BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 4548790.2.1
(1044 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK101784.1| Oryza sativa (japonica cultivar-group) cDNA... 737 0.0
dbj|AK119215.1| Oryza sativa (japonica cultivar-group) cDNA... 737 0.0
ref|NM_185168.1| Oryza sativa (japonica cultivar-group), mRNA 737 0.0
gb|AC093018.4| Oryza sativa chromosome 3 BAC OSJNBb0081B07 ... 426 e-116
gb|AACV01008182.1| Oryza sativa (japonica cultivar-group) c... 426 e-116
ref|NT_107188.1| Oryza sativa (japonica cultivar-group) 426 e-116
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 426 e-116
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 426 e-116
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 426 e-116
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 426 e-116
dbj|AK063455.1| Oryza sativa (japonica cultivar-group) cDNA... 317 7e-084
dbj|AK100179.1| Oryza sativa (japonica cultivar-group) cDNA... 186 2e-044
dbj|AK105988.1| Oryza sativa (japonica cultivar-group) cDNA... 186 2e-044
ref|XM_475418.1| Oryza sativa (japonica cultivar-group), p... 186 2e-044
gb|AC144737.2| Oryza sativa (japonica cultivar-group) chrom... 170 1e-039
gb|AACV01012416.1| Oryza sativa (japonica cultivar-group) c... 170 1e-039
ref|NT_107213.1| Oryza sativa (japonica cultivar-group) 170 1e-039
gb|CH401206.1| Oryza sativa (japonica cultivar-group) chrom... 170 1e-039
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 170 1e-039
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 170 1e-039
gb|AU029532.1|AU029532 AU029532 Rice panicle shorter than 3... 153 2e-034
dbj|AK070463.1| Oryza sativa (japonica cultivar-group) cDNA... 153 2e-034
gb|U30477.1|OSU30477 Oryza sativa (japonica cultivar-group)... 153 2e-034
ref|NM_190380.1| Oryza sativa (japonica cultivar-group), p... 153 2e-034
gb|AACV01002595.1| Oryza sativa (japonica cultivar-group) c... 147 1e-032
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 147 1e-032
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 147 1e-032
dbj|AP003348.3| Oryza sativa (japonica cultivar-group) geno... 147 1e-032
dbj|AP003230.4| Oryza sativa (japonica cultivar-group) geno... 147 1e-032
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 147 1e-032
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 147 1e-032
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 147 1e-032
gb|C91662.1|C91662 C91662 Rice panicle shorter than 3cm Ory... 139 3e-030
dbj|AK070133.1| Oryza sativa (japonica cultivar-group) cDNA... 135 5e-029
gb|AC091774.7| Oryza sativa chromosome 6 BAC OJ1540_H01 gen... 135 5e-029
dbj|AP003769.3| Oryza sativa (japonica cultivar-group) geno... 135 5e-029
gb|AACV01014938.1| Oryza sativa (japonica cultivar-group) c... 135 5e-029
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 135 5e-029
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 135 5e-029
gb|DQ061068.1| Oryza sativa (japonica cultivar-group) alpha... 135 5e-029
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 135 5e-029
gb|C91750.2|C91750 C91750 Rice panicle shorter than 3cm Ory... 127 1e-026
gb|CB645779.1|CB645779 OSJNEb07L24.f OSJNEb Oryza sativa (j... 125 5e-026
