||| ||||||||||||||||| |||||||| |||||
Sbjct: 7529984 ccggaaatccttaagccggacttcattgccccgggcgtcaacatcctcgcggcatggacg 7529925
Query: 235 ggcgcc 240
||||||
Sbjct: 7529924 ggcgcc 7529919
Score = 56.0 bits (28), Expect = 2e-005
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 181 atcctcaagcccgacgtcatcgccccgggcgtcaacatactcgcggcgtggaccgg 236
||||||||||| ||| | ||||| || ||||||||||| |||||||||||| ||||
Sbjct: 31185158 atcctcaagccggacctgatcgcgcccggcgtcaacatcctcgcggcgtggtccgg 31185103
Score = 50.1 bits (25), Expect = 0.001
Identities = 58/69 (84%)
Strand = Plus / Minus
Query: 279 ggagttcaacatcatctccggcacgtccatgtcctgcccgcacgtgagcggcctcgccgc 338
||||||||||||| | || ||||| || ||| | |||||||||| ||||||| ||| ||
Sbjct: 7529880 ggagttcaacatcctgtcgggcacctcgatggcgtgcccgcacgcgagcggcgccgcggc 7529821
Query: 339 gctgctccg 347
|||||||||
Sbjct: 7529820 gctgctccg 7529812
Score = 48.1 bits (24), Expect = 0.005
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 295 tccggcacgtccatgtcctgcccgcacgtgagcggcctcgccgc 338
||||||||||| |||||| ||||||| |||||||| |||||||
Sbjct: 1014646 tccggcacgtcgatgtccaccccgcacctgagcggcatcgccgc 1014603
Score = 46.1 bits (23), Expect = 0.020
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 379 atcaagtcggcgctcatgaccacggcgtaca 409
|||||||||||||| ||||||||||| ||||
Sbjct: 3134140 atcaagtcggcgctgatgaccacggcataca 3134110
Score = 44.1 bits (22), Expect = 0.077
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 298 ggcacgtccatgtcctgcccgcacgt 323
|||||||||||||| |||||||||||
Sbjct: 3134221 ggcacgtccatgtcgtgcccgcacgt 3134196
Score = 44.1 bits (22), Expect = 0.077
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 184 ctcaagcccgacgtcatcgccccgggcgtcaacatactcgcggcgtggaccggc 237
|||||||||||||| ||||||| ||||| ||||| |||| |||||| |||||
Sbjct: 2371060 ctcaagcccgacgtggtcgcccccggcgtgaacatcatcgccgcgtggcccggc 2371113
Score = 44.1 bits (22), Expect = 0.077
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 373 gcggcgatcaagtcggcgctcatgac 398
|||||||||||||||||| |||||||
Sbjct: 1014568 gcggcgatcaagtcggcgatcatgac 1014543
Score = 42.1 bits (21), Expect = 0.31
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 313 tgcccgcacgtgagcggcctcgccgcgct 341
|||||||||||||||||| |||| |||||
Sbjct: 2371189 tgcccgcacgtgagcggcatcgcggcgct 2371217
>dbj|AK101646.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033055P14, full
insert sequence
Length = 2667
Score = 129 bits (65), Expect = 2e-027
Identities = 113/129 (87%)
Strand = Plus / Plus
Query: 283 ttcaacatcatctccggcacgtccatgtcctgcccgcacgtgagcggcctcgccgcgctg 342
||||||||||||||||| ||||||||||| ||||||||||||||||| || || ||| ||
Sbjct: 1668 ttcaacatcatctccgggacgtccatgtcgtgcccgcacgtgagcgggctggcggcgttg 1727
Query: 343 ctccgccaggcgcacccggagtggagccccgcggcgatcaagtcggcgctcatgaccacg 402
|||||| |||||||| ||| |||||||| ||||||||| |||||||| |||||||||
Sbjct: 1728 ctccgcgcggcgcaccaggactggagcccggcggcgatccgctcggcgctgatgaccacg 1787
Query: 403 gcgtacaac 411
||||||||
Sbjct: 1788 tcgtacaac 1796
Score = 56.0 bits (28), Expect = 2e-005
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 181 atcctcaagcccgacgtcatcgccccgggcgtcaacatactcgcggcgtggaccgg 236
||||||||||| ||| | ||||| || ||||||||||| |||||||||||| ||||
Sbjct: 1566 atcctcaagccggacctgatcgcgcccggcgtcaacatcctcgcggcgtggtccgg 1621
>dbj|AK103255.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033123P12, full
