BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 5705280.3.1
(980 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AQ795019.1|AQ795019 nbxb0054K18r CUGI Rice BAC Library O... 107 1e-020
dbj|AK111508.1| Oryza sativa (japonica cultivar-group) cDNA... 107 1e-020
dbj|AK111662.1| Oryza sativa (japonica cultivar-group) cDNA... 107 1e-020
gb|AACV01010425.1| Oryza sativa (japonica cultivar-group) c... 107 1e-020
ref|XM_462692.1| Oryza sativa (japonica cultivar-group), p... 107 1e-020
ref|XM_473747.1| Oryza sativa (japonica cultivar-group), p... 107 1e-020
ref|NT_079866.2| Oryza sativa (japonica cultivar-group) 107 1e-020
ref|NT_107105.1| Oryza sativa genomic DNA, chromosome 4, BA... 107 1e-020
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 107 1e-020
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 107 1e-020
emb|AL606683.3|OSJN00089 Oryza sativa genomic DNA, chromoso... 107 1e-020
emb|AL607004.4|OSJN00129 Oryza sativa genomic DNA, chromoso... 107 1e-020
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 107 1e-020
dbj|AG022107.1| Oryza sativa (japonica cultivar-group) DNA,... 88 1e-014
ref|XM_483199.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.002
dbj|AP004064.3| Oryza sativa (japonica cultivar-group) geno... 48 0.009
gb|AACV01005617.1| Oryza sativa (japonica cultivar-group) c... 48 0.009
ref|XM_468307.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.009
ref|NT_107182.1| Oryza sativa (japonica cultivar-group) 48 0.009
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.009
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.009
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 48 0.009
gb|AACV01018806.1| Oryza sativa (japonica cultivar-group) c... 42 0.56
dbj|AP003892.3| Oryza sativa (japonica cultivar-group) geno... 42 0.56
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 42 0.56
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.56
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.56
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 42 0.56
gb|CZ553515.1|CZ553515 M0010227 AS_TRIM_TDNA_B1 Oryza sativ... 40 2.2
dbj|AK071360.1| Oryza sativa (japonica cultivar-group) cDNA... 40 2.2
dbj|AP005555.3| Oryza sativa (japonica cultivar-group) geno... 40 2.2
gb|AACV01020218.1| Oryza sativa (japonica cultivar-group) c... 40 2.2
ref|XM_450981.1| Oryza sativa (japonica cultivar-group), mRNA 40 2.2
ref|NT_107084.1| Oryza sativa (japonica cultivar-group) 40 2.2
dbj|AP005573.3| Oryza sativa (japonica cultivar-group) geno... 40 2.2
gb|CH401242.1| Oryza sativa (japonica cultivar-group) chrom... 40 2.2
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 40 2.2
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 40 2.2
gb|AQ446878.2|AQ446878 nbxb0076L17f CUGI Rice BAC Library O... 38 8.7
dbj|AP003509.3| Oryza sativa (japonica cultivar-group) geno... 38 8.7
gb|AACV01003217.1| Oryza sativa (japonica cultivar-group) c... 38 8.7
ref|NT_079873.2| Oryza sativa (japonica cultivar-group) 38 8.7
dbj|AP004121.3| Oryza sativa (japonica cultivar-group) geno... 38 8.7
ref|NT_107175.1| Oryza sativa (japonica cultivar-group) 38 8.7
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 38 8.7
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 38 8.7
>gb|AQ795019.1|AQ795019 nbxb0054K18r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0054K18r, DNA sequence
Length = 418
Score = 107 bits (54), Expect = 1e-020
Identities = 108/126 (85%)
Strand = Plus / Minus
Query: 192 ccttgaggggaccgtcttcacattctcagacacaaggaacaagttcacagctctgggttg 251
||||||||||||| ||||| |||||||| ||||| ||||| || ||||||||||||||
Sbjct: 202 ccttgaggggaccaatttcacgttctcagatacaagaaacaaatttacagctctgggttg 143
Query: 252 taacgtggtggccatgcttttgaatggcagcacggggtatagcggtggctgtgcttcctt 311
| | |||| |||||||| ||||| || |||| ||||||||||||||||||||||| ||
Sbjct: 142 tgatatggtagccatgctattgaacggtagcagcgggtatagcggtggctgtgcttcttt 83
Query: 312 ttgctc 317
||||||
Sbjct: 82 ttgctc 77
Score = 81.8 bits (41), Expect = 6e-013
Identities = 68/77 (88%)
Strand = Plus / Minus
Query: 87 catgcttgggattcttgacatctcgttgcttgatggtcttgtgagcatattggctagtgc 146
|||| ||||||||||| ||||||||||||| |||||| |||| ||||| ||||| |||||
Sbjct: 298 catgtttgggattcttaacatctcgttgctggatggttttgtaagcatcttggccagtgc 239
Query: 147 tagttctcagcagtgca 163
| ||||||||||||||
Sbjct: 238 cacttctcagcagtgca 222
Score = 44.1 bits (22), Expect = 0.14
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 346 tgctctggggtggcttgctgccaagc 371
|||||||| |||||||||||||||||
Sbjct: 48 tgctctggcgtggcttgctgccaagc 23
>dbj|AK111508.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001F05, full
insert sequence
Length = 2639
Score = 107 bits (54), Expect = 1e-020
Identities = 108/126 (85%)
Strand = Plus / Plus
Query: 192 ccttgaggggaccgtcttcacattctcagacacaaggaacaagttcacagctctgggttg 251
||||||||||||| ||||| |||||||| ||||| ||||| || ||||||||||||||
Sbjct: 464 ccttgaggggaccaatttcacgttctcagatacaagaaacaaatttacagctctgggttg 523
Query: 252 taacgtggtggccatgcttttgaatggcagcacggggtatagcggtggctgtgcttcctt 311
| | |||| |||||||| ||||| || |||| ||||||||||||||||||||||| ||
Sbjct: 524 tgatatggtagccatgctattgaacggtagcagcgggtatagcggtggctgtgcttcttt 583
Query: 312 ttgctc 317
||||||
Sbjct: 584 ttgctc 589
Score = 99.6 bits (50), Expect = 3e-018
Identities = 98/114 (85%)
Strand = Plus / Plus
Query: 632 cctactgctacaactcatcaaacggaatcggttaccgctgcaattgctccagtggattcg 691