dbj|AK073572.1| Oryza sativa (japonica cultivar-group) cDNA... 125 5e-026
gb|AACV01005399.1| Oryza sativa (japonica cultivar-group) c... 125 5e-026
ref|XM_467754.1| Oryza sativa (japonica cultivar-group), mRNA 125 5e-026
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 125 5e-026
ref|XM_506968.1| PREDICTED Oryza sativa (japonica cultivar-... 125 5e-026
dbj|AP004114.3| Oryza sativa (japonica cultivar-group) geno... 125 5e-026
dbj|AP005297.3| Oryza sativa (japonica cultivar-group) geno... 125 5e-026
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 125 5e-026
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 125 5e-026
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 125 5e-026
gb|C72427.1|C72427 C72427 Rice panicle at flowering stage O... 123 2e-025
gb|BE039217.1|BE039217 OA01E03 OA Oryza sativa (japonica cu... 117 1e-023
dbj|AK107334.1| Oryza sativa (japonica cultivar-group) cDNA... 117 1e-023
gb|CV730571.1|CV730571 FLO--04-C21.b1 Rice flower lambda ph... 107 1e-020
gb|AC087550.3| Oryza sativa (japonica cultivar-group) chrom... 107 1e-020
gb|AACV01021633.1| Oryza sativa (japonica cultivar-group) c... 107 1e-020
ref|NM_196687.1| Oryza sativa (japonica cultivar-group) put... 107 1e-020
ref|NT_080067.1| Oryza sativa (japonica cultivar-group) chr... 107 1e-020
gb|CH401254.1| Oryza sativa (japonica cultivar-group) chrom... 107 1e-020
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 107 1e-020
gb|DQ061067.1| Oryza sativa (japonica cultivar-group) alpha... 107 1e-020
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 107 1e-020
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 107 1e-020
ref|XM_470717.1| Oryza sativa (japonica cultivar-group), mRNA 103 2e-019
ref|XM_493787.1| Oryza sativa (japonica cultivar-group), Oz... 103 2e-019
ref|NT_036312.3| Oryza sativa (japonica cultivar-group) 103 2e-019
dbj|AP000837.1| Oryza sativa (japonica cultivar-group) geno... 103 2e-019
gb|DQ061062.1| Oryza sativa (japonica cultivar-group) alpha... 103 2e-019
gb|DQ062981.1| Oryza sativa (japonica cultivar-group) alpha... 103 2e-019
dbj|AK107698.1| Oryza sativa (japonica cultivar-group) cDNA... 98 1e-017
dbj|AK111273.1| Oryza sativa (japonica cultivar-group) cDNA... 94 2e-016
gb|AC133398.4| Oryza sativa chromosome 3 BAC OSJNBa0083F15 ... 94 2e-016
gb|AACV01006963.1| Oryza sativa (japonica cultivar-group) c... 94 2e-016
ref|XM_468791.1| Oryza sativa (japonica cultivar-group), mRNA 94 2e-016
ref|NT_079921.2| Oryza sativa (japonica cultivar-group) 94 2e-016
gb|CH401174.1| Oryza sativa (japonica cultivar-group) chrom... 94 2e-016
gb|AU222840.1|AU222840 AU222840 Rice shoot Oryza sativa (ja... 92 7e-016
emb|Y07782.1|OSEXPANSI Oryza sativa expansin (Os-EXP-1) mRN... 92 7e-016
dbj|AK069548.1| Oryza sativa (japonica cultivar-group) cDNA... 92 7e-016
gb|AACV01008335.1| Oryza sativa (japonica cultivar-group) c... 92 7e-016
ref|XM_474982.1| Oryza sativa (japonica cultivar-group), p... 92 7e-016
ref|NT_107205.1| Oryza sativa (japonica cultivar-group) 92 7e-016
ref|NT_107192.1| Oryza sativa (japonica cultivar-group) 92 7e-016
gb|CH401180.1| Oryza sativa (japonica cultivar-group) chrom... 92 7e-016
emb|AL731598.2|OSJN00248 Oryza sativa genomic DNA, chromoso... 92 7e-016