insert sequence
Length = 2813
Score = 129 bits (65), Expect = 2e-027
Identities = 113/129 (87%)
Strand = Plus / Plus
Query: 283 ttcaacatcatctccggcacgtccatgtcctgcccgcacgtgagcggcctcgccgcgctg 342
||||||||||||||||| ||||||||||| ||||||||||||||||| || || ||| ||
Sbjct: 1863 ttcaacatcatctccgggacgtccatgtcgtgcccgcacgtgagcgggctggcggcgttg 1922
Query: 343 ctccgccaggcgcacccggagtggagccccgcggcgatcaagtcggcgctcatgaccacg 402
|||||| |||||||| ||| |||||||| ||||||||| |||||||| |||||||||
Sbjct: 1923 ctccgcgcggcgcaccaggactggagcccggcggcgatccgctcggcgctgatgaccacg 1982
Query: 403 gcgtacaac 411
||||||||
Sbjct: 1983 tcgtacaac 1991
Score = 56.0 bits (28), Expect = 2e-005
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 181 atcctcaagcccgacgtcatcgccccgggcgtcaacatactcgcggcgtggaccgg 236
||||||||||| ||| | ||||| || ||||||||||| |||||||||||| ||||
Sbjct: 1761 atcctcaagccggacctgatcgcgcccggcgtcaacatcctcgcggcgtggtccgg 1816
>gb|AC084282.6| Oryza sativa chromosome 3 BAC OSJNBb0048A17 genomic sequence, complete
sequence
Length = 128017
Score = 129 bits (65), Expect = 2e-027
Identities = 113/129 (87%)
Strand = Plus / Minus
Query: 283 ttcaacatcatctccggcacgtccatgtcctgcccgcacgtgagcggcctcgccgcgctg 342
||||||||||||||||| ||||||||||| ||||||||||||||||| || || ||| ||
Sbjct: 105697 ttcaacatcatctccgggacgtccatgtcgtgcccgcacgtgagcgggctggcggcgttg 105638
Query: 343 ctccgccaggcgcacccggagtggagccccgcggcgatcaagtcggcgctcatgaccacg 402
|||||| |||||||| ||| |||||||| ||||||||| |||||||| |||||||||
Sbjct: 105637 ctccgcgcggcgcaccaggactggagcccggcggcgatccgctcggcgctgatgaccacg 105578
Query: 403 gcgtacaac 411
||||||||
Sbjct: 105577 tcgtacaac 105569
Score = 56.0 bits (28), Expect = 2e-005
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 181 atcctcaagcccgacgtcatcgccccgggcgtcaacatactcgcggcgtggaccgg 236
||||||||||| ||| | ||||| || ||||||||||| |||||||||||| ||||
Sbjct: 105799 atcctcaagccggacctgatcgcgcccggcgtcaacatcctcgcggcgtggtccgg 105744
>ref|XM_469861.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2568
Score = 129 bits (65), Expect = 2e-027
Identities = 113/129 (87%)
Strand = Plus / Plus
Query: 283 ttcaacatcatctccggcacgtccatgtcctgcccgcacgtgagcggcctcgccgcgctg 342
||||||||||||||||| ||||||||||| ||||||||||||||||| || || ||| ||
Sbjct: 1615 ttcaacatcatctccgggacgtccatgtcgtgcccgcacgtgagcgggctggcggcgttg 1674
Query: 343 ctccgccaggcgcacccggagtggagccccgcggcgatcaagtcggcgctcatgaccacg 402
|||||| |||||||| ||| |||||||| ||||||||| |||||||| |||||||||
Sbjct: 1675 ctccgcgcggcgcaccaggactggagcccggcggcgatccgctcggcgctgatgaccacg 1734
Query: 403 gcgtacaac 411
||||||||
Sbjct: 1735 tcgtacaac 1743
Score = 56.0 bits (28), Expect = 2e-005
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 181 atcctcaagcccgacgtcatcgccccgggcgtcaacatactcgcggcgtggaccgg 236
||||||||||| ||| | ||||| || ||||||||||| |||||||||||| ||||
Sbjct: 1513 atcctcaagccggacctgatcgcgcccggcgtcaacatcctcgcggcgtggtccgg 1568
>ref|NT_107187.1| Oryza sativa (japonica cultivar-group)
Length = 2541880
Score = 129 bits (65), Expect = 2e-027
Identities = 113/129 (87%)
Strand = Plus / Minus
Query: 283 ttcaacatcatctccggcacgtccatgtcctgcccgcacgtgagcggcctcgccgcgctg 342
||||||||||||||||| ||||||||||| ||||||||||||||||| || || ||| ||
Sbjct: 364463 ttcaacatcatctccgggacgtccatgtcgtgcccgcacgtgagcgggctggcggcgttg 364404
Query: 343 ctccgccaggcgcacccggagtggagccccgcggcgatcaagtcggcgctcatgaccacg 402