|||||||||| ||||||||||| ||||| || |||||||||||||||||| ||| ||
Sbjct: 910 cctactgctataactcatcaaatggaattggataccgctgcaattgctcccttgggtttc 969
Query: 692 aggggaacccatacctgcaagggccaaatggatgcacagatattaatgaatgca 745
|||||||||| ||| |||||||||| |||||||| ||||||| |||||||||
Sbjct: 970 aggggaacccttacttgcaagggcccgatggatgccaagatattgatgaatgca 1023
Score = 89.7 bits (45), Expect = 3e-015
Identities = 138/169 (81%)
Strand = Plus / Plus
Query: 799 tgcacgtgcccagcagggatgagcggcgacggcctcaaggaaggaagtggttgcaatgga 858
|||| |||||||||||||||||| || || ||| | ||||| || ||||| |||||||||
Sbjct: 1077 tgcatgtgcccagcagggatgagaggtgatggcttgaaggagggcagtggctgcaatgga 1136
Query: 859 gtaagcacactagtgattgcaatagttgcaggattagctctgctagtgcttctcctcatc 918
| ||||||| |||||| ||||||| | ||| ||||||||||| |||||||||| |
Sbjct: 1137 attggcacactgttgattggaatagttactggactagctctgctactgcttctccttgtt 1196
Query: 919 cttggcttctggactcactggcttggtaagaagaggaaacttgcaaaga 967
|| |||||||| || ||||||| ||||||||| |||||||| ||||
Sbjct: 1197 ctcatattctggacccattggcttgttaagaagagaaaacttgcgaaga 1245
Score = 81.8 bits (41), Expect = 6e-013
Identities = 68/77 (88%)
Strand = Plus / Plus
Query: 87 catgcttgggattcttgacatctcgttgcttgatggtcttgtgagcatattggctagtgc 146
|||| ||||||||||| ||||||||||||| |||||| |||| ||||| ||||| |||||
Sbjct: 368 catgtttgggattcttaacatctcgttgctggatggttttgtaagcatcttggccagtgc 427
Query: 147 tagttctcagcagtgca 163
| ||||||||||||||
Sbjct: 428 cacttctcagcagtgca 444
Score = 54.0 bits (27), Expect = 1e-004
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 346 tgctctggggtggcttgctgccaagcgccggttcccaaagggctaaagaagctggactta 405
|||||||| ||||||||||||||||| || || || || ||| |||||||||| || ||
Sbjct: 618 tgctctggcgtggcttgctgccaagcaccagtaccgaaggggttaaagaagcttgagttg 677
Query: 406 gagttca 412
|||||||
Sbjct: 678 gagttca 684
>dbj|AK111662.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013153M19, full
insert sequence
Length = 3701
Score = 107 bits (54), Expect = 1e-020
Identities = 108/126 (85%)
Strand = Plus / Plus
Query: 192 ccttgaggggaccgtcttcacattctcagacacaaggaacaagttcacagctctgggttg 251
||||||||||||| ||||| |||||||| ||||| ||||| || ||||||||||||||
Sbjct: 1286 ccttgaggggaccaatttcacgttctcagatacaagaaacaaatttacagctctgggttg 1345
Query: 252 taacgtggtggccatgcttttgaatggcagcacggggtatagcggtggctgtgcttcctt 311
| | |||| |||||||| ||||| || |||| ||||||||||||||||||||||| ||
Sbjct: 1346 tgatatggtagccatgctattgaacggtagcagcgggtatagcggtggctgtgcttcttt 1405
Query: 312 ttgctc 317
||||||
Sbjct: 1406 ttgctc 1411
Score = 85.7 bits (43), Expect = 4e-014
Identities = 82/95 (86%)
Strand = Plus / Plus
Query: 632 cctactgctacaactcatcaaacggaatcggttaccgctgcaattgctccagtggattcg 691
|||||||||| ||||||||||| ||||| || |||||||||||||||||| ||| ||
Sbjct: 1732 cctactgctataactcatcaaatggaattggataccgctgcaattgctcccttgggtttc 1791
Query: 692 aggggaacccatacctgcaagggccaaatggatgc 726
|||||||||| ||| |||||||||| ||||||||
Sbjct: 1792 aggggaacccttacttgcaagggcccgatggatgc 1826
Score = 81.8 bits (41), Expect = 6e-013
Identities = 68/77 (88%)
Strand = Plus / Plus
Query: 87 catgcttgggattcttgacatctcgttgcttgatggtcttgtgagcatattggctagtgc 146
|||| ||||||||||| ||||||||||||| |||||| |||| ||||| ||||| |||||
Sbjct: 1190 catgtttgggattcttaacatctcgttgctggatggttttgtaagcatcttggccagtgc 1249
Query: 147 tagttctcagcagtgca 163
| ||||||||||||||
Sbjct: 1250 cacttctcagcagtgca 1266
Score = 50.1 bits (25), Expect = 0.002
Identities = 70/85 (82%)
Strand = Plus / Plus
Query: 799 tgcacgtgcccagcagggatgagcggcgacggcctcaaggaaggaagtggttgcaatgga 858
|||| |||||||||||||||||| || || ||| | ||||| || ||||| |||||||||
Sbjct: 2009 tgcatgtgcccagcagggatgagaggtgatggcttgaaggagggcagtggctgcaatgga 2068
Query: 859 gtaagcacactagtgattgcaatag 883
| ||||||| |||||| |||||
Sbjct: 2069 attggcacactgttgattggaatag 2093
Score = 46.1 bits (23), Expect = 0.036
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 346 tgctctggggtggcttgctgccaagcgccggttcccaaagggctaaagaagctggactta 405
|||||||| ||||||||||||||||| || || || || ||| ||| |||||| || ||
Sbjct: 1440 tgctctggcgtggcttgctgccaagcaccagtaccgaaggggttaatgaagcttgagttg 1499
Query: 406 gagttca 412
|||||||
Sbjct: 1500 gagttca 1506
>gb|AACV01010425.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010425, whole
genome shotgun sequence
Length = 81545
Score = 107 bits (54), Expect = 1e-020
Identities = 108/126 (85%)
Strand = Plus / Minus
Query: 192 ccttgaggggaccgtcttcacattctcagacacaaggaacaagttcacagctctgggttg 251
||||||||||||| ||||| |||||||| ||||| ||||| || ||||||||||||||
Sbjct: 14687 ccttgaggggaccaatttcacgttctcagatacaagaaacaaatttacagctctgggttg 14628
Query: 252 taacgtggtggccatgcttttgaatggcagcacggggtatagcggtggctgtgcttcctt 311
| | |||| |||||||| ||||| || |||| ||||||||||||||||||||||| ||
Sbjct: 14627 tgatatggtagccatgctattgaacggtagcagcgggtatagcggtggctgtgcttcttt 14568
Query: 312 ttgctc 317
||||||
Sbjct: 14567 ttgctc 14562
Score = 85.7 bits (43), Expect = 4e-014
Identities = 82/95 (86%)
Strand = Plus / Minus
Query: 632 cctactgctacaactcatcaaacggaatcggttaccgctgcaattgctccagtggattcg 691
|||||||||| ||||||||||| ||||| || |||||||||||||||||| ||| ||
Sbjct: 14241 cctactgctataactcatcaaatggaattggataccgctgcaattgctcccttgggtttc 14182
Query: 692 aggggaacccatacctgcaagggccaaatggatgc 726
|||||||||| ||| |||||||||| ||||||||
Sbjct: 14181 aggggaacccttacttgcaagggcccgatggatgc 14147
Score = 81.8 bits (41), Expect = 6e-013
Identities = 68/77 (88%)
Strand = Plus / Minus
Query: 87 catgcttgggattcttgacatctcgttgcttgatggtcttgtgagcatattggctagtgc 146
