BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 5532690.2.1
(863 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK120331.1| Oryza sativa (japonica cultivar-group) cDNA... 244 7e-062
ref|XM_473275.1| Oryza sativa (japonica cultivar-group), p... 244 7e-062
gb|AACV01010168.1| Oryza sativa (japonica cultivar-group) c... 178 3e-042
ref|NT_079865.2| Oryza sativa (japonica cultivar-group) 178 3e-042
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 178 3e-042
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 178 3e-042
emb|AL662976.3|OSJN00177 Oryza sativa genomic DNA, chromoso... 178 3e-042
emb|AL662984.3|OSJN00183 Oryza sativa genomic DNA, chromoso... 178 3e-042
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 178 3e-042
>dbj|AK120331.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013058N01, full
insert sequence
Length = 2527
Score = 244 bits (123), Expect = 7e-062
Identities = 225/259 (86%)
Strand = Plus / Minus
Query: 590 agatgctatatgaatatttggagtaacttaaaccatatccaaagccatacactacatctc 649
||||||| || |||||||| ||||| || |||||||| ||||| ||||| ||||||||||
Sbjct: 1928 agatgctgtacgaatattttgagtagctcaaaccatacccaaacccatatactacatctc 1869
Query: 650 cagtgtaaaatcgatatgttctcccagggtagcctcgtgaaggatcagctctcatgttca 709
|||||||||||| |||||||| || ||||| || ||||| | |||||||||||||||||
Sbjct: 1868 cagtgtaaaatctgtatgttcttcctgggtaaccacgtgacgcatcagctctcatgttca 1809
Query: 710 tatcagtcatgggaatagcagtaaaggattcaggataccaagttataggcagctttcctc 769
||||| ||| |||| |||||| ||||||||||| ||||||||||| |||||||||||||
Sbjct: 1808 tatcatccatcggaacagcagtgaaggattcagggtaccaagttatgggcagctttcctc 1749
Query: 770 ctgggttgtactctccaaaaagaatttctggaaggacttgtccaccaacctcgccaggat 829
|||||||||| | || ||||| ||||||||||| || | ||||||||||||||||||||
Sbjct: 1748 ctgggttgtatttcccgaaaaggatttctggaagaacatttccaccaacctcgccaggat 1689
Query: 830 atccgagccaaagaatgct 848
| || | ||||||||||||
Sbjct: 1688 aaccaatccaaagaatgct 1670
Score = 147 bits (74), Expect = 1e-032
Identities = 227/278 (81%)
Strand = Plus / Minus
Query: 276 gctcatatgcttgcaggggtcaacagtaatctccacactggatgcactgccagccgccgt 335
||||||| ||||||||||||| || || ||||||||| || || |||||||| || ||
Sbjct: 2254 gctcataagcttgcaggggtcgacggtgatctccacatcggttgatctgccagcggcagt 2195
Query: 336 gtggacacgctcaaagccaaccagctgttttataggaaagcccgggacgcttgatttcga 395
||| ||||||||||||||||| |||||||||||||| | || || | ||||| ||||||
Sbjct: 2194 gtgcacacgctcaaagccaactagctgttttataggggatcctggaaagcttggtttcga 2135
Query: 396 tctcgcgaacagaagaacagcatgactcccatccatgctaccatgattcgaaacagcgac 455
|||||||||| ||||| ||||| ||||| |||||| ||||| || ||||| | ||
Sbjct: 2134 actcgcgaacaatagaacggcatggctcccgtccatggcaccatcgttggaaaccgagat 2075
Query: 456 gtgaacagagaataccagagcttcacatgacgcgatatcttcagttttcacaaagtctag 515
|||||||| ||| ||| || || ||||| || || |||||| || ||| | ||||
Sbjct: 2074 gtgaacaggaaattgcagcgcctcgcatgaggcaatgtcttcaacttggacataatctac 2015
