BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 4574602.2.1
(1248 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AQ328301.1|AQ328301 nbxb0042F12f CUGI Rice BAC Library O... 345 4e-092
dbj|AB006188.3| Oryza sativa (japonica cultivar-group) mRNA... 345 4e-092
dbj|AB026998.1| Oryza sativa (japonica cultivar-group) mRNA... 345 4e-092
dbj|D55713.1| Oryza sativa (japonica cultivar-group) mRNA f... 345 4e-092
dbj|AK100973.1| Oryza sativa (japonica cultivar-group) cDNA... 345 4e-092
gb|AACV01002038.1| Oryza sativa (japonica cultivar-group) c... 345 4e-092
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 345 4e-092
ref|NM_192471.1| Oryza sativa (japonica cultivar-group), p... 345 4e-092
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 345 4e-092
dbj|AP003291.3| Oryza sativa (japonica cultivar-group) geno... 345 4e-092
dbj|AP004364.4| Oryza sativa (japonica cultivar-group) geno... 345 4e-092
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 345 4e-092
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 345 4e-092
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 345 4e-092
gb|CV723702.1|CV723702 root--04-H23.g1 Rice root lambda pha... 216 2e-053
gb|D46335.1|D46335 RICS10944A Rice green shoot Oryza sativa... 174 7e-041
gb|AU102124.1|AU102124 AU102124 Rice callus Oryza sativa (j... 170 1e-039
gb|D22311.1|D22311 RICC10728A Rice callus Oryza sativa (jap... 168 5e-039
gb|C73106.1|C73106 C73106 Rice panicle at flowering stage O... 165 7e-038
gb|BF889433.1|BF889433 EST002 Magnaporthe grisea infected 1... 137 2e-029
dbj|AK111415.1| Oryza sativa (japonica cultivar-group) cDNA... 100 4e-018
gb|AACV01002727.1| Oryza sativa (japonica cultivar-group) c... 100 4e-018
ref|NM_190698.1| Oryza sativa (japonica cultivar-group), p... 100 4e-018
dbj|AP003287.3| Oryza sativa (japonica cultivar-group) geno... 100 4e-018
dbj|AP003794.4| Oryza sativa (japonica cultivar-group) geno... 100 4e-018
dbj|AK102369.1| Oryza sativa (japonica cultivar-group) cDNA... 96 6e-017
gb|AACV01009410.1| Oryza sativa (japonica cultivar-group) c... 96 6e-017
ref|XM_472006.1| Oryza sativa (japonica cultivar-group), p... 96 6e-017
ref|NT_079857.2| Oryza sativa (japonica cultivar-group) 96 6e-017
gb|CH401189.1| Oryza sativa (japonica cultivar-group) chrom... 96 6e-017
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 96 6e-017
emb|AL662963.3|OSJN00163 Oryza sativa genomic DNA, chromoso... 96 6e-017
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 96 6e-017
gb|CV723079.1|CV723079 root--02-G23.g1 Rice root lambda pha... 80 3e-012
dbj|AK106178.1| Oryza sativa (japonica cultivar-group) cDNA... 80 3e-012
ref|NM_192104.1| Oryza sativa (japonica cultivar-group), p... 80 3e-012
dbj|AP003455.2| Oryza sativa (japonica cultivar-group) geno... 80 3e-012
dbj|AB110201.1| Oryza sativa (japonica cultivar-group) mRNA... 80 3e-012
gb|CB661162.1|CB661162 OSJNEd03K16.f OSJNEd Oryza sativa (j... 76 5e-011
gb|CB661163.1|CB661163 OSJNEd03K16.r OSJNEd Oryza sativa (j... 76 5e-011
dbj|AB003195.1| Oryza sativa (japonica cultivar-group) mRNA... 76 5e-011
dbj|D55711.1| Oryza sativa (japonica cultivar-group) mRNA f... 76 5e-011
dbj|AK058878.1| Oryza sativa (japonica cultivar-group) cDNA... 76 5e-011
dbj|AK099172.1| Oryza sativa (japonica cultivar-group) cDNA... 76 5e-011
dbj|AK103976.1| Oryza sativa (japonica cultivar-group) cDNA... 76 5e-011
dbj|AK104120.1| Oryza sativa (japonica cultivar-group) cDNA... 76 5e-011
dbj|AK119310.1| Oryza sativa (japonica cultivar-group) cDNA... 76 5e-011
ref|NM_190699.1| Oryza sativa (japonica cultivar-group), p... 76 5e-011
gb|AACV01002130.1| Oryza sativa (japonica cultivar-group) c... 74 2e-010
dbj|AK111427.1| Oryza sativa (japonica cultivar-group) cDNA... 68 1e-008
gb|AACV01002143.1| Oryza sativa (japonica cultivar-group) c... 68 1e-008
ref|NM_192142.1| Oryza sativa (japonica cultivar-group), p... 68 1e-008
dbj|AP003450.3| Oryza sativa (japonica cultivar-group) geno... 68 1e-008
dbj|AP004349.3| Oryza sativa (japonica cultivar-group) geno... 66 5e-008
gb|AACV01015901.1| Oryza sativa (japonica cultivar-group) c... 66 5e-008
ref|XM_477712.1| Oryza sativa (japonica cultivar-group), mRNA 66 5e-008
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 66 5e-008
gb|CH401223.1| Oryza sativa (japonica cultivar-group) chrom... 66 5e-008
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 66 5e-008
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 66 5e-008
dbj|AP002881.2| Oryza sativa (japonica cultivar-group) geno... 60 3e-006
dbj|AK062603.1| Oryza sativa (japonica cultivar-group) cDNA... 60 3e-006
dbj|AP003206.4| Oryza sativa (japonica cultivar-group) geno... 60 3e-006
gb|AACV01000830.1| Oryza sativa (japonica cultivar-group) c... 60 3e-006
ref|XM_462852.1| Oryza sativa (japonica cultivar-group), p... 60 3e-006
ref|NT_036323.3| Oryza sativa (japonica cultivar-group) 60 3e-006
gb|CH401164.1| Oryza sativa (japonica cultivar-group) chrom... 60 3e-006
dbj|AK064281.1| Oryza sativa (japonica cultivar-group) cDNA... 58 1e-005
dbj|AK106678.1| Oryza sativa (japonica cultivar-group) cDNA... 58 1e-005
gb|AACV01023804.1| Oryza sativa (japonica cultivar-group) c... 58 1e-005
gb|CH401271.1| Oryza sativa (japonica cultivar-group) chrom... 58 1e-005
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 58 1e-005
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 58 1e-005
gb|AC134045.2| Oryza sativa (japonica cultivar-group) chrom... 58 1e-005
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 58 1e-005
gb|AU064547.2|AU064547 AU064547 Rice panicle shorter than 3... 56 5e-005
gb|D22210.1|D22210 RICC10501A Rice callus Oryza sativa (jap... 52 7e-004
dbj|AK102505.1| Oryza sativa (japonica cultivar-group) cDNA... 52 7e-004
gb|AACV01023805.1| Oryza sativa (japonica cultivar-group) c... 52 7e-004
gb|D41935.1|D41935 RICS4960A Rice shoot Oryza sativa (japon... 50 0.003
dbj|AP004339.3| Oryza sativa (japonica cultivar-group) geno... 48 0.012
dbj|AK073595.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.012
dbj|AK101155.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.012
dbj|AK102649.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.012
dbj|AK111717.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.012
gb|AACV01016848.1| Oryza sativa (japonica cultivar-group) c... 48 0.012
ref|NM_193094.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.012
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.012
dbj|AP003759.2| Oryza sativa (japonica cultivar-group) geno... 46 0.046
dbj|AP004070.3| Oryza sativa (japonica cultivar-group) geno... 46 0.046
dbj|AP004342.5| Oryza sativa (japonica cultivar-group) geno... 46 0.046
gb|AACV01003688.1| Oryza sativa (japonica cultivar-group) c... 46 0.046
gb|AACV01003689.1| Oryza sativa (japonica cultivar-group) c... 46 0.046
gb|AACV01025812.1| Oryza sativa (japonica cultivar-group) C... 46 0.046
ref|XM_476387.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.046
ref|NT_079879.2| Oryza sativa (japonica cultivar-group) 46 0.046
ref|NT_107178.1| Oryza sativa (japonica cultivar-group) 46 0.046
gb|CH401330.1| Oryza sativa (japonica cultivar-group) scaff... 46 0.046
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.046
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.046
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 46 0.046
gb|AQ327182.1|AQ327182 nbxb0040F05f CUGI Rice BAC Library O... 44 0.18
gb|CF305855.1|CF305855 HDA1--01-O23.g1 OsHDAC1-overexpressi... 44 0.18
>gb|AQ328301.1|AQ328301 nbxb0042F12f CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0042F12f, DNA sequence
Length = 609
Score = 345 bits (174), Expect = 4e-092
Identities = 351/410 (85%)
Strand = Plus / Minus
Query: 676 tcgtcgtagtgcgccgactggccgttctcgatgtcgaagtcgatgccgtcgagcacggcg 735
|||||||||||||||| | |||| |||||||||||||||||| |||||| |||||||||
Sbjct: 505 tcgtcgtagtgcgccgggttgccggtctcgatgtcgaagtcgacgccgtccagcacggcg 446
Query: 736 gcgccgagagggcgggacgagccgctgccgcccaggaagttgtcccacaggtagtcggcc 795
||||||| || ||||| ||||||||| |||||||||| ||||||||||||||||
Sbjct: 445 tcgccgagcggccgggagcccgagctgccgccgaggaagttgttccacaggtagtcggcc 386
Query: 796 acgctgttggcgtcgtcggtggaggagaggccgtagctgccgctggcgccgccgatggag 855
||| | |||||| | |||||| || || |||||||||||| | |||||||||||||
Sbjct: 385 acgtcctgggcgtcctgggtggacgacagcccgtagctgccggcgccgccgccgatggac 326
Query: 856 aggagcaccttgatgcccagcgactggcaggtctggatgtcgctgctctggccggtgcag 915
|||| ||||||| ||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 325 aggatgaccttgacgcccagcgactggcacgtctggatgtccgagctctggccggtgcag 266
Query: 916 ctgccggagccggggtcgcagtgtccggcgaggttgagaactggggtctgtccgttgccg 975
| |||||||| || |||||||| |||||||||||||| || |||||||| |||||||||
Sbjct: 265 ccgccggagcttggttcgcagtgcccggcgaggttgaggacaggggtctggccgttgccg 206
Query: 976 aaggttgtgaggaacgcgatgttgacgtaggcgtagagcccggagttgcaggcgtccgcc 1035
||||| ||||||| |||| ||||||| ||||| || ||||||||||||||||| |||
Sbjct: 205 aaggtgctgaggaaggcgaccatgacgtacgcgtataggccggagttgcaggcgtcggcc 146
Query: 1036 aggctgccttcgttgccgttctggccccagtacactgcgatgttgccggc 1085
|||||||| |||| ||||||||||||||||||||| ||||||| ||||||
Sbjct: 145 aggctgccctcgtcgccgttctggccccagtacacggcgatgtcgccggc 96
>dbj|AB006188.3| Oryza sativa (japonica cultivar-group) mRNA for acidic class III
chitinase OsChib3a, complete cds
Length = 1217
Score = 345 bits (174), Expect = 4e-092
Identities = 351/410 (85%)
Strand = Plus / Minus
Query: 676 tcgtcgtagtgcgccgactggccgttctcgatgtcgaagtcgatgccgtcgagcacggcg 735
|||||||||||||||| | |||| |||||||||||||||||| |||||| |||||||||
Sbjct: 549 tcgtcgtagtgcgccgggttgccggtctcgatgtcgaagtcgacgccgtccagcacggcg 490
Query: 736 gcgccgagagggcgggacgagccgctgccgcccaggaagttgtcccacaggtagtcggcc 795
||||||| || ||||| ||||||||| |||||||||| ||||||||||||||||
Sbjct: 489 tcgccgagcggccgggagcccgagctgccgccgaggaagttgttccacaggtagtcggcc 430
Query: 796 acgctgttggcgtcgtcggtggaggagaggccgtagctgccgctggcgccgccgatggag 855
||| | |||||| | |||||| || || |||||||||||| | |||||||||||||
Sbjct: 429 acgtcctgggcgtcctgggtggacgacagcccgtagctgccggcgccgccgccgatggac 370
Query: 856 aggagcaccttgatgcccagcgactggcaggtctggatgtcgctgctctggccggtgcag 915
|||| ||||||| ||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 369 aggatgaccttgacgcccagcgactggcacgtctggatgtccgagctctggccggtgcag 310
Query: 916 ctgccggagccggggtcgcagtgtccggcgaggttgagaactggggtctgtccgttgccg 975
| |||||||| || |||||||| |||||||||||||| || |||||||| |||||||||
Sbjct: 309 ccgccggagcttggttcgcagtgcccggcgaggttgaggacaggggtctggccgttgccg 250
Query: 976 aaggttgtgaggaacgcgatgttgacgtaggcgtagagcccggagttgcaggcgtccgcc 1035
||||| ||||||| |||| ||||||| ||||| || ||||||||||||||||| |||
Sbjct: 249 aaggtgctgaggaaggcgaccatgacgtacgcgtataggccggagttgcaggcgtcggcc 190
Query: 1036 aggctgccttcgttgccgttctggccccagtacactgcgatgttgccggc 1085
|||||||| |||| ||||||||||||||||||||| ||||||| ||||||
Sbjct: 189 aggctgccctcgtcgccgttctggccccagtacacggcgatgtcgccggc 140
Score = 216 bits (109), Expect = 2e-053
Identities = 175/197 (88%)
Strand = Plus / Minus
Query: 442 acgccgaggtagaagctccccgcggtgatgctgctggtccacgtgttccatgcgttcacc 501
||||||| |||||||||||| ||| ||| || || ||||||||||||||| ||| |||||
Sbjct: 801 acgccgacgtagaagctcccggcgctgacgccgccggtccacgtgttccacgcgctcacc 742
Query: 502 aggttggtgtcgtccccgttggcgtacgcgcacccggggttgttgtagaactgtatccac 561
|||||| || |||| |||||||||||| |||| |||||||||||||| || | ||||
Sbjct: 741 aggttgctggcgtcgccgttggcgtactggcacggcgggttgttgtagaattgcacccac 682
Query: 562 acgttgtcgaactggcccgtctgcagcgccggccccagcgacgcgtccgggtaggggcac 621
||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acgctgtcgaacagccccgtctgcagcgccggccccagcgacgcgtccgggtaggggcac 622
Query: 622 tgcggcgccgccgtcag 638
|||||||||||||||||
Sbjct: 621 tgcggcgccgccgtcag 605
Score = 99.6 bits (50), Expect = 4e-018
Identities = 71/78 (91%)
Strand = Plus / Minus
Query: 273 tcagacgctgcccttcacctggctgctgtagttgttctgcacgtcgttaaagcggtccca 332
||||||||||| |||||||||| ||||| |||||||||||||||||| || |||| |||
Sbjct: 970 tcagacgctgctcttcacctggttgctgaagttgttctgcacgtcgtagaaccggttcca 911
Query: 333 caccatgatgccgccgta 350
||||||||||||||||||
Sbjct: 910 caccatgatgccgccgta 893
>dbj|AB026998.1| Oryza sativa (japonica cultivar-group) mRNA for acidic class III
chitinase OsChib3a, complete cds
Length = 1143
Score = 345 bits (174), Expect = 4e-092
Identities = 351/410 (85%)
Strand = Plus / Minus
Query: 676 tcgtcgtagtgcgccgactggccgttctcgatgtcgaagtcgatgccgtcgagcacggcg 735
|||||||||||||||| | |||| |||||||||||||||||| |||||| |||||||||
Sbjct: 498 tcgtcgtagtgcgccgggttgccggtctcgatgtcgaagtcgacgccgtccagcacggcg 439
Query: 736 gcgccgagagggcgggacgagccgctgccgcccaggaagttgtcccacaggtagtcggcc 795
||||||| || ||||| ||||||||| |||||||||| ||||||||||||||||
Sbjct: 438 tcgccgagcggccgggagcccgagctgccgccgaggaagttgttccacaggtagtcggcc 379
Query: 796 acgctgttggcgtcgtcggtggaggagaggccgtagctgccgctggcgccgccgatggag 855
||| | |||||| | |||||| || || |||||||||||| | |||||||||||||
Sbjct: 378 acgtcctgggcgtcctgggtggacgacagcccgtagctgccggcgccgccgccgatggac 319
Query: 856 aggagcaccttgatgcccagcgactggcaggtctggatgtcgctgctctggccggtgcag 915
|||| ||||||| ||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 318 aggatgaccttgacgcccagcgactggcacgtctggatgtccgagctctggccggtgcag 259
Query: 916 ctgccggagccggggtcgcagtgtccggcgaggttgagaactggggtctgtccgttgccg 975
| |||||||| || |||||||| |||||||||||||| || |||||||| |||||||||
Sbjct: 258 ccgccggagcttggttcgcagtgcccggcgaggttgaggacaggggtctggccgttgccg 199
Query: 976 aaggttgtgaggaacgcgatgttgacgtaggcgtagagcccggagttgcaggcgtccgcc 1035
||||| ||||||| |||| ||||||| ||||| || ||||||||||||||||| |||
Sbjct: 198 aaggtgctgaggaaggcgaccatgacgtacgcgtataggccggagttgcaggcgtcggcc 139
Query: 1036 aggctgccttcgttgccgttctggccccagtacactgcgatgttgccggc 1085
|||||||| |||| ||||||||||||||||||||| ||||||| ||||||
Sbjct: 138 aggctgccctcgtcgccgttctggccccagtacacggcgatgtcgccggc 89
Score = 216 bits (109), Expect = 2e-053
Identities = 175/197 (88%)
Strand = Plus / Minus
Query: 442 acgccgaggtagaagctccccgcggtgatgctgctggtccacgtgttccatgcgttcacc 501
||||||| |||||||||||| ||| ||| || || ||||||||||||||| ||| |||||
Sbjct: 750 acgccgacgtagaagctcccggcgctgacgccgccggtccacgtgttccacgcgctcacc 691
Query: 502 aggttggtgtcgtccccgttggcgtacgcgcacccggggttgttgtagaactgtatccac 561
|||||| || |||| |||||||||||| |||| |||||||||||||| || | ||||
Sbjct: 690 aggttgctggcgtcgccgttggcgtactggcacggcgggttgttgtagaattgcacccac 631
Query: 562 acgttgtcgaactggcccgtctgcagcgccggccccagcgacgcgtccgggtaggggcac 621
||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 acgctgtcgaacagccccgtctgcagcgccggccccagcgacgcgtccgggtaggggcac 571
Query: 622 tgcggcgccgccgtcag 638
|||||||||||||||||