|||| ||||||||||| ||||||||||||| |||||| |||| ||||| ||||| |||||
Sbjct: 14783 catgtttgggattcttaacatctcgttgctggatggttttgtaagcatcttggccagtgc 14724
Query: 147 tagttctcagcagtgca 163
| ||||||||||||||
Sbjct: 14723 cacttctcagcagtgca 14707
Score = 54.0 bits (27), Expect = 1e-004
Identities = 57/67 (85%)
Strand = Plus / Minus
Query: 346 tgctctggggtggcttgctgccaagcgccggttcccaaagggctaaagaagctggactta 405
|||||||| ||||||||||||||||| || || || || ||| |||||||||| || ||
Sbjct: 14533 tgctctggcgtggcttgctgccaagcaccagtaccgaaggggttaaagaagcttgagttg 14474
Query: 406 gagttca 412
|||||||
Sbjct: 14473 gagttca 14467
Score = 50.1 bits (25), Expect = 0.002
Identities = 70/85 (82%)
Strand = Plus / Minus
Query: 799 tgcacgtgcccagcagggatgagcggcgacggcctcaaggaaggaagtggttgcaatgga 858
|||| |||||||||||||||||| || || ||| | ||||| || ||||| |||||||||
Sbjct: 13964 tgcatgtgcccagcagggatgagaggtgatggcttgaaggagggcagtggctgcaatgga 13905
Query: 859 gtaagcacactagtgattgcaatag 883
| ||||||| |||||| |||||
Sbjct: 13904 attggcacactgttgattggaatag 13880
>ref|XM_462692.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1986
Score = 107 bits (54), Expect = 1e-020
Identities = 108/126 (85%)
Strand = Plus / Plus
Query: 192 ccttgaggggaccgtcttcacattctcagacacaaggaacaagttcacagctctgggttg 251
||||||||||||| ||||| |||||||| ||||| ||||| || ||||||||||||||
Sbjct: 312 ccttgaggggaccaatttcacgttctcagatacaagaaacaaatttacagctctgggttg 371
Query: 252 taacgtggtggccatgcttttgaatggcagcacggggtatagcggtggctgtgcttcctt 311
| | |||| |||||||| ||||| || |||| ||||||||||||||||||||||| ||
Sbjct: 372 tgatatggtagccatgctattgaacggtagcagcgggtatagcggtggctgtgcttcttt 431
Query: 312 ttgctc 317
||||||
Sbjct: 432 ttgctc 437
Score = 85.7 bits (43), Expect = 4e-014
Identities = 82/95 (86%)
Strand = Plus / Plus
Query: 632 cctactgctacaactcatcaaacggaatcggttaccgctgcaattgctccagtggattcg 691
|||||||||| ||||||||||| ||||| || |||||||||||||||||| ||| ||
Sbjct: 758 cctactgctataactcatcaaatggaattggataccgctgcaattgctcccttgggtttc 817
Query: 692 aggggaacccatacctgcaagggccaaatggatgc 726
|||||||||| ||| |||||||||| ||||||||
Sbjct: 818 aggggaacccttacttgcaagggcccgatggatgc 852
Score = 81.8 bits (41), Expect = 6e-013
Identities = 68/77 (88%)
Strand = Plus / Plus
Query: 87 catgcttgggattcttgacatctcgttgcttgatggtcttgtgagcatattggctagtgc 146
|||| ||||||||||| ||||||||||||| |||||| |||| ||||| ||||| |||||
Sbjct: 216 catgtttgggattcttaacatctcgttgctggatggttttgtaagcatcttggccagtgc 275
Query: 147 tagttctcagcagtgca 163
| ||||||||||||||
Sbjct: 276 cacttctcagcagtgca 292
Score = 54.0 bits (27), Expect = 1e-004
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 346 tgctctggggtggcttgctgccaagcgccggttcccaaagggctaaagaagctggactta 405
|||||||| ||||||||||||||||| || || || || ||| |||||||||| || ||
Sbjct: 466 tgctctggcgtggcttgctgccaagcaccagtaccgaaggggttaaagaagcttgagttg 525
Query: 406 gagttca 412
|||||||
Sbjct: 526 gagttca 532
>ref|XM_473747.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1986
Score = 107 bits (54), Expect = 1e-020
Identities = 108/126 (85%)
Strand = Plus / Plus
Query: 192 ccttgaggggaccgtcttcacattctcagacacaaggaacaagttcacagctctgggttg 251
||||||||||||| ||||| |||||||| ||||| ||||| || ||||||||||||||
Sbjct: 312 ccttgaggggaccaatttcacgttctcagatacaagaaacaaatttacagctctgggttg 371
Query: 252 taacgtggtggccatgcttttgaatggcagcacggggtatagcggtggctgtgcttcctt 311
| | |||| |||||||| ||||| || |||| ||||||||||||||||||||||| ||
Sbjct: 372 tgatatggtagccatgctattgaacggtagcagcgggtatagcggtggctgtgcttcttt 431
Query: 312 ttgctc 317
||||||
Sbjct: 432 ttgctc 437
Score = 85.7 bits (43), Expect = 4e-014
Identities = 82/95 (86%)
Strand = Plus / Plus
Query: 632 cctactgctacaactcatcaaacggaatcggttaccgctgcaattgctccagtggattcg 691
|||||||||| ||||||||||| ||||| || |||||||||||||||||| ||| ||
Sbjct: 758 cctactgctataactcatcaaatggaattggataccgctgcaattgctcccttgggtttc 817
Query: 692 aggggaacccatacctgcaagggccaaatggatgc 726
|||||||||| ||| |||||||||| ||||||||
Sbjct: 818 aggggaacccttacttgcaagggcccgatggatgc 852
Score = 81.8 bits (41), Expect = 6e-013
Identities = 68/77 (88%)
Strand = Plus / Plus
Query: 87 catgcttgggattcttgacatctcgttgcttgatggtcttgtgagcatattggctagtgc 146
|||| ||||||||||| ||||||||||||| |||||| |||| ||||| ||||| |||||
Sbjct: 216 catgtttgggattcttaacatctcgttgctggatggttttgtaagcatcttggccagtgc 275
Query: 147 tagttctcagcagtgca 163
| ||||||||||||||
Sbjct: 276 cacttctcagcagtgca 292
Score = 54.0 bits (27), Expect = 1e-004
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 346 tgctctggggtggcttgctgccaagcgccggttcccaaagggctaaagaagctggactta 405
|||||||| ||||||||||||||||| || || || || ||| |||||||||| || ||
Sbjct: 466 tgctctggcgtggcttgctgccaagcaccagtaccgaaggggttaaagaagcttgagttg 525
Query: 406 gagttca 412
|||||||
Sbjct: 526 gagttca 532
>ref|NT_079866.2| Oryza sativa (japonica cultivar-group)
Length = 1075015
Score = 107 bits (54), Expect = 1e-020
Identities = 108/126 (85%)
Strand = Plus / Minus
Query: 192 ccttgaggggaccgtcttcacattctcagacacaaggaacaagttcacagctctgggttg 251
||||||||||||| ||||| |||||||| ||||| ||||| || ||||||||||||||
Sbjct: 153236 ccttgaggggaccaatttcacgttctcagatacaagaaacaaatttacagctctgggttg 153177
Query: 252 taacgtggtggccatgcttttgaatggcagcacggggtatagcggtggctgtgcttcctt 311
| | |||| |||||||| ||||| || |||| ||||||||||||||||||||||| ||
Sbjct: 153176 tgatatggtagccatgctattgaacggtagcagcgggtatagcggtggctgtgcttcttt 153117
Query: 312 ttgctc 317
||||||
Sbjct: 153116 ttgctc 153111
Score = 85.7 bits (43), Expect = 4e-014
Identities = 82/95 (86%)
Strand = Plus / Minus
