BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 6293482.2.1
(2042 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AP003909.3| Oryza sativa (japonica cultivar-group) geno... 163 5e-037
dbj|AP004462.3| Oryza sativa (japonica cultivar-group) geno... 163 5e-037
gb|AACV01017101.1| Oryza sativa (japonica cultivar-group) c... 163 5e-037
ref|XM_479695.1| Oryza sativa (japonica cultivar-group), mRNA 163 5e-037
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 163 5e-037
gb|CH401228.1| Oryza sativa (japonica cultivar-group) chrom... 163 5e-037
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 163 5e-037
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 163 5e-037
gb|AACV01017103.1| Oryza sativa (japonica cultivar-group) c... 117 2e-023
ref|XM_479696.1| Oryza sativa (japonica cultivar-group), mRNA 117 2e-023
dbj|AK110565.1| Oryza sativa (japonica cultivar-group) cDNA... 66 8e-008
dbj|AP005308.3| Oryza sativa (japonica cultivar-group) geno... 66 8e-008
dbj|AP005575.3| Oryza sativa (japonica cultivar-group) geno... 66 8e-008
gb|AACV01020124.1| Oryza sativa (japonica cultivar-group) c... 66 8e-008
ref|NT_107084.1| Oryza sativa (japonica cultivar-group) 66 8e-008
gb|CH401242.1| Oryza sativa (japonica cultivar-group) chrom... 66 8e-008
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 66 8e-008
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 66 8e-008
gb|AACV01003510.1| Oryza sativa (japonica cultivar-group) c... 64 3e-007
ref|XM_464378.1| Oryza sativa (japonica cultivar-group), mRNA 64 3e-007
ref|XM_464380.1| Oryza sativa (japonica cultivar-group), mRNA 64 3e-007
ref|NT_107177.1| Oryza sativa (japonica cultivar-group) 64 3e-007
dbj|AP003990.3| Oryza sativa (japonica cultivar-group) geno... 64 3e-007
dbj|AP004000.3| Oryza sativa (japonica cultivar-group) geno... 64 3e-007
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 64 3e-007
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 64 3e-007
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 64 3e-007
gb|CA755419.1|CA755419 BR030020000_PLATE_C01_3_004.ab1 OA O... 62 1e-006
dbj|AK072715.1| Oryza sativa (japonica cultivar-group) cDNA... 62 1e-006
dbj|AK108512.1| Oryza sativa (japonica cultivar-group) cDNA... 62 1e-006
dbj|AK119264.1| Oryza sativa (japonica cultivar-group) cDNA... 62 1e-006
dbj|AK120987.1| Oryza sativa (japonica cultivar-group) cDNA... 62 1e-006
gb|AC109595.2| Oryza sativa (japonica cultivar-group) chrom... 62 1e-006
gb|AACV01000499.1| Oryza sativa (japonica cultivar-group) c... 62 1e-006
gb|AACV01002167.1| Oryza sativa (japonica cultivar-group) c... 62 1e-006
gb|AACV01012211.1| Oryza sativa (japonica cultivar-group) c... 62 1e-006
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 62 1e-006
ref|NM_192202.1| Oryza sativa (japonica cultivar-group), p... 62 1e-006
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 62 1e-006
ref|NT_107212.1| Oryza sativa (japonica cultivar-group) 62 1e-006
ref|NM_188577.1| Oryza sativa (japonica cultivar-group), p... 62 1e-006
ref|NT_036312.3| Oryza sativa (japonica cultivar-group) 62 1e-006
dbj|AP003254.3| Oryza sativa (japonica cultivar-group) geno... 62 1e-006
dbj|AP003434.2| Oryza sativa (japonica cultivar-group) geno... 62 1e-006
dbj|AP003378.4| Oryza sativa (japonica cultivar-group) geno... 62 1e-006
gb|CH401206.1| Oryza sativa (japonica cultivar-group) chrom... 62 1e-006
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 62 1e-006
gb|CH401164.1| Oryza sativa (japonica cultivar-group) chrom... 62 1e-006
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 62 1e-006
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 62 1e-006
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 62 1e-006
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 62 1e-006
dbj|AK067847.1| Oryza sativa (japonica cultivar-group) cDNA... 58 2e-005
gb|AC073867.6| Oryza sativa chromosome 10 BAC OSJNBa0055O03... 58 2e-005
dbj|AP005285.2| Oryza sativa (japonica cultivar-group) geno... 58 2e-005
ref|NT_107233.1| Oryza sativa (japonica cultivar-group) 58 2e-005
dbj|AP003523.3| Oryza sativa (japonica cultivar-group) geno... 58 2e-005
dbj|AP003571.4| Oryza sativa (japonica cultivar-group) geno... 58 2e-005
dbj|AP002968.2| Oryza sativa (japonica cultivar-group) geno... 58 2e-005
dbj|AP003204.3| Oryza sativa (japonica cultivar-group) geno... 58 2e-005
gb|AACV01001144.1| Oryza sativa (japonica cultivar-group) c... 58 2e-005
gb|AACV01004420.1| Oryza sativa (japonica cultivar-group) c... 58 2e-005
gb|AACV01014662.1| Oryza sativa (japonica cultivar-group) c... 58 2e-005
gb|AACV01021929.1| Oryza sativa (japonica cultivar-group) c... 58 2e-005
ref|NM_193877.1| Oryza sativa (japonica cultivar-group), p... 58 2e-005
ref|NM_197316.1| Oryza sativa (japonica cultivar-group) put... 58 2e-005
ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chr... 58 2e-005
ref|XM_465866.1| Oryza sativa (japonica cultivar-group), mRNA 58 2e-005
ref|NT_079947.2| Oryza sativa (japonica cultivar-group) 58 2e-005
ref|NT_107179.1| Oryza sativa (japonica cultivar-group) 58 2e-005
gb|CH401254.1| Oryza sativa (japonica cultivar-group) chrom... 58 2e-005
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 58 2e-005
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 58 2e-005
gb|CH401165.1| Oryza sativa (japonica cultivar-group) chrom... 58 2e-005
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 58 2e-005
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 58 2e-005
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 58 2e-005
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 58 2e-005
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 58 2e-005
gb|CB678280.1|CB678280 OSJNEe15P21.r OSJNEe Oryza sativa (j... 56 8e-005
gb|AACV01001484.1| Oryza sativa (japonica cultivar-group) c... 56 8e-005
ref|NT_079926.2| Oryza sativa (japonica cultivar-group) 56 8e-005
dbj|AP004233.3| Oryza sativa (japonica cultivar-group) geno... 56 8e-005
dbj|AP004232.4| Oryza sativa (japonica cultivar-group) geno... 56 8e-005
gb|CH401166.1| Oryza sativa (japonica cultivar-group) chrom... 56 8e-005
gb|AC092749.1| Genomic sequence for Oryza sativa (japonica ... 54 3e-004
gb|AACV01021311.1| Oryza sativa (japonica cultivar-group) c... 54 3e-004
ref|NM_195945.1| Oryza sativa (japonica cultivar-group) put... 54 3e-004
ref|NT_080065.1| Oryza sativa (japonica cultivar-group) chr... 54 3e-004
gb|CH401253.1| Oryza sativa (japonica cultivar-group) chrom... 54 3e-004
dbj|AK071599.1| Oryza sativa (japonica cultivar-group) cDNA... 52 0.001
dbj|AK121788.1| Oryza sativa (japonica cultivar-group) cDNA... 52 0.001
emb|AL713951.4|CNS07YPU Oryza sativa chromosome 12, . BAC O... 52 0.001
ref|NT_079833.2| Oryza sativa (japonica cultivar-group) 52 0.001
ref|NT_079876.2| Oryza sativa (japonica cultivar-group) 52 0.001
dbj|AP005688.3| Oryza sativa (japonica cultivar-group) geno... 52 0.001
gb|AACV01013868.1| Oryza sativa (japonica cultivar-group) c... 52 0.001
gb|AACV01015225.1| Oryza sativa (japonica cultivar-group) c... 52 0.001
gb|CH401220.1| Oryza sativa (japonica cultivar-group) chrom... 52 0.001
gb|CH401212.1| Oryza sativa (japonica cultivar-group) chrom... 52 0.001
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 52 0.001
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 52 0.001
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 52 0.001
gb|AU174799.1|AU174799 AU174799 Rice cDNA from leaf Oryza s... 50 0.005
gb|CB647739.1|CB647739 OSJNEb10M18.r OSJNEb Oryza sativa (j... 50 0.005
gb|CB653025.1|CB653025 OSJNEc03K11.r OSJNEc Oryza sativa (j... 50 0.005
gb|CB656256.1|CB656256 OSJNEc10G09.f OSJNEc Oryza sativa (j... 50 0.005
gb|CB673485.1|CB673485 OSJNEe08A12.f OSJNEe Oryza sativa (j... 50 0.005
gb|CB685780.1|CB685780 OSJNEf16I01.f OSJNEf Oryza sativa (j... 50 0.005
gb|AC108505.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.005
dbj|AK061866.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.005
dbj|AK065355.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.005
dbj|AK067200.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.005
dbj|AK099695.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.005
dbj|AK100062.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.005
dbj|AK100163.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.005
dbj|AK103567.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.005
dbj|AK120213.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.005
dbj|AK121175.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.005
dbj|AP006265.2| Oryza sativa (japonica cultivar-group) geno... 50 0.005
dbj|AP004704.3| Oryza sativa (japonica cultivar-group) geno... 50 0.005
gb|AC137617.3| Oryza sativa (japonica cultivar-group) chrom... 50 0.005
ref|NT_107126.1| Oryza sativa (japonica cultivar-group) 50 0.005
gb|AC135512.6| Oryza sativa (japonica cultivar-group) chrom... 50 0.005
gb|AC112160.3| Oryza sativa (japonica cultivar-group) chrom... 50 0.005
gb|AC108875.2| Oryza sativa (japonica cultivar-group) chrom... 50 0.005
gb|AACV01000601.1| Oryza sativa (japonica cultivar-group) c... 50 0.005
gb|AACV01004418.1| Oryza sativa (japonica cultivar-group) c... 50 0.005
gb|AACV01009992.1| Oryza sativa (japonica cultivar-group) c... 50 0.005
gb|AACV01009993.1| Oryza sativa (japonica cultivar-group) c... 50 0.005
gb|AACV01012173.1| Oryza sativa (japonica cultivar-group) c... 50 0.005
gb|AACV01012465.1| Oryza sativa (japonica cultivar-group) c... 50 0.005
gb|AACV01018966.1| Oryza sativa (japonica cultivar-group) c... 50 0.005
gb|AACV01023036.1| Oryza sativa (japonica cultivar-group) c... 50 0.005
ref|NM_193326.1| Oryza sativa (japonica cultivar-group), p... 50 0.005