Query: 516 tccatccctccttgtgtatgcaggctttctgctgataa 553
||||||||||||||||||||||||||||||||||||||
Sbjct: 2014 tccatccctccttgtgtatgcaggctttctgctgataa 1977
>ref|XM_473275.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 2313
Score = 244 bits (123), Expect = 7e-062
Identities = 225/259 (86%)
Strand = Plus / Minus
Query: 590 agatgctatatgaatatttggagtaacttaaaccatatccaaagccatacactacatctc 649
||||||| || |||||||| ||||| || |||||||| ||||| ||||| ||||||||||
Sbjct: 1894 agatgctgtacgaatattttgagtagctcaaaccatacccaaacccatatactacatctc 1835
Query: 650 cagtgtaaaatcgatatgttctcccagggtagcctcgtgaaggatcagctctcatgttca 709
|||||||||||| |||||||| || ||||| || ||||| | |||||||||||||||||
Sbjct: 1834 cagtgtaaaatctgtatgttcttcctgggtaaccacgtgacgcatcagctctcatgttca 1775
Query: 710 tatcagtcatgggaatagcagtaaaggattcaggataccaagttataggcagctttcctc 769
||||| ||| |||| |||||| ||||||||||| ||||||||||| |||||||||||||
Sbjct: 1774 tatcatccatcggaacagcagtgaaggattcagggtaccaagttatgggcagctttcctc 1715
Query: 770 ctgggttgtactctccaaaaagaatttctggaaggacttgtccaccaacctcgccaggat 829
|||||||||| | || ||||| ||||||||||| || | ||||||||||||||||||||
Sbjct: 1714 ctgggttgtatttcccgaaaaggatttctggaagaacatttccaccaacctcgccaggat 1655
Query: 830 atccgagccaaagaatgct 848
| || | ||||||||||||
Sbjct: 1654 aaccaatccaaagaatgct 1636
Score = 147 bits (74), Expect = 1e-032
Identities = 227/278 (81%)
Strand = Plus / Minus
Query: 276 gctcatatgcttgcaggggtcaacagtaatctccacactggatgcactgccagccgccgt 335
||||||| ||||||||||||| || || ||||||||| || || |||||||| || ||
Sbjct: 2220 gctcataagcttgcaggggtcgacggtgatctccacatcggttgatctgccagcggcagt 2161
Query: 336 gtggacacgctcaaagccaaccagctgttttataggaaagcccgggacgcttgatttcga 395
||| ||||||||||||||||| |||||||||||||| | || || | ||||| ||||||
Sbjct: 2160 gtgcacacgctcaaagccaactagctgttttataggggatcctggaaagcttggtttcga 2101
Query: 396 tctcgcgaacagaagaacagcatgactcccatccatgctaccatgattcgaaacagcgac 455
|||||||||| ||||| ||||| ||||| |||||| ||||| || ||||| | ||
Sbjct: 2100 actcgcgaacaatagaacggcatggctcccgtccatggcaccatcgttggaaaccgagat 2041
Query: 456 gtgaacagagaataccagagcttcacatgacgcgatatcttcagttttcacaaagtctag 515
|||||||| ||| ||| || || ||||| || || |||||| || ||| | ||||
Sbjct: 2040 gtgaacaggaaattgcagcgcctcgcatgaggcaatgtcttcaacttggacataatctac 1981
Query: 516 tccatccctccttgtgtatgcaggctttctgctgataa 553
||||||||||||||||||||||||||||||||||||||
Sbjct: 1980 tccatccctccttgtgtatgcaggctttctgctgataa 1943
>gb|AACV01010168.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010168, whole
genome shotgun sequence
Length = 28462
Score = 178 bits (90), Expect = 3e-042
Identities = 159/182 (87%)
Strand = Plus / Plus
Query: 590 agatgctatatgaatatttggagtaacttaaaccatatccaaagccatacactacatctc 649
||||||| || |||||||| ||||| || |||||||| ||||| ||||| ||||||||||
Sbjct: 19735 agatgctgtacgaatattttgagtagctcaaaccatacccaaacccatatactacatctc 19794
