BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 4790360.2.1
(667 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK110688.1| Oryza sativa (japonica cultivar-group) cDNA... 381 e-103
gb|AU055721.1|AU055721 AU055721 Oryza sativa mature leaf Ni... 313 7e-083
dbj|AP004239.1| Oryza sativa (japonica cultivar-group) chro... 206 1e-050
dbj|AP004844.1| Oryza sativa (japonica cultivar-group) chro... 206 1e-050
gb|AACV01013060.1| Oryza sativa (japonica cultivar-group) c... 206 1e-050
dbj|AP007223.2| Oryza sativa (japonica cultivar-group) geno... 206 1e-050
gb|CH401209.1| Oryza sativa (japonica cultivar-group) chrom... 206 1e-050
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 206 1e-050
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 206 1e-050
gb|AZ129915.1|AZ129915 OSJNBb0080B16r CUGI Rice BAC Library... 123 1e-025
gb|AQ574531.1|AQ574531 nbxb0085L11f CUGI Rice BAC Library O... 111 5e-022
dbj|AP006533.3| Oryza sativa (japonica cultivar-group) geno... 105 3e-020
gb|AACV01000611.1| Oryza sativa (japonica cultivar-group) c... 42 0.38
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 42 0.38
ref|NT_036312.3| Oryza sativa (japonica cultivar-group) 42 0.38
dbj|AP002525.1| Oryza sativa (japonica cultivar-group) geno... 42 0.38
gb|CH401164.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.38
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.38
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 42 0.38
>dbj|AK110688.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-170-A01, full
insert sequence
Length = 1543
Score = 381 bits (192), Expect = e-103
Identities = 288/320 (90%)
Strand = Plus / Plus
Query: 3 atgagccccaatcctttttactcggatcacaatacttccttcatgcatatgggccaattt 62
||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 819 atgagccacaatcctttttgctcggatcagaatacttccttcatgcatatgggcccattt 878
Query: 63 atgctttatcagctgacgtggtggctagcttggttgcattgcgaaacaacagtttccgta 122
| ||||||||||| || |||||||| ||||||||||| ||| | ||||||||||||||||
Sbjct: 879 acgctttatcagccgatgtggtggcaagcttggttgccttgaggaacaacagtttccgta 938
Query: 123 tgttcagcaacgaggacgttacaattggatcgtggatgcttgctatgaacgtcaaccatg 182
|||||||||| ||||| ||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 939 tgttcagcaatgaggatgttactattggatcctggatgcttgctatgaacgtcaaccatg 998
Query: 183 agaacacacatgcactttgtgaacctgactgcacggagtcttcaattgctgtttgggaca 242
|||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||| |
Sbjct: 999 agaacacacatgcactttgttcacctgagtgcacagagtcttcaattgctgtttgggata 1058
Query: 243 tcccaaaatgctcaggtctatgccacccagaggtaaaaatgctagagctccatgaaagaa 302
| |||||||| ||||| ||||||||||| |||||||| ||||| ||||| ||| ||| |
Sbjct: 1059 ttccaaaatgttcagggctatgccacccggaggtaaagatgctggagcttcatcgaagga 1118
Query: 303 aagaatgcacaggtggtcca 322
| ||||| ||||||||||||
Sbjct: 1119 aggaatgtacaggtggtcca 1138
>gb|AU055721.1|AU055721 AU055721 Oryza sativa mature leaf Nipponbare Oryza sativa (japonica
cultivar-group) cDNA clone S20018_1A, mRNA sequence
Length = 352
Score = 313 bits (158), Expect = 7e-083
Identities = 215/234 (91%)
Strand = Plus / Plus
Query: 3 atgagccccaatcctttttactcggatcacaatacttccttcatgcatatgggccaattt 62
||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 119 atgagccacaatcctttttgctcggatcagaatacttccttcatgcatatgggcctattt 178