ref|XM_465865.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.005
ref|XM_472907.1| Oryza sativa (japonica cultivar-group), p... 50 0.005
ref|XM_472908.1| Oryza sativa (japonica cultivar-group), p... 50 0.005
ref|XM_479692.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.005
ref|XM_479693.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.005
ref|XM_483653.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.005
ref|NT_079863.2| Oryza sativa (japonica cultivar-group) 50 0.005
ref|NT_107214.1| Oryza sativa (japonica cultivar-group) 50 0.005
gb|CH401263.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.005
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.005
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.005
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.005
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.005
emb|AL606614.3|OSJN00047 Oryza sativa genomic DNA, chromoso... 50 0.005
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 50 0.005
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 50 0.005
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.005
gb|C74921.1|C74921 C74921 Rice cDNA from immature leaf incl... 48 0.019
gb|CB641026.1|CB641026 OSJNEa17I02.f OSJNEa Oryza sativa (j... 48 0.019
gb|AC108760.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.019
dbj|AP004138.1| Oryza sativa (japonica cultivar-group) chro... 48 0.019
dbj|AK058639.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.019
dbj|AK059834.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.019
dbj|AK065334.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.019
dbj|AK066137.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.019
dbj|AK068620.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.019
dbj|AK069494.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.019
dbj|AK100474.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.019
dbj|AK102605.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.019
dbj|AK106139.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.019
gb|AC099043.6| Oryza sativa chromosome 3 BAC OSJNBa0079B15 ... 48 0.019
gb|AC107207.9| Oryza sativa chromosome 3 BAC OSJNBb0106M04 ... 48 0.019
gb|AC108755.2| Oryza sativa (japonica cultivar-group) chrom... 48 0.019
dbj|AP003800.3| Oryza sativa (japonica cultivar-group) geno... 48 0.019
gb|AC147426.2| Oryza sativa chromosome 3 B1377B10 genomic ... 48 0.019
dbj|AP005188.5| Oryza sativa (japonica cultivar-group) geno... 48 0.019
dbj|AP006756.2| Oryza sativa (japonica cultivar-group) geno... 48 0.019
ref|NT_107075.1| Oryza sativa (japonica cultivar-group) 48 0.019
dbj|AP005445.3| Oryza sativa (japonica cultivar-group) geno... 48 0.019
gb|AACV01001578.1| Oryza sativa (japonica cultivar-group) c... 48 0.019
gb|AACV01007816.1| Oryza sativa (japonica cultivar-group) c... 48 0.019
gb|AACV01007990.1| Oryza sativa (japonica cultivar-group) c... 48 0.019
gb|AACV01012692.1| Oryza sativa (japonica cultivar-group) c... 48 0.019
gb|AACV01014852.1| Oryza sativa (japonica cultivar-group) c... 48 0.019
gb|AACV01015292.1| Oryza sativa (japonica cultivar-group) c... 48 0.019
gb|AACV01016110.1| Oryza sativa (japonica cultivar-group) c... 48 0.019
gb|AACV01020382.1| Oryza sativa (japonica cultivar-group) c... 48 0.019
gb|AC104711.2| Oryza sativa (japonica cultivar-group) chrom... 48 0.019
ref|NM_193526.1| Oryza sativa (japonica cultivar-group), p... 48 0.019
ref|XM_469909.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.019
ref|XM_479691.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.019
ref|NT_107187.1| Oryza sativa (japonica cultivar-group) 48 0.019
ref|NT_107209.1| Oryza sativa (japonica cultivar-group) 48 0.019
ref|NT_079916.2| Oryza sativa (japonica cultivar-group) 48 0.019
ref|NT_079879.2| Oryza sativa (japonica cultivar-group) 48 0.019
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 48 0.019
dbj|AP003267.3| Oryza sativa (japonica cultivar-group) geno... 48 0.019
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.019
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.019
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.019
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 48 0.019
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 48 0.019
dbj|AB116527.1| Oryza sativa (japonica cultivar-group) aos ... 48 0.019
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.019
gb|AF377946.3| Oryza sativa (japonica cultivar-group) chrom... 48 0.019
gb|AC146936.4| Oryza sativa (japonica cultivar-group) chrom... 48 0.019
dbj|AK107104.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.075
gb|AC145349.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.075
dbj|AP005846.2| Oryza sativa (japonica cultivar-group) geno... 46 0.075
ref|NT_107133.1| Oryza sativa (japonica cultivar-group) 46 0.075
gb|AACV01003620.1| Oryza sativa (japonica cultivar-group) c... 46 0.075
gb|AACV01023607.1| Oryza sativa (japonica cultivar-group) c... 46 0.075
ref|XM_464659.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.075
ref|NT_107178.1| Oryza sativa (japonica cultivar-group) 46 0.075
gb|CH401265.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.075
gb|C98899.1|C98899 C98899 Rice panicle at flowering stage O... 44 0.30
gb|AU069773.1|AU069773 AU069773 Rice panicle at flowering s... 44 0.30
gb|CA754486.1|CA754486 BR040018000_PLATE_B04_26_031.ab1 OA ... 44 0.30
gb|CB653953.1|CB653953 OSJNEc05H08.f OSJNEc Oryza sativa (j... 44 0.30
gb|CB673486.1|CB673486 OSJNEe08A12.r OSJNEe Oryza sativa (j... 44 0.30
dbj|AK062293.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.30
dbj|AK071407.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.30
dbj|AK111731.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.30
dbj|AK119575.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.30
gb|AC107226.2| Oryza sativa (japonica cultivar-group) chrom... 44 0.30
gb|AC137992.2| Oryza sativa chromosome 3 BAC OSJNBb0056B16 ... 44 0.30
dbj|AP004168.3| Oryza sativa (japonica cultivar-group) geno... 44 0.30
dbj|AP005156.4| Oryza sativa (japonica cultivar-group) geno... 44 0.30
dbj|AP005175.4| Oryza sativa (japonica cultivar-group) geno... 44 0.30
dbj|AP005809.4| Oryza sativa (japonica cultivar-group) geno... 44 0.30
gb|AC135564.4| Oryza sativa chromosome 3 BAC OSJNBb0056O10 ... 44 0.30
gb|AC132485.2| Oryza sativa (japonica cultivar-group) chrom... 44 0.30
gb|AACV01002828.1| Oryza sativa (japonica cultivar-group) c... 44 0.30
gb|AACV01003139.1| Oryza sativa (japonica cultivar-group) c... 44 0.30
gb|AACV01003929.1| Oryza sativa (japonica cultivar-group) c... 44 0.30
gb|AACV01006136.1| Oryza sativa (japonica cultivar-group) c... 44 0.30
gb|AACV01008501.1| Oryza sativa (japonica cultivar-group) c... 44 0.30
gb|AACV01012558.1| Oryza sativa (japonica cultivar-group) c... 44 0.30
gb|AACV01014652.1| Oryza sativa (japonica cultivar-group) c... 44 0.30
gb|AACV01016370.1| Oryza sativa (japonica cultivar-group) c... 44 0.30
gb|AACV01016741.1| Oryza sativa (japonica cultivar-group) c... 44 0.30
gb|AACV01031567.1| Oryza sativa (japonica cultivar-group) C... 44 0.30
ref|NM_189513.1| Oryza sativa (japonica cultivar-group), p... 44 0.30
ref|NM_190212.1| Oryza sativa (japonica cultivar-group), p... 44 0.30
ref|XM_468710.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.30
ref|XM_471134.1| Oryza sativa (japonica cultivar-group), p... 44 0.30
ref|XM_479078.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.30
ref|NT_079923.2| Oryza sativa (japonica cultivar-group) 44 0.30
ref|NT_107174.1| Oryza sativa (japonica cultivar-group) 44 0.30
ref|NT_107189.1| Oryza sativa (japonica cultivar-group) 44 0.30
ref|NT_107194.1| Oryza sativa (japonica cultivar-group) 44 0.30
ref|NT_107217.1| Oryza sativa (japonica cultivar-group) 44 0.30
ref|NT_079921.2| Oryza sativa (japonica cultivar-group) 44 0.30
dbj|AP003431.2| Oryza sativa (japonica cultivar-group) geno... 44 0.30
dbj|AP003228.3| Oryza sativa (japonica cultivar-group) geno... 44 0.30
gb|CH401184.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.30
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.30
emb|AJ535078.1|OSA535078 Oryza sativa (japonica cultivar-gr... 44 0.30
emb|AL662964.3|OSJN00161 Oryza sativa genomic DNA, chromoso... 44 0.30
emb|BX842608.1|OSJN00298 Oryza sativa genomic DNA, chromoso... 44 0.30
dbj|AB200237.1| Oryza sativa (japonica cultivar-group) CRLL... 44 0.30
>dbj|AP003909.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
clone:OJ1300_E01
Length = 103022
Score = 163 bits (82), Expect = 5e-037
Identities = 205/246 (83%)
Strand = Plus / Minus
Query: 1323 acctcctcctcccgcgcgggccgctgcgaccgcaccttgctggcgttgagcaggtgcacg 1382
|||||||||||||| ||||| || | | | |||||||| || |||||||||||| |||
Sbjct: 68813 acctcctcctcccgggcggggcggtaggcctgcaccttgtgggagttgagcaggtggacg 68754
Query: 1383 gtgaccagcttccgcgccttgcggaagtggtcgccgtagggcgcgaagcacgagtcggtg 1442
|||||| ||||| |||||||||| |||||||||||||| || ||||||||||||||
Sbjct: 68753 gtgaccgccttcctgaccttgcggaaatggtcgccgtaggggccgtagcacgagtcggtg 68694
Query: 1443 gcgccgtacatgatgatgtcggacaccagggagcgcgggcgggaggagaagacgtggtcg 1502
|||||||| |||||||||||| |||| || |||||| || || | |||| || |||||
Sbjct: 68693 gcgccgtaggtgatgatgtcggggaccatggcgcgcggccgcgacgcgaaggcgaggtcg 68634
Query: 1503 taggtgcggagcacggcctcggcgacgcgcggcgacgagaccacgacggtcggcacggcg 1562
| ||||||||| |||||||||||| |||||||||| ||||| |||| ||| || |||| |
Sbjct: 68633 tgggtgcggaggacggcctcggcggcgcgcggcgaggagacgacgagggtggggacggag 68574
Query: 1563 ccgagg 1568
||||||
Sbjct: 68573 ccgagg 68568
Score = 117 bits (59), Expect = 2e-023
Identities = 143/171 (83%)
Strand = Plus / Minus
Query: 1402 tgcggaagtggtcgccgtagggcgcgaagcacgagtcggtggcgccgtacatgatgatgt 1461