Query: 632 cctactgctacaactcatcaaacggaatcggttaccgctgcaattgctccagtggattcg 691
|||||||||| ||||||||||| ||||| || |||||||||||||||||| ||| ||
Sbjct: 152790 cctactgctataactcatcaaatggaattggataccgctgcaattgctcccttgggtttc 152731
Query: 692 aggggaacccatacctgcaagggccaaatggatgc 726
|||||||||| ||| |||||||||| ||||||||
Sbjct: 152730 aggggaacccttacttgcaagggcccgatggatgc 152696
Score = 81.8 bits (41), Expect = 6e-013
Identities = 68/77 (88%)
Strand = Plus / Minus
Query: 87 catgcttgggattcttgacatctcgttgcttgatggtcttgtgagcatattggctagtgc 146
|||| ||||||||||| ||||||||||||| |||||| |||| ||||| ||||| |||||
Sbjct: 153332 catgtttgggattcttaacatctcgttgctggatggttttgtaagcatcttggccagtgc 153273
Query: 147 tagttctcagcagtgca 163
| ||||||||||||||
Sbjct: 153272 cacttctcagcagtgca 153256
Score = 54.0 bits (27), Expect = 1e-004
Identities = 57/67 (85%)
Strand = Plus / Minus
Query: 346 tgctctggggtggcttgctgccaagcgccggttcccaaagggctaaagaagctggactta 405
|||||||| ||||||||||||||||| || || || || ||| |||||||||| || ||
Sbjct: 153082 tgctctggcgtggcttgctgccaagcaccagtaccgaaggggttaaagaagcttgagttg 153023
Query: 406 gagttca 412
|||||||
Sbjct: 153022 gagttca 153016
Score = 50.1 bits (25), Expect = 0.002
Identities = 70/85 (82%)
Strand = Plus / Minus
Query: 799 tgcacgtgcccagcagggatgagcggcgacggcctcaaggaaggaagtggttgcaatgga 858
|||| |||||||||||||||||| || || ||| | ||||| || ||||| |||||||||
Sbjct: 152513 tgcatgtgcccagcagggatgagaggtgatggcttgaaggagggcagtggctgcaatgga 152454
Query: 859 gtaagcacactagtgattgcaatag 883
| ||||||| |||||| |||||
Sbjct: 152453 attggcacactgttgattggaatag 152429
>ref|NT_107105.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0093F12,
complete sequence
Length = 186339
Score = 107 bits (54), Expect = 1e-020
Identities = 108/126 (85%)
Strand = Plus / Minus
Query: 192 ccttgaggggaccgtcttcacattctcagacacaaggaacaagttcacagctctgggttg 251
||||||||||||| ||||| |||||||| ||||| ||||| || ||||||||||||||
Sbjct: 153236 ccttgaggggaccaatttcacgttctcagatacaagaaacaaatttacagctctgggttg 153177
Query: 252 taacgtggtggccatgcttttgaatggcagcacggggtatagcggtggctgtgcttcctt 311
| | |||| |||||||| ||||| || |||| ||||||||||||||||||||||| ||
Sbjct: 153176 tgatatggtagccatgctattgaacggtagcagcgggtatagcggtggctgtgcttcttt 153117
Query: 312 ttgctc 317
||||||
Sbjct: 153116 ttgctc 153111
Score = 85.7 bits (43), Expect = 4e-014
Identities = 82/95 (86%)
Strand = Plus / Minus
Query: 632 cctactgctacaactcatcaaacggaatcggttaccgctgcaattgctccagtggattcg 691
|||||||||| ||||||||||| ||||| || |||||||||||||||||| ||| ||
Sbjct: 152790 cctactgctataactcatcaaatggaattggataccgctgcaattgctcccttgggtttc 152731
Query: 692 aggggaacccatacctgcaagggccaaatggatgc 726
|||||||||| ||| |||||||||| ||||||||
Sbjct: 152730 aggggaacccttacttgcaagggcccgatggatgc 152696
Score = 81.8 bits (41), Expect = 6e-013
Identities = 68/77 (88%)
Strand = Plus / Minus
Query: 87 catgcttgggattcttgacatctcgttgcttgatggtcttgtgagcatattggctagtgc 146
|||| ||||||||||| ||||||||||||| |||||| |||| ||||| ||||| |||||
Sbjct: 153332 catgtttgggattcttaacatctcgttgctggatggttttgtaagcatcttggccagtgc 153273
Query: 147 tagttctcagcagtgca 163
| ||||||||||||||
Sbjct: 153272 cacttctcagcagtgca 153256
Score = 54.0 bits (27), Expect = 1e-004
Identities = 57/67 (85%)
Strand = Plus / Minus
Query: 346 tgctctggggtggcttgctgccaagcgccggttcccaaagggctaaagaagctggactta 405
|||||||| ||||||||||||||||| || || || || ||| |||||||||| || ||
Sbjct: 153082 tgctctggcgtggcttgctgccaagcaccagtaccgaaggggttaaagaagcttgagttg 153023
Query: 406 gagttca 412
|||||||
Sbjct: 153022 gagttca 153016
Score = 50.1 bits (25), Expect = 0.002
Identities = 70/85 (82%)
Strand = Plus / Minus
Query: 799 tgcacgtgcccagcagggatgagcggcgacggcctcaaggaaggaagtggttgcaatgga 858
|||| |||||||||||||||||| || || ||| | ||||| || ||||| |||||||||
Sbjct: 152513 tgcatgtgcccagcagggatgagaggtgatggcttgaaggagggcagtggctgcaatgga 152454
Query: 859 gtaagcacactagtgattgcaatag 883
| ||||||| |||||| |||||
Sbjct: 152453 attggcacactgttgattggaatag 152429
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 107 bits (54), Expect = 1e-020
Identities = 108/126 (85%)
Strand = Plus / Minus
Query: 192 ccttgaggggaccgtcttcacattctcagacacaaggaacaagttcacagctctgggttg 251
||||||||||||| ||||| |||||||| ||||| ||||| || ||||||||||||||
Sbjct: 7977840 ccttgaggggaccaatttcacgttctcagatacaagaaacaaatttacagctctgggttg 7977781
Query: 252 taacgtggtggccatgcttttgaatggcagcacggggtatagcggtggctgtgcttcctt 311
| | |||| |||||||| ||||| || |||| ||||||||||||||||||||||| ||
Sbjct: 7977780 tgatatggtagccatgctattgaacggtagcagcgggtatagcggtggctgtgcttcttt 7977721
Query: 312 ttgctc 317
||||||
Sbjct: 7977720 ttgctc 7977715
Score = 85.7 bits (43), Expect = 4e-014
Identities = 82/95 (86%)
Strand = Plus / Minus
Query: 632 cctactgctacaactcatcaaacggaatcggttaccgctgcaattgctccagtggattcg 691
|||||||||| ||||||||||| ||||| || |||||||||||||||||| ||| ||
Sbjct: 7977394 cctactgctataactcatcaaatggaattggataccgctgcaattgctcccttgggtttc 7977335
Query: 692 aggggaacccatacctgcaagggccaaatggatgc 726
|||||||||| ||| |||||||||| ||||||||
Sbjct: 7977334 aggggaacccttacttgcaagggcccgatggatgc 7977300
Score = 81.8 bits (41), Expect = 6e-013
Identities = 68/77 (88%)
Strand = Plus / Minus
Query: 87 catgcttgggattcttgacatctcgttgcttgatggtcttgtgagcatattggctagtgc 146
|||| ||||||||||| ||||||||||||| |||||| |||| ||||| ||||| |||||
Sbjct: 7977936 catgtttgggattcttaacatctcgttgctggatggttttgtaagcatcttggccagtgc 7977877
Query: 147 tagttctcagcagtgca 163
| ||||||||||||||
Sbjct: 7977876 cacttctcagcagtgca 7977860