Query: 63 atgctttatcagctgacgtggtggctagcttggttgcattgcgaaacaacagtttccgta 122
| ||||||||||| || |||||||| ||||||||||| ||| | ||||||||||||||||
Sbjct: 179 acgctttatcagccgatgtggtggcaagcttggttgccttgaggaacaacagtttccgta 238
Query: 123 tgttcagcaacgaggacgttacaattggatcgtggatgcttgctatgaacgtcaaccatg 182
|||||||||| ||||| ||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 239 tgttcagcaatgaggatgttactattggatcctggatgcttgctatgaacgtcaaccatg 298
Query: 183 agaacacacatgcactttgtgaacctgactgcacggagtcttcaattgctgttt 236
|||||||||||||||||||| |||||| ||||| |||||||||||||||||||
Sbjct: 299 agaacacacatgcactttgttcacctgagtgcacagagtcttcaattgctgttt 352
>dbj|AP004239.1| Oryza sativa (japonica cultivar-group) chromosome 6 clone OJ1115_C07, ***
SEQUENCING IN PROGRESS ***
Length = 153595
Score = 206 bits (104), Expect = 1e-050
Identities = 137/148 (92%)
Strand = Plus / Plus
Query: 112 cagtttccgtatgttcagcaacgaggacgttacaattggatcgtggatgcttgctatgaa 171
||||||||||||||||||||| ||||| ||||| |||||||| |||||||||||||||||
Sbjct: 120170 cagtttccgtatgttcagcaatgaggatgttactattggatcctggatgcttgctatgaa 120229
Query: 172 cgtcaaccatgagaacacacatgcactttgtgaacctgactgcacggagtcttcaattgc 231
||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||
Sbjct: 120230 cgtcaaccatgagaacacacatgcactttgttcacctgagtgcacagagtcttcaattgc 120289
Query: 232 tgtttgggacatcccaaaatgctcaggt 259
||||||||| || |||||||| ||||||
Sbjct: 120290 tgtttgggatattccaaaatgttcaggt 120317
Score = 135 bits (68), Expect = 3e-029
Identities = 101/112 (90%)
Strand = Plus / Plus
Query: 3 atgagccccaatcctttttactcggatcacaatacttccttcatgcatatgggccaattt 62
||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 119463 atgagccacaatcctttttgctcggatcagaatacttccttcatgcatatgggcctattt 119522
Query: 63 atgctttatcagctgacgtggtggctagcttggttgcattgcgaaacaacag 114
| ||||||||||| || |||||||| ||||||||||| ||| | ||||||||
Sbjct: 119523 acgctttatcagccgatgtggtggcaagcttggttgccttgaggaacaacag 119574
Score = 56.0 bits (28), Expect = 3e-005
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 255 caggtctatgccacccagaggtaaaaatgctagagctccatgaaagaaaagaatgcacag 314
|||| ||||||||||| |||||||| ||||| ||||| ||| ||| || ||||| ||||
Sbjct: 120703 cagggctatgccacccggaggtaaagatgctggagcttcatcgaaggaaggaatgtacag 120762
Query: 315 gtggtcca 322
||||||||
Sbjct: 120763 gtggtcca 120770
>dbj|AP004844.1| Oryza sativa (japonica cultivar-group) chromosome 6 clone B1160E02, ***
SEQUENCING IN PROGRESS ***
Length = 189953
Score = 206 bits (104), Expect = 1e-050
Identities = 137/148 (92%)
Strand = Plus / Plus
Query: 112 cagtttccgtatgttcagcaacgaggacgttacaattggatcgtggatgcttgctatgaa 171
||||||||||||||||||||| ||||| ||||| |||||||| |||||||||||||||||
Sbjct: 141728 cagtttccgtatgttcagcaatgaggatgttactattggatcctggatgcttgctatgaa 141787
Query: 172 cgtcaaccatgagaacacacatgcactttgtgaacctgactgcacggagtcttcaattgc 231
||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||
Sbjct: 141788 cgtcaaccatgagaacacacatgcactttgttcacctgagtgcacagagtcttcaattgc 141847
Query: 232 tgtttgggacatcccaaaatgctcaggt 259
||||||||| || |||||||| ||||||
Sbjct: 141848 tgtttgggatattccaaaatgttcaggt 141875
Score = 135 bits (68), Expect = 3e-029
Identities = 101/112 (90%)
Strand = Plus / Plus