Sbjct: 570 tgcggcgccgccgtcag 554
Score = 99.6 bits (50), Expect = 4e-018
Identities = 71/78 (91%)
Strand = Plus / Minus
Query: 273 tcagacgctgcccttcacctggctgctgtagttgttctgcacgtcgttaaagcggtccca 332
||||||||||| |||||||||| ||||| |||||||||||||||||| || |||| |||
Sbjct: 919 tcagacgctgctcttcacctggttgctgaagttgttctgcacgtcgtagaaccggttcca 860
Query: 333 caccatgatgccgccgta 350
||||||||||||||||||
Sbjct: 859 caccatgatgccgccgta 842
>dbj|D55713.1| Oryza sativa (japonica cultivar-group) mRNA for chitinase, complete
cds
Length = 1195
Score = 345 bits (174), Expect = 4e-092
Identities = 351/410 (85%)
Strand = Plus / Minus
Query: 676 tcgtcgtagtgcgccgactggccgttctcgatgtcgaagtcgatgccgtcgagcacggcg 735
|||||||||||||||| | |||| |||||||||||||||||| |||||| |||||||||
Sbjct: 527 tcgtcgtagtgcgccgggttgccggtctcgatgtcgaagtcgacgccgtccagcacggcg 468
Query: 736 gcgccgagagggcgggacgagccgctgccgcccaggaagttgtcccacaggtagtcggcc 795
||||||| || ||||| ||||||||| |||||||||| ||||||||||||||||
Sbjct: 467 tcgccgagcggccgggagcccgagctgccgccgaggaagttgttccacaggtagtcggcc 408
Query: 796 acgctgttggcgtcgtcggtggaggagaggccgtagctgccgctggcgccgccgatggag 855
||| | |||||| | |||||| || || |||||||||||| | |||||||||||||
Sbjct: 407 acgtcctgggcgtcctgggtggacgacagcccgtagctgccggcgccgccgccgatggac 348
Query: 856 aggagcaccttgatgcccagcgactggcaggtctggatgtcgctgctctggccggtgcag 915
|||| ||||||| ||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 347 aggatgaccttgacgcccagcgactggcacgtctggatgtccgagctctggccggtgcag 288
Query: 916 ctgccggagccggggtcgcagtgtccggcgaggttgagaactggggtctgtccgttgccg 975
| |||||||| || |||||||| |||||||||||||| || |||||||| |||||||||
Sbjct: 287 ccgccggagcttggttcgcagtgcccggcgaggttgaggacaggggtctggccgttgccg 228
Query: 976 aaggttgtgaggaacgcgatgttgacgtaggcgtagagcccggagttgcaggcgtccgcc 1035
||||| ||||||| |||| ||||||| ||||| || ||||||||||||||||| |||
Sbjct: 227 aaggtgctgaggaaggcgaccatgacgtacgcgtataggccggagttgcaggcgtcggcc 168
Query: 1036 aggctgccttcgttgccgttctggccccagtacactgcgatgttgccggc 1085
|||||||| |||| ||||||||||||||||||||| ||||||| ||||||
Sbjct: 167 aggctgccctcgtcgccgttctggccccagtacacggcgatgtcgccggc 118
Score = 216 bits (109), Expect = 2e-053
Identities = 175/197 (88%)
Strand = Plus / Minus
Query: 442 acgccgaggtagaagctccccgcggtgatgctgctggtccacgtgttccatgcgttcacc 501
||||||| |||||||||||| ||| ||| || || ||||||||||||||| ||| |||||
Sbjct: 779 acgccgacgtagaagctcccggcgctgacgccgccggtccacgtgttccacgcgctcacc 720
Query: 502 aggttggtgtcgtccccgttggcgtacgcgcacccggggttgttgtagaactgtatccac 561
|||||| || |||| |||||||||||| |||| |||||||||||||| || | ||||
Sbjct: 719 aggttgctggcgtcgccgttggcgtactggcacggcgggttgttgtagaattgcacccac 660
Query: 562 acgttgtcgaactggcccgtctgcagcgccggccccagcgacgcgtccgggtaggggcac 621
||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 acgctgtcgaacagccccgtctgcagcgccggccccagcgacgcgtccgggtaggggcac 600
Query: 622 tgcggcgccgccgtcag 638
|||||||||||||||||
Sbjct: 599 tgcggcgccgccgtcag 583
Score = 99.6 bits (50), Expect = 4e-018
Identities = 71/78 (91%)
Strand = Plus / Minus
Query: 273 tcagacgctgcccttcacctggctgctgtagttgttctgcacgtcgttaaagcggtccca 332
||||||||||| |||||||||| ||||| |||||||||||||||||| || |||| |||
Sbjct: 948 tcagacgctgctcttcacctggttgctgaagttgttctgcacgtcgtagaaccggttcca 889
Query: 333 caccatgatgccgccgta 350
||||||||||||||||||
Sbjct: 888 caccatgatgccgccgta 871
>dbj|AK100973.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023143D03, full
insert sequence
Length = 1237
Score = 345 bits (174), Expect = 4e-092
Identities = 351/410 (85%)
Strand = Plus / Minus
Query: 676 tcgtcgtagtgcgccgactggccgttctcgatgtcgaagtcgatgccgtcgagcacggcg 735
|||||||||||||||| | |||| |||||||||||||||||| |||||| |||||||||
Sbjct: 564 tcgtcgtagtgcgccgggttgccggtctcgatgtcgaagtcgacgccgtccagcacggcg 505
Query: 736 gcgccgagagggcgggacgagccgctgccgcccaggaagttgtcccacaggtagtcggcc 795
||||||| || ||||| ||||||||| |||||||||| ||||||||||||||||
Sbjct: 504 tcgccgagcggccgggagcccgagctgccgccgaggaagttgttccacaggtagtcggcc 445
Query: 796 acgctgttggcgtcgtcggtggaggagaggccgtagctgccgctggcgccgccgatggag 855
||| | |||||| | |||||| || || |||||||||||| | |||||||||||||
Sbjct: 444 acgtcctgggcgtcctgggtggacgacagcccgtagctgccggcgccgccgccgatggac 385
Query: 856 aggagcaccttgatgcccagcgactggcaggtctggatgtcgctgctctggccggtgcag 915
|||| ||||||| ||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 384 aggatgaccttgacgcccagcgactggcacgtctggatgtccgagctctggccggtgcag 325
Query: 916 ctgccggagccggggtcgcagtgtccggcgaggttgagaactggggtctgtccgttgccg 975
| |||||||| || |||||||| |||||||||||||| || |||||||| |||||||||
Sbjct: 324 ccgccggagcttggttcgcagtgcccggcgaggttgaggacaggggtctggccgttgccg 265
Query: 976 aaggttgtgaggaacgcgatgttgacgtaggcgtagagcccggagttgcaggcgtccgcc 1035
||||| ||||||| |||| ||||||| ||||| || ||||||||||||||||| |||
Sbjct: 264 aaggtgctgaggaaggcgaccatgacgtacgcgtataggccggagttgcaggcgtcggcc 205
Query: 1036 aggctgccttcgttgccgttctggccccagtacactgcgatgttgccggc 1085
|||||||| |||| ||||||||||||||||||||| ||||||| ||||||
Sbjct: 204 aggctgccctcgtcgccgttctggccccagtacacggcgatgtcgccggc 155
Score = 216 bits (109), Expect = 2e-053
Identities = 175/197 (88%)
Strand = Plus / Minus
Query: 442 acgccgaggtagaagctccccgcggtgatgctgctggtccacgtgttccatgcgttcacc 501
||||||| |||||||||||| ||| ||| || || ||||||||||||||| ||| |||||
Sbjct: 816 acgccgacgtagaagctcccggcgctgacgccgccggtccacgtgttccacgcgctcacc 757
Query: 502 aggttggtgtcgtccccgttggcgtacgcgcacccggggttgttgtagaactgtatccac 561
|||||| || |||| |||||||||||| |||| |||||||||||||| || | ||||
Sbjct: 756 aggttgctggcgtcgccgttggcgtactggcacggcgggttgttgtagaattgcacccac 697
Query: 562 acgttgtcgaactggcccgtctgcagcgccggccccagcgacgcgtccgggtaggggcac 621
||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 acgctgtcgaacagccccgtctgcagcgccggccccagcgacgcgtccgggtaggggcac 637
Query: 622 tgcggcgccgccgtcag 638
|||||||||||||||||
Sbjct: 636 tgcggcgccgccgtcag 620
Score = 99.6 bits (50), Expect = 4e-018
Identities = 71/78 (91%)
Strand = Plus / Minus
Query: 273 tcagacgctgcccttcacctggctgctgtagttgttctgcacgtcgttaaagcggtccca 332
||||||||||| |||||||||| ||||| |||||||||||||||||| || |||| |||
Sbjct: 985 tcagacgctgctcttcacctggttgctgaagttgttctgcacgtcgtagaaccggttcca 926
Query: 333 caccatgatgccgccgta 350
||||||||||||||||||
Sbjct: 925 caccatgatgccgccgta 908
>gb|AACV01002038.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002038, whole
genome shotgun sequence
Length = 16859
Score = 345 bits (174), Expect = 4e-092
Identities = 351/410 (85%)
Strand = Plus / Minus
Query: 676 tcgtcgtagtgcgccgactggccgttctcgatgtcgaagtcgatgccgtcgagcacggcg 735
|||||||||||||||| | |||| |||||||||||||||||| |||||| |||||||||
Sbjct: 15099 tcgtcgtagtgcgccgggttgccggtctcgatgtcgaagtcgacgccgtccagcacggcg 15040
Query: 736 gcgccgagagggcgggacgagccgctgccgcccaggaagttgtcccacaggtagtcggcc 795
||||||| || ||||| ||||||||| |||||||||| ||||||||||||||||
Sbjct: 15039 tcgccgagcggccgggagcccgagctgccgccgaggaagttgttccacaggtagtcggcc 14980
Query: 796 acgctgttggcgtcgtcggtggaggagaggccgtagctgccgctggcgccgccgatggag 855
||| | |||||| | |||||| || || |||||||||||| | |||||||||||||
Sbjct: 14979 acgtcctgggcgtcctgggtggacgacagcccgtagctgccggcgccgccgccgatggac 14920
Query: 856 aggagcaccttgatgcccagcgactggcaggtctggatgtcgctgctctggccggtgcag 915
|||| ||||||| ||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 14919 aggatgaccttgacgcccagcgactggcacgtctggatgtccgagctctggccggtgcag 14860
Query: 916 ctgccggagccggggtcgcagtgtccggcgaggttgagaactggggtctgtccgttgccg 975
| |||||||| || |||||||| |||||||||||||| || |||||||| |||||||||
Sbjct: 14859 ccgccggagcttggttcgcagtgcccggcgaggttgaggacaggggtctggccgttgccg 14800
Query: 976 aaggttgtgaggaacgcgatgttgacgtaggcgtagagcccggagttgcaggcgtccgcc 1035
||||| ||||||| |||| ||||||| ||||| || ||||||||||||||||| |||
Sbjct: 14799 aaggtgctgaggaaggcgaccatgacgtacgcgtataggccggagttgcaggcgtcggcc 14740
Query: 1036 aggctgccttcgttgccgttctggccccagtacactgcgatgttgccggc 1085
|||||||| |||| ||||||||||||||||||||| ||||||| ||||||
Sbjct: 14739 aggctgccctcgtcgccgttctggccccagtacacggcgatgtcgccggc 14690
Score = 202 bits (102), Expect = 3e-049
Identities = 175/198 (88%), Gaps = 1/198 (0%)
Strand = Plus / Minus
Query: 442 acgccgaggtagaagctccccgcggtgatgctgctggt-ccacgtgttccatgcgttcac 500
||||||| |||||||||||| ||| ||| || || ||| |||||||||||| ||| ||||
Sbjct: 15352 acgccgacgtagaagctcccggcgctgacgccgccggttccacgtgttccacgcgctcac 15293
Query: 501 caggttggtgtcgtccccgttggcgtacgcgcacccggggttgttgtagaactgtatcca 560
||||||| || |||| |||||||||||| |||| |||||||||||||| || | |||
Sbjct: 15292 caggttgctggcgtcgccgttggcgtactggcacggcgggttgttgtagaattgcaccca 15233
Query: 561 cacgttgtcgaactggcccgtctgcagcgccggccccagcgacgcgtccgggtaggggca 620
|||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15232 cacgctgtcgaacagccccgtctgcagcgccggccccagcgacgcgtccgggtaggggca 15173
Query: 621 ctgcggcgccgccgtcag 638
||||||||||||||||||
Sbjct: 15172 ctgcggcgccgccgtcag 15155
Score = 99.6 bits (50), Expect = 4e-018
Identities = 71/78 (91%)
Strand = Plus / Minus
Query: 273 tcagacgctgcccttcacctggctgctgtagttgttctgcacgtcgttaaagcggtccca 332
||||||||||| |||||||||| ||||| |||||||||||||||||| || |||| |||
Sbjct: 15521 tcagacgctgctcttcacctggttgctgaagttgttctgcacgtcgtagaaccggttcca 15462
Query: 333 caccatgatgccgccgta 350
||||||||||||||||||
Sbjct: 15461 caccatgatgccgccgta 15444
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 345 bits (174), Expect = 4e-092
Identities = 351/410 (85%)
Strand = Plus / Minus
Query: 676 tcgtcgtagtgcgccgactggccgttctcgatgtcgaagtcgatgccgtcgagcacggcg 735
|||||||||||||||| | |||| |||||||||||||||||| |||||| |||||||||
Sbjct: 26959974 tcgtcgtagtgcgccgggttgccggtctcgatgtcgaagtcgacgccgtccagcacggcg 26959915
Query: 736 gcgccgagagggcgggacgagccgctgccgcccaggaagttgtcccacaggtagtcggcc 795
||||||| || ||||| ||||||||| |||||||||| ||||||||||||||||
Sbjct: 26959914 tcgccgagcggccgggagcccgagctgccgccgaggaagttgttccacaggtagtcggcc 26959855
Query: 796 acgctgttggcgtcgtcggtggaggagaggccgtagctgccgctggcgccgccgatggag 855
||| | |||||| | |||||| || || |||||||||||| | |||||||||||||
Sbjct: 26959854 acgtcctgggcgtcctgggtggacgacagcccgtagctgccggcgccgccgccgatggac 26959795
Query: 856 aggagcaccttgatgcccagcgactggcaggtctggatgtcgctgctctggccggtgcag 915
|||| ||||||| ||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 26959794 aggatgaccttgacgcccagcgactggcacgtctggatgtccgagctctggccggtgcag 26959735
Query: 916 ctgccggagccggggtcgcagtgtccggcgaggttgagaactggggtctgtccgttgccg 975
| |||||||| || |||||||| |||||||||||||| || |||||||| |||||||||
Sbjct: 26959734 ccgccggagcttggttcgcagtgcccggcgaggttgaggacaggggtctggccgttgccg 26959675
Query: 976 aaggttgtgaggaacgcgatgttgacgtaggcgtagagcccggagttgcaggcgtccgcc 1035
||||| ||||||| |||| ||||||| ||||| || ||||||||||||||||| |||
Sbjct: 26959674 aaggtgctgaggaaggcgaccatgacgtacgcgtataggccggagttgcaggcgtcggcc 26959615
Query: 1036 aggctgccttcgttgccgttctggccccagtacactgcgatgttgccggc 1085
|||||||| |||| ||||||||||||||||||||| ||||||| ||||||
Sbjct: 26959614 aggctgccctcgtcgccgttctggccccagtacacggcgatgtcgccggc 26959565
Score = 216 bits (109), Expect = 2e-053
Identities = 175/197 (88%)
Strand = Plus / Minus
Query: 442 acgccgaggtagaagctccccgcggtgatgctgctggtccacgtgttccatgcgttcacc 501
||||||| |||||||||||| ||| ||| || || ||||||||||||||| ||| |||||
Sbjct: 26960226 acgccgacgtagaagctcccggcgctgacgccgccggtccacgtgttccacgcgctcacc 26960167
Query: 502 aggttggtgtcgtccccgttggcgtacgcgcacccggggttgttgtagaactgtatccac 561
|||||| || |||| |||||||||||| |||| |||||||||||||| || | ||||
Sbjct: 26960166 aggttgctggcgtcgccgttggcgtactggcacggcgggttgttgtagaattgcacccac 26960107
Query: 562 acgttgtcgaactggcccgtctgcagcgccggccccagcgacgcgtccgggtaggggcac 621
||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26960106 acgctgtcgaacagccccgtctgcagcgccggccccagcgacgcgtccgggtaggggcac 26960047
Query: 622 tgcggcgccgccgtcag 638
|||||||||||||||||
Sbjct: 26960046 tgcggcgccgccgtcag 26960030
Score = 99.6 bits (50), Expect = 4e-018
Identities = 204/250 (81%), Gaps = 4/250 (1%)
Strand = Plus / Minus
Query: 702 ctcgatgtcgaagtcgatgccgtcgagcacggcggcgccgagagggcgggacgagccgct 761
||||||||||||||||||||||||||| |||||| ||||||| || ||||||||| |
Sbjct: 37310236 ctcgatgtcgaagtcgatgccgtcgaggacggcgtcgccgaggggacgggacgaggagga 37310177
Query: 762 gccgcccaggaagttgtcccacaggtagtcggccacgctgttgg-cgtcgtcggtggagg 820
|||||| |||||||||| ||| ||||| |||||| ||| || |||| ||| ||| |
Sbjct: 37310176 gccgccgaggaagttgttccagaggtacatggccac-ctgccgggcgtcaccgggggatg 37310118
Query: 821 agaggccgtagctgccgctggcgccgccgatggagaggagcaccttgatgcc-cagcgac 879
||||||||||||||||| | |||||||||||||||| || ||||| | || | ||| |
Sbjct: 37310117 agaggccgtagctgccgtcgccgccgccgatggagagcaggaccttcaccccgcggcg-c 37310059
Query: 880 tggcaggtctggatgtcgctgctctggccggtgcagctgccggagccggggtcgcagtgt 939
||||| | ||||||| |||||||||||||||||| ||| || |||| ||||||||
Sbjct: 37310058 tggcacgcgcggatgtccttgctctggccggtgcagccgcccgacgcgggatcgcagtgg 37309999
Query: 940 ccggcgaggt 949
| ||||||||
Sbjct: 37309998 ctggcgaggt 37309989
Score = 99.6 bits (50), Expect = 4e-018
Identities = 71/78 (91%)
Strand = Plus / Minus
Query: 273 tcagacgctgcccttcacctggctgctgtagttgttctgcacgtcgttaaagcggtccca 332
||||||||||| |||||||||| ||||| |||||||||||||||||| || |||| |||
Sbjct: 26960395 tcagacgctgctcttcacctggttgctgaagttgttctgcacgtcgtagaaccggttcca 26960336
Query: 333 caccatgatgccgccgta 350
||||||||||||||||||
Sbjct: 26960335 caccatgatgccgccgta 26960318
Score = 79.8 bits (40), Expect = 3e-012
Identities = 138/168 (82%), Gaps = 2/168 (1%)
Strand = Plus / Plus
Query: 700 ttctcgatgtcgaagtcgatgccgtcgagcacggcggcgccgagagggcgggacgagccg 759
||||| |||||||||||||||||||||||||| ||| ||||||| ||||| || |
Sbjct: 28429507 ttctctatgtcgaagtcgatgccgtcgagcaccgcgtcgccgagggggcgcgagtccgag 28429566
Query: 760 ctgccgcccaggaagttgtcccacaggtagtcggccacgctgttggcgtcgtcggtggag 819
|||||||| |||||| ||| ||| ||||||||||| |||| |||||||||| ||||
Sbjct: 28429567 ctgccgccgaggaaggtgttccagaggtagtcggcgacgccacgcgcgtcgtcggcggag 28429626
Query: 820 gagaggccgtagctg-ccgctggcgccgccgatggagaggagcacctt 866
|||||| ||| ||| || || ||||||||| |||||||||||||||
Sbjct: 28429627 gagagggagta-ctgacctctctcgccgccgagggagaggagcacctt 28429673
Score = 75.8 bits (38), Expect = 5e-011
Identities = 88/102 (86%), Gaps = 2/102 (1%)
Strand = Plus / Minus
Query: 538 gggttgttgtagaactgtatccacacgttgtcgaactggcccgt-ctgcagcgccggccc 596
||||||||||||||||| | |||||||| ||||||| |||| || ||| ||||| ||
Sbjct: 37314192 gggttgttgtagaactgcacccacacgtagtcgaacaggccggtgctg-agcgcgacgcc 37314134
Query: 597 cagcgacgcgtccgggtaggggcactgcggcgccgccgtcag 638
||||||||||||||| |||||||||| ||||||||||||||
Sbjct: 37314133 gagcgacgcgtccgggaaggggcactgtggcgccgccgtcag 37314092
Score = 67.9 bits (34), Expect = 1e-008
Identities = 49/54 (90%)
Strand = Plus / Minus
Query: 706 atgtcgaagtcgatgccgtcgagcacggcggcgccgagagggcgggacgagccg 759
|||||||| |||| |||||||||||||||| ||||||| |||||||||| ||||