Score = 54.0 bits (27), Expect = 1e-004
Identities = 57/67 (85%)
Strand = Plus / Minus
Query: 346 tgctctggggtggcttgctgccaagcgccggttcccaaagggctaaagaagctggactta 405
|||||||| ||||||||||||||||| || || || || ||| |||||||||| || ||
Sbjct: 7977686 tgctctggcgtggcttgctgccaagcaccagtaccgaaggggttaaagaagcttgagttg 7977627
Query: 406 gagttca 412
|||||||
Sbjct: 7977626 gagttca 7977620
Score = 50.1 bits (25), Expect = 0.002
Identities = 70/85 (82%)
Strand = Plus / Minus
Query: 799 tgcacgtgcccagcagggatgagcggcgacggcctcaaggaaggaagtggttgcaatgga 858
|||| |||||||||||||||||| || || ||| | ||||| || ||||| |||||||||
Sbjct: 7977117 tgcatgtgcccagcagggatgagaggtgatggcttgaaggagggcagtggctgcaatgga 7977058
Query: 859 gtaagcacactagtgattgcaatag 883
| ||||||| |||||| |||||
Sbjct: 7977057 attggcacactgttgattggaatag 7977033
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 107 bits (54), Expect = 1e-020
Identities = 108/126 (85%)
Strand = Plus / Minus
Query: 192 ccttgaggggaccgtcttcacattctcagacacaaggaacaagttcacagctctgggttg 251
||||||||||||| ||||| |||||||| ||||| ||||| || ||||||||||||||
Sbjct: 27121939 ccttgaggggaccaatttcacgttctcagatacaagaaacaaatttacagctctgggttg 27121880
Query: 252 taacgtggtggccatgcttttgaatggcagcacggggtatagcggtggctgtgcttcctt 311
| | |||| |||||||| ||||| || |||| ||||||||||||||||||||||| ||
Sbjct: 27121879 tgatatggtagccatgctattgaacggtagcagcgggtatagcggtggctgtgcttcttt 27121820
Query: 312 ttgctc 317
||||||
Sbjct: 27121819 ttgctc 27121814
Score = 85.7 bits (43), Expect = 4e-014
Identities = 82/95 (86%)
Strand = Plus / Minus
Query: 632 cctactgctacaactcatcaaacggaatcggttaccgctgcaattgctccagtggattcg 691
|||||||||| ||||||||||| ||||| || |||||||||||||||||| ||| ||
Sbjct: 27121493 cctactgctataactcatcaaatggaattggataccgctgcaattgctcccttgggtttc 27121434
Query: 692 aggggaacccatacctgcaagggccaaatggatgc 726
|||||||||| ||| |||||||||| ||||||||
Sbjct: 27121433 aggggaacccttacttgcaagggcccgatggatgc 27121399
Score = 81.8 bits (41), Expect = 6e-013
Identities = 68/77 (88%)
Strand = Plus / Minus
Query: 87 catgcttgggattcttgacatctcgttgcttgatggtcttgtgagcatattggctagtgc 146
|||| ||||||||||| ||||||||||||| |||||| |||| ||||| ||||| |||||
Sbjct: 27122035 catgtttgggattcttaacatctcgttgctggatggttttgtaagcatcttggccagtgc 27121976
Query: 147 tagttctcagcagtgca 163
| ||||||||||||||
Sbjct: 27121975 cacttctcagcagtgca 27121959
Score = 54.0 bits (27), Expect = 1e-004
Identities = 57/67 (85%)
Strand = Plus / Minus
Query: 346 tgctctggggtggcttgctgccaagcgccggttcccaaagggctaaagaagctggactta 405
|||||||| ||||||||||||||||| || || || || ||| |||||||||| || ||
Sbjct: 27121785 tgctctggcgtggcttgctgccaagcaccagtaccgaaggggttaaagaagcttgagttg 27121726
Query: 406 gagttca 412
|||||||
Sbjct: 27121725 gagttca 27121719
Score = 50.1 bits (25), Expect = 0.002
Identities = 70/85 (82%)
Strand = Plus / Minus
Query: 799 tgcacgtgcccagcagggatgagcggcgacggcctcaaggaaggaagtggttgcaatgga 858
|||| |||||||||||||||||| || || ||| | ||||| || ||||| |||||||||
Sbjct: 27121216 tgcatgtgcccagcagggatgagaggtgatggcttgaaggagggcagtggctgcaatgga 27121157
Query: 859 gtaagcacactagtgattgcaatag 883
| ||||||| |||||| |||||
Sbjct: 27121156 attggcacactgttgattggaatag 27121132
>emb|AL606683.3|OSJN00089 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0083N12,
complete sequence
Length = 160989
Score = 107 bits (54), Expect = 1e-020
Identities = 108/126 (85%)
Strand = Plus / Minus
Query: 192 ccttgaggggaccgtcttcacattctcagacacaaggaacaagttcacagctctgggttg 251
||||||||||||| ||||| |||||||| ||||| ||||| || ||||||||||||||
Sbjct: 6621 ccttgaggggaccaatttcacgttctcagatacaagaaacaaatttacagctctgggttg 6562
Query: 252 taacgtggtggccatgcttttgaatggcagcacggggtatagcggtggctgtgcttcctt 311
| | |||| |||||||| ||||| || |||| ||||||||||||||||||||||| ||
Sbjct: 6561 tgatatggtagccatgctattgaacggtagcagcgggtatagcggtggctgtgcttcttt 6502
Query: 312 ttgctc 317
||||||
Sbjct: 6501 ttgctc 6496
Score = 85.7 bits (43), Expect = 4e-014
Identities = 82/95 (86%)
Strand = Plus / Minus
Query: 632 cctactgctacaactcatcaaacggaatcggttaccgctgcaattgctccagtggattcg 691
|||||||||| ||||||||||| ||||| || |||||||||||||||||| ||| ||
Sbjct: 6175 cctactgctataactcatcaaatggaattggataccgctgcaattgctcccttgggtttc 6116
Query: 692 aggggaacccatacctgcaagggccaaatggatgc 726
|||||||||| ||| |||||||||| ||||||||
Sbjct: 6115 aggggaacccttacttgcaagggcccgatggatgc 6081
Score = 81.8 bits (41), Expect = 6e-013
Identities = 68/77 (88%)
Strand = Plus / Minus
Query: 87 catgcttgggattcttgacatctcgttgcttgatggtcttgtgagcatattggctagtgc 146
|||| ||||||||||| ||||||||||||| |||||| |||| ||||| ||||| |||||
Sbjct: 6717 catgtttgggattcttaacatctcgttgctggatggttttgtaagcatcttggccagtgc 6658
Query: 147 tagttctcagcagtgca 163
| ||||||||||||||
Sbjct: 6657 cacttctcagcagtgca 6641
Score = 54.0 bits (27), Expect = 1e-004
Identities = 57/67 (85%)
Strand = Plus / Minus
Query: 346 tgctctggggtggcttgctgccaagcgccggttcccaaagggctaaagaagctggactta 405
|||||||| ||||||||||||||||| || || || || ||| |||||||||| || ||
Sbjct: 6467 tgctctggcgtggcttgctgccaagcaccagtaccgaaggggttaaagaagcttgagttg 6408
Query: 406 gagttca 412
|||||||
Sbjct: 6407 gagttca 6401
Score = 50.1 bits (25), Expect = 0.002
Identities = 70/85 (82%)
Strand = Plus / Minus
Query: 799 tgcacgtgcccagcagggatgagcggcgacggcctcaaggaaggaagtggttgcaatgga 858
|||| |||||||||||||||||| || || ||| | ||||| || ||||| |||||||||
Sbjct: 5898 tgcatgtgcccagcagggatgagaggtgatggcttgaaggagggcagtggctgcaatgga 5839
Query: 859 gtaagcacactagtgattgcaatag 883
| ||||||| |||||| |||||
Sbjct: 5838 attggcacactgttgattggaatag 5814