Query: 3 atgagccccaatcctttttactcggatcacaatacttccttcatgcatatgggccaattt 62
||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 141021 atgagccacaatcctttttgctcggatcagaatacttccttcatgcatatgggcctattt 141080
Query: 63 atgctttatcagctgacgtggtggctagcttggttgcattgcgaaacaacag 114
| ||||||||||| || |||||||| ||||||||||| ||| | ||||||||
Sbjct: 141081 acgctttatcagccgatgtggtggcaagcttggttgccttgaggaacaacag 141132
Score = 56.0 bits (28), Expect = 3e-005
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 255 caggtctatgccacccagaggtaaaaatgctagagctccatgaaagaaaagaatgcacag 314
|||| ||||||||||| |||||||| ||||| ||||| ||| ||| || ||||| ||||
Sbjct: 142261 cagggctatgccacccggaggtaaagatgctggagcttcatcgaaggaaggaatgtacag 142320
Query: 315 gtggtcca 322
||||||||
Sbjct: 142321 gtggtcca 142328
>gb|AACV01013060.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg013060, whole
genome shotgun sequence
Length = 20070
Score = 206 bits (104), Expect = 1e-050
Identities = 137/148 (92%)
Strand = Plus / Minus
Query: 112 cagtttccgtatgttcagcaacgaggacgttacaattggatcgtggatgcttgctatgaa 171
||||||||||||||||||||| ||||| ||||| |||||||| |||||||||||||||||
Sbjct: 7926 cagtttccgtatgttcagcaatgaggatgttactattggatcctggatgcttgctatgaa 7867
Query: 172 cgtcaaccatgagaacacacatgcactttgtgaacctgactgcacggagtcttcaattgc 231
||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||
Sbjct: 7866 cgtcaaccatgagaacacacatgcactttgttcacctgagtgcacagagtcttcaattgc 7807
Query: 232 tgtttgggacatcccaaaatgctcaggt 259
||||||||| || |||||||| ||||||
Sbjct: 7806 tgtttgggatattccaaaatgttcaggt 7779
Score = 135 bits (68), Expect = 3e-029
Identities = 101/112 (90%)
Strand = Plus / Minus
Query: 3 atgagccccaatcctttttactcggatcacaatacttccttcatgcatatgggccaattt 62
||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 8633 atgagccacaatcctttttgctcggatcagaatacttccttcatgcatatgggcctattt 8574
Query: 63 atgctttatcagctgacgtggtggctagcttggttgcattgcgaaacaacag 114
| ||||||||||| || |||||||| ||||||||||| ||| | ||||||||
Sbjct: 8573 acgctttatcagccgatgtggtggcaagcttggttgccttgaggaacaacag 8522
Score = 56.0 bits (28), Expect = 3e-005
Identities = 58/68 (85%)
Strand = Plus / Minus
Query: 255 caggtctatgccacccagaggtaaaaatgctagagctccatgaaagaaaagaatgcacag 314
|||| ||||||||||| |||||||| ||||| ||||| ||| ||| || ||||| ||||
Sbjct: 7393 cagggctatgccacccggaggtaaagatgctggagcttcatcgaaggaaggaatgtacag 7334
Query: 315 gtggtcca 322
||||||||
Sbjct: 7333 gtggtcca 7326
>dbj|AP007223.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0046E09
Length = 146776
Score = 206 bits (104), Expect = 1e-050
Identities = 137/148 (92%)
Strand = Plus / Plus
Query: 112 cagtttccgtatgttcagcaacgaggacgttacaattggatcgtggatgcttgctatgaa 171
||||||||||||||||||||| ||||| ||||| |||||||| |||||||||||||||||
Sbjct: 65435 cagtttccgtatgttcagcaatgaggatgttactattggatcctggatgcttgctatgaa 65494
Query: 172 cgtcaaccatgagaacacacatgcactttgtgaacctgactgcacggagtcttcaattgc 231
||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||
Sbjct: 65495 cgtcaaccatgagaacacacatgcactttgttcacctgagtgcacagagtcttcaattgc 65554
Query: 232 tgtttgggacatcccaaaatgctcaggt 259
||||||||| || |||||||| ||||||
Sbjct: 65555 tgtttgggatattccaaaatgttcaggt 65582
Score = 135 bits (68), Expect = 3e-029
Identities = 101/112 (90%)
Strand = Plus / Plus