|||||| |||||||| ||| |||||||| ||||||||| |||||||| |||||||||
Sbjct: 364403 ctccgcgcggcgcaccaggactggagcccggcggcgatccgctcggcgctgatgaccacg 364344
Query: 403 gcgtacaac 411
||||||||
Sbjct: 364343 tcgtacaac 364335
Score = 56.0 bits (28), Expect = 2e-005
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 181 atcctcaagcccgacgtcatcgccccgggcgtcaacatactcgcggcgtggaccgg 236
||||||||||| ||| | ||||| || ||||||||||| |||||||||||| ||||
Sbjct: 364565 atcctcaagccggacctgatcgcgcccggcgtcaacatcctcgcggcgtggtccgg 364510
>gb|AACV01007964.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg007964, whole
genome shotgun sequence
Length = 44900
Score = 121 bits (61), Expect = 4e-025
Identities = 112/129 (86%)
Strand = Plus / Minus
Query: 283 ttcaacatcatctccggcacgtccatgtcctgcccgcacgtgagcggcctcgccgcgctg 342
||||||||||||||||| ||||||||||| ||||||||||||||||| || || || ||
Sbjct: 17363 ttcaacatcatctccgggacgtccatgtcgtgcccgcacgtgagcgggctggcggctttg 17304
Query: 343 ctccgccaggcgcacccggagtggagccccgcggcgatcaagtcggcgctcatgaccacg 402
|||||| |||||||| ||| |||||||| ||||||||| |||||||| |||||||||
Sbjct: 17303 ctccgcgcggcgcaccaggactggagcccggcggcgatccgctcggcgctgatgaccacg 17244
Query: 403 gcgtacaac 411
||||||||
Sbjct: 17243 tcgtacaac 17235
Score = 56.0 bits (28), Expect = 2e-005
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 181 atcctcaagcccgacgtcatcgccccgggcgtcaacatactcgcggcgtggaccgg 236
||||||||||| ||| | ||||| || ||||||||||| |||||||||||| ||||
Sbjct: 17465 atcctcaagccggacctgatcgcgcccggcgtcaacatcctcgcggcgtggtccgg 17410
>gb|CH401176.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000013 genomic
scaffold, whole genome shotgun sequence
Length = 9810738
Score = 121 bits (61), Expect = 4e-025
Identities = 112/129 (86%)
Strand = Plus / Minus
Query: 283 ttcaacatcatctccggcacgtccatgtcctgcccgcacgtgagcggcctcgccgcgctg 342
||||||||||||||||| ||||||||||| ||||||||||||||||| || || || ||
Sbjct: 4829469 ttcaacatcatctccgggacgtccatgtcgtgcccgcacgtgagcgggctggcggctttg 4829410
Query: 343 ctccgccaggcgcacccggagtggagccccgcggcgatcaagtcggcgctcatgaccacg 402
|||||| |||||||| ||| |||||||| ||||||||| |||||||| |||||||||
Sbjct: 4829409 ctccgcgcggcgcaccaggactggagcccggcggcgatccgctcggcgctgatgaccacg 4829350
Query: 403 gcgtacaac 411
||||||||
Sbjct: 4829349 tcgtacaac 4829341
Score = 56.0 bits (28), Expect = 2e-005
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 181 atcctcaagcccgacgtcatcgccccgggcgtcaacatactcgcggcgtggaccgg 236
||||||||||| ||| | ||||| || ||||||||||| |||||||||||| ||||
Sbjct: 4829571 atcctcaagccggacctgatcgcgcccggcgtcaacatcctcgcggcgtggtccgg 4829516
>gb|CB642756.1|CB642756 OSJNEb03B18.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb03B18 3', mRNA sequence
Length = 831
Score = 95.6 bits (48), Expect = 2e-017
Identities = 72/80 (90%)
Strand = Plus / Minus
Query: 457 gagtcgacgccgttcgtccgtggcgccggtcacgtcgaccccaacgccgccctcgaccca 516
||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||
Sbjct: 798 gagtcgacgccgttcgtccgtggcgccggccacgtcgaccccaaccgcgcgctcgaccct 739
Query: 517 aggctggtgtacgacgccgg 536
| || ||||||||||||||
Sbjct: 738 ggcctcgtgtacgacgccgg 719
>gb|CB674476.1|CB674476 OSJNEe09I19.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe09I19 3', mRNA sequence
Length = 819
Score = 95.6 bits (48), Expect = 2e-017
Identities = 72/80 (90%)
Strand = Plus / Minus