gb|AC125496.3| Oryza sativa (japonica cultivar-group) chrom... 92 7e-016
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 92 7e-016
gb|AU078708.1|AU078708 AU078708 Rice cDNA from immature lea... 90 3e-015
gb|AU078709.1|AU078709 AU078709 Rice cDNA from immature lea... 90 3e-015
gb|AC084766.8| Oryza sativa chromosome 3 BAC OSJNBb0048D20 ... 90 3e-015
gb|AACV01000668.1| Oryza sativa (japonica cultivar-group) c... 90 3e-015
gb|AACV01006741.1| Oryza sativa (japonica cultivar-group) c... 90 3e-015
ref|NT_079854.2| Oryza sativa (japonica cultivar-group) 90 3e-015
gb|CH401164.1| Oryza sativa (japonica cultivar-group) chrom... 90 3e-015
dbj|AP004128.1| Oryza sativa (japonica cultivar-group) chro... 86 4e-014
gb|AACV01003830.1| Oryza sativa (japonica cultivar-group) c... 86 4e-014
dbj|AP005428.2| Oryza sativa (japonica cultivar-group) geno... 86 4e-014
ref|NT_107178.1| Oryza sativa (japonica cultivar-group) 86 4e-014
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 86 4e-014
gb|C25149.1|C25149 C25149 Rice shoot Oryza sativa (japonica... 84 2e-013
gb|AU081601.1|AU081601 AU081601 Rice shoot Oryza sativa (ja... 84 2e-013
gb|AC105730.2| Oryza sativa (japonica cultivar-group) chrom... 84 2e-013
gb|AC134233.3| Oryza sativa (japonica cultivar-group) chrom... 84 2e-013
gb|AACV01003829.1| Oryza sativa (japonica cultivar-group) c... 84 2e-013
gb|AACV01005896.1| Oryza sativa (japonica cultivar-group) c... 84 2e-013
ref|NT_079917.2| Oryza sativa (japonica cultivar-group) 84 2e-013
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 84 2e-013
gb|DQ061055.1| Oryza sativa (japonica cultivar-group) alpha... 84 2e-013
gb|DQ061057.1| Oryza sativa (japonica cultivar-group) alpha... 84 2e-013
gb|DQ061066.1| Oryza sativa (japonica cultivar-group) alpha... 84 2e-013
gb|AACV01003833.1| Oryza sativa (japonica cultivar-group) c... 82 7e-013
gb|AACV01006557.1| Oryza sativa (japonica cultivar-group) c... 82 7e-013
gb|DQ061063.1| Oryza sativa (japonica cultivar-group) alpha... 82 7e-013
gb|DQ061065.1| Oryza sativa (japonica cultivar-group) alpha... 78 1e-011
gb|CG408353.1|CG408353 Ds43 Ds insertion lines Oryza sativa... 74 2e-010
gb|AU031005.1|AU031005 AU031005 Rice cDNA from immature lea... 74 2e-010
gb|AACV01003831.1| Oryza sativa (japonica cultivar-group) c... 74 2e-010
gb|DQ061064.1| Oryza sativa (japonica cultivar-group) alpha... 74 2e-010
gb|AU029531.1|AU029531 AU029531 Rice panicle shorter than 3... 72 7e-010
ref|NM_196686.1| Oryza sativa (japonica cultivar-group) put... 72 7e-010
gb|DQ061060.1| Oryza sativa (japonica cultivar-group) alpha... 72 7e-010
gb|CA755804.1|CA755804 BR030028000_PLATE_G10_79_083.ab1 OA ... 70 3e-009
gb|C25440.2|C25440 C25440 Rice shoot Oryza sativa (japonica... 70 3e-009
gb|AACV01005899.1| Oryza sativa (japonica cultivar-group) c... 70 3e-009
gb|D49095.1|D49095 RICS15755A Rice green shoot Oryza sativa... 68 1e-008
gb|AACV01009919.1| Oryza sativa (japonica cultivar-group) c... 68 1e-008
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 68 1e-008
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 68 1e-008
gb|DQ061056.1| Oryza sativa (japonica cultivar-group) alpha... 68 1e-008