Query: 3 atgagccccaatcctttttactcggatcacaatacttccttcatgcatatgggccaattt 62
||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 64728 atgagccacaatcctttttgctcggatcagaatacttccttcatgcatatgggcctattt 64787
Query: 63 atgctttatcagctgacgtggtggctagcttggttgcattgcgaaacaacag 114
| ||||||||||| || |||||||| ||||||||||| ||| | ||||||||
Sbjct: 64788 acgctttatcagccgatgtggtggcaagcttggttgccttgaggaacaacag 64839
Score = 56.0 bits (28), Expect = 3e-005
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 255 caggtctatgccacccagaggtaaaaatgctagagctccatgaaagaaaagaatgcacag 314
|||| ||||||||||| |||||||| ||||| ||||| ||| ||| || ||||| ||||
Sbjct: 65968 cagggctatgccacccggaggtaaagatgctggagcttcatcgaaggaaggaatgtacag 66027
Query: 315 gtggtcca 322
||||||||
Sbjct: 66028 gtggtcca 66035
>gb|CH401209.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000046 genomic
scaffold, whole genome shotgun sequence
Length = 8607552
Score = 206 bits (104), Expect = 1e-050
Identities = 137/148 (92%)
Strand = Plus / Plus
Query: 112 cagtttccgtatgttcagcaacgaggacgttacaattggatcgtggatgcttgctatgaa 171
||||||||||||||||||||| ||||| ||||| |||||||| |||||||||||||||||
Sbjct: 2800197 cagtttccgtatgttcagcaatgaggatgttactattggatcctggatgcttgctatgaa 2800256
Query: 172 cgtcaaccatgagaacacacatgcactttgtgaacctgactgcacggagtcttcaattgc 231
||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||
Sbjct: 2800257 cgtcaaccatgagaacacacatgcactttgttcacctgagtgcacagagtcttcaattgc 2800316
Query: 232 tgtttgggacatcccaaaatgctcaggt 259
||||||||| || |||||||| ||||||
Sbjct: 2800317 tgtttgggatattccaaaatgttcaggt 2800344
Score = 135 bits (68), Expect = 3e-029
Identities = 101/112 (90%)
Strand = Plus / Plus
Query: 3 atgagccccaatcctttttactcggatcacaatacttccttcatgcatatgggccaattt 62
||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 2799490 atgagccacaatcctttttgctcggatcagaatacttccttcatgcatatgggcctattt 2799549
Query: 63 atgctttatcagctgacgtggtggctagcttggttgcattgcgaaacaacag 114
| ||||||||||| || |||||||| ||||||||||| ||| | ||||||||
Sbjct: 2799550 acgctttatcagccgatgtggtggcaagcttggttgccttgaggaacaacag 2799601
Score = 56.0 bits (28), Expect = 3e-005
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 255 caggtctatgccacccagaggtaaaaatgctagagctccatgaaagaaaagaatgcacag 314
|||| ||||||||||| |||||||| ||||| ||||| ||| ||| || ||||| ||||
Sbjct: 2800730 cagggctatgccacccggaggtaaagatgctggagcttcatcgaaggaaggaatgtacag 2800789
Query: 315 gtggtcca 322
||||||||
Sbjct: 2800790 gtggtcca 2800797
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 206 bits (104), Expect = 1e-050
Identities = 137/148 (92%)
Strand = Plus / Plus
Query: 112 cagtttccgtatgttcagcaacgaggacgttacaattggatcgtggatgcttgctatgaa 171
||||||||||||||||||||| ||||| ||||| |||||||| |||||||||||||||||
Sbjct: 2800197 cagtttccgtatgttcagcaatgaggatgttactattggatcctggatgcttgctatgaa 2800256
Query: 172 cgtcaaccatgagaacacacatgcactttgtgaacctgactgcacggagtcttcaattgc 231
||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||
Sbjct: 2800257 cgtcaaccatgagaacacacatgcactttgttcacctgagtgcacagagtcttcaattgc 2800316
Query: 232 tgtttgggacatcccaaaatgctcaggt 259
||||||||| || |||||||| ||||||
Sbjct: 2800317 tgtttgggatattccaaaatgttcaggt 2800344
Score = 135 bits (68), Expect = 3e-029
Identities = 101/112 (90%)
Strand = Plus / Plus