Query: 457 gagtcgacgccgttcgtccgtggcgccggtcacgtcgaccccaacgccgccctcgaccca 516
||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||
Sbjct: 792 gagtcgacgccgttcgtccgtggcgccggccacgtcgaccccaaccgcgcgctcgaccct 733
Query: 517 aggctggtgtacgacgccgg 536
| || ||||||||||||||
Sbjct: 732 ggcctcgtgtacgacgccgg 713
>gb|AACV01005526.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005526, whole
genome shotgun sequence
Length = 5145
Score = 87.7 bits (44), Expect = 6e-015
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 271 aggcgcgtggagttcaacatcatctccggcacgtccatgtcctgcccgcacgtgagcggc 330
|||||||| |||||||||||||||||||||||||||||| | |||| |||| ||||||||
Sbjct: 2180 aggcgcgtcgagttcaacatcatctccggcacgtccatggcgtgcctgcacatgagcggc 2239
Query: 331 ctcgccgc 338
|||||||
Sbjct: 2240 atcgccgc 2247
Score = 46.1 bits (23), Expect = 0.020
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 178 gagatcctcaagcccgacgtcatcgccccgggcgtcaacatactcgcggcgtggaccgg 236
|||||||||||||||||| | || ||||| || ||| |||| ||||| || ||||||||
Sbjct: 2084 gagatcctcaagcccgacatgattgcccccggtgtcgacatcctcgctgcatggaccgg 2142
>ref|XM_468097.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2073
Score = 87.7 bits (44), Expect = 6e-015
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 271 aggcgcgtggagttcaacatcatctccggcacgtccatgtcctgcccgcacgtgagcggc 330
|||||||| |||||||||||||||||||||||||||||| | |||| |||| ||||||||
Sbjct: 1381 aggcgcgtcgagttcaacatcatctccggcacgtccatggcgtgcctgcacatgagcggc 1440
Query: 331 ctcgccgc 338
|||||||
Sbjct: 1441 atcgccgc 1448
Score = 46.1 bits (23), Expect = 0.020
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 178 gagatcctcaagcccgacgtcatcgccccgggcgtcaacatactcgcggcgtggaccgg 236
|||||||||||||||||| | || ||||| || ||| |||| ||||| || ||||||||
Sbjct: 1285 gagatcctcaagcccgacatgattgcccccggtgtcgacatcctcgctgcatggaccgg 1343
>dbj|AK070669.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023058P11, full
insert sequence
Length = 2624
Score = 85.7 bits (43), Expect = 2e-014
Identities = 67/75 (89%)
Strand = Plus / Plus
Query: 261 catcgactcgaggcgcgtggagttcaacatcatctccggcacgtccatgtcctgcccgca 320
||||||| ||||||| || ||||||||||||||||| |||||||||||| | ||||| ||
Sbjct: 1698 catcgacacgaggcgtgtcgagttcaacatcatctctggcacgtccatggcgtgccctca 1757
Query: 321 cgtgagcggcctcgc 335
|||||||||| ||||
Sbjct: 1758 cgtgagcggcatcgc 1772
>ref|XM_468102.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2624
Score = 85.7 bits (43), Expect = 2e-014
Identities = 67/75 (89%)
Strand = Plus / Plus
Query: 261 catcgactcgaggcgcgtggagttcaacatcatctccggcacgtccatgtcctgcccgca 320
||||||| ||||||| || ||||||||||||||||| |||||||||||| | ||||| ||
Sbjct: 1699 catcgacacgaggcgtgtcgagttcaacatcatctctggcacgtccatggcgtgccctca 1758
Query: 321 cgtgagcggcctcgc 335
|||||||||| ||||
Sbjct: 1759 cgtgagcggcatcgc 1773
>gb|CD670591.1|CD670591 OsMR006 5MT resistant rice mutant cDNA library Oryza sativa
(japonica cultivar-group) cDNA, mRNA sequence
Length = 462
Score = 77.8 bits (39), Expect = 6e-012
Identities = 45/47 (95%)
Strand = Plus / Plus
Query: 283 ttcaacatcatctccggcacgtccatgtcctgcccgcacgtgagcgg 329
||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 123 ttcaacatcatctccgggacgtccatgtcgtgcccgcacgtgagcgg 169
>dbj|AP003871.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
clone:OJ1117_F10
Length = 169948