Sbjct: 28609549 atgtcgaaatcgacgccgtcgagcacggcgtcgccgagcgggcgggacgcgccg 28609496
Score = 63.9 bits (32), Expect = 2e-007
Identities = 77/92 (83%)
Strand = Plus / Minus
Query: 538 gggttgttgtagaactgtatccacacgttgtcgaactggcccgtctgcagcgccggcccc 597
||||||||||||||||| | |||||||| ||||||| | ||||| ||||||| |
Sbjct: 28609747 gggttgttgtagaactgcacccacacgtggtcgaacagccccgtggcgagcgccgcggcg 28609688
Query: 598 agcgacgcgtccgggtaggggcactgcggcgc 629
|| |||||||||||||| ||||||||||||||
Sbjct: 28609687 agggacgcgtccgggtacgggcactgcggcgc 28609656
Score = 60.0 bits (30), Expect = 3e-006
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 702 ctcgatgtcgaagtcgatgccgtcgagcacggcggcgccgag 743
||||||||||||||||| |||||||||||| ||| |||||||
Sbjct: 11205010 ctcgatgtcgaagtcgacgccgtcgagcaccgcgtcgccgag 11204969
Score = 58.0 bits (29), Expect = 1e-005
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 604 gcgtccgggtaggggcactgcggcgccgccgtcagca 640
||||||||||| |||||||||||||||||||| ||||
Sbjct: 28429408 gcgtccgggtacgggcactgcggcgccgccgtgagca 28429444
Score = 56.0 bits (28), Expect = 5e-005
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 696 gccgttctcgatgtcgaagtcgatgccgtcgagcacggcggcgccgag 743
|||| ||||||||||||||||||||||||| | |||||| |||||||
Sbjct: 37314013 gccgctctcgatgtcgaagtcgatgccgtccatgacggcgtcgccgag 37313966
Score = 56.0 bits (28), Expect = 5e-005
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 1040 tgccttcgttgccgttctggccccagtacactgcgatgttgccggcgc 1087
|||| ||||||||||||||||||||||| | ||||||| ||||||||
Sbjct: 37313669 tgccctcgttgccgttctggccccagtagatcgcgatgtcgccggcgc 37313622
Score = 56.0 bits (28), Expect = 5e-005
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 842 cgccgccgatggagaggagcaccttgatgcccagcgactggcag 885
||||||||||||||||||| ||||||| ||||| |||||||||
Sbjct: 11204858 cgccgccgatggagaggaggaccttgacgcccatggactggcag 11204815
Score = 50.1 bits (25), Expect = 0.003
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 1040 tgccttcgttgccgttctggccccagtacactgcgatgttg 1080
|||| ||| ||||||||||||||||||| || |||||||||
Sbjct: 28609209 tgccctcgctgccgttctggccccagtagacggcgatgttg 28609169
Score = 50.1 bits (25), Expect = 0.003
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 538 gggttgttgtagaactgtatccacacgttgtcgaactggcc 578
||||||||||||||||| | |||||||| ||||||| ||||
Sbjct: 11205201 gggttgttgtagaactgcacccacacgtagtcgaacaggcc 11205161
Score = 50.1 bits (25), Expect = 0.003
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 1023 gcaggcgtccgccaggctgccttcgttgccgttctggccccagta 1067
||||| ||| || ||| |||| |||||||||||||||||||||||
Sbjct: 11204677 gcaggtgtcggcgagggtgccctcgttgccgttctggccccagta 11204633
Score = 46.1 bits (23), Expect = 0.046
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 1052 cgttctggccccagtacactgcgatgttgccggcg 1086
||||||||||||||||||| |||||| |||||||
Sbjct: 37309886 cgttctggccccagtacacggcgatgccgccggcg 37309852
>ref|NM_192471.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 906
Score = 345 bits (174), Expect = 4e-092
Identities = 351/410 (85%)
Strand = Plus / Minus
Query: 676 tcgtcgtagtgcgccgactggccgttctcgatgtcgaagtcgatgccgtcgagcacggcg 735
|||||||||||||||| | |||| |||||||||||||||||| |||||| |||||||||
Sbjct: 485 tcgtcgtagtgcgccgggttgccggtctcgatgtcgaagtcgacgccgtccagcacggcg 426
Query: 736 gcgccgagagggcgggacgagccgctgccgcccaggaagttgtcccacaggtagtcggcc 795
||||||| || ||||| ||||||||| |||||||||| ||||||||||||||||
Sbjct: 425 tcgccgagcggccgggagcccgagctgccgccgaggaagttgttccacaggtagtcggcc 366
Query: 796 acgctgttggcgtcgtcggtggaggagaggccgtagctgccgctggcgccgccgatggag 855
||| | |||||| | |||||| || || |||||||||||| | |||||||||||||
Sbjct: 365 acgtcctgggcgtcctgggtggacgacagcccgtagctgccggcgccgccgccgatggac 306
Query: 856 aggagcaccttgatgcccagcgactggcaggtctggatgtcgctgctctggccggtgcag 915
|||| ||||||| ||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 305 aggatgaccttgacgcccagcgactggcacgtctggatgtccgagctctggccggtgcag 246
Query: 916 ctgccggagccggggtcgcagtgtccggcgaggttgagaactggggtctgtccgttgccg 975
| |||||||| || |||||||| |||||||||||||| || |||||||| |||||||||
Sbjct: 245 ccgccggagcttggttcgcagtgcccggcgaggttgaggacaggggtctggccgttgccg 186
Query: 976 aaggttgtgaggaacgcgatgttgacgtaggcgtagagcccggagttgcaggcgtccgcc 1035
||||| ||||||| |||| ||||||| ||||| || ||||||||||||||||| |||
Sbjct: 185 aaggtgctgaggaaggcgaccatgacgtacgcgtataggccggagttgcaggcgtcggcc 126
Query: 1036 aggctgccttcgttgccgttctggccccagtacactgcgatgttgccggc 1085
|||||||| |||| ||||||||||||||||||||| ||||||| ||||||
Sbjct: 125 aggctgccctcgtcgccgttctggccccagtacacggcgatgtcgccggc 76
Score = 216 bits (109), Expect = 2e-053
Identities = 175/197 (88%)
Strand = Plus / Minus
Query: 442 acgccgaggtagaagctccccgcggtgatgctgctggtccacgtgttccatgcgttcacc 501
||||||| |||||||||||| ||| ||| || || ||||||||||||||| ||| |||||
Sbjct: 737 acgccgacgtagaagctcccggcgctgacgccgccggtccacgtgttccacgcgctcacc 678
Query: 502 aggttggtgtcgtccccgttggcgtacgcgcacccggggttgttgtagaactgtatccac 561
|||||| || |||| |||||||||||| |||| |||||||||||||| || | ||||
Sbjct: 677 aggttgctggcgtcgccgttggcgtactggcacggcgggttgttgtagaattgcacccac 618
Query: 562 acgttgtcgaactggcccgtctgcagcgccggccccagcgacgcgtccgggtaggggcac 621
||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 acgctgtcgaacagccccgtctgcagcgccggccccagcgacgcgtccgggtaggggcac 558
Query: 622 tgcggcgccgccgtcag 638
|||||||||||||||||
Sbjct: 557 tgcggcgccgccgtcag 541
Score = 99.6 bits (50), Expect = 4e-018
Identities = 71/78 (91%)
Strand = Plus / Minus
Query: 273 tcagacgctgcccttcacctggctgctgtagttgttctgcacgtcgttaaagcggtccca 332
||||||||||| |||||||||| ||||| |||||||||||||||||| || |||| |||
Sbjct: 906 tcagacgctgctcttcacctggttgctgaagttgttctgcacgtcgtagaaccggttcca 847
Query: 333 caccatgatgccgccgta 350
||||||||||||||||||
Sbjct: 846 caccatgatgccgccgta 829
>ref|NT_079927.2| Oryza sativa (japonica cultivar-group)
Length = 14818989
Score = 345 bits (174), Expect = 4e-092
Identities = 351/410 (85%)
Strand = Plus / Minus
Query: 676 tcgtcgtagtgcgccgactggccgttctcgatgtcgaagtcgatgccgtcgagcacggcg 735
|||||||||||||||| | |||| |||||||||||||||||| |||||| |||||||||
Sbjct: 1407357 tcgtcgtagtgcgccgggttgccggtctcgatgtcgaagtcgacgccgtccagcacggcg 1407298
Query: 736 gcgccgagagggcgggacgagccgctgccgcccaggaagttgtcccacaggtagtcggcc 795
||||||| || ||||| ||||||||| |||||||||| ||||||||||||||||
Sbjct: 1407297 tcgccgagcggccgggagcccgagctgccgccgaggaagttgttccacaggtagtcggcc 1407238
Query: 796 acgctgttggcgtcgtcggtggaggagaggccgtagctgccgctggcgccgccgatggag 855
||| | |||||| | |||||| || || |||||||||||| | |||||||||||||
Sbjct: 1407237 acgtcctgggcgtcctgggtggacgacagcccgtagctgccggcgccgccgccgatggac 1407178
Query: 856 aggagcaccttgatgcccagcgactggcaggtctggatgtcgctgctctggccggtgcag 915
|||| ||||||| ||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 1407177 aggatgaccttgacgcccagcgactggcacgtctggatgtccgagctctggccggtgcag 1407118
Query: 916 ctgccggagccggggtcgcagtgtccggcgaggttgagaactggggtctgtccgttgccg 975
| |||||||| || |||||||| |||||||||||||| || |||||||| |||||||||
Sbjct: 1407117 ccgccggagcttggttcgcagtgcccggcgaggttgaggacaggggtctggccgttgccg 1407058
Query: 976 aaggttgtgaggaacgcgatgttgacgtaggcgtagagcccggagttgcaggcgtccgcc 1035
||||| ||||||| |||| ||||||| ||||| || ||||||||||||||||| |||
Sbjct: 1407057 aaggtgctgaggaaggcgaccatgacgtacgcgtataggccggagttgcaggcgtcggcc 1406998
Query: 1036 aggctgccttcgttgccgttctggccccagtacactgcgatgttgccggc 1085
|||||||| |||| ||||||||||||||||||||| ||||||| ||||||
Sbjct: 1406997 aggctgccctcgtcgccgttctggccccagtacacggcgatgtcgccggc 1406948
Score = 216 bits (109), Expect = 2e-053
Identities = 175/197 (88%)
Strand = Plus / Minus
Query: 442 acgccgaggtagaagctccccgcggtgatgctgctggtccacgtgttccatgcgttcacc 501
||||||| |||||||||||| ||| ||| || || ||||||||||||||| ||| |||||
Sbjct: 1407609 acgccgacgtagaagctcccggcgctgacgccgccggtccacgtgttccacgcgctcacc 1407550
Query: 502 aggttggtgtcgtccccgttggcgtacgcgcacccggggttgttgtagaactgtatccac 561
|||||| || |||| |||||||||||| |||| |||||||||||||| || | ||||
Sbjct: 1407549 aggttgctggcgtcgccgttggcgtactggcacggcgggttgttgtagaattgcacccac 1407490
Query: 562 acgttgtcgaactggcccgtctgcagcgccggccccagcgacgcgtccgggtaggggcac 621
||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1407489 acgctgtcgaacagccccgtctgcagcgccggccccagcgacgcgtccgggtaggggcac 1407430
Query: 622 tgcggcgccgccgtcag 638
|||||||||||||||||
Sbjct: 1407429 tgcggcgccgccgtcag 1407413
Score = 99.6 bits (50), Expect = 4e-018
Identities = 204/250 (81%), Gaps = 4/250 (1%)
Strand = Plus / Minus
Query: 702 ctcgatgtcgaagtcgatgccgtcgagcacggcggcgccgagagggcgggacgagccgct 761
||||||||||||||||||||||||||| |||||| ||||||| || ||||||||| |
Sbjct: 11757619 ctcgatgtcgaagtcgatgccgtcgaggacggcgtcgccgaggggacgggacgaggagga 11757560
Query: 762 gccgcccaggaagttgtcccacaggtagtcggccacgctgttgg-cgtcgtcggtggagg 820
|||||| |||||||||| ||| ||||| |||||| ||| || |||| ||| ||| |
Sbjct: 11757559 gccgccgaggaagttgttccagaggtacatggccac-ctgccgggcgtcaccgggggatg 11757501
Query: 821 agaggccgtagctgccgctggcgccgccgatggagaggagcaccttgatgcc-cagcgac 879
||||||||||||||||| | |||||||||||||||| || ||||| | || | ||| |
Sbjct: 11757500 agaggccgtagctgccgtcgccgccgccgatggagagcaggaccttcaccccgcggcg-c 11757442
Query: 880 tggcaggtctggatgtcgctgctctggccggtgcagctgccggagccggggtcgcagtgt 939
||||| | ||||||| |||||||||||||||||| ||| || |||| ||||||||
Sbjct: 11757441 tggcacgcgcggatgtccttgctctggccggtgcagccgcccgacgcgggatcgcagtgg 11757382
Query: 940 ccggcgaggt 949
| ||||||||
Sbjct: 11757381 ctggcgaggt 11757372
Score = 99.6 bits (50), Expect = 4e-018
Identities = 71/78 (91%)
Strand = Plus / Minus
Query: 273 tcagacgctgcccttcacctggctgctgtagttgttctgcacgtcgttaaagcggtccca 332
||||||||||| |||||||||| ||||| |||||||||||||||||| || |||| |||
Sbjct: 1407778 tcagacgctgctcttcacctggttgctgaagttgttctgcacgtcgtagaaccggttcca 1407719
Query: 333 caccatgatgccgccgta 350
||||||||||||||||||
Sbjct: 1407718 caccatgatgccgccgta 1407701
Score = 79.8 bits (40), Expect = 3e-012
Identities = 138/168 (82%), Gaps = 2/168 (1%)
Strand = Plus / Plus
Query: 700 ttctcgatgtcgaagtcgatgccgtcgagcacggcggcgccgagagggcgggacgagccg 759
||||| |||||||||||||||||||||||||| ||| ||||||| ||||| || |
Sbjct: 2876890 ttctctatgtcgaagtcgatgccgtcgagcaccgcgtcgccgagggggcgcgagtccgag 2876949
Query: 760 ctgccgcccaggaagttgtcccacaggtagtcggccacgctgttggcgtcgtcggtggag 819
|||||||| |||||| ||| ||| ||||||||||| |||| |||||||||| ||||
Sbjct: 2876950 ctgccgccgaggaaggtgttccagaggtagtcggcgacgccacgcgcgtcgtcggcggag 2877009
Query: 820 gagaggccgtagctg-ccgctggcgccgccgatggagaggagcacctt 866
|||||| ||| ||| || || ||||||||| |||||||||||||||
Sbjct: 2877010 gagagggagta-ctgacctctctcgccgccgagggagaggagcacctt 2877056
Score = 75.8 bits (38), Expect = 5e-011
Identities = 88/102 (86%), Gaps = 2/102 (1%)
Strand = Plus / Minus
Query: 538 gggttgttgtagaactgtatccacacgttgtcgaactggcccgt-ctgcagcgccggccc 596
||||||||||||||||| | |||||||| ||||||| |||| || ||| ||||| ||
Sbjct: 11761575 gggttgttgtagaactgcacccacacgtagtcgaacaggccggtgctg-agcgcgacgcc 11761517
Query: 597 cagcgacgcgtccgggtaggggcactgcggcgccgccgtcag 638
||||||||||||||| |||||||||| ||||||||||||||
Sbjct: 11761516 gagcgacgcgtccgggaaggggcactgtggcgccgccgtcag 11761475
Score = 67.9 bits (34), Expect = 1e-008
Identities = 49/54 (90%)
Strand = Plus / Minus
Query: 706 atgtcgaagtcgatgccgtcgagcacggcggcgccgagagggcgggacgagccg 759
|||||||| |||| |||||||||||||||| ||||||| |||||||||| ||||
Sbjct: 3056932 atgtcgaaatcgacgccgtcgagcacggcgtcgccgagcgggcgggacgcgccg 3056879
Score = 63.9 bits (32), Expect = 2e-007
Identities = 77/92 (83%)
Strand = Plus / Minus
Query: 538 gggttgttgtagaactgtatccacacgttgtcgaactggcccgtctgcagcgccggcccc 597
||||||||||||||||| | |||||||| ||||||| | ||||| ||||||| |
Sbjct: 3057130 gggttgttgtagaactgcacccacacgtggtcgaacagccccgtggcgagcgccgcggcg 3057071
Query: 598 agcgacgcgtccgggtaggggcactgcggcgc 629
|| |||||||||||||| ||||||||||||||
Sbjct: 3057070 agggacgcgtccgggtacgggcactgcggcgc 3057039
Score = 58.0 bits (29), Expect = 1e-005
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 604 gcgtccgggtaggggcactgcggcgccgccgtcagca 640
||||||||||| |||||||||||||||||||| ||||
Sbjct: 2876791 gcgtccgggtacgggcactgcggcgccgccgtgagca 2876827
Score = 56.0 bits (28), Expect = 5e-005
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 696 gccgttctcgatgtcgaagtcgatgccgtcgagcacggcggcgccgag 743
|||| ||||||||||||||||||||||||| | |||||| |||||||
Sbjct: 11761396 gccgctctcgatgtcgaagtcgatgccgtccatgacggcgtcgccgag 11761349
Score = 56.0 bits (28), Expect = 5e-005
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 1040 tgccttcgttgccgttctggccccagtacactgcgatgttgccggcgc 1087
|||| ||||||||||||||||||||||| | ||||||| ||||||||
Sbjct: 11761052 tgccctcgttgccgttctggccccagtagatcgcgatgtcgccggcgc 11761005
Score = 50.1 bits (25), Expect = 0.003
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 1040 tgccttcgttgccgttctggccccagtacactgcgatgttg 1080
|||| ||| ||||||||||||||||||| || |||||||||
Sbjct: 3056592 tgccctcgctgccgttctggccccagtagacggcgatgttg 3056552
Score = 46.1 bits (23), Expect = 0.046
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 1052 cgttctggccccagtacactgcgatgttgccggcg 1086
||||||||||||||||||| |||||| |||||||
Sbjct: 11757269 cgttctggccccagtacacggcgatgccgccggcg 11757235
>dbj|AP003291.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0684E06
Length = 147004
Score = 345 bits (174), Expect = 4e-092
Identities = 351/410 (85%)
Strand = Plus / Minus
Query: 676 tcgtcgtagtgcgccgactggccgttctcgatgtcgaagtcgatgccgtcgagcacggcg 735
|||||||||||||||| | |||| |||||||||||||||||| |||||| |||||||||
Sbjct: 114953 tcgtcgtagtgcgccgggttgccggtctcgatgtcgaagtcgacgccgtccagcacggcg 114894
Query: 736 gcgccgagagggcgggacgagccgctgccgcccaggaagttgtcccacaggtagtcggcc 795
||||||| || ||||| ||||||||| |||||||||| ||||||||||||||||
Sbjct: 114893 tcgccgagcggccgggagcccgagctgccgccgaggaagttgttccacaggtagtcggcc 114834
Query: 796 acgctgttggcgtcgtcggtggaggagaggccgtagctgccgctggcgccgccgatggag 855
||| | |||||| | |||||| || || |||||||||||| | |||||||||||||
Sbjct: 114833 acgtcctgggcgtcctgggtggacgacagcccgtagctgccggcgccgccgccgatggac 114774
Query: 856 aggagcaccttgatgcccagcgactggcaggtctggatgtcgctgctctggccggtgcag 915
|||| ||||||| ||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 114773 aggatgaccttgacgcccagcgactggcacgtctggatgtccgagctctggccggtgcag 114714
Query: 916 ctgccggagccggggtcgcagtgtccggcgaggttgagaactggggtctgtccgttgccg 975
| |||||||| || |||||||| |||||||||||||| || |||||||| |||||||||
Sbjct: 114713 ccgccggagcttggttcgcagtgcccggcgaggttgaggacaggggtctggccgttgccg 114654
Query: 976 aaggttgtgaggaacgcgatgttgacgtaggcgtagagcccggagttgcaggcgtccgcc 1035
||||| ||||||| |||| ||||||| ||||| || ||||||||||||||||| |||
Sbjct: 114653 aaggtgctgaggaaggcgaccatgacgtacgcgtataggccggagttgcaggcgtcggcc 114594
Query: 1036 aggctgccttcgttgccgttctggccccagtacactgcgatgttgccggc 1085
|||||||| |||| ||||||||||||||||||||| ||||||| ||||||