Query: 3 atgagccccaatcctttttactcggatcacaatacttccttcatgcatatgggccaattt 62
||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 2799490 atgagccacaatcctttttgctcggatcagaatacttccttcatgcatatgggcctattt 2799549
Query: 63 atgctttatcagctgacgtggtggctagcttggttgcattgcgaaacaacag 114
| ||||||||||| || |||||||| ||||||||||| ||| | ||||||||
Sbjct: 2799550 acgctttatcagccgatgtggtggcaagcttggttgccttgaggaacaacag 2799601
Score = 56.0 bits (28), Expect = 3e-005
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 255 caggtctatgccacccagaggtaaaaatgctagagctccatgaaagaaaagaatgcacag 314
|||| ||||||||||| |||||||| ||||| ||||| ||| ||| || ||||| ||||
Sbjct: 2800730 cagggctatgccacccggaggtaaagatgctggagcttcatcgaaggaaggaatgtacag 2800789
Query: 315 gtggtcca 322
||||||||
Sbjct: 2800790 gtggtcca 2800797
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 206 bits (104), Expect = 1e-050
Identities = 137/148 (92%)
Strand = Plus / Plus
Query: 112 cagtttccgtatgttcagcaacgaggacgttacaattggatcgtggatgcttgctatgaa 171
||||||||||||||||||||| ||||| ||||| |||||||| |||||||||||||||||
Sbjct: 2905289 cagtttccgtatgttcagcaatgaggatgttactattggatcctggatgcttgctatgaa 2905348
Query: 172 cgtcaaccatgagaacacacatgcactttgtgaacctgactgcacggagtcttcaattgc 231
||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||
Sbjct: 2905349 cgtcaaccatgagaacacacatgcactttgttcacctgagtgcacagagtcttcaattgc 2905408
Query: 232 tgtttgggacatcccaaaatgctcaggt 259
||||||||| || |||||||| ||||||
Sbjct: 2905409 tgtttgggatattccaaaatgttcaggt 2905436
Score = 135 bits (68), Expect = 3e-029
Identities = 101/112 (90%)
Strand = Plus / Plus
Query: 3 atgagccccaatcctttttactcggatcacaatacttccttcatgcatatgggccaattt 62
||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 2904582 atgagccacaatcctttttgctcggatcagaatacttccttcatgcatatgggcctattt 2904641
Query: 63 atgctttatcagctgacgtggtggctagcttggttgcattgcgaaacaacag 114
| ||||||||||| || |||||||| ||||||||||| ||| | ||||||||
Sbjct: 2904642 acgctttatcagccgatgtggtggcaagcttggttgccttgaggaacaacag 2904693
Score = 56.0 bits (28), Expect = 3e-005
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 255 caggtctatgccacccagaggtaaaaatgctagagctccatgaaagaaaagaatgcacag 314
|||| ||||||||||| |||||||| ||||| ||||| ||| ||| || ||||| ||||
Sbjct: 2905822 cagggctatgccacccggaggtaaagatgctggagcttcatcgaaggaaggaatgtacag 2905881
Query: 315 gtggtcca 322
||||||||
Sbjct: 2905882 gtggtcca 2905889
>gb|AZ129915.1|AZ129915 OSJNBb0080B16r CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone OSJNBb0080B16r, DNA
sequence
Length = 641
Score = 123 bits (62), Expect = 1e-025
Identities = 99/112 (88%)
Strand = Plus / Plus
Query: 3 atgagccccaatcctttttactcggatcacaatacttccttcatgcatatgggccaattt 62
||||||| ||||||||| | ||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 172 atgagccacaatcctttntgctcggatcagaatacttccttcatgcatatgggcctattt 231
Query: 63 atgctttatcagctgacgtggtggctagcttggttgcattgcgaaacaacag 114
| ||| ||||||| || |||||||| ||||||||||| ||| | ||||||||
Sbjct: 232 acgctntatcagccgatgtggtggcaagcttggttgccttgaggaacaacag 283
>gb|AQ574531.1|AQ574531 nbxb0085L11f CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0085L11f, DNA
sequence
Length = 688
Score = 111 bits (56), Expect = 5e-022
Identities = 77/84 (91%)
Strand = Plus / Minus