gb|D40668.1|D40668 RICS2770A Rice shoot Oryza sativa (japon... 66 4e-008
gb|D40812.1|D40812 RICS2968A Rice shoot Oryza sativa (japon... 66 4e-008
gb|AU078731.1|AU078731 AU078731 Rice shoot Oryza sativa (ja... 66 4e-008
gb|AU078739.1|AU078739 AU078739 Rice shoot Oryza sativa (ja... 66 4e-008
gb|AU081604.1|AU081604 AU081604 Rice shoot Oryza sativa (ja... 66 4e-008
gb|AU081607.1|AU081607 AU081607 Rice shoot Oryza sativa (ja... 66 4e-008
gb|AU081609.1|AU081609 AU081609 Rice shoot Oryza sativa (ja... 66 4e-008
gb|AU222903.1|AU222903 AU222903 Rice shoot Oryza sativa (ja... 66 4e-008
gb|AU223012.1|AU223012 AU223012 Rice shoot Oryza sativa (ja... 66 4e-008
gb|AACV01005898.1| Oryza sativa (japonica cultivar-group) c... 66 4e-008
gb|DQ061059.1| Oryza sativa (japonica cultivar-group) alpha... 66 4e-008
dbj|AK111100.1| Oryza sativa (japonica cultivar-group) cDNA... 64 2e-007
gb|AC007789.1| Oryza sativa BAC OSJNBa0049B20 genomic seque... 64 2e-007
gb|AACV01000580.1| Oryza sativa (japonica cultivar-group) c... 64 2e-007
ref|NM_188790.1| Oryza sativa (japonica cultivar-group), p... 64 2e-007
dbj|AP002865.1| Oryza sativa (japonica cultivar-group) geno... 64 2e-007
gb|DQ061061.1| Oryza sativa (japonica cultivar-group) alpha... 64 2e-007
gb|D39423.1|D39423 RICS0736A Rice shoot Oryza sativa (japon... 62 6e-007
gb|D41260.1|D41260 RICS3629A Rice shoot Oryza sativa (japon... 62 6e-007
gb|D41419.1|D41419 RICS3911A Rice shoot Oryza sativa (japon... 62 6e-007
dbj|AK062225.1| Oryza sativa (japonica cultivar-group) cDNA... 62 6e-007
dbj|AK066414.1| Oryza sativa (japonica cultivar-group) cDNA... 62 6e-007
gb|AC145273.2| Oryza sativa (japonica cultivar-group) chrom... 62 6e-007
gb|AACV01005900.1| Oryza sativa (japonica cultivar-group) c... 62 6e-007
gb|AACV01010380.1| Oryza sativa (japonica cultivar-group) c... 62 6e-007
gb|AACV01011535.1| Oryza sativa (japonica cultivar-group) c... 62 6e-007
ref|XM_473658.1| Oryza sativa (japonica cultivar-group), p... 62 6e-007
ref|NT_079865.2| Oryza sativa (japonica cultivar-group) 62 6e-007
ref|NT_107229.1| Oryza sativa (japonica cultivar-group) 62 6e-007
gb|CH401200.1| Oryza sativa (japonica cultivar-group) chrom... 62 6e-007
emb|AL662987.3|OSJN00188 Oryza sativa genomic DNA, chromoso... 62 6e-007
gb|AU030503.1|AU030503 AU030503 Rice cDNA from immature lea... 60 3e-006
gb|AU078737.1|AU078737 AU078737 Rice shoot Oryza sativa (ja... 60 3e-006
gb|CB645780.1|CB645780 OSJNEb07L24.r OSJNEb Oryza sativa (j... 60 3e-006
dbj|AK070505.1| Oryza sativa (japonica cultivar-group) cDNA... 60 3e-006
dbj|AP004587.3| Oryza sativa (japonica cultivar-group) geno... 60 3e-006
dbj|AP005544.3| Oryza sativa (japonica cultivar-group) geno... 60 3e-006
gb|AACV01018997.1| Oryza sativa (japonica cultivar-group) c... 60 3e-006
ref|XM_483792.1| Oryza sativa (japonica cultivar-group), mRNA 60 3e-006
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 60 3e-006
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 60 3e-006
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 60 3e-006
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 60 3e-006
gb|AU078738.1|AU078738 AU078738 Rice shoot Oryza sativa (ja... 58 1e-005