Query: 650 cagtgtaaaatcgatatgttctcccagggtagcctcgtgaaggatcagctctcatgttca 709
|||||||||||| |||||||| || ||||| || ||||| | |||||||||||||||||
Sbjct: 19795 cagtgtaaaatctgtatgttcttcctgggtaaccacgtgacgcatcagctctcatgttca 19854
Query: 710 tatcagtcatgggaatagcagtaaaggattcaggataccaagttataggcagctttcctc 769
||||| ||| |||| |||||| ||||||||||| ||||||||||| |||||||||||||
Sbjct: 19855 tatcatccatcggaacagcagtgaaggattcagggtaccaagttatgggcagctttcctc 19914
Query: 770 ct 771
||
Sbjct: 19915 ct 19916
Score = 147 bits (74), Expect = 1e-032
Identities = 227/278 (81%)
Strand = Plus / Plus
Query: 276 gctcatatgcttgcaggggtcaacagtaatctccacactggatgcactgccagccgccgt 335
||||||| ||||||||||||| || || ||||||||| || || |||||||| || ||
Sbjct: 19409 gctcataagcttgcaggggtcgacggtgatctccacatcggttgatctgccagcggcagt 19468
Query: 336 gtggacacgctcaaagccaaccagctgttttataggaaagcccgggacgcttgatttcga 395
||| ||||||||||||||||| |||||||||||||| | || || | ||||| ||||||
Sbjct: 19469 gtgcacacgctcaaagccaactagctgttttataggggatcctggaaagcttggtttcga 19528
Query: 396 tctcgcgaacagaagaacagcatgactcccatccatgctaccatgattcgaaacagcgac 455
|||||||||| ||||| ||||| ||||| |||||| ||||| || ||||| | ||
Sbjct: 19529 actcgcgaacaatagaacggcatggctcccgtccatggcaccatcgttggaaaccgagat 19588
Query: 456 gtgaacagagaataccagagcttcacatgacgcgatatcttcagttttcacaaagtctag 515
|||||||| ||| ||| || || ||||| || || |||||| || ||| | ||||
Sbjct: 19589 gtgaacaggaaattgcagcgcctcgcatgaggcaatgtcttcaacttggacataatctac 19648
Query: 516 tccatccctccttgtgtatgcaggctttctgctgataa 553
||||||||||||||||||||||||||||||||||||||
Sbjct: 19649 tccatccctccttgtgtatgcaggctttctgctgataa 19686
Score = 71.9 bits (36), Expect = 5e-010
Identities = 69/80 (86%)
Strand = Plus / Plus
Query: 769 cctgggttgtactctccaaaaagaatttctggaaggacttgtccaccaacctcgccagga 828
||||||||||| | || ||||| ||||||||||| || | |||||||||||||||||||
Sbjct: 20008 cctgggttgtatttcccgaaaaggatttctggaagaacatttccaccaacctcgccagga 20067
Query: 829 tatccgagccaaagaatgct 848
|| || | ||||||||||||
Sbjct: 20068 taaccaatccaaagaatgct 20087
>ref|NT_079865.2| Oryza sativa (japonica cultivar-group)
Length = 3674553
Score = 178 bits (90), Expect = 3e-042
Identities = 159/182 (87%)
Strand = Plus / Plus
Query: 590 agatgctatatgaatatttggagtaacttaaaccatatccaaagccatacactacatctc 649
||||||| || |||||||| ||||| || |||||||| ||||| ||||| ||||||||||
Sbjct: 293857 agatgctgtacgaatattttgagtagctcaaaccatacccaaacccatatactacatctc 293916
Query: 650 cagtgtaaaatcgatatgttctcccagggtagcctcgtgaaggatcagctctcatgttca 709
|||||||||||| |||||||| || ||||| || ||||| | |||||||||||||||||
Sbjct: 293917 cagtgtaaaatctgtatgttcttcctgggtaaccacgtgacgcatcagctctcatgttca 293976
Query: 710 tatcagtcatgggaatagcagtaaaggattcaggataccaagttataggcagctttcctc 769
||||| ||| |||| |||||| ||||||||||| ||||||||||| |||||||||||||
Sbjct: 293977 tatcatccatcggaacagcagtgaaggattcagggtaccaagttatgggcagctttcctc 294036
Query: 770 ct 771
||