Sbjct: 114593 aggctgccctcgtcgccgttctggccccagtacacggcgatgtcgccggc 114544
Score = 216 bits (109), Expect = 2e-053
Identities = 175/197 (88%)
Strand = Plus / Minus
Query: 442 acgccgaggtagaagctccccgcggtgatgctgctggtccacgtgttccatgcgttcacc 501
||||||| |||||||||||| ||| ||| || || ||||||||||||||| ||| |||||
Sbjct: 115205 acgccgacgtagaagctcccggcgctgacgccgccggtccacgtgttccacgcgctcacc 115146
Query: 502 aggttggtgtcgtccccgttggcgtacgcgcacccggggttgttgtagaactgtatccac 561
|||||| || |||| |||||||||||| |||| |||||||||||||| || | ||||
Sbjct: 115145 aggttgctggcgtcgccgttggcgtactggcacggcgggttgttgtagaattgcacccac 115086
Query: 562 acgttgtcgaactggcccgtctgcagcgccggccccagcgacgcgtccgggtaggggcac 621
||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115085 acgctgtcgaacagccccgtctgcagcgccggccccagcgacgcgtccgggtaggggcac 115026
Query: 622 tgcggcgccgccgtcag 638
|||||||||||||||||
Sbjct: 115025 tgcggcgccgccgtcag 115009
Score = 99.6 bits (50), Expect = 4e-018
Identities = 71/78 (91%)
Strand = Plus / Minus
Query: 273 tcagacgctgcccttcacctggctgctgtagttgttctgcacgtcgttaaagcggtccca 332
||||||||||| |||||||||| ||||| |||||||||||||||||| || |||| |||
Sbjct: 115374 tcagacgctgctcttcacctggttgctgaagttgttctgcacgtcgtagaaccggttcca 115315
Query: 333 caccatgatgccgccgta 350
||||||||||||||||||
Sbjct: 115314 caccatgatgccgccgta 115297
>dbj|AP004364.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0445H04
Length = 202821
Score = 345 bits (174), Expect = 4e-092
Identities = 351/410 (85%)
Strand = Plus / Minus
Query: 676 tcgtcgtagtgcgccgactggccgttctcgatgtcgaagtcgatgccgtcgagcacggcg 735
|||||||||||||||| | |||| |||||||||||||||||| |||||| |||||||||
Sbjct: 60949 tcgtcgtagtgcgccgggttgccggtctcgatgtcgaagtcgacgccgtccagcacggcg 60890
Query: 736 gcgccgagagggcgggacgagccgctgccgcccaggaagttgtcccacaggtagtcggcc 795
||||||| || ||||| ||||||||| |||||||||| ||||||||||||||||
Sbjct: 60889 tcgccgagcggccgggagcccgagctgccgccgaggaagttgttccacaggtagtcggcc 60830
Query: 796 acgctgttggcgtcgtcggtggaggagaggccgtagctgccgctggcgccgccgatggag 855
||| | |||||| | |||||| || || |||||||||||| | |||||||||||||
Sbjct: 60829 acgtcctgggcgtcctgggtggacgacagcccgtagctgccggcgccgccgccgatggac 60770
Query: 856 aggagcaccttgatgcccagcgactggcaggtctggatgtcgctgctctggccggtgcag 915
|||| ||||||| ||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 60769 aggatgaccttgacgcccagcgactggcacgtctggatgtccgagctctggccggtgcag 60710
Query: 916 ctgccggagccggggtcgcagtgtccggcgaggttgagaactggggtctgtccgttgccg 975
| |||||||| || |||||||| |||||||||||||| || |||||||| |||||||||
Sbjct: 60709 ccgccggagcttggttcgcagtgcccggcgaggttgaggacaggggtctggccgttgccg 60650
Query: 976 aaggttgtgaggaacgcgatgttgacgtaggcgtagagcccggagttgcaggcgtccgcc 1035
||||| ||||||| |||| ||||||| ||||| || ||||||||||||||||| |||
Sbjct: 60649 aaggtgctgaggaaggcgaccatgacgtacgcgtataggccggagttgcaggcgtcggcc 60590
Query: 1036 aggctgccttcgttgccgttctggccccagtacactgcgatgttgccggc 1085
|||||||| |||| ||||||||||||||||||||| ||||||| ||||||
Sbjct: 60589 aggctgccctcgtcgccgttctggccccagtacacggcgatgtcgccggc 60540
Score = 216 bits (109), Expect = 2e-053
Identities = 175/197 (88%)
Strand = Plus / Minus
Query: 442 acgccgaggtagaagctccccgcggtgatgctgctggtccacgtgttccatgcgttcacc 501
||||||| |||||||||||| ||| ||| || || ||||||||||||||| ||| |||||
Sbjct: 61201 acgccgacgtagaagctcccggcgctgacgccgccggtccacgtgttccacgcgctcacc 61142
Query: 502 aggttggtgtcgtccccgttggcgtacgcgcacccggggttgttgtagaactgtatccac 561
|||||| || |||| |||||||||||| |||| |||||||||||||| || | ||||
Sbjct: 61141 aggttgctggcgtcgccgttggcgtactggcacggcgggttgttgtagaattgcacccac 61082
Query: 562 acgttgtcgaactggcccgtctgcagcgccggccccagcgacgcgtccgggtaggggcac 621
||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61081 acgctgtcgaacagccccgtctgcagcgccggccccagcgacgcgtccgggtaggggcac 61022
Query: 622 tgcggcgccgccgtcag 638
|||||||||||||||||
Sbjct: 61021 tgcggcgccgccgtcag 61005
Score = 99.6 bits (50), Expect = 4e-018
Identities = 71/78 (91%)
Strand = Plus / Minus
Query: 273 tcagacgctgcccttcacctggctgctgtagttgttctgcacgtcgttaaagcggtccca 332
||||||||||| |||||||||| ||||| |||||||||||||||||| || |||| |||
Sbjct: 61370 tcagacgctgctcttcacctggttgctgaagttgttctgcacgtcgtagaaccggttcca 61311
Query: 333 caccatgatgccgccgta 350
||||||||||||||||||
Sbjct: 61310 caccatgatgccgccgta 61293
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 345 bits (174), Expect = 4e-092
Identities = 351/410 (85%)
Strand = Plus / Minus
Query: 676 tcgtcgtagtgcgccgactggccgttctcgatgtcgaagtcgatgccgtcgagcacggcg 735
|||||||||||||||| | |||| |||||||||||||||||| |||||| |||||||||
Sbjct: 1354679 tcgtcgtagtgcgccgggttgccggtctcgatgtcgaagtcgacgccgtccagcacggcg 1354620
Query: 736 gcgccgagagggcgggacgagccgctgccgcccaggaagttgtcccacaggtagtcggcc 795
||||||| || ||||| ||||||||| |||||||||| ||||||||||||||||
Sbjct: 1354619 tcgccgagcggccgggagcccgagctgccgccgaggaagttgttccacaggtagtcggcc 1354560
Query: 796 acgctgttggcgtcgtcggtggaggagaggccgtagctgccgctggcgccgccgatggag 855
||| | |||||| | |||||| || || |||||||||||| | |||||||||||||
Sbjct: 1354559 acgtcctgggcgtcctgggtggacgacagcccgtagctgccggcgccgccgccgatggac 1354500
Query: 856 aggagcaccttgatgcccagcgactggcaggtctggatgtcgctgctctggccggtgcag 915
|||| ||||||| ||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 1354499 aggatgaccttgacgcccagcgactggcacgtctggatgtccgagctctggccggtgcag 1354440
Query: 916 ctgccggagccggggtcgcagtgtccggcgaggttgagaactggggtctgtccgttgccg 975
| |||||||| || |||||||| |||||||||||||| || |||||||| |||||||||
Sbjct: 1354439 ccgccggagcttggttcgcagtgcccggcgaggttgaggacaggggtctggccgttgccg 1354380
Query: 976 aaggttgtgaggaacgcgatgttgacgtaggcgtagagcccggagttgcaggcgtccgcc 1035
||||| ||||||| |||| ||||||| ||||| || ||||||||||||||||| |||
Sbjct: 1354379 aaggtgctgaggaaggcgaccatgacgtacgcgtataggccggagttgcaggcgtcggcc 1354320
Query: 1036 aggctgccttcgttgccgttctggccccagtacactgcgatgttgccggc 1085
|||||||| |||| ||||||||||||||||||||| ||||||| ||||||
Sbjct: 1354319 aggctgccctcgtcgccgttctggccccagtacacggcgatgtcgccggc 1354270
Score = 202 bits (102), Expect = 3e-049
Identities = 175/198 (88%), Gaps = 1/198 (0%)
Strand = Plus / Minus
Query: 442 acgccgaggtagaagctccccgcggtgatgctgctggt-ccacgtgttccatgcgttcac 500
||||||| |||||||||||| ||| ||| || || ||| |||||||||||| ||| ||||
Sbjct: 1354932 acgccgacgtagaagctcccggcgctgacgccgccggttccacgtgttccacgcgctcac 1354873
Query: 501 caggttggtgtcgtccccgttggcgtacgcgcacccggggttgttgtagaactgtatcca 560
||||||| || |||| |||||||||||| |||| |||||||||||||| || | |||
Sbjct: 1354872 caggttgctggcgtcgccgttggcgtactggcacggcgggttgttgtagaattgcaccca 1354813
Query: 561 cacgttgtcgaactggcccgtctgcagcgccggccccagcgacgcgtccgggtaggggca 620
|||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1354812 cacgctgtcgaacagccccgtctgcagcgccggccccagcgacgcgtccgggtaggggca 1354753
Query: 621 ctgcggcgccgccgtcag 638
||||||||||||||||||
Sbjct: 1354752 ctgcggcgccgccgtcag 1354735
Score = 99.6 bits (50), Expect = 4e-018
Identities = 204/250 (81%), Gaps = 4/250 (1%)
Strand = Plus / Minus
Query: 702 ctcgatgtcgaagtcgatgccgtcgagcacggcggcgccgagagggcgggacgagccgct 761
||||||||||||||||||||||||||| |||||| ||||||| || ||||||||| |
Sbjct: 11433246 ctcgatgtcgaagtcgatgccgtcgaggacggcgtcgccgaggggacgggacgaggagga 11433187
Query: 762 gccgcccaggaagttgtcccacaggtagtcggccacgctgttgg-cgtcgtcggtggagg 820
|||||| |||||||||| ||| ||||| |||||| ||| || |||| ||| ||| |
Sbjct: 11433186 gccgccgaggaagttgttccagaggtacatggccac-ctgccgggcgtcaccgggggatg 11433128
Query: 821 agaggccgtagctgccgctggcgccgccgatggagaggagcaccttgatgcc-cagcgac 879
||||||||||||||||| | |||||||||||||||| || ||||| | || | ||| |
Sbjct: 11433127 agaggccgtagctgccgtcgccgccgccgatggagagcaggaccttcaccccgcggcg-c 11433069
Query: 880 tggcaggtctggatgtcgctgctctggccggtgcagctgccggagccggggtcgcagtgt 939
||||| | ||||||| |||||||||||||||||| ||| || |||| ||||||||
Sbjct: 11433068 tggcacgcgcggatgtccttgctctggccggtgcagccgcccgacgcgggatcgcagtgg 11433009
Query: 940 ccggcgaggt 949
| ||||||||
Sbjct: 11433008 ctggcgaggt 11432999
Score = 99.6 bits (50), Expect = 4e-018
Identities = 71/78 (91%)
Strand = Plus / Minus
Query: 273 tcagacgctgcccttcacctggctgctgtagttgttctgcacgtcgttaaagcggtccca 332
||||||||||| |||||||||| ||||| |||||||||||||||||| || |||| |||
Sbjct: 1355101 tcagacgctgctcttcacctggttgctgaagttgttctgcacgtcgtagaaccggttcca 1355042
Query: 333 caccatgatgccgccgta 350
||||||||||||||||||
Sbjct: 1355041 caccatgatgccgccgta 1355024
Score = 75.8 bits (38), Expect = 5e-011
Identities = 88/102 (86%), Gaps = 2/102 (1%)
Strand = Plus / Minus
Query: 538 gggttgttgtagaactgtatccacacgttgtcgaactggcccgt-ctgcagcgccggccc 596
||||||||||||||||| | |||||||| ||||||| |||| || ||| ||||| ||
Sbjct: 11437202 gggttgttgtagaactgcacccacacgtagtcgaacaggccggtgctg-agcgcgacgcc 11437144
Query: 597 cagcgacgcgtccgggtaggggcactgcggcgccgccgtcag 638
||||||||||||||| |||||||||| ||||||||||||||
Sbjct: 11437143 gagcgacgcgtccgggaaggggcactgtggcgccgccgtcag 11437102
Score = 73.8 bits (37), Expect = 2e-010
Identities = 139/169 (82%), Gaps = 3/169 (1%)
Strand = Plus / Plus
Query: 700 ttctcgatgtcgaagtcgatgccgtcgagca-cggcggcgccgagagggcgggacgagcc 758
||||| ||||||||||||||||||||||||| ||||| ||||||| ||||| ||
Sbjct: 2808966 ttctctatgtcgaagtcgatgccgtcgagcaccggcgtcgccgagggggcgcgagtccga 2809025
Query: 759 gctgccgcccaggaagttgtcccacaggtagtcggccacgctgttggcgtcgtcggtgga 818
||||||||| |||||| ||| ||| ||||||||||| |||| |||||||||| |||
Sbjct: 2809026 gctgccgccgaggaaggtgttccagaggtagtcggcgacgccacgcgcgtcgtcggcgga 2809085
Query: 819 ggagaggccgtagctg-ccgctggcgccgccgatggagaggagcacctt 866
||||||| ||| ||| || || ||||||||| |||||||||||||||
Sbjct: 2809086 ggagagggagta-ctgacctctctcgccgccgagggagaggagcacctt 2809133
Score = 67.9 bits (34), Expect = 1e-008
Identities = 49/54 (90%)
Strand = Plus / Minus
Query: 706 atgtcgaagtcgatgccgtcgagcacggcggcgccgagagggcgggacgagccg 759
|||||||| |||| |||||||||||||||| ||||||| |||||||||| ||||
Sbjct: 2995416 atgtcgaaatcgacgccgtcgagcacggcgtcgccgagcgggcgggacgcgccg 2995363
Score = 63.9 bits (32), Expect = 2e-007
Identities = 77/92 (83%)
Strand = Plus / Minus
Query: 538 gggttgttgtagaactgtatccacacgttgtcgaactggcccgtctgcagcgccggcccc 597
||||||||||||||||| | |||||||| ||||||| | ||||| ||||||| |
Sbjct: 2995614 gggttgttgtagaactgcacccacacgtggtcgaacagccccgtggcgagcgccgcggcg 2995555
Query: 598 agcgacgcgtccgggtaggggcactgcggcgc 629
|| |||||||||||||| ||||||||||||||
Sbjct: 2995554 agggacgcgtccgggtacgggcactgcggcgc 2995523
Score = 58.0 bits (29), Expect = 1e-005
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 604 gcgtccgggtaggggcactgcggcgccgccgtcagca 640
||||||||||| |||||||||||||||||||| ||||
Sbjct: 2808867 gcgtccgggtacgggcactgcggcgccgccgtgagca 2808903
Score = 56.0 bits (28), Expect = 5e-005
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 696 gccgttctcgatgtcgaagtcgatgccgtcgagcacggcggcgccgag 743
|||| ||||||||||||||||||||||||| | |||||| |||||||
Sbjct: 11437023 gccgctctcgatgtcgaagtcgatgccgtccatgacggcgtcgccgag 11436976
Score = 56.0 bits (28), Expect = 5e-005
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 1040 tgccttcgttgccgttctggccccagtacactgcgatgttgccggcgc 1087
|||| ||||||||||||||||||||||| | ||||||| ||||||||
Sbjct: 11436679 tgccctcgttgccgttctggccccagtagatcgcgatgtcgccggcgc 11436632
Score = 50.1 bits (25), Expect = 0.003
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 1040 tgccttcgttgccgttctggccccagtacactgcgatgttg 1080
|||| ||| ||||||||||||||||||| || |||||||||
Sbjct: 2995076 tgccctcgctgccgttctggccccagtagacggcgatgttg 2995036
Score = 46.1 bits (23), Expect = 0.046
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 1052 cgttctggccccagtacactgcgatgttgccggcg 1086
||||||||||||||||||| |||||| |||||||
Sbjct: 11432896 cgttctggccccagtacacggcgatgccgccggcg 11432862
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 345 bits (174), Expect = 4e-092
Identities = 351/410 (85%)
Strand = Plus / Minus
Query: 676 tcgtcgtagtgcgccgactggccgttctcgatgtcgaagtcgatgccgtcgagcacggcg 735
|||||||||||||||| | |||| |||||||||||||||||| |||||| |||||||||
Sbjct: 26556400 tcgtcgtagtgcgccgggttgccggtctcgatgtcgaagtcgacgccgtccagcacggcg 26556341
Query: 736 gcgccgagagggcgggacgagccgctgccgcccaggaagttgtcccacaggtagtcggcc 795
||||||| || ||||| ||||||||| |||||||||| ||||||||||||||||
Sbjct: 26556340 tcgccgagcggccgggagcccgagctgccgccgaggaagttgttccacaggtagtcggcc 26556281
Query: 796 acgctgttggcgtcgtcggtggaggagaggccgtagctgccgctggcgccgccgatggag 855
||| | |||||| | |||||| || || |||||||||||| | |||||||||||||
Sbjct: 26556280 acgtcctgggcgtcctgggtggacgacagcccgtagctgccggcgccgccgccgatggac 26556221
Query: 856 aggagcaccttgatgcccagcgactggcaggtctggatgtcgctgctctggccggtgcag 915
|||| ||||||| ||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 26556220 aggatgaccttgacgcccagcgactggcacgtctggatgtccgagctctggccggtgcag 26556161
Query: 916 ctgccggagccggggtcgcagtgtccggcgaggttgagaactggggtctgtccgttgccg 975
| |||||||| || |||||||| |||||||||||||| || |||||||| |||||||||
Sbjct: 26556160 ccgccggagcttggttcgcagtgcccggcgaggttgaggacaggggtctggccgttgccg 26556101
Query: 976 aaggttgtgaggaacgcgatgttgacgtaggcgtagagcccggagttgcaggcgtccgcc 1035
||||| ||||||| |||| ||||||| ||||| || ||||||||||||||||| |||
Sbjct: 26556100 aaggtgctgaggaaggcgaccatgacgtacgcgtataggccggagttgcaggcgtcggcc 26556041
Query: 1036 aggctgccttcgttgccgttctggccccagtacactgcgatgttgccggc 1085
|||||||| |||| ||||||||||||||||||||| ||||||| ||||||
Sbjct: 26556040 aggctgccctcgtcgccgttctggccccagtacacggcgatgtcgccggc 26555991
Score = 202 bits (102), Expect = 3e-049
Identities = 175/198 (88%), Gaps = 1/198 (0%)
Strand = Plus / Minus
Query: 442 acgccgaggtagaagctccccgcggtgatgctgctggt-ccacgtgttccatgcgttcac 500
||||||| |||||||||||| ||| ||| || || ||| |||||||||||| ||| ||||
Sbjct: 26556653 acgccgacgtagaagctcccggcgctgacgccgccggttccacgtgttccacgcgctcac 26556594
Query: 501 caggttggtgtcgtccccgttggcgtacgcgcacccggggttgttgtagaactgtatcca 560
||||||| || |||| |||||||||||| |||| |||||||||||||| || | |||
Sbjct: 26556593 caggttgctggcgtcgccgttggcgtactggcacggcgggttgttgtagaattgcaccca 26556534
Query: 561 cacgttgtcgaactggcccgtctgcagcgccggccccagcgacgcgtccgggtaggggca 620
|||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26556533 cacgctgtcgaacagccccgtctgcagcgccggccccagcgacgcgtccgggtaggggca 26556474
Query: 621 ctgcggcgccgccgtcag 638
||||||||||||||||||
Sbjct: 26556473 ctgcggcgccgccgtcag 26556456
Score = 99.6 bits (50), Expect = 4e-018
Identities = 204/250 (81%), Gaps = 4/250 (1%)
Strand = Plus / Minus
Query: 702 ctcgatgtcgaagtcgatgccgtcgagcacggcggcgccgagagggcgggacgagccgct 761
||||||||||||||||||||||||||| |||||| ||||||| || ||||||||| |
Sbjct: 36634967 ctcgatgtcgaagtcgatgccgtcgaggacggcgtcgccgaggggacgggacgaggagga 36634908
Query: 762 gccgcccaggaagttgtcccacaggtagtcggccacgctgttgg-cgtcgtcggtggagg 820
|||||| |||||||||| ||| ||||| |||||| ||| || |||| ||| ||| |
Sbjct: 36634907 gccgccgaggaagttgttccagaggtacatggccac-ctgccgggcgtcaccgggggatg 36634849