Score = 69.9 bits (35), Expect = 1e-009
Identities = 98/119 (82%)
Strand = Plus / Plus
Query: 283 ttcaacatcatctccggcacgtccatgtcctgcccgcacgtgagcggcctcgccgcgctg 342
||||||||| |||| |||||||||||| | ||||||||| | |||||||||||| ||
Sbjct: 68540 ttcaacatcctctcgggcacgtccatggcttgcccgcacatctccggcctcgccgcattg 68599
Query: 343 ctccgccaggcgcacccggagtggagccccgcggcgatcaagtcggcgctcatgaccac 401
||| |||||| || ||||||||||||||||||||||| ||||||||||||||
Sbjct: 68600 ctcaaggcggcgcatcctacctggagccccgcggcgatcaagtcagcgctcatgaccac 68658
>gb|AACV01018612.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg018612, whole
genome shotgun sequence
Length = 14504
Score = 69.9 bits (35), Expect = 1e-009
Identities = 98/119 (82%)
Strand = Plus / Plus
Query: 283 ttcaacatcatctccggcacgtccatgtcctgcccgcacgtgagcggcctcgccgcgctg 342
||||||||| |||| |||||||||||| | ||||||||| | |||||||||||| ||
Sbjct: 5022 ttcaacatcctctcgggcacgtccatggcttgcccgcacatctccggcctcgccgcattg 5081
Query: 343 ctccgccaggcgcacccggagtggagccccgcggcgatcaagtcggcgctcatgaccac 401
||| |||||| || ||||||||||||||||||||||| ||||||||||||||
Sbjct: 5082 ctcaaggcggcgcatcctacctggagccccgcggcgatcaagtcagcgctcatgaccac 5140
>ref|XM_482712.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2391
Score = 69.9 bits (35), Expect = 1e-009
Identities = 98/119 (82%)
Strand = Plus / Plus
Query: 283 ttcaacatcatctccggcacgtccatgtcctgcccgcacgtgagcggcctcgccgcgctg 342
||||||||| |||| |||||||||||| | ||||||||| | |||||||||||| ||
Sbjct: 1675 ttcaacatcctctcgggcacgtccatggcttgcccgcacatctccggcctcgccgcattg 1734
Query: 343 ctccgccaggcgcacccggagtggagccccgcggcgatcaagtcggcgctcatgaccac 401
||| |||||| || ||||||||||||||||||||||| ||||||||||||||
Sbjct: 1735 ctcaaggcggcgcatcctacctggagccccgcggcgatcaagtcagcgctcatgaccac 1793
>ref|XM_482713.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1018
Score = 69.9 bits (35), Expect = 1e-009
Identities = 98/119 (82%)
Strand = Plus / Minus
Query: 283 ttcaacatcatctccggcacgtccatgtcctgcccgcacgtgagcggcctcgccgcgctg 342
||||||||| |||| |||||||||||| | ||||||||| | |||||||||||| ||
Sbjct: 1000 ttcaacatcctctcgggcacgtccatggcttgcccgcacatctccggcctcgccgcattg 941
Query: 343 ctccgccaggcgcacccggagtggagccccgcggcgatcaagtcggcgctcatgaccac 401
||| |||||| || ||||||||||||||||||||||| ||||||||||||||
Sbjct: 940 ctcaaggcggcgcatcctacctggagccccgcggcgatcaagtcagcgctcatgaccac 882
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 69.9 bits (35), Expect = 1e-009
Identities = 98/119 (82%)
Strand = Plus / Plus
Query: 283 ttcaacatcatctccggcacgtccatgtcctgcccgcacgtgagcggcctcgccgcgctg 342
||||||||| |||| |||||||||||| | ||||||||| | |||||||||||| ||
Sbjct: 21867490 ttcaacatcctctcgggcacgtccatggcttgcccgcacatctccggcctcgccgcattg 21867549
Query: 343 ctccgccaggcgcacccggagtggagccccgcggcgatcaagtcggcgctcatgaccac 401
||| |||||| || ||||||||||||||||||||||| ||||||||||||||
Sbjct: 21867550 ctcaaggcggcgcatcctacctggagccccgcggcgatcaagtcagcgctcatgaccac 21867608
Score = 46.1 bits (23), Expect = 0.020
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 351 ggcgcacccggagtggagccccgcggcgatcaagtcggcgctcatgaccacggcg 405
||||| |||||||||||||||||| ||||| || ||| ||||||||||||||
Sbjct: 14120522 ggcgcgcccggagtggagccccgccgcgatgcgctccgcgatcatgaccacggcg 14120576
>gb|CH401230.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000067 genomic
scaffold, whole genome shotgun sequence
Length = 19501165