Sbjct: 294037 ct 294038
Score = 147 bits (74), Expect = 1e-032
Identities = 227/278 (81%)
Strand = Plus / Plus
Query: 276 gctcatatgcttgcaggggtcaacagtaatctccacactggatgcactgccagccgccgt 335
||||||| ||||||||||||| || || ||||||||| || || |||||||| || ||
Sbjct: 293531 gctcataagcttgcaggggtcgacggtgatctccacatcggttgatctgccagcggcagt 293590
Query: 336 gtggacacgctcaaagccaaccagctgttttataggaaagcccgggacgcttgatttcga 395
||| ||||||||||||||||| |||||||||||||| | || || | ||||| ||||||
Sbjct: 293591 gtgcacacgctcaaagccaactagctgttttataggggatcctggaaagcttggtttcga 293650
Query: 396 tctcgcgaacagaagaacagcatgactcccatccatgctaccatgattcgaaacagcgac 455
|||||||||| ||||| ||||| ||||| |||||| ||||| || ||||| | ||
Sbjct: 293651 actcgcgaacaatagaacggcatggctcccgtccatggcaccatcgttggaaaccgagat 293710
Query: 456 gtgaacagagaataccagagcttcacatgacgcgatatcttcagttttcacaaagtctag 515
|||||||| ||| ||| || || ||||| || || |||||| || ||| | ||||
Sbjct: 293711 gtgaacaggaaattgcagcgcctcgcatgaggcaatgtcttcaacttggacataatctac 293770
Query: 516 tccatccctccttgtgtatgcaggctttctgctgataa 553
||||||||||||||||||||||||||||||||||||||
Sbjct: 293771 tccatccctccttgtgtatgcaggctttctgctgataa 293808
Score = 71.9 bits (36), Expect = 5e-010
Identities = 69/80 (86%)
Strand = Plus / Plus
Query: 769 cctgggttgtactctccaaaaagaatttctggaaggacttgtccaccaacctcgccagga 828
||||||||||| | || ||||| ||||||||||| || | |||||||||||||||||||
Sbjct: 294130 cctgggttgtatttcccgaaaaggatttctggaagaacatttccaccaacctcgccagga 294189
Query: 829 tatccgagccaaagaatgct 848
|| || | ||||||||||||
Sbjct: 294190 taaccaatccaaagaatgct 294209
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 178 bits (90), Expect = 3e-042
Identities = 159/182 (87%)
Strand = Plus / Plus
Query: 590 agatgctatatgaatatttggagtaacttaaaccatatccaaagccatacactacatctc 649
||||||| || |||||||| ||||| || |||||||| ||||| ||||| ||||||||||
Sbjct: 4348691 agatgctgtacgaatattttgagtagctcaaaccatacccaaacccatatactacatctc 4348750
Query: 650 cagtgtaaaatcgatatgttctcccagggtagcctcgtgaaggatcagctctcatgttca 709
|||||||||||| |||||||| || ||||| || ||||| | |||||||||||||||||
Sbjct: 4348751 cagtgtaaaatctgtatgttcttcctgggtaaccacgtgacgcatcagctctcatgttca 4348810
Query: 710 tatcagtcatgggaatagcagtaaaggattcaggataccaagttataggcagctttcctc 769
||||| ||| |||| |||||| ||||||||||| ||||||||||| |||||||||||||
Sbjct: 4348811 tatcatccatcggaacagcagtgaaggattcagggtaccaagttatgggcagctttcctc 4348870
Query: 770 ct 771
||
Sbjct: 4348871 ct 4348872
Score = 147 bits (74), Expect = 1e-032
Identities = 227/278 (81%)
Strand = Plus / Plus
Query: 276 gctcatatgcttgcaggggtcaacagtaatctccacactggatgcactgccagccgccgt 335
||||||| ||||||||||||| || || ||||||||| || || |||||||| || ||
Sbjct: 4348365 gctcataagcttgcaggggtcgacggtgatctccacatcggttgatctgccagcggcagt 4348424
Query: 336 gtggacacgctcaaagccaaccagctgttttataggaaagcccgggacgcttgatttcga 395
||| ||||||||||||||||| |||||||||||||| | || || | ||||| ||||||