||||||||||||||| |||||| |||||||| ||||| || ||||||||||||||||
Sbjct: 79488 tgcggaagtggtcgctgtagggggcgaagcaggagtccagcgccccgtacatgatgatgt 79429
Query: 1462 cggacaccagggagcgcgggcgggaggagaagacgtggtcgtaggtgcggagcacggcct 1521
||| |||| ||||||||| || || | |||| || |||||| ||||||||| |||||||
Sbjct: 79428 cggtgaccatggagcgcggccgcgacgcgaaggcgaggtcgtgggtgcggaggacggcct 79369
Query: 1522 cggcgacgcgcggcgacgagaccacgacggtcggcacggcgccgaggcgga 1572
|||| |||||||||| ||||| || | ||| || |||| |||||||||||
Sbjct: 79368 cggctgcgcgcggcgaggagacgaccagggtggggacggagccgaggcgga 79318
Score = 117 bits (59), Expect = 2e-023
Identities = 104/119 (87%)
Strand = Plus / Minus
Query: 1152 gcgttgatgtcggtgagctcccggaacagcctgttgcggccttcctccatggagaacttg 1211
|||||| ||||| ||||||||||||| ||| |||| || ||||||||| | ||||||||
Sbjct: 68987 gcgttggtgtcgatgagctcccggaagagcttgttccgcccttcctcccggaagaacttg 68928
Query: 1212 ccggagacggcgcggcagacgaggttgttgacgaaggagtgcaggagctcgctcatgtc 1270
||||| ||||||||||||| ||||| |||| |||||||||| ||||||||| |||||||
Sbjct: 68927 ccggacacggcgcggcagatgaggtcgttggcgaaggagtggaggagctcggtcatgtc 68869
Score = 56.0 bits (28), Expect = 8e-005
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 903 gccttgatatggtctctggtgaggccatactc 934
|||||||||||||||||||||| |||||||||
Sbjct: 79984 gccttgatatggtctctggtgaagccatactc 79953
Score = 50.1 bits (25), Expect = 0.005
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 1009 catggtcgtcgatgagcttgtcgaggaggtcgtccca 1045
||||||||||||||||| |||||||||| | ||||||
Sbjct: 79881 catggtcgtcgatgagcatgtcgaggagttggtccca 79845
Score = 50.1 bits (25), Expect = 0.005
Identities = 64/77 (83%)
Strand = Plus / Plus
Query: 1472 ggagcgcgggcgggaggagaagacgtggtcgtaggtgcggagcacggcctcggcgacgcg 1531
||||||||| || || | ||| |||||||||| | ||||| |||||||||||| ||||
Sbjct: 63498 ggagcgcggccgcgacgcgaacacgtggtcgtgagcccggaggacggcctcggcggcgcg 63557
Query: 1532 cggcgacgagaccacga 1548
||| |||||||| ||||
Sbjct: 63558 cggggacgagacgacga 63574
Score = 48.1 bits (24), Expect = 0.019
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 1542 accacgacggtcggcacggcgccgaggcggagcagcatcaggtccgggccgt 1593
||||||| ||||| |||| |||||||||||| ||||| ||||| |||||||
Sbjct: 58037 accacgagagtcgggacggtgccgaggcggagaagcattaggtcagggccgt 58088
Score = 44.1 bits (22), Expect = 0.30
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1008 gcatggtcgtcgatgagcttgtcgag 1033
|||||||| |||||||||||||||||
Sbjct: 69131 gcatggtcatcgatgagcttgtcgag 69106
>dbj|AP004462.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0450B04
Length = 153268
Score = 163 bits (82), Expect = 5e-037
Identities = 205/246 (83%)
Strand = Plus / Minus
Query: 1323 acctcctcctcccgcgcgggccgctgcgaccgcaccttgctggcgttgagcaggtgcacg 1382
|||||||||||||| ||||| || | | | |||||||| || |||||||||||| |||
Sbjct: 11901 acctcctcctcccgggcggggcggtaggcctgcaccttgtgggagttgagcaggtggacg 11842
Query: 1383 gtgaccagcttccgcgccttgcggaagtggtcgccgtagggcgcgaagcacgagtcggtg 1442
|||||| ||||| |||||||||| |||||||||||||| || ||||||||||||||
Sbjct: 11841 gtgaccgccttcctgaccttgcggaaatggtcgccgtaggggccgtagcacgagtcggtg 11782
Query: 1443 gcgccgtacatgatgatgtcggacaccagggagcgcgggcgggaggagaagacgtggtcg 1502
|||||||| |||||||||||| |||| || |||||| || || | |||| || |||||
Sbjct: 11781 gcgccgtaggtgatgatgtcggggaccatggcgcgcggccgcgacgcgaaggcgaggtcg 11722
Query: 1503 taggtgcggagcacggcctcggcgacgcgcggcgacgagaccacgacggtcggcacggcg 1562
| ||||||||| |||||||||||| |||||||||| ||||| |||| ||| || |||| |
Sbjct: 11721 tgggtgcggaggacggcctcggcggcgcgcggcgaggagacgacgagggtggggacggag 11662
Query: 1563 ccgagg 1568
||||||
Sbjct: 11661 ccgagg 11656
Score = 117 bits (59), Expect = 2e-023
Identities = 143/171 (83%)
Strand = Plus / Minus
Query: 1402 tgcggaagtggtcgccgtagggcgcgaagcacgagtcggtggcgccgtacatgatgatgt 1461
||||||||||||||| |||||| |||||||| ||||| || ||||||||||||||||
Sbjct: 22576 tgcggaagtggtcgctgtagggggcgaagcaggagtccagcgccccgtacatgatgatgt 22517
Query: 1462 cggacaccagggagcgcgggcgggaggagaagacgtggtcgtaggtgcggagcacggcct 1521
||| |||| ||||||||| || || | |||| || |||||| ||||||||| |||||||
Sbjct: 22516 cggtgaccatggagcgcggccgcgacgcgaaggcgaggtcgtgggtgcggaggacggcct 22457
Query: 1522 cggcgacgcgcggcgacgagaccacgacggtcggcacggcgccgaggcgga 1572
|||| |||||||||| ||||| || | ||| || |||| |||||||||||
Sbjct: 22456 cggctgcgcgcggcgaggagacgaccagggtggggacggagccgaggcgga 22406
Score = 117 bits (59), Expect = 2e-023
Identities = 104/119 (87%)
Strand = Plus / Minus
Query: 1152 gcgttgatgtcggtgagctcccggaacagcctgttgcggccttcctccatggagaacttg 1211
|||||| ||||| ||||||||||||| ||| |||| || ||||||||| | ||||||||
Sbjct: 12075 gcgttggtgtcgatgagctcccggaagagcttgttccgcccttcctcccggaagaacttg 12016
Query: 1212 ccggagacggcgcggcagacgaggttgttgacgaaggagtgcaggagctcgctcatgtc 1270
||||| ||||||||||||| ||||| |||| |||||||||| ||||||||| |||||||
Sbjct: 12015 ccggacacggcgcggcagatgaggtcgttggcgaaggagtggaggagctcggtcatgtc 11957
Score = 56.0 bits (28), Expect = 8e-005
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 903 gccttgatatggtctctggtgaggccatactc 934
|||||||||||||||||||||| |||||||||
Sbjct: 23072 gccttgatatggtctctggtgaagccatactc 23041
Score = 50.1 bits (25), Expect = 0.005
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 1009 catggtcgtcgatgagcttgtcgaggaggtcgtccca 1045
||||||||||||||||| |||||||||| | ||||||
Sbjct: 22969 catggtcgtcgatgagcatgtcgaggagttggtccca 22933
Score = 50.1 bits (25), Expect = 0.005
Identities = 64/77 (83%)
Strand = Plus / Plus
Query: 1472 ggagcgcgggcgggaggagaagacgtggtcgtaggtgcggagcacggcctcggcgacgcg 1531
||||||||| || || | ||| |||||||||| | ||||| |||||||||||| ||||
Sbjct: 6586 ggagcgcggccgcgacgcgaacacgtggtcgtgagcccggaggacggcctcggcggcgcg 6645
Query: 1532 cggcgacgagaccacga 1548
||| |||||||| ||||
Sbjct: 6646 cggggacgagacgacga 6662
Score = 48.1 bits (24), Expect = 0.019
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 1542 accacgacggtcggcacggcgccgaggcggagcagcatcaggtccgggccgt 1593
||||||| ||||| |||| |||||||||||| ||||| ||||| |||||||
Sbjct: 1125 accacgagagtcgggacggtgccgaggcggagaagcattaggtcagggccgt 1176
Score = 44.1 bits (22), Expect = 0.30
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1008 gcatggtcgtcgatgagcttgtcgag 1033
|||||||| |||||||||||||||||
Sbjct: 12219 gcatggtcatcgatgagcttgtcgag 12194
>gb|AACV01017101.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg017101, whole
genome shotgun sequence
Length = 12787
Score = 163 bits (82), Expect = 5e-037
Identities = 205/246 (83%)
Strand = Plus / Plus
Query: 1323 acctcctcctcccgcgcgggccgctgcgaccgcaccttgctggcgttgagcaggtgcacg 1382
|||||||||||||| ||||| || | | | |||||||| || |||||||||||| |||
Sbjct: 1346 acctcctcctcccgggcggggcggtaggcctgcaccttgtgggagttgagcaggtggacg 1405
Query: 1383 gtgaccagcttccgcgccttgcggaagtggtcgccgtagggcgcgaagcacgagtcggtg 1442
|||||| ||||| |||||||||| |||||||||||||| || ||||||||||||||
Sbjct: 1406 gtgaccgccttcctgaccttgcggaaatggtcgccgtaggggccgtagcacgagtcggtg 1465
Query: 1443 gcgccgtacatgatgatgtcggacaccagggagcgcgggcgggaggagaagacgtggtcg 1502
|||||||| |||||||||||| |||| || |||||| || || | |||| || |||||
Sbjct: 1466 gcgccgtaggtgatgatgtcggggaccatggcgcgcggccgcgacgcgaaggcgaggtcg 1525
Query: 1503 taggtgcggagcacggcctcggcgacgcgcggcgacgagaccacgacggtcggcacggcg 1562
| ||||||||| |||||||||||| |||||||||| ||||| |||| ||| || |||| |
Sbjct: 1526 tgggtgcggaggacggcctcggcggcgcgcggcgaggagacgacgagggtggggacggag 1585
Query: 1563 ccgagg 1568
||||||
Sbjct: 1586 ccgagg 1591
Score = 117 bits (59), Expect = 2e-023
Identities = 104/119 (87%)
Strand = Plus / Plus
Query: 1152 gcgttgatgtcggtgagctcccggaacagcctgttgcggccttcctccatggagaacttg 1211
|||||| ||||| ||||||||||||| ||| |||| || ||||||||| | ||||||||
Sbjct: 1172 gcgttggtgtcgatgagctcccggaagagcttgttccgcccttcctcccggaagaacttg 1231
Query: 1212 ccggagacggcgcggcagacgaggttgttgacgaaggagtgcaggagctcgctcatgtc 1270
||||| ||||||||||||| ||||| |||| |||||||||| ||||||||| |||||||
Sbjct: 1232 ccggacacggcgcggcagatgaggtcgttggcgaaggagtggaggagctcggtcatgtc 1290
Score = 50.1 bits (25), Expect = 0.005
Identities = 64/77 (83%)
Strand = Plus / Minus
Query: 1472 ggagcgcgggcgggaggagaagacgtggtcgtaggtgcggagcacggcctcggcgacgcg 1531
||||||||| || || | ||| |||||||||| | ||||| |||||||||||| ||||
Sbjct: 6661 ggagcgcggccgcgacgcgaacacgtggtcgtgagcccggaggacggcctcggcggcgcg 6602
Query: 1532 cggcgacgagaccacga 1548
||| |||||||| ||||
Sbjct: 6601 cggggacgagacgacga 6585
Score = 48.1 bits (24), Expect = 0.019
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 1542 accacgacggtcggcacggcgccgaggcggagcagcatcaggtccgggccgt 1593
||||||| ||||| |||| |||||||||||| ||||| ||||| |||||||
Sbjct: 12122 accacgagagtcgggacggtgccgaggcggagaagcattaggtcagggccgt 12071
Score = 44.1 bits (22), Expect = 0.30
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1008 gcatggtcgtcgatgagcttgtcgag 1033
|||||||| |||||||||||||||||
Sbjct: 1028 gcatggtcatcgatgagcttgtcgag 1053
>ref|XM_479695.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1587
Score = 163 bits (82), Expect = 5e-037
Identities = 205/246 (83%)
Strand = Plus / Minus
Query: 1323 acctcctcctcccgcgcgggccgctgcgaccgcaccttgctggcgttgagcaggtgcacg 1382
|||||||||||||| ||||| || | | | |||||||| || |||||||||||| |||
Sbjct: 539 acctcctcctcccgggcggggcggtaggcctgcaccttgtgggagttgagcaggtggacg 480
Query: 1383 gtgaccagcttccgcgccttgcggaagtggtcgccgtagggcgcgaagcacgagtcggtg 1442
|||||| ||||| |||||||||| |||||||||||||| || ||||||||||||||
Sbjct: 479 gtgaccgccttcctgaccttgcggaaatggtcgccgtaggggccgtagcacgagtcggtg 420
Query: 1443 gcgccgtacatgatgatgtcggacaccagggagcgcgggcgggaggagaagacgtggtcg 1502
|||||||| |||||||||||| |||| || |||||| || || | |||| || |||||
Sbjct: 419 gcgccgtaggtgatgatgtcggggaccatggcgcgcggccgcgacgcgaaggcgaggtcg 360
Query: 1503 taggtgcggagcacggcctcggcgacgcgcggcgacgagaccacgacggtcggcacggcg 1562
| ||||||||| |||||||||||| |||||||||| ||||| |||| ||| || |||| |
Sbjct: 359 tgggtgcggaggacggcctcggcggcgcgcggcgaggagacgacgagggtggggacggag 300
Query: 1563 ccgagg 1568
||||||