>emb|AL607004.4|OSJN00129 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNba0093F12,
complete sequence
Length = 186142
Score = 107 bits (54), Expect = 1e-020
Identities = 108/126 (85%)
Strand = Plus / Minus
Query: 192 ccttgaggggaccgtcttcacattctcagacacaaggaacaagttcacagctctgggttg 251
||||||||||||| ||||| |||||||| ||||| ||||| || ||||||||||||||
Sbjct: 153019 ccttgaggggaccaatttcacgttctcagatacaagaaacaaatttacagctctgggttg 152960
Query: 252 taacgtggtggccatgcttttgaatggcagcacggggtatagcggtggctgtgcttcctt 311
| | |||| |||||||| ||||| || |||| ||||||||||||||||||||||| ||
Sbjct: 152959 tgatatggtagccatgctattgaacggtagcagcgggtatagcggtggctgtgcttcttt 152900
Query: 312 ttgctc 317
||||||
Sbjct: 152899 ttgctc 152894
Score = 85.7 bits (43), Expect = 4e-014
Identities = 82/95 (86%)
Strand = Plus / Minus
Query: 632 cctactgctacaactcatcaaacggaatcggttaccgctgcaattgctccagtggattcg 691
|||||||||| ||||||||||| ||||| || |||||||||||||||||| ||| ||
Sbjct: 152573 cctactgctataactcatcaaatggaattggataccgctgcaattgctcccttgggtttc 152514
Query: 692 aggggaacccatacctgcaagggccaaatggatgc 726
|||||||||| ||| |||||||||| ||||||||
Sbjct: 152513 aggggaacccttacttgcaagggcccgatggatgc 152479
Score = 81.8 bits (41), Expect = 6e-013
Identities = 68/77 (88%)
Strand = Plus / Minus
Query: 87 catgcttgggattcttgacatctcgttgcttgatggtcttgtgagcatattggctagtgc 146
|||| ||||||||||| ||||||||||||| |||||| |||| ||||| ||||| |||||
Sbjct: 153115 catgtttgggattcttaacatctcgttgctggatggttttgtaagcatcttggccagtgc 153056
Query: 147 tagttctcagcagtgca 163
| ||||||||||||||
Sbjct: 153055 cacttctcagcagtgca 153039
Score = 54.0 bits (27), Expect = 1e-004
Identities = 57/67 (85%)
Strand = Plus / Minus
Query: 346 tgctctggggtggcttgctgccaagcgccggttcccaaagggctaaagaagctggactta 405
|||||||| ||||||||||||||||| || || || || ||| |||||||||| || ||
Sbjct: 152865 tgctctggcgtggcttgctgccaagcaccagtaccgaaggggttaaagaagcttgagttg 152806
Query: 406 gagttca 412
|||||||
Sbjct: 152805 gagttca 152799
Score = 50.1 bits (25), Expect = 0.002
Identities = 70/85 (82%)
Strand = Plus / Minus
Query: 799 tgcacgtgcccagcagggatgagcggcgacggcctcaaggaaggaagtggttgcaatgga 858
|||| |||||||||||||||||| || || ||| | ||||| || ||||| |||||||||
Sbjct: 152296 tgcatgtgcccagcagggatgagaggtgatggcttgaaggagggcagtggctgcaatgga 152237
Query: 859 gtaagcacactagtgattgcaatag 883
| ||||||| |||||| |||||
Sbjct: 152236 attggcacactgttgattggaatag 152212
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 107 bits (54), Expect = 1e-020
Identities = 108/126 (85%)
Strand = Plus / Minus
Query: 192 ccttgaggggaccgtcttcacattctcagacacaaggaacaagttcacagctctgggttg 251
||||||||||||| ||||| |||||||| ||||| ||||| || ||||||||||||||
Sbjct: 30256725 ccttgaggggaccaatttcacgttctcagatacaagaaacaaatttacagctctgggttg 30256666
Query: 252 taacgtggtggccatgcttttgaatggcagcacggggtatagcggtggctgtgcttcctt 311
| | |||| |||||||| ||||| || |||| ||||||||||||||||||||||| ||
Sbjct: 30256665 tgatatggtagccatgctattgaacggtagcagcgggtatagcggtggctgtgcttcttt 30256606
Query: 312 ttgctc 317
||||||
Sbjct: 30256605 ttgctc 30256600
Score = 85.7 bits (43), Expect = 4e-014
Identities = 82/95 (86%)
Strand = Plus / Minus
Query: 632 cctactgctacaactcatcaaacggaatcggttaccgctgcaattgctccagtggattcg 691
|||||||||| ||||||||||| ||||| || |||||||||||||||||| ||| ||
Sbjct: 30256279 cctactgctataactcatcaaatggaattggataccgctgcaattgctcccttgggtttc 30256220
Query: 692 aggggaacccatacctgcaagggccaaatggatgc 726
|||||||||| ||| |||||||||| ||||||||
Sbjct: 30256219 aggggaacccttacttgcaagggcccgatggatgc 30256185
Score = 81.8 bits (41), Expect = 6e-013
Identities = 68/77 (88%)
Strand = Plus / Minus
Query: 87 catgcttgggattcttgacatctcgttgcttgatggtcttgtgagcatattggctagtgc 146
|||| ||||||||||| ||||||||||||| |||||| |||| ||||| ||||| |||||
Sbjct: 30256821 catgtttgggattcttaacatctcgttgctggatggttttgtaagcatcttggccagtgc 30256762
Query: 147 tagttctcagcagtgca 163
| ||||||||||||||
Sbjct: 30256761 cacttctcagcagtgca 30256745
Score = 54.0 bits (27), Expect = 1e-004
Identities = 57/67 (85%)
Strand = Plus / Minus
Query: 346 tgctctggggtggcttgctgccaagcgccggttcccaaagggctaaagaagctggactta 405
|||||||| ||||||||||||||||| || || || || ||| |||||||||| || ||
Sbjct: 30256571 tgctctggcgtggcttgctgccaagcaccagtaccgaaggggttaaagaagcttgagttg 30256512
Query: 406 gagttca 412
|||||||
Sbjct: 30256511 gagttca 30256505
Score = 50.1 bits (25), Expect = 0.002
Identities = 70/85 (82%)
Strand = Plus / Minus
Query: 799 tgcacgtgcccagcagggatgagcggcgacggcctcaaggaaggaagtggttgcaatgga 858
|||| |||||||||||||||||| || || ||| | ||||| || ||||| |||||||||
Sbjct: 30256002 tgcatgtgcccagcagggatgagaggtgatggcttgaaggagggcagtggctgcaatgga 30255943
Query: 859 gtaagcacactagtgattgcaatag 883
| ||||||| |||||| |||||
Sbjct: 30255942 attggcacactgttgattggaatag 30255918
>dbj|AG022107.1| Oryza sativa (japonica cultivar-group) DNA, clone:NC0462_0_405_1A,
3' flanking sequence of Tos17 insertion in rice strain
NC0462, genomic survey sequence
Length = 388
Score = 87.7 bits (44), Expect = 1e-014
Identities = 93/110 (84%)
Strand = Plus / Plus
Query: 208 ttcacattctcagacacaaggaacaagttcacagctctgggttgtaacgtggtggccatg 267
||||| |||||||| ||||| |||| || ||||||||||||||| | |||| ||||||
Sbjct: 12 ttcacgttctcagatacaaganacaaatttacagctctgggttgtgatatggtagccatg 71
Query: 268 cttttgaatggcagcacggggtatagcggtggctgtgcttccttttgctc 317
|| |||| || |||| ||||||||||||||||||||||| ||||||||
Sbjct: 72 ctattgancggtagcagcgggtatagcggtggctgtgcttctttttgctc 121
Score = 44.1 bits (22), Expect = 0.14