Sbjct: 4348425 gtgcacacgctcaaagccaactagctgttttataggggatcctggaaagcttggtttcga 4348484
Query: 396 tctcgcgaacagaagaacagcatgactcccatccatgctaccatgattcgaaacagcgac 455
|||||||||| ||||| ||||| ||||| |||||| ||||| || ||||| | ||
Sbjct: 4348485 actcgcgaacaatagaacggcatggctcccgtccatggcaccatcgttggaaaccgagat 4348544
Query: 456 gtgaacagagaataccagagcttcacatgacgcgatatcttcagttttcacaaagtctag 515
|||||||| ||| ||| || || ||||| || || |||||| || ||| | ||||
Sbjct: 4348545 gtgaacaggaaattgcagcgcctcgcatgaggcaatgtcttcaacttggacataatctac 4348604
Query: 516 tccatccctccttgtgtatgcaggctttctgctgataa 553
||||||||||||||||||||||||||||||||||||||
Sbjct: 4348605 tccatccctccttgtgtatgcaggctttctgctgataa 4348642
Score = 71.9 bits (36), Expect = 5e-010
Identities = 69/80 (86%)
Strand = Plus / Plus
Query: 769 cctgggttgtactctccaaaaagaatttctggaaggacttgtccaccaacctcgccagga 828
||||||||||| | || ||||| ||||||||||| || | |||||||||||||||||||
Sbjct: 4348964 cctgggttgtatttcccgaaaaggatttctggaagaacatttccaccaacctcgccagga 4349023
Query: 829 tatccgagccaaagaatgct 848
|| || | ||||||||||||
Sbjct: 4349024 taaccaatccaaagaatgct 4349043
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 178 bits (90), Expect = 3e-042
Identities = 159/182 (87%)
Strand = Plus / Plus
Query: 590 agatgctatatgaatatttggagtaacttaaaccatatccaaagccatacactacatctc 649
||||||| || |||||||| ||||| || |||||||| ||||| ||||| ||||||||||
Sbjct: 23492790 agatgctgtacgaatattttgagtagctcaaaccatacccaaacccatatactacatctc 23492849
Query: 650 cagtgtaaaatcgatatgttctcccagggtagcctcgtgaaggatcagctctcatgttca 709
|||||||||||| |||||||| || ||||| || ||||| | |||||||||||||||||
Sbjct: 23492850 cagtgtaaaatctgtatgttcttcctgggtaaccacgtgacgcatcagctctcatgttca 23492909
Query: 710 tatcagtcatgggaatagcagtaaaggattcaggataccaagttataggcagctttcctc 769
||||| ||| |||| |||||| ||||||||||| ||||||||||| |||||||||||||
Sbjct: 23492910 tatcatccatcggaacagcagtgaaggattcagggtaccaagttatgggcagctttcctc 23492969
Query: 770 ct 771
||
Sbjct: 23492970 ct 23492971
Score = 147 bits (74), Expect = 1e-032
Identities = 227/278 (81%)
Strand = Plus / Plus
Query: 276 gctcatatgcttgcaggggtcaacagtaatctccacactggatgcactgccagccgccgt 335
||||||| ||||||||||||| || || ||||||||| || || |||||||| || ||
Sbjct: 23492464 gctcataagcttgcaggggtcgacggtgatctccacatcggttgatctgccagcggcagt 23492523
Query: 336 gtggacacgctcaaagccaaccagctgttttataggaaagcccgggacgcttgatttcga 395
||| ||||||||||||||||| |||||||||||||| | || || | ||||| ||||||
Sbjct: 23492524 gtgcacacgctcaaagccaactagctgttttataggggatcctggaaagcttggtttcga 23492583
Query: 396 tctcgcgaacagaagaacagcatgactcccatccatgctaccatgattcgaaacagcgac 455
|||||||||| ||||| ||||| ||||| |||||| ||||| || ||||| | ||
Sbjct: 23492584 actcgcgaacaatagaacggcatggctcccgtccatggcaccatcgttggaaaccgagat 23492643
Query: 456 gtgaacagagaataccagagcttcacatgacgcgatatcttcagttttcacaaagtctag 515
|||||||| ||| ||| || || ||||| || || |||||| || ||| | ||||