Sbjct: 299 ccgagg 294
Score = 117 bits (59), Expect = 2e-023
Identities = 104/119 (87%)
Strand = Plus / Minus
Query: 1152 gcgttgatgtcggtgagctcccggaacagcctgttgcggccttcctccatggagaacttg 1211
|||||| ||||| ||||||||||||| ||| |||| || ||||||||| | ||||||||
Sbjct: 713 gcgttggtgtcgatgagctcccggaagagcttgttccgcccttcctcccggaagaacttg 654
Query: 1212 ccggagacggcgcggcagacgaggttgttgacgaaggagtgcaggagctcgctcatgtc 1270
||||| ||||||||||||| ||||| |||| |||||||||| ||||||||| |||||||
Sbjct: 653 ccggacacggcgcggcagatgaggtcgttggcgaaggagtggaggagctcggtcatgtc 595
Score = 44.1 bits (22), Expect = 0.30
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1008 gcatggtcgtcgatgagcttgtcgag 1033
|||||||| |||||||||||||||||
Sbjct: 857 gcatggtcatcgatgagcttgtcgag 832
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 163 bits (82), Expect = 5e-037
Identities = 205/246 (83%)
Strand = Plus / Minus
Query: 1323 acctcctcctcccgcgcgggccgctgcgaccgcaccttgctggcgttgagcaggtgcacg 1382
|||||||||||||| ||||| || | | | |||||||| || |||||||||||| |||
Sbjct: 68813 acctcctcctcccgggcggggcggtaggcctgcaccttgtgggagttgagcaggtggacg 68754
Query: 1383 gtgaccagcttccgcgccttgcggaagtggtcgccgtagggcgcgaagcacgagtcggtg 1442
|||||| ||||| |||||||||| |||||||||||||| || ||||||||||||||
Sbjct: 68753 gtgaccgccttcctgaccttgcggaaatggtcgccgtaggggccgtagcacgagtcggtg 68694
Query: 1443 gcgccgtacatgatgatgtcggacaccagggagcgcgggcgggaggagaagacgtggtcg 1502
|||||||| |||||||||||| |||| || |||||| || || | |||| || |||||
Sbjct: 68693 gcgccgtaggtgatgatgtcggggaccatggcgcgcggccgcgacgcgaaggcgaggtcg 68634
Query: 1503 taggtgcggagcacggcctcggcgacgcgcggcgacgagaccacgacggtcggcacggcg 1562
| ||||||||| |||||||||||| |||||||||| ||||| |||| ||| || |||| |
Sbjct: 68633 tgggtgcggaggacggcctcggcggcgcgcggcgaggagacgacgagggtggggacggag 68574
Query: 1563 ccgagg 1568
||||||
Sbjct: 68573 ccgagg 68568
Score = 117 bits (59), Expect = 2e-023
Identities = 143/171 (83%)
Strand = Plus / Minus
Query: 1402 tgcggaagtggtcgccgtagggcgcgaagcacgagtcggtggcgccgtacatgatgatgt 1461
||||||||||||||| |||||| |||||||| ||||| || ||||||||||||||||
Sbjct: 79488 tgcggaagtggtcgctgtagggggcgaagcaggagtccagcgccccgtacatgatgatgt 79429
Query: 1462 cggacaccagggagcgcgggcgggaggagaagacgtggtcgtaggtgcggagcacggcct 1521
||| |||| ||||||||| || || | |||| || |||||| ||||||||| |||||||
Sbjct: 79428 cggtgaccatggagcgcggccgcgacgcgaaggcgaggtcgtgggtgcggaggacggcct 79369
Query: 1522 cggcgacgcgcggcgacgagaccacgacggtcggcacggcgccgaggcgga 1572
|||| |||||||||| ||||| || | ||| || |||| |||||||||||
Sbjct: 79368 cggctgcgcgcggcgaggagacgaccagggtggggacggagccgaggcgga 79318
Score = 117 bits (59), Expect = 2e-023
Identities = 104/119 (87%)
Strand = Plus / Minus
Query: 1152 gcgttgatgtcggtgagctcccggaacagcctgttgcggccttcctccatggagaacttg 1211
|||||| ||||| ||||||||||||| ||| |||| || ||||||||| | ||||||||
Sbjct: 68987 gcgttggtgtcgatgagctcccggaagagcttgttccgcccttcctcccggaagaacttg 68928
Query: 1212 ccggagacggcgcggcagacgaggttgttgacgaaggagtgcaggagctcgctcatgtc 1270
||||| ||||||||||||| ||||| |||| |||||||||| ||||||||| |||||||
Sbjct: 68927 ccggacacggcgcggcagatgaggtcgttggcgaaggagtggaggagctcggtcatgtc 68869
Score = 56.0 bits (28), Expect = 8e-005
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 903 gccttgatatggtctctggtgaggccatactc 934
|||||||||||||||||||||| |||||||||
Sbjct: 79984 gccttgatatggtctctggtgaagccatactc 79953
Score = 50.1 bits (25), Expect = 0.005
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 675 agcggcaccggcgggtgcaggcggagcgtctccttga 711
||||||| || ||||||||| ||||||||||||||||
Sbjct: 27234566 agcggcagcgccgggtgcagccggagcgtctccttga 27234602
Score = 50.1 bits (25), Expect = 0.005
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 1009 catggtcgtcgatgagcttgtcgaggaggtcgtccca 1045
||||||||||||||||| |||||||||| | ||||||
Sbjct: 79881 catggtcgtcgatgagcatgtcgaggagttggtccca 79845
Score = 50.1 bits (25), Expect = 0.005
Identities = 64/77 (83%)
Strand = Plus / Plus
Query: 1472 ggagcgcgggcgggaggagaagacgtggtcgtaggtgcggagcacggcctcggcgacgcg 1531
||||||||| || || | ||| |||||||||| | ||||| |||||||||||| ||||
Sbjct: 63498 ggagcgcggccgcgacgcgaacacgtggtcgtgagcccggaggacggcctcggcggcgcg 63557
Query: 1532 cggcgacgagaccacga 1548
||| |||||||| ||||
Sbjct: 63558 cggggacgagacgacga 63574
Score = 48.1 bits (24), Expect = 0.019
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 1542 accacgacggtcggcacggcgccgaggcggagcagcatcaggtccgggccgt 1593
||||||| ||||| |||| |||||||||||| ||||| ||||| |||||||
Sbjct: 58037 accacgagagtcgggacggtgccgaggcggagaagcattaggtcagggccgt 58088
Score = 44.1 bits (22), Expect = 0.30
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1008 gcatggtcgtcgatgagcttgtcgag 1033
|||||||| |||||||||||||||||
Sbjct: 69131 gcatggtcatcgatgagcttgtcgag 69106
>gb|CH401228.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000065
genomic scaffold, whole genome shotgun sequence
Length = 5026603
Score = 163 bits (82), Expect = 5e-037
Identities = 205/246 (83%)
Strand = Plus / Minus
Query: 1323 acctcctcctcccgcgcgggccgctgcgaccgcaccttgctggcgttgagcaggtgcacg 1382
|||||||||||||| ||||| || | | | |||||||| || |||||||||||| |||
Sbjct: 307689 acctcctcctcccgggcggggcggtaggcctgcaccttgtgggagttgagcaggtggacg 307630
Query: 1383 gtgaccagcttccgcgccttgcggaagtggtcgccgtagggcgcgaagcacgagtcggtg 1442
|||||| ||||| |||||||||| |||||||||||||| || ||||||||||||||
Sbjct: 307629 gtgaccgccttcctgaccttgcggaaatggtcgccgtaggggccgtagcacgagtcggtg 307570
Query: 1443 gcgccgtacatgatgatgtcggacaccagggagcgcgggcgggaggagaagacgtggtcg 1502
|||||||| |||||||||||| |||| || |||||| || || | |||| || |||||
Sbjct: 307569 gcgccgtaggtgatgatgtcggggaccatggcgcgcggccgcgacgcgaaggcgaggtcg 307510
Query: 1503 taggtgcggagcacggcctcggcgacgcgcggcgacgagaccacgacggtcggcacggcg 1562
| ||||||||| |||||||||||| |||||||||| ||||| |||| ||| || |||| |
Sbjct: 307509 tgggtgcggaggacggcctcggcggcgcgcggcgaggagacgacgagggtggggacggag 307450
Query: 1563 ccgagg 1568
||||||
Sbjct: 307449 ccgagg 307444
Score = 117 bits (59), Expect = 2e-023
Identities = 143/171 (83%)
Strand = Plus / Minus
Query: 1402 tgcggaagtggtcgccgtagggcgcgaagcacgagtcggtggcgccgtacatgatgatgt 1461
||||||||||||||| |||||| |||||||| ||||| || ||||||||||||||||
Sbjct: 318546 tgcggaagtggtcgctgtagggggcgaagcaggagtccagcgccccgtacatgatgatgt 318487
Query: 1462 cggacaccagggagcgcgggcgggaggagaagacgtggtcgtaggtgcggagcacggcct 1521
||| |||| ||||||||| || || | |||| || |||||| ||||||||| |||||||
Sbjct: 318486 cggtgaccatggagcgcggccgcgacgcgaaggcgaggtcgtgggtgcggaggacggcct 318427
Query: 1522 cggcgacgcgcggcgacgagaccacgacggtcggcacggcgccgaggcgga 1572
|||| |||||||||| ||||| || | ||| || |||| |||||||||||
Sbjct: 318426 cggctgcgcgcggcgaggagacgaccagggtggggacggagccgaggcgga 318376
Score = 117 bits (59), Expect = 2e-023
Identities = 104/119 (87%)
Strand = Plus / Minus
Query: 1152 gcgttgatgtcggtgagctcccggaacagcctgttgcggccttcctccatggagaacttg 1211
|||||| ||||| ||||||||||||| ||| |||| || ||||||||| | ||||||||
Sbjct: 307863 gcgttggtgtcgatgagctcccggaagagcttgttccgcccttcctcccggaagaacttg 307804
Query: 1212 ccggagacggcgcggcagacgaggttgttgacgaaggagtgcaggagctcgctcatgtc 1270
||||| ||||||||||||| ||||| |||| |||||||||| ||||||||| |||||||
Sbjct: 307803 ccggacacggcgcggcagatgaggtcgttggcgaaggagtggaggagctcggtcatgtc 307745
Score = 56.0 bits (28), Expect = 8e-005
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 903 gccttgatatggtctctggtgaggccatactc 934
|||||||||||||||||||||| |||||||||
Sbjct: 319042 gccttgatatggtctctggtgaagccatactc 319011
Score = 50.1 bits (25), Expect = 0.005
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 1009 catggtcgtcgatgagcttgtcgaggaggtcgtccca 1045
||||||||||||||||| |||||||||| | ||||||
Sbjct: 318939 catggtcgtcgatgagcatgtcgaggagttggtccca 318903
Score = 50.1 bits (25), Expect = 0.005
Identities = 64/77 (83%)
Strand = Plus / Plus
Query: 1472 ggagcgcgggcgggaggagaagacgtggtcgtaggtgcggagcacggcctcggcgacgcg 1531
||||||||| || || | ||| |||||||||| | ||||| |||||||||||| ||||
Sbjct: 302374 ggagcgcggccgcgacgcgaacacgtggtcgtgagcccggaggacggcctcggcggcgcg 302433
Query: 1532 cggcgacgagaccacga 1548
||| |||||||| ||||
Sbjct: 302434 cggggacgagacgacga 302450
Score = 48.1 bits (24), Expect = 0.019
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 1542 accacgacggtcggcacggcgccgaggcggagcagcatcaggtccgggccgt 1593
||||||| ||||| |||| |||||||||||| ||||| ||||| |||||||
Sbjct: 296913 accacgagagtcgggacggtgccgaggcggagaagcattaggtcagggccgt 296964
Score = 44.1 bits (22), Expect = 0.30
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1008 gcatggtcgtcgatgagcttgtcgag 1033
|||||||| |||||||||||||||||
Sbjct: 308007 gcatggtcatcgatgagcttgtcgag 307982
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 163 bits (82), Expect = 5e-037
Identities = 205/246 (83%)
Strand = Plus / Minus
Query: 1323 acctcctcctcccgcgcgggccgctgcgaccgcaccttgctggcgttgagcaggtgcacg 1382
|||||||||||||| ||||| || | | | |||||||| || |||||||||||| |||
Sbjct: 307689 acctcctcctcccgggcggggcggtaggcctgcaccttgtgggagttgagcaggtggacg 307630
Query: 1383 gtgaccagcttccgcgccttgcggaagtggtcgccgtagggcgcgaagcacgagtcggtg 1442
|||||| ||||| |||||||||| |||||||||||||| || ||||||||||||||
Sbjct: 307629 gtgaccgccttcctgaccttgcggaaatggtcgccgtaggggccgtagcacgagtcggtg 307570
Query: 1443 gcgccgtacatgatgatgtcggacaccagggagcgcgggcgggaggagaagacgtggtcg 1502
|||||||| |||||||||||| |||| || |||||| || || | |||| || |||||
Sbjct: 307569 gcgccgtaggtgatgatgtcggggaccatggcgcgcggccgcgacgcgaaggcgaggtcg 307510
Query: 1503 taggtgcggagcacggcctcggcgacgcgcggcgacgagaccacgacggtcggcacggcg 1562
| ||||||||| |||||||||||| |||||||||| ||||| |||| ||| || |||| |
Sbjct: 307509 tgggtgcggaggacggcctcggcggcgcgcggcgaggagacgacgagggtggggacggag 307450
Query: 1563 ccgagg 1568
||||||
Sbjct: 307449 ccgagg 307444
Score = 117 bits (59), Expect = 2e-023
Identities = 143/171 (83%)
Strand = Plus / Minus
Query: 1402 tgcggaagtggtcgccgtagggcgcgaagcacgagtcggtggcgccgtacatgatgatgt 1461
||||||||||||||| |||||| |||||||| ||||| || ||||||||||||||||