Query: 821 agaggccgtagctgccgctggcgccgccgatggagaggagcaccttgatgcc-cagcgac 879
||||||||||||||||| | |||||||||||||||| || ||||| | || | ||| |
Sbjct: 36634848 agaggccgtagctgccgtcgccgccgccgatggagagcaggaccttcaccccgcggcg-c 36634790
Query: 880 tggcaggtctggatgtcgctgctctggccggtgcagctgccggagccggggtcgcagtgt 939
||||| | ||||||| |||||||||||||||||| ||| || |||| ||||||||
Sbjct: 36634789 tggcacgcgcggatgtccttgctctggccggtgcagccgcccgacgcgggatcgcagtgg 36634730
Query: 940 ccggcgaggt 949
| ||||||||
Sbjct: 36634729 ctggcgaggt 36634720
Score = 99.6 bits (50), Expect = 4e-018
Identities = 71/78 (91%)
Strand = Plus / Minus
Query: 273 tcagacgctgcccttcacctggctgctgtagttgttctgcacgtcgttaaagcggtccca 332
||||||||||| |||||||||| ||||| |||||||||||||||||| || |||| |||
Sbjct: 26556822 tcagacgctgctcttcacctggttgctgaagttgttctgcacgtcgtagaaccggttcca 26556763
Query: 333 caccatgatgccgccgta 350
||||||||||||||||||
Sbjct: 26556762 caccatgatgccgccgta 26556745
Score = 75.8 bits (38), Expect = 5e-011
Identities = 88/102 (86%), Gaps = 2/102 (1%)
Strand = Plus / Minus
Query: 538 gggttgttgtagaactgtatccacacgttgtcgaactggcccgt-ctgcagcgccggccc 596
||||||||||||||||| | |||||||| ||||||| |||| || ||| ||||| ||
Sbjct: 36638923 gggttgttgtagaactgcacccacacgtagtcgaacaggccggtgctg-agcgcgacgcc 36638865
Query: 597 cagcgacgcgtccgggtaggggcactgcggcgccgccgtcag 638
||||||||||||||| |||||||||| ||||||||||||||
Sbjct: 36638864 gagcgacgcgtccgggaaggggcactgtggcgccgccgtcag 36638823
Score = 73.8 bits (37), Expect = 2e-010
Identities = 139/169 (82%), Gaps = 3/169 (1%)
Strand = Plus / Plus
Query: 700 ttctcgatgtcgaagtcgatgccgtcgagca-cggcggcgccgagagggcgggacgagcc 758
||||| ||||||||||||||||||||||||| ||||| ||||||| ||||| ||
Sbjct: 28010687 ttctctatgtcgaagtcgatgccgtcgagcaccggcgtcgccgagggggcgcgagtccga 28010746
Query: 759 gctgccgcccaggaagttgtcccacaggtagtcggccacgctgttggcgtcgtcggtgga 818
||||||||| |||||| ||| ||| ||||||||||| |||| |||||||||| |||
Sbjct: 28010747 gctgccgccgaggaaggtgttccagaggtagtcggcgacgccacgcgcgtcgtcggcgga 28010806
Query: 819 ggagaggccgtagctg-ccgctggcgccgccgatggagaggagcacctt 866
||||||| ||| ||| || || ||||||||| |||||||||||||||
Sbjct: 28010807 ggagagggagta-ctgacctctctcgccgccgagggagaggagcacctt 28010854
Score = 67.9 bits (34), Expect = 1e-008
Identities = 49/54 (90%)
Strand = Plus / Minus
Query: 706 atgtcgaagtcgatgccgtcgagcacggcggcgccgagagggcgggacgagccg 759
|||||||| |||| |||||||||||||||| ||||||| |||||||||| ||||
Sbjct: 28197137 atgtcgaaatcgacgccgtcgagcacggcgtcgccgagcgggcgggacgcgccg 28197084
Score = 63.9 bits (32), Expect = 2e-007
Identities = 77/92 (83%)
Strand = Plus / Minus
Query: 538 gggttgttgtagaactgtatccacacgttgtcgaactggcccgtctgcagcgccggcccc 597
||||||||||||||||| | |||||||| ||||||| | ||||| ||||||| |
Sbjct: 28197335 gggttgttgtagaactgcacccacacgtggtcgaacagccccgtggcgagcgccgcggcg 28197276
Query: 598 agcgacgcgtccgggtaggggcactgcggcgc 629
|| |||||||||||||| ||||||||||||||
Sbjct: 28197275 agggacgcgtccgggtacgggcactgcggcgc 28197244
Score = 60.0 bits (30), Expect = 3e-006
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 702 ctcgatgtcgaagtcgatgccgtcgagcacggcggcgccgag 743
||||||||||||||||| |||||||||||| ||| |||||||
Sbjct: 11377168 ctcgatgtcgaagtcgacgccgtcgagcaccgcgtcgccgag 11377127
Score = 58.0 bits (29), Expect = 1e-005
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 604 gcgtccgggtaggggcactgcggcgccgccgtcagca 640
||||||||||| |||||||||||||||||||| ||||
Sbjct: 28010588 gcgtccgggtacgggcactgcggcgccgccgtgagca 28010624
Score = 56.0 bits (28), Expect = 5e-005
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 696 gccgttctcgatgtcgaagtcgatgccgtcgagcacggcggcgccgag 743
|||| ||||||||||||||||||||||||| | |||||| |||||||
Sbjct: 36638744 gccgctctcgatgtcgaagtcgatgccgtccatgacggcgtcgccgag 36638697
Score = 56.0 bits (28), Expect = 5e-005
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 1040 tgccttcgttgccgttctggccccagtacactgcgatgttgccggcgc 1087
|||| ||||||||||||||||||||||| | ||||||| ||||||||
Sbjct: 36638400 tgccctcgttgccgttctggccccagtagatcgcgatgtcgccggcgc 36638353
Score = 56.0 bits (28), Expect = 5e-005
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 842 cgccgccgatggagaggagcaccttgatgcccagcgactggcag 885
||||||||||||||||||| ||||||| ||||| |||||||||
Sbjct: 11377016 cgccgccgatggagaggaggaccttgacgcccatggactggcag 11376973
Score = 50.1 bits (25), Expect = 0.003
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 1040 tgccttcgttgccgttctggccccagtacactgcgatgttg 1080
|||| ||| ||||||||||||||||||| || |||||||||
Sbjct: 28196797 tgccctcgctgccgttctggccccagtagacggcgatgttg 28196757
Score = 50.1 bits (25), Expect = 0.003
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 538 gggttgttgtagaactgtatccacacgttgtcgaactggcc 578
||||||||||||||||| | |||||||| ||||||| ||||
Sbjct: 11377359 gggttgttgtagaactgcacccacacgtagtcgaacaggcc 11377319
Score = 50.1 bits (25), Expect = 0.003
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 1023 gcaggcgtccgccaggctgccttcgttgccgttctggccccagta 1067
||||| ||| || ||| |||| |||||||||||||||||||||||
Sbjct: 11376835 gcaggtgtcggcgagggtgccctcgttgccgttctggccccagta 11376791
Score = 46.1 bits (23), Expect = 0.046
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 1052 cgttctggccccagtacactgcgatgttgccggcg 1086
||||||||||||||||||| |||||| |||||||
Sbjct: 36634617 cgttctggccccagtacacggcgatgccgccggcg 36634583
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 345 bits (174), Expect = 4e-092
Identities = 351/410 (85%)
Strand = Plus / Minus
Query: 676 tcgtcgtagtgcgccgactggccgttctcgatgtcgaagtcgatgccgtcgagcacggcg 735
|||||||||||||||| | |||| |||||||||||||||||| |||||| |||||||||
Sbjct: 26879304 tcgtcgtagtgcgccgggttgccggtctcgatgtcgaagtcgacgccgtccagcacggcg 26879245
Query: 736 gcgccgagagggcgggacgagccgctgccgcccaggaagttgtcccacaggtagtcggcc 795
||||||| || ||||| ||||||||| |||||||||| ||||||||||||||||
Sbjct: 26879244 tcgccgagcggccgggagcccgagctgccgccgaggaagttgttccacaggtagtcggcc 26879185
Query: 796 acgctgttggcgtcgtcggtggaggagaggccgtagctgccgctggcgccgccgatggag 855
||| | |||||| | |||||| || || |||||||||||| | |||||||||||||
Sbjct: 26879184 acgtcctgggcgtcctgggtggacgacagcccgtagctgccggcgccgccgccgatggac 26879125
Query: 856 aggagcaccttgatgcccagcgactggcaggtctggatgtcgctgctctggccggtgcag 915
|||| ||||||| ||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 26879124 aggatgaccttgacgcccagcgactggcacgtctggatgtccgagctctggccggtgcag 26879065
Query: 916 ctgccggagccggggtcgcagtgtccggcgaggttgagaactggggtctgtccgttgccg 975
| |||||||| || |||||||| |||||||||||||| || |||||||| |||||||||
Sbjct: 26879064 ccgccggagcttggttcgcagtgcccggcgaggttgaggacaggggtctggccgttgccg 26879005
Query: 976 aaggttgtgaggaacgcgatgttgacgtaggcgtagagcccggagttgcaggcgtccgcc 1035
||||| ||||||| |||| ||||||| ||||| || ||||||||||||||||| |||
Sbjct: 26879004 aaggtgctgaggaaggcgaccatgacgtacgcgtataggccggagttgcaggcgtcggcc 26878945
Query: 1036 aggctgccttcgttgccgttctggccccagtacactgcgatgttgccggc 1085
|||||||| |||| ||||||||||||||||||||| ||||||| ||||||
Sbjct: 26878944 aggctgccctcgtcgccgttctggccccagtacacggcgatgtcgccggc 26878895
Score = 216 bits (109), Expect = 2e-053
Identities = 175/197 (88%)
Strand = Plus / Minus
Query: 442 acgccgaggtagaagctccccgcggtgatgctgctggtccacgtgttccatgcgttcacc 501
||||||| |||||||||||| ||| ||| || || ||||||||||||||| ||| |||||
Sbjct: 26879556 acgccgacgtagaagctcccggcgctgacgccgccggtccacgtgttccacgcgctcacc 26879497
Query: 502 aggttggtgtcgtccccgttggcgtacgcgcacccggggttgttgtagaactgtatccac 561
|||||| || |||| |||||||||||| |||| |||||||||||||| || | ||||
Sbjct: 26879496 aggttgctggcgtcgccgttggcgtactggcacggcgggttgttgtagaattgcacccac 26879437
Query: 562 acgttgtcgaactggcccgtctgcagcgccggccccagcgacgcgtccgggtaggggcac 621
||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26879436 acgctgtcgaacagccccgtctgcagcgccggccccagcgacgcgtccgggtaggggcac 26879377
Query: 622 tgcggcgccgccgtcag 638
|||||||||||||||||
Sbjct: 26879376 tgcggcgccgccgtcag 26879360
Score = 99.6 bits (50), Expect = 4e-018
Identities = 204/250 (81%), Gaps = 4/250 (1%)
Strand = Plus / Minus
Query: 702 ctcgatgtcgaagtcgatgccgtcgagcacggcggcgccgagagggcgggacgagccgct 761
||||||||||||||||||||||||||| |||||| ||||||| || ||||||||| |
Sbjct: 37229566 ctcgatgtcgaagtcgatgccgtcgaggacggcgtcgccgaggggacgggacgaggagga 37229507
Query: 762 gccgcccaggaagttgtcccacaggtagtcggccacgctgttgg-cgtcgtcggtggagg 820
|||||| |||||||||| ||| ||||| |||||| ||| || |||| ||| ||| |
Sbjct: 37229506 gccgccgaggaagttgttccagaggtacatggccac-ctgccgggcgtcaccgggggatg 37229448
Query: 821 agaggccgtagctgccgctggcgccgccgatggagaggagcaccttgatgcc-cagcgac 879
||||||||||||||||| | |||||||||||||||| || ||||| | || | ||| |
Sbjct: 37229447 agaggccgtagctgccgtcgccgccgccgatggagagcaggaccttcaccccgcggcg-c 37229389
Query: 880 tggcaggtctggatgtcgctgctctggccggtgcagctgccggagccggggtcgcagtgt 939
||||| | ||||||| |||||||||||||||||| ||| || |||| ||||||||
Sbjct: 37229388 tggcacgcgcggatgtccttgctctggccggtgcagccgcccgacgcgggatcgcagtgg 37229329
Query: 940 ccggcgaggt 949
| ||||||||
Sbjct: 37229328 ctggcgaggt 37229319
Score = 99.6 bits (50), Expect = 4e-018
Identities = 71/78 (91%)
Strand = Plus / Minus
Query: 273 tcagacgctgcccttcacctggctgctgtagttgttctgcacgtcgttaaagcggtccca 332
||||||||||| |||||||||| ||||| |||||||||||||||||| || |||| |||
Sbjct: 26879725 tcagacgctgctcttcacctggttgctgaagttgttctgcacgtcgtagaaccggttcca 26879666
Query: 333 caccatgatgccgccgta 350
||||||||||||||||||
Sbjct: 26879665 caccatgatgccgccgta 26879648
Score = 79.8 bits (40), Expect = 3e-012
Identities = 138/168 (82%), Gaps = 2/168 (1%)
Strand = Plus / Plus
Query: 700 ttctcgatgtcgaagtcgatgccgtcgagcacggcggcgccgagagggcgggacgagccg 759
||||| |||||||||||||||||||||||||| ||| ||||||| ||||| || |
Sbjct: 28348837 ttctctatgtcgaagtcgatgccgtcgagcaccgcgtcgccgagggggcgcgagtccgag 28348896
Query: 760 ctgccgcccaggaagttgtcccacaggtagtcggccacgctgttggcgtcgtcggtggag 819
|||||||| |||||| ||| ||| ||||||||||| |||| |||||||||| ||||
Sbjct: 28348897 ctgccgccgaggaaggtgttccagaggtagtcggcgacgccacgcgcgtcgtcggcggag 28348956
Query: 820 gagaggccgtagctg-ccgctggcgccgccgatggagaggagcacctt 866
|||||| ||| ||| || || ||||||||| |||||||||||||||
Sbjct: 28348957 gagagggagta-ctgacctctctcgccgccgagggagaggagcacctt 28349003
Score = 75.8 bits (38), Expect = 5e-011
Identities = 88/102 (86%), Gaps = 2/102 (1%)
Strand = Plus / Minus
Query: 538 gggttgttgtagaactgtatccacacgttgtcgaactggcccgt-ctgcagcgccggccc 596
||||||||||||||||| | |||||||| ||||||| |||| || ||| ||||| ||
Sbjct: 37233522 gggttgttgtagaactgcacccacacgtagtcgaacaggccggtgctg-agcgcgacgcc 37233464
Query: 597 cagcgacgcgtccgggtaggggcactgcggcgccgccgtcag 638
||||||||||||||| |||||||||| ||||||||||||||
Sbjct: 37233463 gagcgacgcgtccgggaaggggcactgtggcgccgccgtcag 37233422
Score = 67.9 bits (34), Expect = 1e-008
Identities = 49/54 (90%)
Strand = Plus / Minus
Query: 706 atgtcgaagtcgatgccgtcgagcacggcggcgccgagagggcgggacgagccg 759
|||||||| |||| |||||||||||||||| ||||||| |||||||||| ||||
Sbjct: 28528879 atgtcgaaatcgacgccgtcgagcacggcgtcgccgagcgggcgggacgcgccg 28528826
Score = 63.9 bits (32), Expect = 2e-007
Identities = 77/92 (83%)
Strand = Plus / Minus
Query: 538 gggttgttgtagaactgtatccacacgttgtcgaactggcccgtctgcagcgccggcccc 597
||||||||||||||||| | |||||||| ||||||| | ||||| ||||||| |
Sbjct: 28529077 gggttgttgtagaactgcacccacacgtggtcgaacagccccgtggcgagcgccgcggcg 28529018
Query: 598 agcgacgcgtccgggtaggggcactgcggcgc 629
|| |||||||||||||| ||||||||||||||
Sbjct: 28529017 agggacgcgtccgggtacgggcactgcggcgc 28528986
Score = 60.0 bits (30), Expect = 3e-006
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 702 ctcgatgtcgaagtcgatgccgtcgagcacggcggcgccgag 743
||||||||||||||||| |||||||||||| ||| |||||||
Sbjct: 11207228 ctcgatgtcgaagtcgacgccgtcgagcaccgcgtcgccgag 11207187
Score = 58.0 bits (29), Expect = 1e-005
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 604 gcgtccgggtaggggcactgcggcgccgccgtcagca 640
||||||||||| |||||||||||||||||||| ||||
Sbjct: 28348738 gcgtccgggtacgggcactgcggcgccgccgtgagca 28348774
Score = 56.0 bits (28), Expect = 5e-005
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 696 gccgttctcgatgtcgaagtcgatgccgtcgagcacggcggcgccgag 743
|||| ||||||||||||||||||||||||| | |||||| |||||||
Sbjct: 37233343 gccgctctcgatgtcgaagtcgatgccgtccatgacggcgtcgccgag 37233296
Score = 56.0 bits (28), Expect = 5e-005
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 1040 tgccttcgttgccgttctggccccagtacactgcgatgttgccggcgc 1087
|||| ||||||||||||||||||||||| | ||||||| ||||||||
Sbjct: 37232999 tgccctcgttgccgttctggccccagtagatcgcgatgtcgccggcgc 37232952
Score = 56.0 bits (28), Expect = 5e-005
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 842 cgccgccgatggagaggagcaccttgatgcccagcgactggcag 885
||||||||||||||||||| ||||||| ||||| |||||||||
Sbjct: 11207076 cgccgccgatggagaggaggaccttgacgcccatggactggcag 11207033
Score = 50.1 bits (25), Expect = 0.003
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 1040 tgccttcgttgccgttctggccccagtacactgcgatgttg 1080
|||| ||| ||||||||||||||||||| || |||||||||
Sbjct: 28528539 tgccctcgctgccgttctggccccagtagacggcgatgttg 28528499
Score = 50.1 bits (25), Expect = 0.003
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 538 gggttgttgtagaactgtatccacacgttgtcgaactggcc 578
||||||||||||||||| | |||||||| ||||||| ||||
Sbjct: 11207419 gggttgttgtagaactgcacccacacgtagtcgaacaggcc 11207379
Score = 50.1 bits (25), Expect = 0.003
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 1023 gcaggcgtccgccaggctgccttcgttgccgttctggccccagta 1067
||||| ||| || ||| |||| |||||||||||||||||||||||
Sbjct: 11206895 gcaggtgtcggcgagggtgccctcgttgccgttctggccccagta 11206851
Score = 46.1 bits (23), Expect = 0.046
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 1052 cgttctggccccagtacactgcgatgttgccggcg 1086
||||||||||||||||||| |||||| |||||||
Sbjct: 37229216 cgttctggccccagtacacggcgatgccgccggcg 37229182
>gb|CV723702.1|CV723702 root--04-H23.g1 Rice root lambda phage cDNA library (root) Oryza
sativa (japonica cultivar-group) cDNA clone
root--04-H23, mRNA sequence
Length = 477
Score = 216 bits (109), Expect = 2e-053
Identities = 175/197 (88%)
Strand = Plus / Minus
Query: 442 acgccgaggtagaagctccccgcggtgatgctgctggtccacgtgttccatgcgttcacc 501
||||||| |||||||||||| ||| ||| || || ||||||||||||||| ||| |||||
Sbjct: 454 acgccgacgtagaagctcccggcgctgacgccgccggtccacgtgttccacgcgctcacc 395
Query: 502 aggttggtgtcgtccccgttggcgtacgcgcacccggggttgttgtagaactgtatccac 561
|||||| || |||| |||||||||||| |||| |||||||||||||| || | ||||
Sbjct: 394 aggttgctggcgtcgccgttggcgtactggcacggcgggttgttgtagaattgcacccac 335
Query: 562 acgttgtcgaactggcccgtctgcagcgccggccccagcgacgcgtccgggtaggggcac 621
||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 acgctgtcgaacagccccgtctgcagcgccggccccagcgacgcgtccgggtaggggcac 275
Query: 622 tgcggcgccgccgtcag 638
|||||||||||||||||