Sbjct: 23492644 gtgaacaggaaattgcagcgcctcgcatgaggcaatgtcttcaacttggacataatctac 23492703
Query: 516 tccatccctccttgtgtatgcaggctttctgctgataa 553
||||||||||||||||||||||||||||||||||||||
Sbjct: 23492704 tccatccctccttgtgtatgcaggctttctgctgataa 23492741
Score = 71.9 bits (36), Expect = 5e-010
Identities = 69/80 (86%)
Strand = Plus / Plus
Query: 769 cctgggttgtactctccaaaaagaatttctggaaggacttgtccaccaacctcgccagga 828
||||||||||| | || ||||| ||||||||||| || | |||||||||||||||||||
Sbjct: 23493063 cctgggttgtatttcccgaaaaggatttctggaagaacatttccaccaacctcgccagga 23493122
Query: 829 tatccgagccaaagaatgct 848
|| || | ||||||||||||
Sbjct: 23493123 taaccaatccaaagaatgct 23493142
>emb|AL662976.3|OSJN00177 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0074L08,
complete sequence
Length = 171551
Score = 178 bits (90), Expect = 3e-042
Identities = 159/182 (87%)
Strand = Plus / Plus
Query: 590 agatgctatatgaatatttggagtaacttaaaccatatccaaagccatacactacatctc 649
||||||| || |||||||| ||||| || |||||||| ||||| ||||| ||||||||||
Sbjct: 157913 agatgctgtacgaatattttgagtagctcaaaccatacccaaacccatatactacatctc 157972
Query: 650 cagtgtaaaatcgatatgttctcccagggtagcctcgtgaaggatcagctctcatgttca 709
|||||||||||| |||||||| || ||||| || ||||| | |||||||||||||||||
Sbjct: 157973 cagtgtaaaatctgtatgttcttcctgggtaaccacgtgacgcatcagctctcatgttca 158032
Query: 710 tatcagtcatgggaatagcagtaaaggattcaggataccaagttataggcagctttcctc 769
||||| ||| |||| |||||| ||||||||||| ||||||||||| |||||||||||||
Sbjct: 158033 tatcatccatcggaacagcagtgaaggattcagggtaccaagttatgggcagctttcctc 158092
Query: 770 ct 771
||
Sbjct: 158093 ct 158094
Score = 147 bits (74), Expect = 1e-032
Identities = 227/278 (81%)
Strand = Plus / Plus
Query: 276 gctcatatgcttgcaggggtcaacagtaatctccacactggatgcactgccagccgccgt 335
||||||| ||||||||||||| || || ||||||||| || || |||||||| || ||
Sbjct: 157587 gctcataagcttgcaggggtcgacggtgatctccacatcggttgatctgccagcggcagt 157646
Query: 336 gtggacacgctcaaagccaaccagctgttttataggaaagcccgggacgcttgatttcga 395
||| ||||||||||||||||| |||||||||||||| | || || | ||||| ||||||
Sbjct: 157647 gtgcacacgctcaaagccaactagctgttttataggggatcctggaaagcttggtttcga 157706
Query: 396 tctcgcgaacagaagaacagcatgactcccatccatgctaccatgattcgaaacagcgac 455
|||||||||| ||||| ||||| ||||| |||||| ||||| || ||||| | ||
Sbjct: 157707 actcgcgaacaatagaacggcatggctcccgtccatggcaccatcgttggaaaccgagat 157766
Query: 456 gtgaacagagaataccagagcttcacatgacgcgatatcttcagttttcacaaagtctag 515
|||||||| ||| ||| || || ||||| || || |||||| || ||| | ||||
Sbjct: 157767 gtgaacaggaaattgcagcgcctcgcatgaggcaatgtcttcaacttggacataatctac 157826
Query: 516 tccatccctccttgtgtatgcaggctttctgctgataa 553
||||||||||||||||||||||||||||||||||||||
Sbjct: 157827 tccatccctccttgtgtatgcaggctttctgctgataa 157864
Score = 71.9 bits (36), Expect = 5e-010
Identities = 69/80 (86%)
Strand = Plus / Plus
Query: 769 cctgggttgtactctccaaaaagaatttctggaaggacttgtccaccaacctcgccagga 828