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 346 tgctctggggtggcttgctgccaagc 371
|||||||| |||||||||||||||||
Sbjct: 150 tgctctggcgtggcttgctgccaagc 175
>ref|XM_483199.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2226
Score = 50.1 bits (25), Expect = 0.002
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 714 gccaaatggatgcacagatattaatgaatgcat 746
||||||||||||| ||||||||||||||||||
Sbjct: 903 gccaaatggatgccaagatattaatgaatgcat 935
>dbj|AP004064.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1520_C09
Length = 145553
Score = 48.1 bits (24), Expect = 0.009
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 664 taccgctgcaattgctccagtggattcgaggggaacccatacct 707
||||||||||| |||||||| || | |||||||||||| |||||
Sbjct: 41214 taccgctgcaactgctccaggggctacgaggggaacccctacct 41171
>gb|AACV01005617.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005617, whole
genome shotgun sequence
Length = 29110
Score = 48.1 bits (24), Expect = 0.009
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 664 taccgctgcaattgctccagtggattcgaggggaacccatacct 707
||||||||||| |||||||| || | |||||||||||| |||||
Sbjct: 10678 taccgctgcaactgctccaggggctacgaggggaacccctacct 10721
>ref|XM_468307.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2271
Score = 48.1 bits (24), Expect = 0.009
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 664 taccgctgcaattgctccagtggattcgaggggaacccatacct 707
||||||||||| |||||||| || | |||||||||||| |||||
Sbjct: 862 taccgctgcaactgctccaggggctacgaggggaacccctacct 905
>ref|NT_107182.1| Oryza sativa (japonica cultivar-group)
Length = 1785023
Score = 48.1 bits (24), Expect = 0.009
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 664 taccgctgcaattgctccagtggattcgaggggaacccatacct 707
||||||||||| |||||||| || | |||||||||||| |||||
Sbjct: 365547 taccgctgcaactgctccaggggctacgaggggaacccctacct 365504
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 48.1 bits (24), Expect = 0.009
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 664 taccgctgcaattgctccagtggattcgaggggaacccatacct 707
||||||||||| |||||||| || | |||||||||||| |||||
Sbjct: 21167396 taccgctgcaactgctccaggggctacgaggggaacccctacct 21167353
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 48.1 bits (24), Expect = 0.009
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 664 taccgctgcaattgctccagtggattcgaggggaacccatacct 707
||||||||||| |||||||| || | |||||||||||| |||||
Sbjct: 34620460 taccgctgcaactgctccaggggctacgaggggaacccctacct 34620417
Score = 38.2 bits (19), Expect = 8.7
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 702 atacctgcaagggccaaat 720
|||||||||||||||||||
Sbjct: 923097 atacctgcaagggccaaat 923079
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 48.1 bits (24), Expect = 0.009
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 664 taccgctgcaattgctccagtggattcgaggggaacccatacct 707
||||||||||| |||||||| || | |||||||||||| |||||
Sbjct: 34530274 taccgctgcaactgctccaggggctacgaggggaacccctacct 34530231
Score = 38.2 bits (19), Expect = 8.7
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 702 atacctgcaagggccaaat 720
|||||||||||||||||||
Sbjct: 907296 atacctgcaagggccaaat 907278
>gb|AACV01018806.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg018806, whole
genome shotgun sequence
Length = 82898
Score = 42.1 bits (21), Expect = 0.56
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 726 cacagatattaatgaatgcat 746
|||||||||||||||||||||
Sbjct: 29020 cacagatattaatgaatgcat 29040
>dbj|AP003892.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
clone:OJ1345_D02
Length = 159613
Score = 42.1 bits (21), Expect = 0.56
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 726 cacagatattaatgaatgcat 746
|||||||||||||||||||||
Sbjct: 67827 cacagatattaatgaatgcat 67847
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 42.1 bits (21), Expect = 0.56
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 726 cacagatattaatgaatgcat 746
|||||||||||||||||||||
Sbjct: 24528939 cacagatattaatgaatgcat 24528959
>gb|CH401230.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000067 genomic
scaffold, whole genome shotgun sequence
Length = 19501165
Score = 42.1 bits (21), Expect = 0.56
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 726 cacagatattaatgaatgcat 746
|||||||||||||||||||||
Sbjct: 16010709 cacagatattaatgaatgcat 16010729
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 42.1 bits (21), Expect = 0.56
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 726 cacagatattaatgaatgcat 746
|||||||||||||||||||||
Sbjct: 23612715 cacagatattaatgaatgcat 23612735
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 42.1 bits (21), Expect = 0.56
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 726 cacagatattaatgaatgcat 746
|||||||||||||||||||||
Sbjct: 24767026 cacagatattaatgaatgcat 24767046
>gb|CZ553515.1|CZ553515 M0010227 AS_TRIM_TDNA_B1 Oryza sativa (japonica cultivar-group)
genomic clone M0010227, DNA sequence
Length = 84
Score = 40.1 bits (20), Expect = 2.2
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 661 ggttaccgctgcaattgctccagtggat 688
|||||||||||||| ||||||| |||||
Sbjct: 75 ggttaccgctgcaagtgctccaatggat 48
>dbj|AK071360.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023090B05, full
insert sequence
Length = 2453
Score = 40.1 bits (20), Expect = 2.2
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 661 ggttaccgctgcaattgctccagtggat 688