Score = 69.9 bits (35), Expect = 1e-009
Identities = 98/119 (82%)
Strand = Plus / Plus
Query: 283 ttcaacatcatctccggcacgtccatgtcctgcccgcacgtgagcggcctcgccgcgctg 342
||||||||| |||| |||||||||||| | ||||||||| | |||||||||||| ||
Sbjct: 13381821 ttcaacatcctctcgggcacgtccatggcttgcccgcacatctccggcctcgccgcattg 13381880
Query: 343 ctccgccaggcgcacccggagtggagccccgcggcgatcaagtcggcgctcatgaccac 401
||| |||||| || ||||||||||||||||||||||| ||||||||||||||
Sbjct: 13381881 ctcaaggcggcgcatcctacctggagccccgcggcgatcaagtcagcgctcatgaccac 13381939
Score = 46.1 bits (23), Expect = 0.020
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 351 ggcgcacccggagtggagccccgcggcgatcaagtcggcgctcatgaccacggcg 405
||||| |||||||||||||||||| ||||| || ||| ||||||||||||||
Sbjct: 5751172 ggcgcgcccggagtggagccccgccgcgatgcgctccgcgatcatgaccacggcg 5751226
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 69.9 bits (35), Expect = 1e-009
Identities = 98/119 (82%)
Strand = Plus / Plus
Query: 283 ttcaacatcatctccggcacgtccatgtcctgcccgcacgtgagcggcctcgccgcgctg 342
||||||||| |||| |||||||||||| | ||||||||| | |||||||||||| ||
Sbjct: 20983827 ttcaacatcctctcgggcacgtccatggcttgcccgcacatctccggcctcgccgcattg 20983886
Query: 343 ctccgccaggcgcacccggagtggagccccgcggcgatcaagtcggcgctcatgaccac 401
||| |||||| || ||||||||||||||||||||||| ||||||||||||||
Sbjct: 20983887 ctcaaggcggcgcatcctacctggagccccgcggcgatcaagtcagcgctcatgaccac 20983945
Score = 46.1 bits (23), Expect = 0.020
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 351 ggcgcacccggagtggagccccgcggcgatcaagtcggcgctcatgaccacggcg 405
||||| |||||||||||||||||| ||||| || ||| ||||||||||||||
Sbjct: 13353178 ggcgcgcccggagtggagccccgccgcgatgcgctccgcgatcatgaccacggcg 13353232
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 69.9 bits (35), Expect = 1e-009
Identities = 98/119 (82%)
Strand = Plus / Plus
Query: 283 ttcaacatcatctccggcacgtccatgtcctgcccgcacgtgagcggcctcgccgcgctg 342
||||||||| |||| |||||||||||| | ||||||||| | |||||||||||| ||
Sbjct: 22105577 ttcaacatcctctcgggcacgtccatggcttgcccgcacatctccggcctcgccgcattg 22105636
Query: 343 ctccgccaggcgcacccggagtggagccccgcggcgatcaagtcggcgctcatgaccac 401
||| |||||| || ||||||||||||||||||||||| ||||||||||||||
Sbjct: 22105637 ctcaaggcggcgcatcctacctggagccccgcggcgatcaagtcagcgctcatgaccac 22105695
Score = 46.1 bits (23), Expect = 0.020
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 351 ggcgcacccggagtggagccccgcggcgatcaagtcggcgctcatgaccacggcg 405
||||| |||||||||||||||||| ||||| || ||| ||||||||||||||
Sbjct: 14358609 ggcgcgcccggagtggagccccgccgcgatgcgctccgcgatcatgaccacggcg 14358663
>dbj|AK100150.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023015F12, full
insert sequence
Length = 999
Score = 67.9 bits (34), Expect = 5e-009
Identities = 37/38 (97%)
Strand = Plus / Minus
Query: 364 tggagccccgcggcgatcaagtcggcgctcatgaccac 401
||||||||||||||||||||||| ||||||||||||||
Sbjct: 904 tggagccccgcggcgatcaagtcagcgctcatgaccac 867
>gb|AC134239.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
OSJNBb0042A11, complete sequence
Length = 113049
Score = 67.9 bits (34), Expect = 5e-009
Identities = 58/66 (87%)
Strand = Plus / Minus
Query: 175 ccggagatcctcaagcccgacgtcatcgccccgggcgtcaacatactcgcggcgtggacc 234
||||| ||||| ||||| ||| |||| ||||||||||||||||| |||||||| |||||
Sbjct: 58880 ccggaaatccttaagccggacttcattgccccgggcgtcaacatcctcgcggcatggacg 58821