Sbjct: 318546 tgcggaagtggtcgctgtagggggcgaagcaggagtccagcgccccgtacatgatgatgt 318487
Query: 1462 cggacaccagggagcgcgggcgggaggagaagacgtggtcgtaggtgcggagcacggcct 1521
||| |||| ||||||||| || || | |||| || |||||| ||||||||| |||||||
Sbjct: 318486 cggtgaccatggagcgcggccgcgacgcgaaggcgaggtcgtgggtgcggaggacggcct 318427
Query: 1522 cggcgacgcgcggcgacgagaccacgacggtcggcacggcgccgaggcgga 1572
|||| |||||||||| ||||| || | ||| || |||| |||||||||||
Sbjct: 318426 cggctgcgcgcggcgaggagacgaccagggtggggacggagccgaggcgga 318376
Score = 117 bits (59), Expect = 2e-023
Identities = 104/119 (87%)
Strand = Plus / Minus
Query: 1152 gcgttgatgtcggtgagctcccggaacagcctgttgcggccttcctccatggagaacttg 1211
|||||| ||||| ||||||||||||| ||| |||| || ||||||||| | ||||||||
Sbjct: 307863 gcgttggtgtcgatgagctcccggaagagcttgttccgcccttcctcccggaagaacttg 307804
Query: 1212 ccggagacggcgcggcagacgaggttgttgacgaaggagtgcaggagctcgctcatgtc 1270
||||| ||||||||||||| ||||| |||| |||||||||| ||||||||| |||||||
Sbjct: 307803 ccggacacggcgcggcagatgaggtcgttggcgaaggagtggaggagctcggtcatgtc 307745
Score = 56.0 bits (28), Expect = 8e-005
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 903 gccttgatatggtctctggtgaggccatactc 934
|||||||||||||||||||||| |||||||||
Sbjct: 319042 gccttgatatggtctctggtgaagccatactc 319011
Score = 50.1 bits (25), Expect = 0.005
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 675 agcggcaccggcgggtgcaggcggagcgtctccttga 711
||||||| || ||||||||| ||||||||||||||||
Sbjct: 26219723 agcggcagcgccgggtgcagccggagcgtctccttga 26219759
Score = 50.1 bits (25), Expect = 0.005
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 1009 catggtcgtcgatgagcttgtcgaggaggtcgtccca 1045
||||||||||||||||| |||||||||| | ||||||
Sbjct: 318939 catggtcgtcgatgagcatgtcgaggagttggtccca 318903
Score = 50.1 bits (25), Expect = 0.005
Identities = 64/77 (83%)
Strand = Plus / Plus
Query: 1472 ggagcgcgggcgggaggagaagacgtggtcgtaggtgcggagcacggcctcggcgacgcg 1531
||||||||| || || | ||| |||||||||| | ||||| |||||||||||| ||||
Sbjct: 302374 ggagcgcggccgcgacgcgaacacgtggtcgtgagcccggaggacggcctcggcggcgcg 302433
Query: 1532 cggcgacgagaccacga 1548
||| |||||||| ||||
Sbjct: 302434 cggggacgagacgacga 302450
Score = 48.1 bits (24), Expect = 0.019
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 1542 accacgacggtcggcacggcgccgaggcggagcagcatcaggtccgggccgt 1593
||||||| ||||| |||| |||||||||||| ||||| ||||| |||||||
Sbjct: 296913 accacgagagtcgggacggtgccgaggcggagaagcattaggtcagggccgt 296964
Score = 44.1 bits (22), Expect = 0.30
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1008 gcatggtcgtcgatgagcttgtcgag 1033
|||||||| |||||||||||||||||
Sbjct: 308007 gcatggtcatcgatgagcttgtcgag 307982
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8,
complete sequence
Length = 28434780
Score = 163 bits (82), Expect = 5e-037
Identities = 205/246 (83%)
Strand = Plus / Minus
Query: 1323 acctcctcctcccgcgcgggccgctgcgaccgcaccttgctggcgttgagcaggtgcacg 1382
|||||||||||||| ||||| || | | | |||||||| || |||||||||||| |||
Sbjct: 302387 acctcctcctcccgggcggggcggtaggcctgcaccttgtgggagttgagcaggtggacg 302328
Query: 1383 gtgaccagcttccgcgccttgcggaagtggtcgccgtagggcgcgaagcacgagtcggtg 1442
|||||| ||||| |||||||||| |||||||||||||| || ||||||||||||||
Sbjct: 302327 gtgaccgccttcctgaccttgcggaaatggtcgccgtaggggccgtagcacgagtcggtg 302268
Query: 1443 gcgccgtacatgatgatgtcggacaccagggagcgcgggcgggaggagaagacgtggtcg 1502
|||||||| |||||||||||| |||| || |||||| || || | |||| || |||||
Sbjct: 302267 gcgccgtaggtgatgatgtcggggaccatggcgcgcggccgcgacgcgaaggcgaggtcg 302208
Query: 1503 taggtgcggagcacggcctcggcgacgcgcggcgacgagaccacgacggtcggcacggcg 1562
| ||||||||| |||||||||||| |||||||||| ||||| |||| ||| || |||| |
Sbjct: 302207 tgggtgcggaggacggcctcggcggcgcgcggcgaggagacgacgagggtggggacggag 302148
Query: 1563 ccgagg 1568
||||||
Sbjct: 302147 ccgagg 302142
Score = 117 bits (59), Expect = 2e-023
Identities = 143/171 (83%)
Strand = Plus / Minus
Query: 1402 tgcggaagtggtcgccgtagggcgcgaagcacgagtcggtggcgccgtacatgatgatgt 1461
||||||||||||||| |||||| |||||||| ||||| || ||||||||||||||||
Sbjct: 313062 tgcggaagtggtcgctgtagggggcgaagcaggagtccagcgccccgtacatgatgatgt 313003
Query: 1462 cggacaccagggagcgcgggcgggaggagaagacgtggtcgtaggtgcggagcacggcct 1521
||| |||| ||||||||| || || | |||| || |||||| ||||||||| |||||||
Sbjct: 313002 cggtgaccatggagcgcggccgcgacgcgaaggcgaggtcgtgggtgcggaggacggcct 312943
Query: 1522 cggcgacgcgcggcgacgagaccacgacggtcggcacggcgccgaggcgga 1572
|||| |||||||||| ||||| || | ||| || |||| |||||||||||
Sbjct: 312942 cggctgcgcgcggcgaggagacgaccagggtggggacggagccgaggcgga 312892
Score = 117 bits (59), Expect = 2e-023
Identities = 104/119 (87%)
Strand = Plus / Minus
Query: 1152 gcgttgatgtcggtgagctcccggaacagcctgttgcggccttcctccatggagaacttg 1211
|||||| ||||| ||||||||||||| ||| |||| || ||||||||| | ||||||||
Sbjct: 302561 gcgttggtgtcgatgagctcccggaagagcttgttccgcccttcctcccggaagaacttg 302502
Query: 1212 ccggagacggcgcggcagacgaggttgttgacgaaggagtgcaggagctcgctcatgtc 1270
||||| ||||||||||||| ||||| |||| |||||||||| ||||||||| |||||||
Sbjct: 302501 ccggacacggcgcggcagatgaggtcgttggcgaaggagtggaggagctcggtcatgtc 302443
Score = 56.0 bits (28), Expect = 8e-005
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 903 gccttgatatggtctctggtgaggccatactc 934
|||||||||||||||||||||| |||||||||
Sbjct: 313558 gccttgatatggtctctggtgaagccatactc 313527
Score = 50.1 bits (25), Expect = 0.005
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 675 agcggcaccggcgggtgcaggcggagcgtctccttga 711
||||||| || ||||||||| ||||||||||||||||
Sbjct: 27472653 agcggcagcgccgggtgcagccggagcgtctccttga 27472689
Score = 50.1 bits (25), Expect = 0.005
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 1009 catggtcgtcgatgagcttgtcgaggaggtcgtccca 1045
||||||||||||||||| |||||||||| | ||||||
Sbjct: 313455 catggtcgtcgatgagcatgtcgaggagttggtccca 313419
Score = 50.1 bits (25), Expect = 0.005
Identities = 64/77 (83%)
Strand = Plus / Plus
Query: 1472 ggagcgcgggcgggaggagaagacgtggtcgtaggtgcggagcacggcctcggcgacgcg 1531
||||||||| || || | ||| |||||||||| | ||||| |||||||||||| ||||
Sbjct: 297072 ggagcgcggccgcgacgcgaacacgtggtcgtgagcccggaggacggcctcggcggcgcg 297131
Query: 1532 cggcgacgagaccacga 1548
||| |||||||| ||||
Sbjct: 297132 cggggacgagacgacga 297148
Score = 48.1 bits (24), Expect = 0.019
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 1542 accacgacggtcggcacggcgccgaggcggagcagcatcaggtccgggccgt 1593
||||||| ||||| |||| |||||||||||| ||||| ||||| |||||||
Sbjct: 291611 accacgagagtcgggacggtgccgaggcggagaagcattaggtcagggccgt 291662
Score = 44.1 bits (22), Expect = 0.30
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1008 gcatggtcgtcgatgagcttgtcgag 1033
|||||||| |||||||||||||||||
Sbjct: 302705 gcatggtcatcgatgagcttgtcgag 302680
>gb|AACV01017103.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg017103, whole
genome shotgun sequence
Length = 15027
Score = 117 bits (59), Expect = 2e-023
Identities = 143/171 (83%)
Strand = Plus / Minus
Query: 1402 tgcggaagtggtcgccgtagggcgcgaagcacgagtcggtggcgccgtacatgatgatgt 1461
||||||||||||||| |||||| |||||||| ||||| || ||||||||||||||||
Sbjct: 9102 tgcggaagtggtcgctgtagggggcgaagcaggagtccagcgccccgtacatgatgatgt 9043
Query: 1462 cggacaccagggagcgcgggcgggaggagaagacgtggtcgtaggtgcggagcacggcct 1521
||| |||| ||||||||| || || | |||| || |||||| ||||||||| |||||||
Sbjct: 9042 cggtgaccatggagcgcggccgcgacgcgaaggcgaggtcgtgggtgcggaggacggcct 8983
Query: 1522 cggcgacgcgcggcgacgagaccacgacggtcggcacggcgccgaggcgga 1572
|||| |||||||||| ||||| || | ||| || |||| |||||||||||
Sbjct: 8982 cggctgcgcgcggcgaggagacgaccagggtggggacggagccgaggcgga 8932
Score = 56.0 bits (28), Expect = 8e-005
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 903 gccttgatatggtctctggtgaggccatactc 934
|||||||||||||||||||||| |||||||||
Sbjct: 9598 gccttgatatggtctctggtgaagccatactc 9567
Score = 50.1 bits (25), Expect = 0.005
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 1009 catggtcgtcgatgagcttgtcgaggaggtcgtccca 1045
||||||||||||||||| |||||||||| | ||||||
Sbjct: 9495 catggtcgtcgatgagcatgtcgaggagttggtccca 9459
>ref|XM_479696.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1575
Score = 117 bits (59), Expect = 2e-023
Identities = 143/171 (83%)
Strand = Plus / Minus
Query: 1402 tgcggaagtggtcgccgtagggcgcgaagcacgagtcggtggcgccgtacatgatgatgt 1461
||||||||||||||| |||||| |||||||| ||||| || ||||||||||||||||
Sbjct: 445 tgcggaagtggtcgctgtagggggcgaagcaggagtccagcgccccgtacatgatgatgt 386
Query: 1462 cggacaccagggagcgcgggcgggaggagaagacgtggtcgtaggtgcggagcacggcct 1521
||| |||| ||||||||| || || | |||| || |||||| ||||||||| |||||||
Sbjct: 385 cggtgaccatggagcgcggccgcgacgcgaaggcgaggtcgtgggtgcggaggacggcct 326
Query: 1522 cggcgacgcgcggcgacgagaccacgacggtcggcacggcgccgaggcgga 1572
|||| |||||||||| ||||| || | ||| || |||| |||||||||||
Sbjct: 325 cggctgcgcgcggcgaggagacgaccagggtggggacggagccgaggcgga 275
Score = 60.0 bits (30), Expect = 5e-006
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 885 aacatgtctatcaagatagccttgatatggtctctggtgaggccatactc 934
||||||||||| | || |||||||||||||||||||||| |||||||||
Sbjct: 959 aacatgtctattgatatggccttgatatggtctctggtgaagccatactc 910
Score = 50.1 bits (25), Expect = 0.005
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 1009 catggtcgtcgatgagcttgtcgaggaggtcgtccca 1045
||||||||||||||||| |||||||||| | ||||||
Sbjct: 838 catggtcgtcgatgagcatgtcgaggagttggtccca 802
>dbj|AK110565.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-168-D04, full
insert sequence
Length = 1862
Score = 65.9 bits (33), Expect = 8e-008
Identities = 57/65 (87%)
Strand = Plus / Minus
Query: 662 gtgcgggaggaggagcggcaccggcgggtgcaggcggagcgtctccttgatgacggcctt 721
|||||| || || |||||| ||||||||||||| || |||||||||||||| ||||| ||
Sbjct: 1129 gtgcggcagcagcagcggcgccggcgggtgcagccgcagcgtctccttgatcacggcgtt 1070
Query: 722 gaggt 726
|||||
Sbjct: 1069 gaggt 1065
>dbj|AP005308.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