Sbjct: 274 tgcggcgccgccgtcag 258
Score = 129 bits (65), Expect = 4e-027
Identities = 161/193 (83%)
Strand = Plus / Minus
Query: 676 tcgtcgtagtgcgccgactggccgttctcgatgtcgaagtcgatgccgtcgagcacggcg 735
|||||||||||||||| | |||| |||||||||||||||||| |||||| |||||||||
Sbjct: 202 tcgtcgtagtgcgccgggttgccggtctcgatgtcgaagtcgacgccgtccagcacggcg 143
Query: 736 gcgccgagagggcgggacgagccgctgccgcccaggaagttgtcccacaggtagtcggcc 795
||||||| || ||||| ||||||||| |||||||||| ||||||||||||||||
Sbjct: 142 tcgccgagcggccgggagcccgagctgccgccgaggaagttgttccacaggtagtcggcc 83
Query: 796 acgctgttggcgtcgtcggtggaggagaggccgtagctgccgctggcgccgccgatggag 855
||| | |||||| | |||||| || || |||||||||||| | |||||||||||||
Sbjct: 82 acgtcctgggcgtcctgggtggacgacagcccgtagctgccggcgccgccgccgatggac 23
Query: 856 aggagcaccttga 868
|||| |||||||
Sbjct: 22 aggatgaccttga 10
>gb|D46335.1|D46335 RICS10944A Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA, mRNA sequence
Length = 411
Score = 174 bits (88), Expect = 7e-041
Identities = 189/224 (84%)
Strand = Plus / Minus
Query: 862 accttgatgcccagcgactggcaggtctggatgtcgctgctctggccggtgcagctgccg 921
||||||| ||||| |||||| || ||||||||||| ||||||||||| || | ||||
Sbjct: 362 accttgacgcccaccgactgncacgtctggatgtccgacctctggccggttcaaccgccg 303
Query: 922 gagccggggtcgcagtgtccggcgaggttgagaactggggtctgtccgttgccgaaggtt 981
|| | || |||||||| ||| |||||||||| || |||||||| ||||||||||||||
Sbjct: 302 gancttggttcgcagtgcccgncgaggttgaggacaggggtctggccgttgccgaaggtg 243
Query: 982 gtgaggaacgcgatgttgacgtaggcgtagagcccggagttgcaggcgtccgccaggctg 1041
||||||| |||| ||||||| ||||| || |||||||||||| |||| |||||||||
Sbjct: 242 ctgaggaaggcgaccatgacgtacgcgtataggccggagttgcagncgtcggccaggctg 183
Query: 1042 ccttcgttgccgttctggccccagtacactgcgatgttgccggc 1085
|| |||| ||||||||||||||||||||| ||||||| ||||||
Sbjct: 182 ccctcgtcgccgttctggccccagtacacggcgatgtcgccggc 139
>gb|AU102124.1|AU102124 AU102124 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C10728, mRNA sequence
Length = 671
Score = 170 bits (86), Expect = 1e-039
Identities = 174/200 (87%), Gaps = 3/200 (1%)
Strand = Plus / Minus
Query: 442 acgccgaggtagaagctccccgcggtgatgctgctggtccacgtgttccatgcgttcacc 501
||||||| |||||||||||| ||| ||| || || ||||||||||||||| ||| |||||
Sbjct: 237 acgccgacgtagaagctcccggcgctgacgccgccggtccacgtgttccacgcgctcacc 178
Query: 502 aggttggtgtcgtccccgttggcgtacgcgcacccg-gggttgttgtagaactgtatcca 560
|||||| || |||| |||||||||||| |||| |||||||||||||| || | |||
Sbjct: 177 aggttgctggcgtcgccgttggcgtactggcacggncgggttgttgtagaattgcaccca 118
Query: 561 cacgttgtcgaactggcccgtctgcagcgccggccccagcgacgcg-tccgggtaggggc 619
|||| |||||||| | |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 117 cacgctgtcgaacagccccgtctgcagcgccggccccagcgacgcgttccgggtaggggc 58
Query: 620 ac-tgcggcgccgccgtcag 638
|| | |||||||||||||||
Sbjct: 57 acttncggcgccgccgtcag 38
Score = 99.6 bits (50), Expect = 4e-018
Identities = 71/78 (91%)
Strand = Plus / Minus
Query: 273 tcagacgctgcccttcacctggctgctgtagttgttctgcacgtcgttaaagcggtccca 332
||||||||||| |||||||||| ||||| |||||||||||||||||| || |||| |||
Sbjct: 406 tcagacgctgctcttcacctggttgctgaagttgttctgcacgtcgtagaaccggttcca 347
Query: 333 caccatgatgccgccgta 350
||||||||||||||||||
Sbjct: 346 caccatgatgccgccgta 329
>gb|D22311.1|D22311 RICC10728A Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C10728_1A, mRNA sequence
Length = 328
Score = 168 bits (85), Expect = 5e-039
Identities = 162/187 (86%), Gaps = 1/187 (0%)
Strand = Plus / Minus
Query: 900 gctctggccggtgca-gctgccggagccggggtcgcagtgtccggcgaggttgagaactg 958
||||||||||||||| | |||||||| || ||| |||| |||||||||||||| || |
Sbjct: 304 gctctggccggtgcaanccgccggagcttggttcgnagtgcccggcgaggttgaggacag 245
Query: 959 gggtctgtccgttgccgaaggttgtgaggaacgcgatgttgacgtaggcgtagagcccgg 1018
||||||| |||||||||||||| ||||||| |||| ||||||| ||||| || ||||
Sbjct: 244 gggtctggccgttgccgaaggtgctgaggaaggcgaccatgacgtacgcgtataggccgg 185
Query: 1019 agttgcaggcgtccgccaggctgccttcgttgccgttctggccccagtacactgcgatgt 1078
||||||||||||| ||||||||||| |||| ||||||||||||||||||||| |||||||
Sbjct: 184 agttgcaggcgtcggccaggctgccctcgtcgccgttctggccccagtacacggcgatgt 125
Query: 1079 tgccggc 1085
||||||
Sbjct: 124 cgccggc 118
>gb|C73106.1|C73106 C73106 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E2923_1A, mRNA sequence
Length = 350
Score = 165 bits (83), Expect = 7e-038
Identities = 174/202 (86%), Gaps = 2/202 (0%)
Strand = Plus / Minus
Query: 886 gtctggatgtcgctgctctggccggtgca-gctgccggagccggggtcgca-gtgtccgg 943
||||||||||| ||| ||||||||||| || |||||||| || ||||| ||| ||||
Sbjct: 290 gtctggatgtccgagctntggccggtgcaagccgccggagcttggttcgcaagtgcccgg 231
Query: 944 cgaggttgagaactggggtctgtccgttgccgaaggttgtgaggaacgcgatgttgacgt 1003
|||||||||| || |||||||| |||||||||||||| ||||||| |||| ||||||
Sbjct: 230 cgaggttgaggacaggggtctggccgttgccgaaggtgctgaggaaggcgaccatgacgt 171
Query: 1004 aggcgtagagcccggagttgcaggcgtccgccaggctgccttcgttgccgttctggcccc 1063
| ||||| || ||||||||||||||||| ||||||||||| |||| ||||||||||||||
Sbjct: 170 acgcgtataggccggagttgcaggcgtcggccaggctgccctcgtcgccgttctggcccc 111
Query: 1064 agtacactgcgatgttgccggc 1085
||||||| ||||||| ||||||
Sbjct: 110 agtacacggcgatgtcgccggc 89
>gb|BF889433.1|BF889433 EST002 Magnaporthe grisea infected 16-day-old rice seedling cDNA
library Oryza sativa (japonica cultivar-group) cDNA clone
BFR02 5', mRNA sequence
Length = 268
Score = 137 bits (69), Expect = 2e-029
Identities = 120/137 (87%)
Strand = Plus / Minus
Query: 949 ttgagaactggggtctgtccgttgccgaaggttgtgaggaacgcgatgttgacgtaggcg 1008
||||| || |||||||| |||||||||||||| ||||||| |||| ||||||| |||
Sbjct: 268 ttgaggacaggggtctggccgttgccgaaggtgctgaggaaggcgaccatgacgtacgcg 209
Query: 1009 tagagcccggagttgcaggcgtccgccaggctgccttcgttgccgttctggccccagtac 1068
|| || ||||||||||||||||| ||||||||||| |||| |||||||||||||||||||
Sbjct: 208 tataggccggagttgcaggcgtcggccaggctgccctcgtcgccgttctggccccagtac 149
Query: 1069 actgcgatgttgccggc 1085
|| ||||||| ||||||
Sbjct: 148 acggcgatgtcgccggc 132
>dbj|AK111415.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-182-G02, full
insert sequence
Length = 1346
Score = 99.6 bits (50), Expect = 4e-018
Identities = 204/250 (81%), Gaps = 4/250 (1%)
Strand = Plus / Minus
Query: 702 ctcgatgtcgaagtcgatgccgtcgagcacggcggcgccgagagggcgggacgagccgct 761
||||||||||||||||||||||||||| |||||| ||||||| || ||||||||| |
Sbjct: 527 ctcgatgtcgaagtcgatgccgtcgaggacggcgtcgccgaggggacgggacgaggagga 468
Query: 762 gccgcccaggaagttgtcccacaggtagtcggccacgctgttgg-cgtcgtcggtggagg 820
|||||| |||||||||| ||| ||||| |||||| ||| || |||| ||| ||| |
Sbjct: 467 gccgccgaggaagttgttccagaggtacatggccac-ctgccgggcgtcaccgggggatg 409
Query: 821 agaggccgtagctgccgctggcgccgccgatggagaggagcaccttgatgcc-cagcgac 879
||||||||||||||||| | |||||||||||||||| || ||||| | || | ||| |
Sbjct: 408 agaggccgtagctgccgtcgccgccgccgatggagagcaggaccttcaccccgcggcg-c 350
Query: 880 tggcaggtctggatgtcgctgctctggccggtgcagctgccggagccggggtcgcagtgt 939
||||| | ||||||| |||||||||||||||||| ||| || |||| ||||||||
Sbjct: 349 tggcacgcgcggatgtccttgctctggccggtgcagccgcccgacgcgggatcgcagtgg 290
Query: 940 ccggcgaggt 949
| ||||||||
Sbjct: 289 ctggcgaggt 280
Score = 46.1 bits (23), Expect = 0.046
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 1052 cgttctggccccagtacactgcgatgttgccggcg 1086
||||||||||||||||||| |||||| |||||||
Sbjct: 177 cgttctggccccagtacacggcgatgccgccggcg 143
>gb|AACV01002727.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002727, whole
genome shotgun sequence
Length = 21631
Score = 99.6 bits (50), Expect = 4e-018
Identities = 204/250 (81%), Gaps = 4/250 (1%)
Strand = Plus / Plus
Query: 702 ctcgatgtcgaagtcgatgccgtcgagcacggcggcgccgagagggcgggacgagccgct 761
||||||||||||||||||||||||||| |||||| ||||||| || ||||||||| |
Sbjct: 12037 ctcgatgtcgaagtcgatgccgtcgaggacggcgtcgccgaggggacgggacgaggagga 12096
Query: 762 gccgcccaggaagttgtcccacaggtagtcggccacgctgttgg-cgtcgtcggtggagg 820
|||||| |||||||||| ||| ||||| |||||| ||| || |||| ||| ||| |
Sbjct: 12097 gccgccgaggaagttgttccagaggtacatggccac-ctgccgggcgtcaccgggggatg 12155
Query: 821 agaggccgtagctgccgctggcgccgccgatggagaggagcaccttgatgcc-cagcgac 879
||||||||||||||||| | |||||||||||||||| || ||||| | || | ||| |
Sbjct: 12156 agaggccgtagctgccgtcgccgccgccgatggagagcaggaccttcaccccgcggcg-c 12214
Query: 880 tggcaggtctggatgtcgctgctctggccggtgcagctgccggagccggggtcgcagtgt 939
||||| | ||||||| |||||||||||||||||| ||| || |||| ||||||||
Sbjct: 12215 tggcacgcgcggatgtccttgctctggccggtgcagccgcccgacgcgggatcgcagtgg 12274
Query: 940 ccggcgaggt 949
| ||||||||
Sbjct: 12275 ctggcgaggt 12284
Score = 75.8 bits (38), Expect = 5e-011
Identities = 88/102 (86%), Gaps = 2/102 (1%)
Strand = Plus / Plus
Query: 538 gggttgttgtagaactgtatccacacgttgtcgaactggcccgt-ctgcagcgccggccc 596
||||||||||||||||| | |||||||| ||||||| |||| || ||| ||||| ||
Sbjct: 8081 gggttgttgtagaactgcacccacacgtagtcgaacaggccggtgctg-agcgcgacgcc 8139
Query: 597 cagcgacgcgtccgggtaggggcactgcggcgccgccgtcag 638
||||||||||||||| |||||||||| ||||||||||||||
Sbjct: 8140 gagcgacgcgtccgggaaggggcactgtggcgccgccgtcag 8181
Score = 56.0 bits (28), Expect = 5e-005
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 1040 tgccttcgttgccgttctggccccagtacactgcgatgttgccggcgc 1087
|||| ||||||||||||||||||||||| | ||||||| ||||||||
Sbjct: 8604 tgccctcgttgccgttctggccccagtagatcgcgatgtcgccggcgc 8651
Score = 56.0 bits (28), Expect = 5e-005
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 696 gccgttctcgatgtcgaagtcgatgccgtcgagcacggcggcgccgag 743
|||| ||||||||||||||||||||||||| | |||||| |||||||
Sbjct: 8260 gccgctctcgatgtcgaagtcgatgccgtccatgacggcgtcgccgag 8307
Score = 46.1 bits (23), Expect = 0.046
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 1052 cgttctggccccagtacactgcgatgttgccggcg 1086
||||||||||||||||||| |||||| |||||||
Sbjct: 12387 cgttctggccccagtacacggcgatgccgccggcg 12421
>ref|NM_190698.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 894
Score = 99.6 bits (50), Expect = 4e-018
Identities = 204/250 (81%), Gaps = 4/250 (1%)
Strand = Plus / Minus
Query: 702 ctcgatgtcgaagtcgatgccgtcgagcacggcggcgccgagagggcgggacgagccgct 761
||||||||||||||||||||||||||| |||||| ||||||| || ||||||||| |
Sbjct: 456 ctcgatgtcgaagtcgatgccgtcgaggacggcgtcgccgaggggacgggacgaggagga 397
Query: 762 gccgcccaggaagttgtcccacaggtagtcggccacgctgttgg-cgtcgtcggtggagg 820
|||||| |||||||||| ||| ||||| |||||| ||| || |||| ||| ||| |
Sbjct: 396 gccgccgaggaagttgttccagaggtacatggccac-ctgccgggcgtcaccgggggatg 338
Query: 821 agaggccgtagctgccgctggcgccgccgatggagaggagcaccttgatgcc-cagcgac 879
||||||||||||||||| | |||||||||||||||| || ||||| | || | ||| |
Sbjct: 337 agaggccgtagctgccgtcgccgccgccgatggagagcaggaccttcaccccgcggcg-c 279
Query: 880 tggcaggtctggatgtcgctgctctggccggtgcagctgccggagccggggtcgcagtgt 939
||||| | ||||||| |||||||||||||||||| ||| || |||| ||||||||
Sbjct: 278 tggcacgcgcggatgtccttgctctggccggtgcagccgcccgacgcgggatcgcagtgg 219
Query: 940 ccggcgaggt 949
| ||||||||
Sbjct: 218 ctggcgaggt 209
Score = 46.1 bits (23), Expect = 0.046
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 1052 cgttctggccccagtacactgcgatgttgccggcg 1086
||||||||||||||||||| |||||| |||||||
Sbjct: 106 cgttctggccccagtacacggcgatgccgccggcg 72
>dbj|AP003287.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0679C12
Length = 153666
Score = 99.6 bits (50), Expect = 4e-018
Identities = 204/250 (81%), Gaps = 4/250 (1%)
Strand = Plus / Minus
Query: 702 ctcgatgtcgaagtcgatgccgtcgagcacggcggcgccgagagggcgggacgagccgct 761
||||||||||||||||||||||||||| |||||| ||||||| || ||||||||| |
Sbjct: 66555 ctcgatgtcgaagtcgatgccgtcgaggacggcgtcgccgaggggacgggacgaggagga 66496
Query: 762 gccgcccaggaagttgtcccacaggtagtcggccacgctgttgg-cgtcgtcggtggagg 820
|||||| |||||||||| ||| ||||| |||||| ||| || |||| ||| ||| |
Sbjct: 66495 gccgccgaggaagttgttccagaggtacatggccac-ctgccgggcgtcaccgggggatg 66437
Query: 821 agaggccgtagctgccgctggcgccgccgatggagaggagcaccttgatgcc-cagcgac 879
||||||||||||||||| | |||||||||||||||| || ||||| | || | ||| |
Sbjct: 66436 agaggccgtagctgccgtcgccgccgccgatggagagcaggaccttcaccccgcggcg-c 66378
Query: 880 tggcaggtctggatgtcgctgctctggccggtgcagctgccggagccggggtcgcagtgt 939
||||| | ||||||| |||||||||||||||||| ||| || |||| ||||||||
Sbjct: 66377 tggcacgcgcggatgtccttgctctggccggtgcagccgcccgacgcgggatcgcagtgg 66318
Query: 940 ccggcgaggt 949
| ||||||||
Sbjct: 66317 ctggcgaggt 66308
Score = 75.8 bits (38), Expect = 5e-011
Identities = 88/102 (86%), Gaps = 2/102 (1%)
Strand = Plus / Minus
Query: 538 gggttgttgtagaactgtatccacacgttgtcgaactggcccgt-ctgcagcgccggccc 596
||||||||||||||||| | |||||||| ||||||| |||| || ||| ||||| ||
Sbjct: 70511 gggttgttgtagaactgcacccacacgtagtcgaacaggccggtgctg-agcgcgacgcc 70453
Query: 597 cagcgacgcgtccgggtaggggcactgcggcgccgccgtcag 638
||||||||||||||| |||||||||| ||||||||||||||
Sbjct: 70452 gagcgacgcgtccgggaaggggcactgtggcgccgccgtcag 70411
Score = 56.0 bits (28), Expect = 5e-005
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 696 gccgttctcgatgtcgaagtcgatgccgtcgagcacggcggcgccgag 743
|||| ||||||||||||||||||||||||| | |||||| |||||||
Sbjct: 70332 gccgctctcgatgtcgaagtcgatgccgtccatgacggcgtcgccgag 70285
Score = 56.0 bits (28), Expect = 5e-005
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 1040 tgccttcgttgccgttctggccccagtacactgcgatgttgccggcgc 1087
|||| ||||||||||||||||||||||| | ||||||| ||||||||
Sbjct: 69988 tgccctcgttgccgttctggccccagtagatcgcgatgtcgccggcgc 69941
Score = 46.1 bits (23), Expect = 0.046
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 1052 cgttctggccccagtacactgcgatgttgccggcg 1086
||||||||||||||||||| |||||| |||||||
Sbjct: 66205 cgttctggccccagtacacggcgatgccgccggcg 66171
>dbj|AP003794.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0489B03
Length = 150381
Score = 99.6 bits (50), Expect = 4e-018
Identities = 204/250 (81%), Gaps = 4/250 (1%)
Strand = Plus / Minus
Query: 702 ctcgatgtcgaagtcgatgccgtcgagcacggcggcgccgagagggcgggacgagccgct 761
||||||||||||||||||||||||||| |||||| ||||||| || ||||||||| |
Sbjct: 104222 ctcgatgtcgaagtcgatgccgtcgaggacggcgtcgccgaggggacgggacgaggagga 104163
Query: 762 gccgcccaggaagttgtcccacaggtagtcggccacgctgttgg-cgtcgtcggtggagg 820
|||||| |||||||||| ||| ||||| |||||| ||| || |||| ||| ||| |
Sbjct: 104162 gccgccgaggaagttgttccagaggtacatggccac-ctgccgggcgtcaccgggggatg 104104
Query: 821 agaggccgtagctgccgctggcgccgccgatggagaggagcaccttgatgcc-cagcgac 879
||||||||||||||||| | |||||||||||||||| || ||||| | || | ||| |
Sbjct: 104103 agaggccgtagctgccgtcgccgccgccgatggagagcaggaccttcaccccgcggcg-c 104045
Query: 880 tggcaggtctggatgtcgctgctctggccggtgcagctgccggagccggggtcgcagtgt 939
||||| | ||||||| |||||||||||||||||| ||| || |||| ||||||||
Sbjct: 104044 tggcacgcgcggatgtccttgctctggccggtgcagccgcccgacgcgggatcgcagtgg 103985
Query: 940 ccggcgaggt 949
| ||||||||
Sbjct: 103984 ctggcgaggt 103975