||||||||||| | || ||||| ||||||||||| || | |||||||||||||||||||
Sbjct: 158186 cctgggttgtatttcccgaaaaggatttctggaagaacatttccaccaacctcgccagga 158245
Query: 829 tatccgagccaaagaatgct 848
|| || | ||||||||||||
Sbjct: 158246 taaccaatccaaagaatgct 158265
>emb|AL662984.3|OSJN00183 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0081C01,
complete sequence
Length = 140454
Score = 178 bits (90), Expect = 3e-042
Identities = 159/182 (87%)
Strand = Plus / Plus
Query: 590 agatgctatatgaatatttggagtaacttaaaccatatccaaagccatacactacatctc 649
||||||| || |||||||| ||||| || |||||||| ||||| ||||| ||||||||||
Sbjct: 54160 agatgctgtacgaatattttgagtagctcaaaccatacccaaacccatatactacatctc 54219
Query: 650 cagtgtaaaatcgatatgttctcccagggtagcctcgtgaaggatcagctctcatgttca 709
|||||||||||| |||||||| || ||||| || ||||| | |||||||||||||||||
Sbjct: 54220 cagtgtaaaatctgtatgttcttcctgggtaaccacgtgacgcatcagctctcatgttca 54279
Query: 710 tatcagtcatgggaatagcagtaaaggattcaggataccaagttataggcagctttcctc 769
||||| ||| |||| |||||| ||||||||||| ||||||||||| |||||||||||||
Sbjct: 54280 tatcatccatcggaacagcagtgaaggattcagggtaccaagttatgggcagctttcctc 54339
Query: 770 ct 771
||
Sbjct: 54340 ct 54341
Score = 147 bits (74), Expect = 1e-032
Identities = 227/278 (81%)
Strand = Plus / Plus
Query: 276 gctcatatgcttgcaggggtcaacagtaatctccacactggatgcactgccagccgccgt 335
||||||| ||||||||||||| || || ||||||||| || || |||||||| || ||
Sbjct: 53834 gctcataagcttgcaggggtcgacggtgatctccacatcggttgatctgccagcggcagt 53893
Query: 336 gtggacacgctcaaagccaaccagctgttttataggaaagcccgggacgcttgatttcga 395
||| ||||||||||||||||| |||||||||||||| | || || | ||||| ||||||
Sbjct: 53894 gtgcacacgctcaaagccaactagctgttttataggggatcctggaaagcttggtttcga 53953
Query: 396 tctcgcgaacagaagaacagcatgactcccatccatgctaccatgattcgaaacagcgac 455
|||||||||| ||||| ||||| ||||| |||||| ||||| || ||||| | ||
Sbjct: 53954 actcgcgaacaatagaacggcatggctcccgtccatggcaccatcgttggaaaccgagat 54013
Query: 456 gtgaacagagaataccagagcttcacatgacgcgatatcttcagttttcacaaagtctag 515
|||||||| ||| ||| || || ||||| || || |||||| || ||| | ||||
Sbjct: 54014 gtgaacaggaaattgcagcgcctcgcatgaggcaatgtcttcaacttggacataatctac 54073
Query: 516 tccatccctccttgtgtatgcaggctttctgctgataa 553
||||||||||||||||||||||||||||||||||||||
Sbjct: 54074 tccatccctccttgtgtatgcaggctttctgctgataa 54111
Score = 71.9 bits (36), Expect = 5e-010
Identities = 69/80 (86%)
Strand = Plus / Plus
Query: 769 cctgggttgtactctccaaaaagaatttctggaaggacttgtccaccaacctcgccagga 828
||||||||||| | || ||||| ||||||||||| || | |||||||||||||||||||
Sbjct: 54433 cctgggttgtatttcccgaaaaggatttctggaagaacatttccaccaacctcgccagga 54492
Query: 829 tatccgagccaaagaatgct 848
|| || | ||||||||||||
Sbjct: 54493 taaccaatccaaagaatgct 54512
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 178 bits (90), Expect = 3e-042
Identities = 159/182 (87%)
Strand = Plus / Plus