clone:P0047B10
Length = 158798
Score = 65.9 bits (33), Expect = 8e-008
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 662 gtgcgggaggaggagcggcaccggcgggtgcaggcggagcgtctccttgatgacggcctt 721
|||||| || || |||||| ||||||||||||| || |||||||||||||| ||||| ||
Sbjct: 13409 gtgcggcagcagcagcggcgccggcgggtgcagccgcagcgtctccttgatcacggcgtt 13468
Query: 722 gaggt 726
|||||
Sbjct: 13469 gaggt 13473
>dbj|AP005575.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
clone:OJ1596_C06
Length = 124721
Score = 65.9 bits (33), Expect = 8e-008
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 662 gtgcgggaggaggagcggcaccggcgggtgcaggcggagcgtctccttgatgacggcctt 721
|||||| || || |||||| ||||||||||||| || |||||||||||||| ||||| ||
Sbjct: 72854 gtgcggcagcagcagcggcgccggcgggtgcagccgcagcgtctccttgatcacggcgtt 72913
Query: 722 gaggt 726
|||||
Sbjct: 72914 gaggt 72918
>gb|AACV01020124.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg020124, whole
genome shotgun sequence
Length = 34569
Score = 65.9 bits (33), Expect = 8e-008
Identities = 57/65 (87%)
Strand = Plus / Minus
Query: 662 gtgcgggaggaggagcggcaccggcgggtgcaggcggagcgtctccttgatgacggcctt 721
|||||| || || |||||| ||||||||||||| || |||||||||||||| ||||| ||
Sbjct: 16632 gtgcggcagcagcagcggcgccggcgggtgcagccgcagcgtctccttgatcacggcgtt 16573
Query: 722 gaggt 726
|||||
Sbjct: 16572 gaggt 16568
>ref|NT_107084.1| Oryza sativa (japonica cultivar-group)
Length = 4175757
Score = 65.9 bits (33), Expect = 8e-008
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 662 gtgcgggaggaggagcggcaccggcgggtgcaggcggagcgtctccttgatgacggcctt 721
|||||| || || |||||| ||||||||||||| || |||||||||||||| ||||| ||
Sbjct: 2356518 gtgcggcagcagcagcggcgccggcgggtgcagccgcagcgtctccttgatcacggcgtt 2356577
Query: 722 gaggt 726
|||||
Sbjct: 2356578 gaggt 2356582
>gb|CH401242.1| Oryza sativa (japonica cultivar-group) chromosome 9 scaffold000079 genomic
scaffold, whole genome shotgun sequence
Length = 12069826
Score = 65.9 bits (33), Expect = 8e-008
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 662 gtgcgggaggaggagcggcaccggcgggtgcaggcggagcgtctccttgatgacggcctt 721
|||||| || || |||||| ||||||||||||| || |||||||||||||| ||||| ||
Sbjct: 6007793 gtgcggcagcagcagcggcgccggcgggtgcagccgcagcgtctccttgatcacggcgtt 6007852
Query: 722 gaggt 726
|||||
Sbjct: 6007853 gaggt 6007857
Score = 48.1 bits (24), Expect = 0.019
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1739 cgtcgccgacgccgacgccgacgc 1762
||||||||||||||||||||||||
Sbjct: 9225856 cgtcgccgacgccgacgccgacgc 9225879
>gb|CM000146.1| Oryza sativa (japonica cultivar-group) chromosome 9, whole genome shotgun
sequence
Length = 21543637
Score = 65.9 bits (33), Expect = 8e-008
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 662 gtgcgggaggaggagcggcaccggcgggtgcaggcggagcgtctccttgatgacggcctt 721
|||||| || || |||||| ||||||||||||| || |||||||||||||| ||||| ||
Sbjct: 15481604 gtgcggcagcagcagcggcgccggcgggtgcagccgcagcgtctccttgatcacggcgtt 15481663
Query: 722 gaggt 726
|||||
Sbjct: 15481664 gaggt 15481668
Score = 48.1 bits (24), Expect = 0.019
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1739 cgtcgccgacgccgacgccgacgc 1762
||||||||||||||||||||||||
Sbjct: 18699667 cgtcgccgacgccgacgccgacgc 18699690
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
sequence
Length = 22696651
Score = 65.9 bits (33), Expect = 8e-008
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 662 gtgcgggaggaggagcggcaccggcgggtgcaggcggagcgtctccttgatgacggcctt 721
|||||| || || |||||| ||||||||||||| || |||||||||||||| ||||| ||
Sbjct: 16664715 gtgcggcagcagcagcggcgccggcgggtgcagccgcagcgtctccttgatcacggcgtt 16664774
Query: 722 gaggt 726
|||||
Sbjct: 16664775 gaggt 16664779
Score = 48.1 bits (24), Expect = 0.019
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1739 cgtcgccgacgccgacgccgacgc 1762
||||||||||||||||||||||||
Sbjct: 19724213 cgtcgccgacgccgacgccgacgc 19724236
>gb|AACV01003510.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg003510, whole
genome shotgun sequence
Length = 18403
Score = 63.9 bits (32), Expect = 3e-007
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 664 gcgggaggaggagcggcaccggcgggtgcaggcggagcgtctccttgatgac 715
|||| ||||| |||||| |||||||||| || ||||||||||||||||||||
Sbjct: 10446 gcggcaggagcagcggcgccggcgggtggagccggagcgtctccttgatgac 10497
Score = 63.9 bits (32), Expect = 3e-007
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 675 agcggcaccggcgggtgcaggcggagcgtctccttgatgacggccttgaggt 726
|||||| ||||||||||||| |||||||||||||||| |||| ||||||||
Sbjct: 5991 agcggcgccggcgggtgcagccggagcgtctccttgacgacgagcttgaggt 6042
>ref|XM_464378.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1530
Score = 63.9 bits (32), Expect = 3e-007
Identities = 47/52 (90%)
Strand = Plus / Minus
Query: 664 gcgggaggaggagcggcaccggcgggtgcaggcggagcgtctccttgatgac 715
|||| ||||| |||||| |||||||||| || ||||||||||||||||||||
Sbjct: 1129 gcggcaggagcagcggcgccggcgggtggagccggagcgtctccttgatgac 1078
>ref|XM_464380.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1572
Score = 63.9 bits (32), Expect = 3e-007
Identities = 47/52 (90%)
Strand = Plus / Minus
Query: 675 agcggcaccggcgggtgcaggcggagcgtctccttgatgacggccttgaggt 726
|||||| ||||||||||||| |||||||||||||||| |||| ||||||||
Sbjct: 1145 agcggcgccggcgggtgcagccggagcgtctccttgacgacgagcttgaggt 1094
>ref|NT_107177.1| Oryza sativa (japonica cultivar-group)
Length = 1341590
Score = 63.9 bits (32), Expect = 3e-007
Identities = 47/52 (90%)
Strand = Plus / Minus
Query: 675 agcggcaccggcgggtgcaggcggagcgtctccttgatgacggccttgaggt 726
|||||| ||||||||||||| |||||||||||||||| |||| ||||||||
Sbjct: 201975 agcggcgccggcgggtgcagccggagcgtctccttgacgacgagcttgaggt 201924
Score = 63.9 bits (32), Expect = 3e-007
Identities = 47/52 (90%)
Strand = Plus / Minus
Query: 664 gcgggaggaggagcggcaccggcgggtgcaggcggagcgtctccttgatgac 715
|||| ||||| |||||| |||||||||| || ||||||||||||||||||||
Sbjct: 197523 gcggcaggagcagcggcgccggcgggtggagccggagcgtctccttgatgac 197472
>dbj|AP003990.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1073_F05
Length = 124252
Score = 63.9 bits (32), Expect = 3e-007
Identities = 47/52 (90%)
Strand = Plus / Minus
Query: 675 agcggcaccggcgggtgcaggcggagcgtctccttgatgacggccttgaggt 726
|||||| ||||||||||||| |||||||||||||||| |||| ||||||||
Sbjct: 72062 agcggcgccggcgggtgcagccggagcgtctccttgacgacgagcttgaggt 72011
Score = 63.9 bits (32), Expect = 3e-007
Identities = 47/52 (90%)
Strand = Plus / Minus
Query: 664 gcgggaggaggagcggcaccggcgggtgcaggcggagcgtctccttgatgac 715
|||| ||||| |||||| |||||||||| || ||||||||||||||||||||
Sbjct: 67610 gcggcaggagcagcggcgccggcgggtggagccggagcgtctccttgatgac 67559
>dbj|AP004000.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1115_B01
Length = 129329
Score = 63.9 bits (32), Expect = 3e-007
Identities = 47/52 (90%)
Strand = Plus / Minus
Query: 675 agcggcaccggcgggtgcaggcggagcgtctccttgatgacggccttgaggt 726
|||||| ||||||||||||| |||||||||||||||| |||| ||||||||
Sbjct: 110493 agcggcgccggcgggtgcagccggagcgtctccttgacgacgagcttgaggt 110442
Score = 63.9 bits (32), Expect = 3e-007
Identities = 47/52 (90%)
Strand = Plus / Minus
Query: 664 gcgggaggaggagcggcaccggcgggtgcaggcggagcgtctccttgatgac 715
|||| ||||| |||||| |||||||||| || ||||||||||||||||||||
Sbjct: 106041 gcggcaggagcagcggcgccggcgggtggagccggagcgtctccttgatgac 105990
>gb|CH401169.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000006 genomic
scaffold, whole genome shotgun sequence
Length = 13452964
Score = 63.9 bits (32), Expect = 3e-007
Identities = 47/52 (90%)
Strand = Plus / Minus
Query: 675 agcggcaccggcgggtgcaggcggagcgtctccttgatgacggccttgaggt 726
|||||| ||||||||||||| |||||||||||||||| |||| ||||||||
Sbjct: 4905088 agcggcgccggcgggtgcagccggagcgtctccttgacgacgagcttgaggt 4905037
Score = 63.9 bits (32), Expect = 3e-007
Identities = 47/52 (90%)
Strand = Plus / Minus
Query: 664 gcgggaggaggagcggcaccggcgggtgcaggcggagcgtctccttgatgac 715
|||| ||||| |||||| |||||||||| || ||||||||||||||||||||
Sbjct: 4900633 gcggcaggagcagcggcgccggcgggtggagccggagcgtctccttgatgac 4900582
Score = 46.1 bits (23), Expect = 0.075
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 672 aggagcggcaccggcgggtgcaggcggagcgtctccttgatga 714
||||| || ||||||||||||| ||| || |||||||||||||
Sbjct: 6672528 aggagaggaaccggcgggtgcaagcgaagagtctccttgatga 6672486
Score = 44.1 bits (22), Expect = 0.30
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1742 cgccgacgccgacgccgacgct 1763
||||||||||||||||||||||
Sbjct: 10949058 cgccgacgccgacgccgacgct 10949037
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 63.9 bits (32), Expect = 3e-007
Identities = 47/52 (90%)
Strand = Plus / Minus
Query: 675 agcggcaccggcgggtgcaggcggagcgtctccttgatgacggccttgaggt 726
|||||| ||||||||||||| |||||||||||||||| |||| ||||||||
Sbjct: 4905088 agcggcgccggcgggtgcagccggagcgtctccttgacgacgagcttgaggt 4905037
Score = 63.9 bits (32), Expect = 3e-007
Identities = 47/52 (90%)
Strand = Plus / Minus
Query: 664 gcgggaggaggagcggcaccggcgggtgcaggcggagcgtctccttgatgac 715
|||| ||||| |||||| |||||||||| || ||||||||||||||||||||
Sbjct: 4900633 gcggcaggagcagcggcgccggcgggtggagccggagcgtctccttgatgac 4900582
Score = 58.0 bits (29), Expect = 2e-005
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 671 gaggagcggcaccggcgggtgcaggcggagcgtctcc 707
|||||||||||||||||||| ||| ||||||||||||
Sbjct: 17667879 gaggagcggcaccggcgggtacagccggagcgtctcc 17667843
Score = 50.1 bits (25), Expect = 0.005
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 675 agcggcaccggcgggtgcaggcggagcgtctcc 707
|||||||||||||||| ||| ||||||||||||
Sbjct: 17660664 agcggcaccggcgggtacagccggagcgtctcc 17660632
Score = 46.1 bits (23), Expect = 0.075
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 672 aggagcggcaccggcgggtgcaggcggagcgtctccttgatga 714
||||| || ||||||||||||| ||| || |||||||||||||
Sbjct: 6672528 aggagaggaaccggcgggtgcaagcgaagagtctccttgatga 6672486