Score = 75.8 bits (38), Expect = 5e-011
Identities = 88/102 (86%), Gaps = 2/102 (1%)
Strand = Plus / Minus
Query: 538 gggttgttgtagaactgtatccacacgttgtcgaactggcccgt-ctgcagcgccggccc 596
||||||||||||||||| | |||||||| ||||||| |||| || ||| ||||| ||
Sbjct: 108178 gggttgttgtagaactgcacccacacgtagtcgaacaggccggtgctg-agcgcgacgcc 108120
Query: 597 cagcgacgcgtccgggtaggggcactgcggcgccgccgtcag 638
||||||||||||||| |||||||||| ||||||||||||||
Sbjct: 108119 gagcgacgcgtccgggaaggggcactgtggcgccgccgtcag 108078
Score = 56.0 bits (28), Expect = 5e-005
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 696 gccgttctcgatgtcgaagtcgatgccgtcgagcacggcggcgccgag 743
|||| ||||||||||||||||||||||||| | |||||| |||||||
Sbjct: 107999 gccgctctcgatgtcgaagtcgatgccgtccatgacggcgtcgccgag 107952
Score = 56.0 bits (28), Expect = 5e-005
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 1040 tgccttcgttgccgttctggccccagtacactgcgatgttgccggcgc 1087
|||| ||||||||||||||||||||||| | ||||||| ||||||||
Sbjct: 107655 tgccctcgttgccgttctggccccagtagatcgcgatgtcgccggcgc 107608
Score = 46.1 bits (23), Expect = 0.046
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 1052 cgttctggccccagtacactgcgatgttgccggcg 1086
||||||||||||||||||| |||||| |||||||
Sbjct: 103872 cgttctggccccagtacacggcgatgccgccggcg 103838
>dbj|AK102369.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033091K14, full
insert sequence
Length = 1211
Score = 95.6 bits (48), Expect = 6e-017
Identities = 153/188 (81%)
Strand = Plus / Minus
Query: 673 aggtcgtcgtagtgcgccgactggccgttctcgatgtcgaagtcgatgccgtcgagcacg 732
|||||||||||||| || | ||||| |||||||||||||||||||||||||||||||
Sbjct: 561 aggtcgtcgtagtgggcggggcggccgagctcgatgtcgaagtcgatgccgtcgagcacg 502
Query: 733 gcggcgccgagagggcgggacgagccgctgccgcccaggaagttgtcccacaggtagtcg 792
||| |||||| ||||||||| | || |||||| ||| | |||||| |||| ||||
Sbjct: 501 gcgtcgccgaaggggcgggacttggagcggccgccaaggtaaaagtcccagaggtggtcg 442
Query: 793 gccacgctgttggcgtcgtcggtggaggagaggccgtagctgccgctggcgccgccgatg 852
|| ||| ||||||||| | |||||| |||| ||| |||||| || |||||||||||
Sbjct: 441 gcgacggccttggcgtcggccttggaggcgagggagtacctgccgatgccgccgccgatg 382
Query: 853 gagaggag 860
||||||||
Sbjct: 381 gagaggag 374
Score = 52.0 bits (26), Expect = 7e-004
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 606 gtccgggtaggggcactgcggcgccgccgtcagc 639
||||||| | ||||||||||||||||||||||||
Sbjct: 649 gtccgggaacgggcactgcggcgccgccgtcagc 616
>gb|AACV01009410.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg009410, whole
genome shotgun sequence
Length = 18468
Score = 95.6 bits (48), Expect = 6e-017
Identities = 153/188 (81%)
Strand = Plus / Minus
Query: 673 aggtcgtcgtagtgcgccgactggccgttctcgatgtcgaagtcgatgccgtcgagcacg 732
|||||||||||||| || | ||||| |||||||||||||||||||||||||||||||
Sbjct: 14868 aggtcgtcgtagtgggcggggcggccgagctcgatgtcgaagtcgatgccgtcgagcacg 14809
Query: 733 gcggcgccgagagggcgggacgagccgctgccgcccaggaagttgtcccacaggtagtcg 792
||| |||||| ||||||||| | || |||||| ||| | |||||| |||| ||||
Sbjct: 14808 gcgtcgccgaaggggcgggacttggagcggccgccaaggtaaaagtcccagaggtggtcg 14749
Query: 793 gccacgctgttggcgtcgtcggtggaggagaggccgtagctgccgctggcgccgccgatg 852
|| ||| ||||||||| | |||||| |||| ||| |||||| || |||||||||||
Sbjct: 14748 gcgacggccttggcgtcggccttggaggcgagggagtacctgccgatgccgccgccgatg 14689
Query: 853 gagaggag 860
||||||||
Sbjct: 14688 gagaggag 14681
Score = 52.0 bits (26), Expect = 7e-004
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 606 gtccgggtaggggcactgcggcgccgccgtcagc 639
||||||| | ||||||||||||||||||||||||
Sbjct: 15369 gtccgggaacgggcactgcggcgccgccgtcagc 15336
>ref|XM_472006.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 906
Score = 95.6 bits (48), Expect = 6e-017
Identities = 153/188 (81%)
Strand = Plus / Minus
Query: 673 aggtcgtcgtagtgcgccgactggccgttctcgatgtcgaagtcgatgccgtcgagcacg 732
|||||||||||||| || | ||||| |||||||||||||||||||||||||||||||
Sbjct: 485 aggtcgtcgtagtgggcggggcggccgagctcgatgtcgaagtcgatgccgtcgagcacg 426
Query: 733 gcggcgccgagagggcgggacgagccgctgccgcccaggaagttgtcccacaggtagtcg 792
||| |||||| ||||||||| | || |||||| ||| | |||||| |||| ||||
Sbjct: 425 gcgtcgccgaaggggcgggacttggagcggccgccaaggtaaaagtcccagaggtggtcg 366
Query: 793 gccacgctgttggcgtcgtcggtggaggagaggccgtagctgccgctggcgccgccgatg 852
|| ||| ||||||||| | |||||| |||| ||| |||||| || |||||||||||
Sbjct: 365 gcgacggccttggcgtcggccttggaggcgagggagtacctgccgatgccgccgccgatg 306
Query: 853 gagaggag 860
||||||||
Sbjct: 305 gagaggag 298
Score = 52.0 bits (26), Expect = 7e-004
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 606 gtccgggtaggggcactgcggcgccgccgtcagc 639
||||||| | ||||||||||||||||||||||||
Sbjct: 573 gtccgggaacgggcactgcggcgccgccgtcagc 540
>ref|NT_079857.2| Oryza sativa (japonica cultivar-group)
Length = 1332137
Score = 95.6 bits (48), Expect = 6e-017
Identities = 153/188 (81%)
Strand = Plus / Plus
Query: 673 aggtcgtcgtagtgcgccgactggccgttctcgatgtcgaagtcgatgccgtcgagcacg 732
|||||||||||||| || | ||||| |||||||||||||||||||||||||||||||
Sbjct: 1223331 aggtcgtcgtagtgggcggggcggccgagctcgatgtcgaagtcgatgccgtcgagcacg 1223390
Query: 733 gcggcgccgagagggcgggacgagccgctgccgcccaggaagttgtcccacaggtagtcg 792
||| |||||| ||||||||| | || |||||| ||| | |||||| |||| ||||
Sbjct: 1223391 gcgtcgccgaaggggcgggacttggagcggccgccaaggtaaaagtcccagaggtggtcg 1223450
Query: 793 gccacgctgttggcgtcgtcggtggaggagaggccgtagctgccgctggcgccgccgatg 852
|| ||| ||||||||| | |||||| |||| ||| |||||| || |||||||||||
Sbjct: 1223451 gcgacggccttggcgtcggccttggaggcgagggagtacctgccgatgccgccgccgatg 1223510
Query: 853 gagaggag 860
||||||||
Sbjct: 1223511 gagaggag 1223518
Score = 52.0 bits (26), Expect = 7e-004
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 606 gtccgggtaggggcactgcggcgccgccgtcagc 639
||||||| | ||||||||||||||||||||||||
Sbjct: 1222830 gtccgggaacgggcactgcggcgccgccgtcagc 1222863
>gb|CH401189.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000026 genomic
scaffold, whole genome shotgun sequence
Length = 11796637
Score = 95.6 bits (48), Expect = 6e-017
Identities = 153/188 (81%)
Strand = Plus / Plus
Query: 673 aggtcgtcgtagtgcgccgactggccgttctcgatgtcgaagtcgatgccgtcgagcacg 732
|||||||||||||| || | ||||| |||||||||||||||||||||||||||||||
Sbjct: 6282573 aggtcgtcgtagtgggcggggcggccgagctcgatgtcgaagtcgatgccgtcgagcacg 6282632
Query: 733 gcggcgccgagagggcgggacgagccgctgccgcccaggaagttgtcccacaggtagtcg 792
||| |||||| ||||||||| | || |||||| ||| | |||||| |||| ||||
Sbjct: 6282633 gcgtcgccgaaggggcgggacttggagcggccgccaaggtaaaagtcccagaggtggtcg 6282692
Query: 793 gccacgctgttggcgtcgtcggtggaggagaggccgtagctgccgctggcgccgccgatg 852
|| ||| ||||||||| | |||||| |||| ||| |||||| || |||||||||||
Sbjct: 6282693 gcgacggccttggcgtcggccttggaggcgagggagtacctgccgatgccgccgccgatg 6282752
Query: 853 gagaggag 860
||||||||
Sbjct: 6282753 gagaggag 6282760
Score = 52.0 bits (26), Expect = 7e-004
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 606 gtccgggtaggggcactgcggcgccgccgtcagc 639
||||||| | ||||||||||||||||||||||||
Sbjct: 6282072 gtccgggaacgggcactgcggcgccgccgtcagc 6282105
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 95.6 bits (48), Expect = 6e-017
Identities = 153/188 (81%)
Strand = Plus / Plus
Query: 673 aggtcgtcgtagtgcgccgactggccgttctcgatgtcgaagtcgatgccgtcgagcacg 732
|||||||||||||| || | ||||| |||||||||||||||||||||||||||||||
Sbjct: 13629935 aggtcgtcgtagtgggcggggcggccgagctcgatgtcgaagtcgatgccgtcgagcacg 13629994
Query: 733 gcggcgccgagagggcgggacgagccgctgccgcccaggaagttgtcccacaggtagtcg 792
||| |||||| ||||||||| | || |||||| ||| | |||||| |||| ||||
Sbjct: 13629995 gcgtcgccgaaggggcgggacttggagcggccgccaaggtaaaagtcccagaggtggtcg 13630054
Query: 793 gccacgctgttggcgtcgtcggtggaggagaggccgtagctgccgctggcgccgccgatg 852
|| ||| ||||||||| | |||||| |||| ||| |||||| || |||||||||||
Sbjct: 13630055 gcgacggccttggcgtcggccttggaggcgagggagtacctgccgatgccgccgccgatg 13630114
Query: 853 gagaggag 860
||||||||
Sbjct: 13630115 gagaggag 13630122
Score = 52.0 bits (26), Expect = 7e-004
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 606 gtccgggtaggggcactgcggcgccgccgtcagc 639
||||||| | ||||||||||||||||||||||||
Sbjct: 13629434 gtccgggaacgggcactgcggcgccgccgtcagc 13629467
>emb|AL662963.3|OSJN00163 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0020I02,
complete sequence
Length = 172435
Score = 95.6 bits (48), Expect = 6e-017
Identities = 153/188 (81%)
Strand = Plus / Plus
Query: 673 aggtcgtcgtagtgcgccgactggccgttctcgatgtcgaagtcgatgccgtcgagcacg 732
|||||||||||||| || | ||||| |||||||||||||||||||||||||||||||
Sbjct: 63629 aggtcgtcgtagtgggcggggcggccgagctcgatgtcgaagtcgatgccgtcgagcacg 63688
Query: 733 gcggcgccgagagggcgggacgagccgctgccgcccaggaagttgtcccacaggtagtcg 792
||| |||||| ||||||||| | || |||||| ||| | |||||| |||| ||||
Sbjct: 63689 gcgtcgccgaaggggcgggacttggagcggccgccaaggtaaaagtcccagaggtggtcg 63748
Query: 793 gccacgctgttggcgtcgtcggtggaggagaggccgtagctgccgctggcgccgccgatg 852
|| ||| ||||||||| | |||||| |||| ||| |||||| || |||||||||||
Sbjct: 63749 gcgacggccttggcgtcggccttggaggcgagggagtacctgccgatgccgccgccgatg 63808
Query: 853 gagaggag 860
||||||||
Sbjct: 63809 gagaggag 63816
Score = 52.0 bits (26), Expect = 7e-004
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 606 gtccgggtaggggcactgcggcgccgccgtcagc 639
||||||| | ||||||||||||||||||||||||
Sbjct: 63128 gtccgggaacgggcactgcggcgccgccgtcagc 63161
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 95.6 bits (48), Expect = 6e-017
Identities = 153/188 (81%)
Strand = Plus / Plus
Query: 673 aggtcgtcgtagtgcgccgactggccgttctcgatgtcgaagtcgatgccgtcgagcacg 732
|||||||||||||| || | ||||| |||||||||||||||||||||||||||||||
Sbjct: 16534396 aggtcgtcgtagtgggcggggcggccgagctcgatgtcgaagtcgatgccgtcgagcacg 16534455
Query: 733 gcggcgccgagagggcgggacgagccgctgccgcccaggaagttgtcccacaggtagtcg 792
||| |||||| ||||||||| | || |||||| ||| | |||||| |||| ||||
Sbjct: 16534456 gcgtcgccgaaggggcgggacttggagcggccgccaaggtaaaagtcccagaggtggtcg 16534515
Query: 793 gccacgctgttggcgtcgtcggtggaggagaggccgtagctgccgctggcgccgccgatg 852
|| ||| ||||||||| | |||||| |||| ||| |||||| || |||||||||||
Sbjct: 16534516 gcgacggccttggcgtcggccttggaggcgagggagtacctgccgatgccgccgccgatg 16534575
Query: 853 gagaggag 860
||||||||
Sbjct: 16534576 gagaggag 16534583
Score = 52.0 bits (26), Expect = 7e-004
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 606 gtccgggtaggggcactgcggcgccgccgtcagc 639
||||||| | ||||||||||||||||||||||||
Sbjct: 16533895 gtccgggaacgggcactgcggcgccgccgtcagc 16533928
>gb|CV723079.1|CV723079 root--02-G23.g1 Rice root lambda phage cDNA library (root) Oryza
sativa (japonica cultivar-group) cDNA clone
root--02-G23, mRNA sequence
Length = 475
Score = 79.8 bits (40), Expect = 3e-012
Identities = 138/168 (82%), Gaps = 2/168 (1%)
Strand = Plus / Minus
Query: 700 ttctcgatgtcgaagtcgatgccgtcgagcacggcggcgccgagagggcgggacgagccg 759
||||| |||||||||||||||||||||||||| ||| ||||||| ||||| || |
Sbjct: 431 ttctctatgtcgaagtcgatgccgtcgagcaccgcgtcgccgagggggcgcgagtccgag 372
Query: 760 ctgccgcccaggaagttgtcccacaggtagtcggccacgctgttggcgtcgtcggtggag 819
|||||||| |||||| ||| ||| ||||||||||| |||| |||||||||| ||||
Sbjct: 371 ctgccgccgaggaaggtgttccagaggtagtcggcgacgccacgcgcgtcgtcggcggag 312
Query: 820 gagaggccgtagctg-ccgctggcgccgccgatggagaggagcacctt 866
|||||| ||| ||| || || ||||||||| |||||||||||||||
Sbjct: 311 gagagggagta-ctgacctctctcgccgccgagggagaggagcacctt 265
>dbj|AK106178.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-C10, full
insert sequence
Length = 1187
Score = 79.8 bits (40), Expect = 3e-012
Identities = 138/168 (82%), Gaps = 2/168 (1%)
Strand = Plus / Minus
Query: 700 ttctcgatgtcgaagtcgatgccgtcgagcacggcggcgccgagagggcgggacgagccg 759
||||| |||||||||||||||||||||||||| ||| ||||||| ||||| || |
Sbjct: 489 ttctctatgtcgaagtcgatgccgtcgagcaccgcgtcgccgagggggcgcgagtccgag 430
Query: 760 ctgccgcccaggaagttgtcccacaggtagtcggccacgctgttggcgtcgtcggtggag 819
|||||||| |||||| ||| ||| ||||||||||| |||| |||||||||| ||||
Sbjct: 429 ctgccgccgaggaaggtgttccagaggtagtcggcgacgccacgcgcgtcgtcggcggag 370
Query: 820 gagaggccgtagctg-ccgctggcgccgccgatggagaggagcacctt 866
|||||| ||| ||| || || ||||||||| |||||||||||||||
Sbjct: 369 gagagggagta-ctgacctctctcgccgccgagggagaggagcacctt 323
Score = 58.0 bits (29), Expect = 1e-005
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 604 gcgtccgggtaggggcactgcggcgccgccgtcagca 640
||||||||||| |||||||||||||||||||| ||||
Sbjct: 588 gcgtccgggtacgggcactgcggcgccgccgtgagca 552
>ref|NM_192104.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 909
Score = 79.8 bits (40), Expect = 3e-012
Identities = 138/168 (82%), Gaps = 2/168 (1%)
Strand = Plus / Minus
Query: 700 ttctcgatgtcgaagtcgatgccgtcgagcacggcggcgccgagagggcgggacgagccg 759
||||| |||||||||||||||||||||||||| ||| ||||||| ||||| || |
Sbjct: 470 ttctctatgtcgaagtcgatgccgtcgagcaccgcgtcgccgagggggcgcgagtccgag 411
Query: 760 ctgccgcccaggaagttgtcccacaggtagtcggccacgctgttggcgtcgtcggtggag 819
|||||||| |||||| ||| ||| ||||||||||| |||| |||||||||| ||||
Sbjct: 410 ctgccgccgaggaaggtgttccagaggtagtcggcgacgccacgcgcgtcgtcggcggag 351
Query: 820 gagaggccgtagctg-ccgctggcgccgccgatggagaggagcacctt 866
|||||| ||| ||| || || ||||||||| |||||||||||||||
Sbjct: 350 gagagggagta-ctgacctctctcgccgccgagggagaggagcacctt 304
Score = 58.0 bits (29), Expect = 1e-005
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 604 gcgtccgggtaggggcactgcggcgccgccgtcagca 640
||||||||||| |||||||||||||||||||| ||||
Sbjct: 569 gcgtccgggtacgggcactgcggcgccgccgtgagca 533
>dbj|AP003455.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0519D04
Length = 193068
Score = 79.8 bits (40), Expect = 3e-012
Identities = 138/168 (82%), Gaps = 2/168 (1%)
Strand = Plus / Plus
Query: 700 ttctcgatgtcgaagtcgatgccgtcgagcacggcggcgccgagagggcgggacgagccg 759
||||| |||||||||||||||||||||||||| ||| ||||||| ||||| || |
Sbjct: 63937 ttctctatgtcgaagtcgatgccgtcgagcaccgcgtcgccgagggggcgcgagtccgag 63996
Query: 760 ctgccgcccaggaagttgtcccacaggtagtcggccacgctgttggcgtcgtcggtggag 819
|||||||| |||||| ||| ||| ||||||||||| |||| |||||||||| ||||
Sbjct: 63997 ctgccgccgaggaaggtgttccagaggtagtcggcgacgccacgcgcgtcgtcggcggag 64056
Query: 820 gagaggccgtagctg-ccgctggcgccgccgatggagaggagcacctt 866
|||||| ||| ||| || || ||||||||| |||||||||||||||
Sbjct: 64057 gagagggagta-ctgacctctctcgccgccgagggagaggagcacctt 64103
Score = 58.0 bits (29), Expect = 1e-005
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 604 gcgtccgggtaggggcactgcggcgccgccgtcagca 640
||||||||||| |||||||||||||||||||| ||||
Sbjct: 63838 gcgtccgggtacgggcactgcggcgccgccgtgagca 63874
>dbj|AB110201.1| Oryza sativa (japonica cultivar-group) mRNA for chitinase, partial
cds, clone: pNS-C4A31
Length = 1119
Score = 79.8 bits (40), Expect = 3e-012
Identities = 138/168 (82%), Gaps = 2/168 (1%)
Strand = Plus / Minus
Query: 700 ttctcgatgtcgaagtcgatgccgtcgagcacggcggcgccgagagggcgggacgagccg 759