Query: 235 ggcgcc 240
||||||
Sbjct: 58820 ggcgcc 58815
Score = 50.1 bits (25), Expect = 0.001
Identities = 58/69 (84%)
Strand = Plus / Minus
Query: 279 ggagttcaacatcatctccggcacgtccatgtcctgcccgcacgtgagcggcctcgccgc 338
||||||||||||| | || ||||| || ||| | |||||||||| ||||||| ||| ||
Sbjct: 58776 ggagttcaacatcctgtcgggcacctcgatggcgtgcccgcacgcgagcggcgccgcggc 58717
Query: 339 gctgctccg 347
|||||||||
Sbjct: 58716 gctgctccg 58708
>gb|AACV01006195.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006195, whole
genome shotgun sequence
Length = 24137
Score = 67.9 bits (34), Expect = 5e-009
Identities = 58/66 (87%)
Strand = Plus / Minus
Query: 175 ccggagatcctcaagcccgacgtcatcgccccgggcgtcaacatactcgcggcgtggacc 234
||||| ||||| ||||| ||| |||| ||||||||||||||||| |||||||| |||||
Sbjct: 6922 ccggaaatccttaagccggacttcattgccccgggcgtcaacatcctcgcggcatggacg 6863
Query: 235 ggcgcc 240
||||||
Sbjct: 6862 ggcgcc 6857
Score = 50.1 bits (25), Expect = 0.001
Identities = 58/69 (84%)
Strand = Plus / Minus
Query: 279 ggagttcaacatcatctccggcacgtccatgtcctgcccgcacgtgagcggcctcgccgc 338
||||||||||||| | || ||||| || ||| | |||||||||| ||||||| ||| ||
Sbjct: 6818 ggagttcaacatcctgtcgggcacctcgatggcgtgcccgcacgcgagcggcgccgcggc 6759
Query: 339 gctgctccg 347
|||||||||
Sbjct: 6758 gctgctccg 6750
>ref|NT_107190.1| Oryza sativa (japonica cultivar-group)
Length = 840383
Score = 67.9 bits (34), Expect = 5e-009
Identities = 58/66 (87%)
Strand = Plus / Minus
Query: 175 ccggagatcctcaagcccgacgtcatcgccccgggcgtcaacatactcgcggcgtggacc 234
||||| ||||| ||||| ||| |||| ||||||||||||||||| |||||||| |||||
Sbjct: 786214 ccggaaatccttaagccggacttcattgccccgggcgtcaacatcctcgcggcatggacg 786155
Query: 235 ggcgcc 240
||||||
Sbjct: 786154 ggcgcc 786149
Score = 50.1 bits (25), Expect = 0.001
Identities = 58/69 (84%)
Strand = Plus / Minus
Query: 279 ggagttcaacatcatctccggcacgtccatgtcctgcccgcacgtgagcggcctcgccgc 338
||||||||||||| | || ||||| || ||| | |||||||||| ||||||| ||| ||
Sbjct: 786110 ggagttcaacatcctgtcgggcacctcgatggcgtgcccgcacgcgagcggcgccgcggc 786051
Query: 339 gctgctccg 347
|||||||||
Sbjct: 786050 gctgctccg 786042
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
scaffold, whole genome shotgun sequence
Length = 13858245
Score = 67.9 bits (34), Expect = 5e-009
Identities = 58/66 (87%)
Strand = Plus / Minus
Query: 175 ccggagatcctcaagcccgacgtcatcgccccgggcgtcaacatactcgcggcgtggacc 234
||||| ||||| ||||| ||| |||| ||||||||||||||||| |||||||| |||||
Sbjct: 7553141 ccggaaatccttaagccggacttcattgccccgggcgtcaacatcctcgcggcatggacg 7553082
Query: 235 ggcgcc 240
||||||
Sbjct: 7553081 ggcgcc 7553076
Score = 50.1 bits (25), Expect = 0.001
Identities = 58/69 (84%)
Strand = Plus / Minus
Query: 279 ggagttcaacatcatctccggcacgtccatgtcctgcccgcacgtgagcggcctcgccgc 338
||||||||||||| | || ||||| || ||| | |||||||||| ||||||| ||| ||
Sbjct: 7553037 ggagttcaacatcctgtcgggcacctcgatggcgtgcccgcacgcgagcggcgccgcggc 7552978
Query: 339 gctgctccg 347
|||||||||
Sbjct: 7552977 gctgctccg 7552969
Score = 48.1 bits (24), Expect = 0.005
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 295 tccggcacgtccatgtcctgcccgcacgtgagcggcctcgccgc 338
||||||||||| |||||| ||||||| |||||||| |||||||
Sbjct: 1012612 tccggcacgtcgatgtccaccccgcacctgagcggcatcgccgc 1012569
Score = 46.1 bits (23), Expect = 0.020
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 379 atcaagtcggcgctcatgaccacggcgtaca 409