Score = 44.1 bits (22), Expect = 0.30
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1742 cgccgacgccgacgccgacgct 1763
||||||||||||||||||||||
Sbjct: 10949058 cgccgacgccgacgccgacgct 10949037
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 63.9 bits (32), Expect = 3e-007
Identities = 47/52 (90%)
Strand = Plus / Minus
Query: 675 agcggcaccggcgggtgcaggcggagcgtctccttgatgacggccttgaggt 726
|||||| ||||||||||||| |||||||||||||||| |||| ||||||||
Sbjct: 4829903 agcggcgccggcgggtgcagccggagcgtctccttgacgacgagcttgaggt 4829852
Score = 63.9 bits (32), Expect = 3e-007
Identities = 47/52 (90%)
Strand = Plus / Minus
Query: 664 gcgggaggaggagcggcaccggcgggtgcaggcggagcgtctccttgatgac 715
|||| ||||| |||||| |||||||||| || ||||||||||||||||||||
Sbjct: 4825451 gcggcaggagcagcggcgccggcgggtggagccggagcgtctccttgatgac 4825400
Score = 58.0 bits (29), Expect = 2e-005
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 671 gaggagcggcaccggcgggtgcaggcggagcgtctcc 707
|||||||||||||||||||| ||| ||||||||||||
Sbjct: 17982035 gaggagcggcaccggcgggtacagccggagcgtctcc 17981999
Score = 50.1 bits (25), Expect = 0.005
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 675 agcggcaccggcgggtgcaggcggagcgtctcc 707
|||||||||||||||| ||| ||||||||||||
Sbjct: 17974844 agcggcaccggcgggtacagccggagcgtctcc 17974812
Score = 46.1 bits (23), Expect = 0.075
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 672 aggagcggcaccggcgggtgcaggcggagcgtctccttgatga 714
||||| || ||||||||||||| ||| || |||||||||||||
Sbjct: 6560710 aggagaggaaccggcgggtgcaagcgaagagtctccttgatga 6560668
Score = 44.1 bits (22), Expect = 0.30
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1742 cgccgacgccgacgccgacgct 1763
||||||||||||||||||||||
Sbjct: 10914445 cgccgacgccgacgccgacgct 10914424
>gb|CA755419.1|CA755419 BR030020000_PLATE_C01_3_004.ab1 OA Oryza sativa (japonica
cultivar-group) cDNA clone
BR030020000_PLATE_C01_3_004.ab1 similar to cytochrome
P450 [Nepeta racemosa], mRNA sequence
Length = 614
Score = 61.9 bits (31), Expect = 1e-006
Identities = 55/63 (87%)
Strand = Plus / Minus
Query: 664 gcgggaggaggagcggcaccggcgggtgcaggcggagcgtctccttgatgacggccttga 723
|||||| ||| || |||||||||||||| || |||||||||||||| | ||||||||||
Sbjct: 336 gcgggacgagcagtggcaccggcgggtggagccggagcgtctccttcaccacggccttga 277
Query: 724 ggt 726
|||
Sbjct: 276 ggt 274
>dbj|AK072715.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023141G11, full
insert sequence
Length = 1678
Score = 61.9 bits (31), Expect = 1e-006
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 678 ggcaccggcgggtgcaggcggagcgtctccttgat 712
||||||||||||||||| |||||||||||||||||
Sbjct: 863 ggcaccggcgggtgcagccggagcgtctccttgat 829
Score = 44.1 bits (22), Expect = 0.30
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 446 gcacatcctccgcccggacccgaacg 471
|||||||||||| |||||||||||||
Sbjct: 1092 gcacatcctccggccggacccgaacg 1067
>dbj|AK108512.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-144-A06, full
insert sequence
Length = 934
Score = 61.9 bits (31), Expect = 1e-006
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 675 agcggcaccggcgggtgcaggcggagcgtctccttgatgacggccttgagg 725
||||||||||||| |||||| |||||||||||||||| |||||| |||||
Sbjct: 167 agcggcaccggcgcgtgcagccggagcgtctccttgaccacggccctgagg 117
>dbj|AK119264.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-130-A04, full
insert sequence
Length = 1065
Score = 61.9 bits (31), Expect = 1e-006
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 678 ggcaccggcgggtgcaggcggagcgtctccttgat 712
||||||||||||||||| |||||||||||||||||
Sbjct: 610 ggcaccggcgggtgcagccggagcgtctccttgat 576
Score = 44.1 bits (22), Expect = 0.30
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 446 gcacatcctccgcccggacccgaacg 471
|||||||||||| |||||||||||||
Sbjct: 839 gcacatcctccggccggacccgaacg 814
>dbj|AK120987.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023042L02, full
insert sequence
Length = 1723
Score = 61.9 bits (31), Expect = 1e-006
Identities = 55/63 (87%)
Strand = Plus / Minus
Query: 664 gcgggaggaggagcggcaccggcgggtgcaggcggagcgtctccttgatgacggccttga 723
|||||| ||| || |||||||||||||| || |||||||||||||| | ||||||||||
Sbjct: 1211 gcgggacgagcagtggcaccggcgggtggagccggagcgtctccttcaccacggccttga 1152
Query: 724 ggt 726
|||
Sbjct: 1151 ggt 1149
>gb|AC109595.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1212_B02,
complete sequence
Length = 125650
Score = 61.9 bits (31), Expect = 1e-006
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 664 gcgggaggaggagcggcaccggcgggtgcaggcggagcgtctccttgatgacggccttga 723
|||||| ||| || |||||||||||||| || |||||||||||||| | ||||||||||
Sbjct: 70839 gcgggacgagcagtggcaccggcgggtggagccggagcgtctccttcaccacggccttga 70898
Query: 724 ggt 726
|||
Sbjct: 70899 ggt 70901
>gb|AACV01000499.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg000499, whole
genome shotgun sequence
Length = 22362
Score = 61.9 bits (31), Expect = 1e-006
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 675 agcggcaccggcgggtgcaggcggagcgtctccttgatgacggccttgagg 725
||||||||||||| |||||| |||||||||||||||| |||||| |||||
Sbjct: 10826 agcggcaccggcgcgtgcagccggagcgtctccttgaccacggccctgagg 10876
>gb|AACV01002167.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002167, whole
genome shotgun sequence
Length = 53266
Score = 61.9 bits (31), Expect = 1e-006
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 678 ggcaccggcgggtgcaggcggagcgtctccttgat 712
||||||||||||||||| |||||||||||||||||
Sbjct: 48381 ggcaccggcgggtgcagccggagcgtctccttgat 48347
Score = 44.1 bits (22), Expect = 0.30
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 446 gcacatcctccgcccggacccgaacg 471
|||||||||||| |||||||||||||
Sbjct: 48610 gcacatcctccggccggacccgaacg 48585
>gb|AACV01012211.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg012211, whole
genome shotgun sequence
Length = 47359
Score = 61.9 bits (31), Expect = 1e-006
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 664 gcgggaggaggagcggcaccggcgggtgcaggcggagcgtctccttgatgacggccttga 723
|||||| ||| || |||||||||||||| || |||||||||||||| | ||||||||||
Sbjct: 36217 gcgggacgagcagtggcaccggcgggtggagccggagcgtctccttcaccacggccttga 36276
Query: 724 ggt 726
|||
Sbjct: 36277 ggt 36279
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 61.9 bits (31), Expect = 1e-006
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 678 ggcaccggcgggtgcaggcggagcgtctccttgat 712
||||||||||||||||| |||||||||||||||||
Sbjct: 29066395 ggcaccggcgggtgcagccggagcgtctccttgat 29066361
Score = 61.9 bits (31), Expect = 1e-006
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 675 agcggcaccggcgggtgcaggcggagcgtctccttgatgacggccttgagg 725
||||||||||||| |||||| |||||||||||||||| |||||| |||||
Sbjct: 7046889 agcggcaccggcgcgtgcagccggagcgtctccttgaccacggccctgagg 7046839
Score = 58.0 bits (29), Expect = 2e-005
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 680 caccggcgggtgcaggcggagcgtctccttgatgacg 716
||||||||||||||| ||||||| |||||||||||||
Sbjct: 15562183 caccggcgggtgcagccggagcgactccttgatgacg 15562219
Score = 56.0 bits (28), Expect = 8e-005
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 699 agcgtctccttgatgacggccttgaggtcggtcatg 734
||||||||||||||||| |||||||||| |||||||
Sbjct: 20201101 agcgtctccttgatgacagccttgaggtaggtcatg 20201066
Score = 50.1 bits (25), Expect = 0.005
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 702 gtctccttgatgacggccttgaggtcggtcatg 734
|||||||||||||| |||||||||| |||||||
Sbjct: 20230499 gtctccttgatgacagccttgaggtaggtcatg 20230467
Score = 48.1 bits (24), Expect = 0.019
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 444 gggcacatcctccgcccggacccgaacg 471
||||||| ||||||||||||||||||||
Sbjct: 21417383 gggcacagcctccgcccggacccgaacg 21417410
Score = 44.1 bits (22), Expect = 0.30
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1742 cgccgacgccgacgccgacgct 1763
||||||||||||||||||||||
Sbjct: 43269321 cgccgacgccgacgccgacgct 43269300
Score = 44.1 bits (22), Expect = 0.30
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1742 cgccgacgccgacgccgacgct 1763
||||||||||||||||||||||
Sbjct: 38751204 cgccgacgccgacgccgacgct 38751183
Score = 44.1 bits (22), Expect = 0.30
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 446 gcacatcctccgcccggacccgaacg 471
|||||||||||| |||||||||||||
Sbjct: 29066624 gcacatcctccggccggacccgaacg 29066599
>ref|NM_192202.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1530
Score = 61.9 bits (31), Expect = 1e-006
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 678 ggcaccggcgggtgcaggcggagcgtctccttgat 712
||||||||||||||||| |||||||||||||||||
Sbjct: 1109 ggcaccggcgggtgcagccggagcgtctccttgat 1075
Score = 44.1 bits (22), Expect = 0.30
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 446 gcacatcctccgcccggacccgaacg 471
|||||||||||| |||||||||||||
Sbjct: 1338 gcacatcctccggccggacccgaacg 1313
>ref|NT_079927.2| Oryza sativa (japonica cultivar-group)
Length = 14818989
Score = 61.9 bits (31), Expect = 1e-006
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 678 ggcaccggcgggtgcaggcggagcgtctccttgat 712
||||||||||||||||| |||||||||||||||||
Sbjct: 3513778 ggcaccggcgggtgcagccggagcgtctccttgat 3513744
Score = 44.1 bits (22), Expect = 0.30
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1742 cgccgacgccgacgccgacgct 1763
||||||||||||||||||||||
Sbjct: 13198587 cgccgacgccgacgccgacgct 13198566
Score = 44.1 bits (22), Expect = 0.30
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 446 gcacatcctccgcccggacccgaacg 471
|||||||||||| |||||||||||||
Sbjct: 3514007 gcacatcctccggccggacccgaacg 3513982
>ref|NT_107212.1| Oryza sativa (japonica cultivar-group)
Length = 2712182
Score = 61.9 bits (31), Expect = 1e-006
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 664 gcgggaggaggagcggcaccggcgggtgcaggcggagcgtctccttgatgacggccttga 723