||||| |||||||||||||||||||||||||| ||| ||||||| ||||| || |
Sbjct: 424 ttctctatgtcgaagtcgatgccgtcgagcaccgcgtcgccgagggggcgcgagtccgag 365
Query: 760 ctgccgcccaggaagttgtcccacaggtagtcggccacgctgttggcgtcgtcggtggag 819
|||||||| |||||| ||| ||| ||||||||||| |||| |||||||||| ||||
Sbjct: 364 ctgccgccgaggaaggtgttccagaggtagtcggcgacgccacgcgcgtcgtcggcggag 305
Query: 820 gagaggccgtagctg-ccgctggcgccgccgatggagaggagcacctt 866
|||||| ||| ||| || || ||||||||| |||||||||||||||
Sbjct: 304 gagagggagta-ctgacctctctcgccgccgagggagaggagcacctt 258
Score = 58.0 bits (29), Expect = 1e-005
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 604 gcgtccgggtaggggcactgcggcgccgccgtcagca 640
||||||||||| |||||||||||||||||||| ||||
Sbjct: 523 gcgtccgggtacgggcactgcggcgccgccgtgagca 487
>gb|CB661162.1|CB661162 OSJNEd03K16.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd03K16 5', mRNA sequence
Length = 751
Score = 75.8 bits (38), Expect = 5e-011
Identities = 88/102 (86%), Gaps = 2/102 (1%)
Strand = Plus / Minus
Query: 538 gggttgttgtagaactgtatccacacgttgtcgaactggcccgt-ctgcagcgccggccc 596
||||||||||||||||| | |||||||| ||||||| |||| || ||| ||||| ||
Sbjct: 663 gggttgttgtagaactgcacccacacgtagtcgaacaggccggtgctg-agcgcgacgcc 605
Query: 597 cagcgacgcgtccgggtaggggcactgcggcgccgccgtcag 638
||||||||||||||| |||||||||| ||||||||||||||
Sbjct: 604 gagcgacgcgtccgggaaggggcactgtggcgccgccgtcag 563
Score = 56.0 bits (28), Expect = 5e-005
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 696 gccgttctcgatgtcgaagtcgatgccgtcgagcacggcggcgccgag 743
|||| ||||||||||||||||||||||||| | |||||| |||||||
Sbjct: 484 gccgctctcgatgtcgaagtcgatgccgtccatgacggcgtcgccgag 437
Score = 56.0 bits (28), Expect = 5e-005
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 1040 tgccttcgttgccgttctggccccagtacactgcgatgttgccggcgc 1087
|||| ||||||||||||||||||||||| | ||||||| ||||||||
Sbjct: 140 tgccctcgttgccgttctggccccagtagatcgcgatgtcgccggcgc 93
>gb|CB661163.1|CB661163 OSJNEd03K16.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd03K16 3', mRNA sequence
Length = 730
Score = 75.8 bits (38), Expect = 5e-011
Identities = 88/102 (86%), Gaps = 2/102 (1%)
Strand = Plus / Plus
Query: 538 gggttgttgtagaactgtatccacacgttgtcgaactggcccgt-ctgcagcgccggccc 596
||||||||||||||||| | |||||||| ||||||| |||| || ||| ||||| ||
Sbjct: 429 gggttgttgtagaactgcacccacacgtagtcgaacaggccggtgctg-agcgcgacgcc 487
Query: 597 cagcgacgcgtccgggtaggggcactgcggcgccgccgtcag 638
||||||||||||||| |||||||||| ||||||||||||||
Sbjct: 488 gagcgacgcgtccgggaaggggcactgtggcgccgccgtcag 529
Score = 56.0 bits (28), Expect = 5e-005
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 696 gccgttctcgatgtcgaagtcgatgccgtcgagcacggcggcgccgag 743
|||| ||||||||||||||||||||||||| | |||||| |||||||
Sbjct: 608 gccgctctcgatgtcgaagtcgatgccgtccatgacggcgtcgccgag 655
>dbj|AB003195.1| Oryza sativa (japonica cultivar-group) mRNA for basic class III
chitinase OsChib3b, complete cds
Length = 1109
Score = 75.8 bits (38), Expect = 5e-011
Identities = 88/102 (86%), Gaps = 2/102 (1%)
Strand = Plus / Minus
Query: 538 gggttgttgtagaactgtatccacacgttgtcgaactggcccgt-ctgcagcgccggccc 596
||||||||||||||||| | |||||||| ||||||| |||| || ||| ||||| ||
Sbjct: 681 gggttgttgtagaactgcacccacacgtagtcgaacaggccggtgctg-agcgcgacgcc 623
Query: 597 cagcgacgcgtccgggtaggggcactgcggcgccgccgtcag 638
||||||||||||||| |||||||||| ||||||||||||||
Sbjct: 622 gagcgacgcgtccgggaaggggcactgtggcgccgccgtcag 581
Score = 56.0 bits (28), Expect = 5e-005
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 696 gccgttctcgatgtcgaagtcgatgccgtcgagcacggcggcgccgag 743
|||| ||||||||||||||||||||||||| | |||||| |||||||
Sbjct: 502 gccgctctcgatgtcgaagtcgatgccgtccatgacggcgtcgccgag 455
Score = 56.0 bits (28), Expect = 5e-005
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 1040 tgccttcgttgccgttctggccccagtacactgcgatgttgccggcgc 1087
|||| ||||||||||||||||||||||| | ||||||| ||||||||
Sbjct: 158 tgccctcgttgccgttctggccccagtagatcgcgatgtcgccggcgc 111
>dbj|D55711.1| Oryza sativa (japonica cultivar-group) mRNA for chitinase, complete
cds
Length = 1096
Score = 75.8 bits (38), Expect = 5e-011
Identities = 88/102 (86%), Gaps = 2/102 (1%)
Strand = Plus / Minus
Query: 538 gggttgttgtagaactgtatccacacgttgtcgaactggcccgt-ctgcagcgccggccc 596
||||||||||||||||| | |||||||| ||||||| |||| || ||| ||||| ||
Sbjct: 655 gggttgttgtagaactgcacccacacgtagtcgaacaggccggtgctg-agcgcgacgcc 597
Query: 597 cagcgacgcgtccgggtaggggcactgcggcgccgccgtcag 638
||||||||||||||| |||||||||| ||||||||||||||
Sbjct: 596 gagcgacgcgtccgggaaggggcactgtggcgccgccgtcag 555
Score = 56.0 bits (28), Expect = 5e-005
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 696 gccgttctcgatgtcgaagtcgatgccgtcgagcacggcggcgccgag 743
|||| ||||||||||||||||||||||||| | |||||| |||||||
Sbjct: 476 gccgctctcgatgtcgaagtcgatgccgtccatgacggcgtcgccgag 429
Score = 56.0 bits (28), Expect = 5e-005
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 1040 tgccttcgttgccgttctggccccagtacactgcgatgttgccggcgc 1087
|||| ||||||||||||||||||||||| | ||||||| ||||||||
Sbjct: 132 tgccctcgttgccgttctggccccagtagatcgcgatgtcgccggcgc 85
>dbj|AK058878.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-007-A04, full
insert sequence
Length = 1193
Score = 75.8 bits (38), Expect = 5e-011
Identities = 88/102 (86%), Gaps = 2/102 (1%)
Strand = Plus / Minus
Query: 538 gggttgttgtagaactgtatccacacgttgtcgaactggcccgt-ctgcagcgccggccc 596
||||||||||||||||| | |||||||| ||||||| |||| || ||| ||||| ||
Sbjct: 681 gggttgttgtagaactgcacccacacgtagtcgaacaggccggtgctg-agcgcgacgcc 623
Query: 597 cagcgacgcgtccgggtaggggcactgcggcgccgccgtcag 638
||||||||||||||| |||||||||| ||||||||||||||
Sbjct: 622 gagcgacgcgtccgggaaggggcactgtggcgccgccgtcag 581
Score = 56.0 bits (28), Expect = 5e-005
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 696 gccgttctcgatgtcgaagtcgatgccgtcgagcacggcggcgccgag 743
|||| ||||||||||||||||||||||||| | |||||| |||||||
Sbjct: 502 gccgctctcgatgtcgaagtcgatgccgtccatgacggcgtcgccgag 455
Score = 56.0 bits (28), Expect = 5e-005
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 1040 tgccttcgttgccgttctggccccagtacactgcgatgttgccggcgc 1087
|||| ||||||||||||||||||||||| | ||||||| ||||||||
Sbjct: 158 tgccctcgttgccgttctggccccagtagatcgcgatgtcgccggcgc 111
>dbj|AK099172.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023091F16, full
insert sequence
Length = 1134
Score = 75.8 bits (38), Expect = 5e-011
Identities = 88/102 (86%), Gaps = 2/102 (1%)
Strand = Plus / Minus
Query: 538 gggttgttgtagaactgtatccacacgttgtcgaactggcccgt-ctgcagcgccggccc 596
||||||||||||||||| | |||||||| ||||||| |||| || ||| ||||| ||
Sbjct: 682 gggttgttgtagaactgcacccacacgtagtcgaacaggccggtgctg-agcgcgacgcc 624
Query: 597 cagcgacgcgtccgggtaggggcactgcggcgccgccgtcag 638
||||||||||||||| |||||||||| ||||||||||||||
Sbjct: 623 gagcgacgcgtccgggaaggggcactgtggcgccgccgtcag 582
Score = 56.0 bits (28), Expect = 5e-005
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 696 gccgttctcgatgtcgaagtcgatgccgtcgagcacggcggcgccgag 743
|||| ||||||||||||||||||||||||| | |||||| |||||||
Sbjct: 503 gccgctctcgatgtcgaagtcgatgccgtccatgacggcgtcgccgag 456
Score = 56.0 bits (28), Expect = 5e-005
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 1040 tgccttcgttgccgttctggccccagtacactgcgatgttgccggcgc 1087
|||| ||||||||||||||||||||||| | ||||||| ||||||||
Sbjct: 159 tgccctcgttgccgttctggccccagtagatcgcgatgtcgccggcgc 112
>dbj|AK103976.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-F10, full
insert sequence
Length = 1134
Score = 75.8 bits (38), Expect = 5e-011
Identities = 88/102 (86%), Gaps = 2/102 (1%)
Strand = Plus / Minus
Query: 538 gggttgttgtagaactgtatccacacgttgtcgaactggcccgt-ctgcagcgccggccc 596
||||||||||||||||| | |||||||| ||||||| |||| || ||| ||||| ||
Sbjct: 680 gggttgttgtagaactgcacccacacgtagtcgaacaggccggtgctg-agcgcgacgcc 622
Query: 597 cagcgacgcgtccgggtaggggcactgcggcgccgccgtcag 638
||||||||||||||| |||||||||| ||||||||||||||
Sbjct: 621 gagcgacgcgtccgggaaggggcactgtggcgccgccgtcag 580
Score = 56.0 bits (28), Expect = 5e-005
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 696 gccgttctcgatgtcgaagtcgatgccgtcgagcacggcggcgccgag 743
|||| ||||||||||||||||||||||||| | |||||| |||||||
Sbjct: 501 gccgctctcgatgtcgaagtcgatgccgtccatgacggcgtcgccgag 454
Score = 56.0 bits (28), Expect = 5e-005
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 1040 tgccttcgttgccgttctggccccagtacactgcgatgttgccggcgc 1087
|||| ||||||||||||||||||||||| | ||||||| ||||||||
Sbjct: 157 tgccctcgttgccgttctggccccagtagatcgcgatgtcgccggcgc 110
>dbj|AK104120.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-C02, full
insert sequence
Length = 1109
Score = 75.8 bits (38), Expect = 5e-011
Identities = 88/102 (86%), Gaps = 2/102 (1%)
Strand = Plus / Minus
Query: 538 gggttgttgtagaactgtatccacacgttgtcgaactggcccgt-ctgcagcgccggccc 596
||||||||||||||||| | |||||||| ||||||| |||| || ||| ||||| ||
Sbjct: 681 gggttgttgtagaactgcacccacacgtagtcgaacaggccggtgctg-agcgcgacgcc 623
Query: 597 cagcgacgcgtccgggtaggggcactgcggcgccgccgtcag 638
||||||||||||||| |||||||||| ||||||||||||||
Sbjct: 622 gagcgacgcgtccgggaaggggcactgtggcgccgccgtcag 581
Score = 56.0 bits (28), Expect = 5e-005
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 696 gccgttctcgatgtcgaagtcgatgccgtcgagcacggcggcgccgag 743
|||| ||||||||||||||||||||||||| | |||||| |||||||
Sbjct: 502 gccgctctcgatgtcgaagtcgatgccgtccatgacggcgtcgccgag 455
Score = 56.0 bits (28), Expect = 5e-005
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 1040 tgccttcgttgccgttctggccccagtacactgcgatgttgccggcgc 1087
|||| ||||||||||||||||||||||| | ||||||| ||||||||
Sbjct: 158 tgccctcgttgccgttctggccccagtagatcgcgatgtcgccggcgc 111
>dbj|AK119310.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-130-G06, full
insert sequence
Length = 3419
Score = 75.8 bits (38), Expect = 5e-011
Identities = 88/102 (86%), Gaps = 2/102 (1%)
Strand = Plus / Plus
Query: 538 gggttgttgtagaactgtatccacacgttgtcgaactggcccgt-ctgcagcgccggccc 596
||||||||||||||||| | |||||||| ||||||| |||| || ||| ||||| ||
Sbjct: 2073 gggttgttgtagaactgcacccacacgtagtcgaacaggccggtgctg-agcgcgacgcc 2131
Query: 597 cagcgacgcgtccgggtaggggcactgcggcgccgccgtcag 638
||||||||||||||| |||||||||| ||||||||||||||
Sbjct: 2132 gagcgacgcgtccgggaaggggcactgtggcgccgccgtcag 2173
Score = 56.0 bits (28), Expect = 5e-005
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 1040 tgccttcgttgccgttctggccccagtacactgcgatgttgccggcgc 1087
|||| ||||||||||||||||||||||| | ||||||| ||||||||
Sbjct: 2596 tgccctcgttgccgttctggccccagtagatcgcgatgtcgccggcgc 2643
Score = 56.0 bits (28), Expect = 5e-005
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 696 gccgttctcgatgtcgaagtcgatgccgtcgagcacggcggcgccgag 743
|||| ||||||||||||||||||||||||| | |||||| |||||||
Sbjct: 2252 gccgctctcgatgtcgaagtcgatgccgtccatgacggcgtcgccgag 2299
>ref|NM_190699.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 891
Score = 75.8 bits (38), Expect = 5e-011
Identities = 88/102 (86%), Gaps = 2/102 (1%)
Strand = Plus / Minus
Query: 538 gggttgttgtagaactgtatccacacgttgtcgaactggcccgt-ctgcagcgccggccc 596
||||||||||||||||| | |||||||| ||||||| |||| || ||| ||||| ||
Sbjct: 626 gggttgttgtagaactgcacccacacgtagtcgaacaggccggtgctg-agcgcgacgcc 568
Query: 597 cagcgacgcgtccgggtaggggcactgcggcgccgccgtcag 638
||||||||||||||| |||||||||| ||||||||||||||
Sbjct: 567 gagcgacgcgtccgggaaggggcactgtggcgccgccgtcag 526
Score = 56.0 bits (28), Expect = 5e-005
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 696 gccgttctcgatgtcgaagtcgatgccgtcgagcacggcggcgccgag 743
|||| ||||||||||||||||||||||||| | |||||| |||||||
Sbjct: 447 gccgctctcgatgtcgaagtcgatgccgtccatgacggcgtcgccgag 400
Score = 56.0 bits (28), Expect = 5e-005
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 1040 tgccttcgttgccgttctggccccagtacactgcgatgttgccggcgc 1087
|||| ||||||||||||||||||||||| | ||||||| ||||||||
Sbjct: 103 tgccctcgttgccgttctggccccagtagatcgcgatgtcgccggcgc 56
>gb|AACV01002130.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002130, whole
genome shotgun sequence
Length = 26507
Score = 73.8 bits (37), Expect = 2e-010
Identities = 139/169 (82%), Gaps = 3/169 (1%)
Strand = Plus / Minus
Query: 700 ttctcgatgtcgaagtcgatgccgtcgagca-cggcggcgccgagagggcgggacgagcc 758
||||| ||||||||||||||||||||||||| ||||| ||||||| ||||| ||
Sbjct: 20062 ttctctatgtcgaagtcgatgccgtcgagcaccggcgtcgccgagggggcgcgagtccga 20003
Query: 759 gctgccgcccaggaagttgtcccacaggtagtcggccacgctgttggcgtcgtcggtgga 818
||||||||| |||||| ||| ||| ||||||||||| |||| |||||||||| |||
Sbjct: 20002 gctgccgccgaggaaggtgttccagaggtagtcggcgacgccacgcgcgtcgtcggcgga 19943
Query: 819 ggagaggccgtagctg-ccgctggcgccgccgatggagaggagcacctt 866
||||||| ||| ||| || || ||||||||| |||||||||||||||
Sbjct: 19942 ggagagggagta-ctgacctctctcgccgccgagggagaggagcacctt 19895
Score = 58.0 bits (29), Expect = 1e-005
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 604 gcgtccgggtaggggcactgcggcgccgccgtcagca 640
||||||||||| |||||||||||||||||||| ||||
Sbjct: 20161 gcgtccgggtacgggcactgcggcgccgccgtgagca 20125
>dbj|AK111427.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-182-H04, full
insert sequence
Length = 1542
Score = 67.9 bits (34), Expect = 1e-008
Identities = 49/54 (90%)
Strand = Plus / Minus
Query: 706 atgtcgaagtcgatgccgtcgagcacggcggcgccgagagggcgggacgagccg 759
|||||||| |||| |||||||||||||||| ||||||| |||||||||| ||||
Sbjct: 802 atgtcgaaatcgacgccgtcgagcacggcgtcgccgagcgggcgggacgcgccg 749
Score = 63.9 bits (32), Expect = 2e-007
Identities = 77/92 (83%)
Strand = Plus / Minus
Query: 538 gggttgttgtagaactgtatccacacgttgtcgaactggcccgtctgcagcgccggcccc 597
||||||||||||||||| | |||||||| ||||||| | ||||| ||||||| |
Sbjct: 1000 gggttgttgtagaactgcacccacacgtggtcgaacagccccgtggcgagcgccgcggcg 941
Query: 598 agcgacgcgtccgggtaggggcactgcggcgc 629
|| |||||||||||||| ||||||||||||||
Sbjct: 940 agggacgcgtccgggtacgggcactgcggcgc 909
Score = 50.1 bits (25), Expect = 0.003
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 1040 tgccttcgttgccgttctggccccagtacactgcgatgttg 1080
|||| ||| ||||||||||||||||||| || |||||||||
Sbjct: 462 tgccctcgctgccgttctggccccagtagacggcgatgttg 422
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,241,787
Number of Sequences: 438736
Number of extensions: 3241787
Number of successful extensions: 21748
Number of sequences better than 0.5: 103
Number of HSP's better than 0.5 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20019
Number of HSP's gapped (non-prelim): 1720
length of query: 1248
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1227
effective length of database: 2,791,206,460
effective search space: 3424810326420
effective search space used: 3424810326420
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)