Query: 3 atgagccccaatcctttttactcggatcacaatacttccttcatgcatatgggccaattt 62
||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 84 atgagccacaatcctttttgctcggatcagaatacttccttcatgcatatgggcctattt 25
Query: 63 atgctttatcagctgacgtggtgg 86
| ||||||||||| || |||||||
Sbjct: 24 acgctttatcagccgatgtggtgg 1
>dbj|AP006533.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OSJNBa0085L11
Length = 148142
Score = 105 bits (53), Expect = 3e-020
Identities = 68/73 (93%)
Strand = Plus / Plus
Query: 3 atgagccccaatcctttttactcggatcacaatacttccttcatgcatatgggccaattt 62
||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 148063 atgagccacaatcctttttgctcggatcagaatacttccttcatgcatatgggcctattt 148122
Query: 63 atgctttatcagc 75
| |||||||||||
Sbjct: 148123 acgctttatcagc 148135
>gb|AACV01000611.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg000611, whole
genome shotgun sequence
Length = 13520
Score = 42.1 bits (21), Expect = 0.38
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 641 tgttgtatagaagattagaag 661
|||||||||||||||||||||
Sbjct: 1618 tgttgtatagaagattagaag 1638
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 42.1 bits (21), Expect = 0.38
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 641 tgttgtatagaagattagaag 661
|||||||||||||||||||||
Sbjct: 8673934 tgttgtatagaagattagaag 8673914
>ref|NT_036312.3| Oryza sativa (japonica cultivar-group)
Length = 10050053
Score = 42.1 bits (21), Expect = 0.38
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 641 tgttgtatagaagattagaag 661
|||||||||||||||||||||
Sbjct: 8673774 tgttgtatagaagattagaag 8673754
>dbj|AP002525.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0462H08
Length = 139152
Score = 42.1 bits (21), Expect = 0.38
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 641 tgttgtatagaagattagaag 661
|||||||||||||||||||||
Sbjct: 108347 tgttgtatagaagattagaag 108327
>gb|CH401164.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000001 genomic
scaffold, whole genome shotgun sequence
Length = 11616395
Score = 42.1 bits (21), Expect = 0.38
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 641 tgttgtatagaagattagaag 661
|||||||||||||||||||||
Sbjct: 8714051 tgttgtatagaagattagaag 8714031
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 42.1 bits (21), Expect = 0.38
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 641 tgttgtatagaagattagaag 661
|||||||||||||||||||||
Sbjct: 8714051 tgttgtatagaagattagaag 8714031
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 42.1 bits (21), Expect = 0.38
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 641 tgttgtatagaagattagaag 661
|||||||||||||||||||||
Sbjct: 8676152 tgttgtatagaagattagaag 8676132
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 930,792
Number of Sequences: 438736
Number of extensions: 930792
Number of successful extensions: 4077
Number of sequences better than 0.5: 19
Number of HSP's better than 0.5 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3965
Number of HSP's gapped (non-prelim): 112
length of query: 667
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 646
effective length of database: 2,791,206,460
effective search space: 1803119373160
effective search space used: 1803119373160
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)