|||||| ||| || |||||||||||||| || |||||||||||||| | ||||||||||
Sbjct: 1954163 gcgggacgagcagtggcaccggcgggtggagccggagcgtctccttcaccacggccttga 1954222
Query: 724 ggt 726
|||
Sbjct: 1954223 ggt 1954225
Score = 50.1 bits (25), Expect = 0.005
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 677 cggcaccggcgggtgcaggcggagcgtctccttgatg 713
|||| |||| |||||||| ||||||||||||||||||
Sbjct: 1488842 cggcgccggagggtgcagccggagcgtctccttgatg 1488806
>ref|NM_188577.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1677
Score = 61.9 bits (31), Expect = 1e-006
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 675 agcggcaccggcgggtgcaggcggagcgtctccttgatgacggccttgagg 725
||||||||||||| |||||| |||||||||||||||| |||||| |||||
Sbjct: 1235 agcggcaccggcgcgtgcagccggagcgtctccttgaccacggccctgagg 1185
>ref|NT_036312.3| Oryza sativa (japonica cultivar-group)
Length = 10050053
Score = 61.9 bits (31), Expect = 1e-006
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 675 agcggcaccggcgggtgcaggcggagcgtctccttgatgacggccttgagg 725
||||||||||||| |||||| |||||||||||||||| |||||| |||||
Sbjct: 7046729 agcggcaccggcgcgtgcagccggagcgtctccttgaccacggccctgagg 7046679
>dbj|AP003254.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0454A11
Length = 152240
Score = 61.9 bits (31), Expect = 1e-006
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 678 ggcaccggcgggtgcaggcggagcgtctccttgat 712
||||||||||||||||| |||||||||||||||||
Sbjct: 98348 ggcaccggcgggtgcagccggagcgtctccttgat 98314
Score = 44.1 bits (22), Expect = 0.30
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 446 gcacatcctccgcccggacccgaacg 471
|||||||||||| |||||||||||||
Sbjct: 98577 gcacatcctccggccggacccgaacg 98552
>dbj|AP003434.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0452F10
Length = 145120
Score = 61.9 bits (31), Expect = 1e-006
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 675 agcggcaccggcgggtgcaggcggagcgtctccttgatgacggccttgagg 725
||||||||||||| |||||| |||||||||||||||| |||||| |||||
Sbjct: 36687 agcggcaccggcgcgtgcagccggagcgtctccttgaccacggccctgagg 36637
>dbj|AP003378.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0047E11
Length = 148109
Score = 61.9 bits (31), Expect = 1e-006
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 678 ggcaccggcgggtgcaggcggagcgtctccttgat 712
||||||||||||||||| |||||||||||||||||
Sbjct: 30083 ggcaccggcgggtgcagccggagcgtctccttgat 30049
Score = 44.1 bits (22), Expect = 0.30
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 446 gcacatcctccgcccggacccgaacg 471
|||||||||||| |||||||||||||
Sbjct: 30312 gcacatcctccggccggacccgaacg 30287
>gb|CH401206.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000043 genomic
scaffold, whole genome shotgun sequence
Length = 11965857
Score = 61.9 bits (31), Expect = 1e-006
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 664 gcgggaggaggagcggcaccggcgggtgcaggcggagcgtctccttgatgacggccttga 723
|||||| ||| || |||||||||||||| || |||||||||||||| | ||||||||||
Sbjct: 3001771 gcgggacgagcagtggcaccggcgggtggagccggagcgtctccttcaccacggccttga 3001830
Query: 724 ggt 726
|||
Sbjct: 3001831 ggt 3001833
Score = 50.1 bits (25), Expect = 0.005
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 662 gtgcgggaggaggagcggcaccggcgggtgcaggcggagcgtctccttgatgacggc 718
||||||||| | |||||| |||||||||||| ||||||| |||||||| ||||||
Sbjct: 6507699 gtgcgggagcatcagcggcgtcggcgggtgcagccggagcgactccttgacgacggc 6507643
Score = 50.1 bits (25), Expect = 0.005
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 677 cggcaccggcgggtgcaggcggagcgtctccttgatg 713
|||| |||| |||||||| ||||||||||||||||||
Sbjct: 2540165 cggcgccggagggtgcagccggagcgtctccttgatg 2540129
Score = 48.1 bits (24), Expect = 0.019
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1739 cgtcgccgacgccgacgccgacgc 1762
||||||||||||||||||||||||
Sbjct: 10009093 cgtcgccgacgccgacgccgacgc 10009116
Score = 44.1 bits (22), Expect = 0.30
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 664 gcgggaggaggagcggcaccggcgggtgcaggcg 697
|||||| ||| ||||||||||||||||| |||||
Sbjct: 7776410 gcgggatgagcagcggcaccggcgggtggaggcg 7776377
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 61.9 bits (31), Expect = 1e-006
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 678 ggcaccggcgggtgcaggcggagcgtctccttgat 712
||||||||||||||||| |||||||||||||||||
Sbjct: 3456196 ggcaccggcgggtgcagccggagcgtctccttgat 3456162
Score = 44.1 bits (22), Expect = 0.30
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1742 cgccgacgccgacgccgacgct 1763
||||||||||||||||||||||
Sbjct: 17332296 cgccgacgccgacgccgacgct 17332275
Score = 44.1 bits (22), Expect = 0.30
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1742 cgccgacgccgacgccgacgct 1763
||||||||||||||||||||||
Sbjct: 12930327 cgccgacgccgacgccgacgct 12930306
Score = 44.1 bits (22), Expect = 0.30
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 446 gcacatcctccgcccggacccgaacg 471
|||||||||||| |||||||||||||
Sbjct: 3456425 gcacatcctccggccggacccgaacg 3456400
>gb|CH401164.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000001 genomic
scaffold, whole genome shotgun sequence
Length = 11616395
Score = 61.9 bits (31), Expect = 1e-006
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 675 agcggcaccggcgggtgcaggcggagcgtctccttgatgacggccttgagg 725
||||||||||||| |||||| |||||||||||||||| |||||| |||||
Sbjct: 7127394 agcggcaccggcgcgtgcagccggagcgtctccttgaccacggccctgagg 7127344
Score = 50.1 bits (25), Expect = 0.005
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 702 gtctccttgatgacggccttgaggtcggtcatg 734
|||||||||||||| |||||||||| |||||||
Sbjct: 8611698 gtctccttgatgacagccttgaggtaggtcatg 8611730
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 61.9 bits (31), Expect = 1e-006
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 664 gcgggaggaggagcggcaccggcgggtgcaggcggagcgtctccttgatgacggccttga 723
|||||| ||| || |||||||||||||| || |||||||||||||| | ||||||||||
Sbjct: 20302084 gcgggacgagcagtggcaccggcgggtggagccggagcgtctccttcaccacggccttga 20302143
Query: 724 ggt 726
|||
Sbjct: 20302144 ggt 20302146
Score = 50.1 bits (25), Expect = 0.005
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 662 gtgcgggaggaggagcggcaccggcgggtgcaggcggagcgtctccttgatgacggc 718
||||||||| | |||||| |||||||||||| ||||||| |||||||| ||||||
Sbjct: 23808012 gtgcgggagcatcagcggcgtcggcgggtgcagccggagcgactccttgacgacggc 23807956
Score = 50.1 bits (25), Expect = 0.005
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 677 cggcaccggcgggtgcaggcggagcgtctccttgatg 713
|||| |||| |||||||| ||||||||||||||||||
Sbjct: 19840478 cggcgccggagggtgcagccggagcgtctccttgatg 19840442
Score = 48.1 bits (24), Expect = 0.019
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1739 cgtcgccgacgccgacgccgacgc 1762
||||||||||||||||||||||||
Sbjct: 27309406 cgtcgccgacgccgacgccgacgc 27309429
Score = 44.1 bits (22), Expect = 0.30
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 664 gcgggaggaggagcggcaccggcgggtgcaggcg 697
|||||| ||| ||||||||||||||||| |||||
Sbjct: 25076723 gcgggatgagcagcggcaccggcgggtggaggcg 25076690
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 61.9 bits (31), Expect = 1e-006
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 678 ggcaccggcgggtgcaggcggagcgtctccttgat 712
||||||||||||||||| |||||||||||||||||
Sbjct: 28657917 ggcaccggcgggtgcagccggagcgtctccttgat 28657883
Score = 61.9 bits (31), Expect = 1e-006
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 675 agcggcaccggcgggtgcaggcggagcgtctccttgatgacggccttgagg 725
||||||||||||| |||||| |||||||||||||||| |||||| |||||
Sbjct: 7127394 agcggcaccggcgcgtgcagccggagcgtctccttgaccacggccctgagg 7127344
Score = 58.0 bits (29), Expect = 2e-005
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 680 caccggcgggtgcaggcggagcgtctccttgatgacg 716
||||||||||||||| ||||||| |||||||||||||
Sbjct: 15595244 caccggcgggtgcagccggagcgactccttgatgacg 15595280
Score = 56.0 bits (28), Expect = 8e-005
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 699 agcgtctccttgatgacggccttgaggtcggtcatg 734
||||||||||||||||| |||||||||| |||||||
Sbjct: 19793896 agcgtctccttgatgacagccttgaggtaggtcatg 19793861
Score = 50.1 bits (25), Expect = 0.005
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 702 gtctccttgatgacggccttgaggtcggtcatg 734
|||||||||||||| |||||||||| |||||||
Sbjct: 8611698 gtctccttgatgacagccttgaggtaggtcatg 8611730
Score = 48.1 bits (24), Expect = 0.019
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 444 gggcacatcctccgcccggacccgaacg 471
||||||| ||||||||||||||||||||
Sbjct: 20874897 gggcacagcctccgcccggacccgaacg 20874924
Score = 44.1 bits (22), Expect = 0.30
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1742 cgccgacgccgacgccgacgct 1763
||||||||||||||||||||||
Sbjct: 42534017 cgccgacgccgacgccgacgct 42533996
Score = 44.1 bits (22), Expect = 0.30
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1742 cgccgacgccgacgccgacgct 1763
||||||||||||||||||||||
Sbjct: 38132048 cgccgacgccgacgccgacgct 38132027
Score = 44.1 bits (22), Expect = 0.30
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 446 gcacatcctccgcccggacccgaacg 471
|||||||||||| |||||||||||||
Sbjct: 28658146 gcacatcctccggccggacccgaacg 28658121
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,953,148
Number of Sequences: 438736
Number of extensions: 3953148
Number of successful extensions: 61181
Number of sequences better than 0.5: 257
Number of HSP's better than 0.5 without gapping: 322
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 46502
Number of HSP's gapped (non-prelim): 14496
length of query: 2042
length of database: 2,800,419,916
effective HSP length: 22
effective length of query: 2020
effective length of database: 2,790,767,724
effective search space: 5637350802480
effective search space used: 5637350802480
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)