|||||||||||||| ||||||| |||||
Sbjct: 882 ggttaccgctgcaagtgctccaatggat 909
>dbj|AP005555.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
clone:OJ1118_B06
Length = 106678
Score = 40.1 bits (20), Expect = 2.2
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 661 ggttaccgctgcaattgctccagtggat 688
|||||||||||||| ||||||| |||||
Sbjct: 100691 ggttaccgctgcaagtgctccaatggat 100664
>gb|AACV01020218.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg020218, whole
genome shotgun sequence
Length = 76063
Score = 40.1 bits (20), Expect = 2.2
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 661 ggttaccgctgcaattgctccagtggat 688
|||||||||||||| ||||||| |||||
Sbjct: 65353 ggttaccgctgcaagtgctccaatggat 65380
>ref|XM_450981.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2396
Score = 40.1 bits (20), Expect = 2.2
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 661 ggttaccgctgcaattgctccagtggat 688
|||||||||||||| ||||||| |||||
Sbjct: 825 ggttaccgctgcaagtgctccaatggat 852
>ref|NT_107084.1| Oryza sativa (japonica cultivar-group)
Length = 4175757
Score = 40.1 bits (20), Expect = 2.2
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 661 ggttaccgctgcaattgctccagtggat 688
|||||||||||||| ||||||| |||||
Sbjct: 3641675 ggttaccgctgcaagtgctccaatggat 3641648
>dbj|AP005573.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
clone:OJ1509_C06
Length = 113436
Score = 40.1 bits (20), Expect = 2.2
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 661 ggttaccgctgcaattgctccagtggat 688
|||||||||||||| ||||||| |||||
Sbjct: 1526 ggttaccgctgcaagtgctccaatggat 1499
>gb|CH401242.1| Oryza sativa (japonica cultivar-group) chromosome 9 scaffold000079 genomic
scaffold, whole genome shotgun sequence
Length = 12069826
Score = 40.1 bits (20), Expect = 2.2
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 661 ggttaccgctgcaattgctccagtggat 688
|||||||||||||| ||||||| |||||
Sbjct: 7250980 ggttaccgctgcaagtgctccaatggat 7250953
>gb|CM000146.1| Oryza sativa (japonica cultivar-group) chromosome 9, whole genome shotgun
sequence
Length = 21543637
Score = 40.1 bits (20), Expect = 2.2
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 661 ggttaccgctgcaattgctccagtggat 688
|||||||||||||| ||||||| |||||
Sbjct: 16724791 ggttaccgctgcaagtgctccaatggat 16724764
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
sequence
Length = 22696651
Score = 40.1 bits (20), Expect = 2.2
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 661 ggttaccgctgcaattgctccagtggat 688
|||||||||||||| ||||||| |||||
Sbjct: 17949872 ggttaccgctgcaagtgctccaatggat 17949845
>gb|AQ446878.2|AQ446878 nbxb0076L17f CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0076L17f, DNA sequence
Length = 836
Score = 38.2 bits (19), Expect = 8.7
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 516 gaacaacacaaacgacacaaaac 538
||||||||||||||| |||||||
Sbjct: 443 gaacaacacaaacgaaacaaaac 465
>dbj|AP003509.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0525F01
Length = 151668
Score = 38.2 bits (19), Expect = 8.7
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 841 ggaagtggttgcaatggag 859
|||||||||||||||||||
Sbjct: 84520 ggaagtggttgcaatggag 84502
>gb|AACV01003217.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg003217, whole
genome shotgun sequence
Length = 44922
Score = 38.2 bits (19), Expect = 8.7
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 702 atacctgcaagggccaaat 720
|||||||||||||||||||
Sbjct: 26983 atacctgcaagggccaaat 27001
>ref|NT_079873.2| Oryza sativa (japonica cultivar-group)
Length = 5116111
Score = 38.2 bits (19), Expect = 8.7
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 841 ggaagtggttgcaatggag 859
|||||||||||||||||||
Sbjct: 2446421 ggaagtggttgcaatggag 2446403
>dbj|AP004121.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1442_E05
Length = 162407
Score = 38.2 bits (19), Expect = 8.7
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 702 atacctgcaagggccaaat 720
|||||||||||||||||||
Sbjct: 116504 atacctgcaagggccaaat 116486
>ref|NT_107175.1| Oryza sativa (japonica cultivar-group)
Length = 2882457
Score = 38.2 bits (19), Expect = 8.7
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 702 atacctgcaagggccaaat 720
|||||||||||||||||||
Sbjct: 907296 atacctgcaagggccaaat 907278
>gb|CH401169.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000006
genomic scaffold, whole genome shotgun sequence
Length = 13452964
Score = 38.2 bits (19), Expect = 8.7
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 702 atacctgcaagggccaaat 720
|||||||||||||||||||
Sbjct: 923097 atacctgcaagggccaaat 923079
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 38.2 bits (19), Expect = 8.7
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 841 ggaagtggttgcaatggag 859
|||||||||||||||||||
Sbjct: 6754841 ggaagtggttgcaatggag 6754823
Database: Oryza_nucl_with_EST.fasta
Posted date: May 2, 2006 3:04 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,297,821
Number of Sequences: 438736
Number of extensions: 1297821
Number of successful extensions: 5848
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5457
Number of HSP's gapped (non-prelim): 391
length of query: 980
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 959
effective length of database: 2,791,206,460
effective search space: 2676766995140
effective search space used: 2676766995140
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)