|||||||||||||| ||||||||||| ||||
Sbjct: 3101662 atcaagtcggcgctgatgaccacggcataca 3101632
Score = 44.1 bits (22), Expect = 0.077
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 298 ggcacgtccatgtcctgcccgcacgt 323
|||||||||||||| |||||||||||
Sbjct: 3101743 ggcacgtccatgtcgtgcccgcacgt 3101718
Score = 44.1 bits (22), Expect = 0.077
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 184 ctcaagcccgacgtcatcgccccgggcgtcaacatactcgcggcgtggaccggc 237
|||||||||||||| ||||||| ||||| ||||| |||| |||||| |||||
Sbjct: 2363170 ctcaagcccgacgtggtcgcccccggcgtgaacatcatcgccgcgtggcccggc 2363223
Score = 44.1 bits (22), Expect = 0.077
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 373 gcggcgatcaagtcggcgctcatgac 398
|||||||||||||||||| |||||||
Sbjct: 1012534 gcggcgatcaagtcggcgatcatgac 1012509
Score = 42.1 bits (21), Expect = 0.31
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 313 tgcccgcacgtgagcggcctcgccgcgct 341
|||||||||||||||||| |||| |||||
Sbjct: 2363299 tgcccgcacgtgagcggcatcgcggcgct 2363327
>gb|CB653552.1|CB653552 OSJNEc04L02.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc04L02 5', mRNA sequence
Length = 812
Score = 63.9 bits (32), Expect = 8e-008
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 283 ttcaacatcatctccggcacgtccatgtcctgcccgcacg 322
|||||| |||||||||||||||||||||| ||||||||||
Sbjct: 305 ttcaacgtcatctccggcacgtccatgtcgtgcccgcacg 344
Score = 42.1 bits (21), Expect = 0.31
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 354 gcacccggagtggagccccgc 374
|||||||||||||||||||||
Sbjct: 376 gcacccggagtggagccccgc 396
>dbj|AK067138.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013096L15, full
insert sequence
Length = 2549
Score = 63.9 bits (32), Expect = 8e-008
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 283 ttcaacatcatctccggcacgtccatgtcctgcccgcacg 322
|||||| |||||||||||||||||||||| ||||||||||
Sbjct: 1635 ttcaacgtcatctccggcacgtccatgtcgtgcccgcacg 1674
Score = 42.1 bits (21), Expect = 0.31
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 354 gcacccggagtggagccccgc 374
|||||||||||||||||||||
Sbjct: 1706 gcacccggagtggagccccgc 1726
>gb|AC119292.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
OSJNBb0088F07, complete sequence
Length = 139180
Score = 63.9 bits (32), Expect = 8e-008
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 283 ttcaacatcatctccggcacgtccatgtcctgcccgcacg 322
|||||| |||||||||||||||||||||| ||||||||||
Sbjct: 63200 ttcaacgtcatctccggcacgtccatgtcgtgcccgcacg 63161
Score = 42.1 bits (21), Expect = 0.31
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 354 gcacccggagtggagccccgc 374
|||||||||||||||||||||
Sbjct: 63129 gcacccggagtggagccccgc 63109
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 763,123
Number of Sequences: 438736
Number of extensions: 763123
Number of successful extensions: 19948
Number of sequences better than 0.5: 167
Number of HSP's better than 0.5 without gapping: 185
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 16735
Number of HSP's gapped (non-prelim): 3189
length of query: 545
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 524
effective length of database: 2,791,206,460
effective search space: 1462592185040
effective search space used: 1462592185040
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)