Query: 590 agatgctatatgaatatttggagtaacttaaaccatatccaaagccatacactacatctc 649
||||||| || |||||||| ||||| || |||||||| ||||| ||||| ||||||||||
Sbjct: 26517273 agatgctgtacgaatattttgagtagctcaaaccatacccaaacccatatactacatctc 26517332
Query: 650 cagtgtaaaatcgatatgttctcccagggtagcctcgtgaaggatcagctctcatgttca 709
|||||||||||| |||||||| || ||||| || ||||| | |||||||||||||||||
Sbjct: 26517333 cagtgtaaaatctgtatgttcttcctgggtaaccacgtgacgcatcagctctcatgttca 26517392
Query: 710 tatcagtcatgggaatagcagtaaaggattcaggataccaagttataggcagctttcctc 769
||||| ||| |||| |||||| ||||||||||| ||||||||||| |||||||||||||
Sbjct: 26517393 tatcatccatcggaacagcagtgaaggattcagggtaccaagttatgggcagctttcctc 26517452
Query: 770 ct 771
||
Sbjct: 26517453 ct 26517454
Score = 147 bits (74), Expect = 1e-032
Identities = 227/278 (81%)
Strand = Plus / Plus
Query: 276 gctcatatgcttgcaggggtcaacagtaatctccacactggatgcactgccagccgccgt 335
||||||| ||||||||||||| || || ||||||||| || || |||||||| || ||
Sbjct: 26516947 gctcataagcttgcaggggtcgacggtgatctccacatcggttgatctgccagcggcagt 26517006
Query: 336 gtggacacgctcaaagccaaccagctgttttataggaaagcccgggacgcttgatttcga 395
||| ||||||||||||||||| |||||||||||||| | || || | ||||| ||||||
Sbjct: 26517007 gtgcacacgctcaaagccaactagctgttttataggggatcctggaaagcttggtttcga 26517066
Query: 396 tctcgcgaacagaagaacagcatgactcccatccatgctaccatgattcgaaacagcgac 455
|||||||||| ||||| ||||| ||||| |||||| ||||| || ||||| | ||
Sbjct: 26517067 actcgcgaacaatagaacggcatggctcccgtccatggcaccatcgttggaaaccgagat 26517126
Query: 456 gtgaacagagaataccagagcttcacatgacgcgatatcttcagttttcacaaagtctag 515
|||||||| ||| ||| || || ||||| || || |||||| || ||| | ||||
Sbjct: 26517127 gtgaacaggaaattgcagcgcctcgcatgaggcaatgtcttcaacttggacataatctac 26517186
Query: 516 tccatccctccttgtgtatgcaggctttctgctgataa 553
||||||||||||||||||||||||||||||||||||||
Sbjct: 26517187 tccatccctccttgtgtatgcaggctttctgctgataa 26517224
Score = 71.9 bits (36), Expect = 5e-010
Identities = 69/80 (86%)
Strand = Plus / Plus
Query: 769 cctgggttgtactctccaaaaagaatttctggaaggacttgtccaccaacctcgccagga 828
||||||||||| | || ||||| ||||||||||| || | |||||||||||||||||||
Sbjct: 26517546 cctgggttgtatttcccgaaaaggatttctggaagaacatttccaccaacctcgccagga 26517605
Query: 829 tatccgagccaaagaatgct 848
|| || | ||||||||||||
Sbjct: 26517606 taaccaatccaaagaatgct 26517625
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,051,040
Number of Sequences: 438736
Number of extensions: 1051040
Number of successful extensions: 4433
Number of sequences better than 0.5: 9
Number of HSP's better than 0.5 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4363
Number of HSP's gapped (non-prelim): 70
length of query: 863
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 842
effective length of database: 2,791,206,460
effective search space: 2350195839320
effective search space used: 2350195839320
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)