gb|C73835.1|C73835 C73835 Rice panicle (longer than 10cm) O... 56 4e-005
gb|C91713.1|C91713 C91713 Rice panicle shorter than 3cm Ory... 56 4e-005
gb|D23861.1|D23861 RICR0448A Rice root Oryza sativa (japoni... 54 2e-004
gb|CV723142.1|CV723142 root--02-K01.g1 Rice root lambda pha... 54 2e-004
dbj|AB033663.1| Oryza sativa (japonica cultivar-group) DNA,... 54 2e-004
dbj|AK060313.1| Oryza sativa (japonica cultivar-group) cDNA... 54 2e-004
gb|AC092697.6| Oryza sativa chromosome 10 BAC OSJNBb0060I05... 54 2e-004
gb|AC130731.2| Oryza sativa (japonica cultivar-group) chrom... 54 2e-004
gb|U30479.1|OSU30479 Oryza sativa (japonica cultivar-group)... 54 2e-004
dbj|AP007206.1| Oryza sativa (japonica cultivar-group) chro... 54 2e-004
gb|AACV01011538.1| Oryza sativa (japonica cultivar-group) c... 54 2e-004
gb|AACV01019807.1| Oryza sativa (japonica cultivar-group) c... 54 2e-004
gb|AACV01021998.1| Oryza sativa (japonica cultivar-group) c... 54 2e-004
dbj|AP000616.2| Oryza sativa (japonica cultivar-group) geno... 54 2e-004
ref|NM_197539.1| Oryza sativa (japonica cultivar-group) put... 54 2e-004
ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chr... 54 2e-004
ref|NM_188792.1| Oryza sativa (japonica cultivar-group), p... 54 2e-004
ref|NT_107230.2| Oryza sativa (japonica cultivar-group) 54 2e-004
ref|NM_185356.1| Oryza sativa (japonica cultivar-group), mRNA 54 2e-004
gb|CH401242.1| Oryza sativa (japonica cultivar-group) chrom... 54 2e-004
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 54 2e-004
gb|DQ061054.1| Oryza sativa (japonica cultivar-group) alpha... 54 2e-004
gb|DQ061058.1| Oryza sativa (japonica cultivar-group) alpha... 54 2e-004
dbj|AP003938.1| Oryza sativa (japonica cultivar-group) chro... 50 0.002
gb|AC133338.2| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
dbj|AK101940.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.002
ref|NT_107233.1| Oryza sativa (japonica cultivar-group) 50 0.002
dbj|AP003539.3| Oryza sativa (japonica cultivar-group) geno... 50 0.002
gb|AACV01014579.1| Oryza sativa (japonica cultivar-group) c... 50 0.002
gb|AQ863234.1|AQ863234 nbeb0020H17f CUGI Rice BAC Library (... 48 0.010
gb|CZ555785.1|CZ555785 M0028867 AS_TRIM_TDNA_B1 Oryza sativ... 48 0.010
gb|CZ555791.1|CZ555791 M0028881 AS_TRIM_TDNA_B1 Oryza sativ... 48 0.010
gb|D40432.1|D40432 RICS2408A Rice shoot Oryza sativa (japon... 48 0.010
gb|D47507.1|D47507 RICS13050A Rice green shoot Oryza sativa... 48 0.010
gb|AU172682.1|AU172682 AU172682 Rice panicle at flowering s... 48 0.010
dbj|AK071328.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.010
emb|AL731742.3|CNS08C7R Oryza sativa chromosome 12, . BAC O... 48 0.010
gb|AY100692.1| Oryza sativa (japonica cultivar-group) alpha... 48 0.010
ref|NT_107150.1| Oryza sativa (japonica cultivar-group) 48 0.010
gb|AACV01025197.1| Oryza sativa (japonica cultivar-group) c... 48 0.010
gb|CH401281.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.010
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.010
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 48 0.010
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.010
gb|D39413.1|D39413 RICS0721A Rice shoot Oryza sativa (japon... 46 0.038
gb|AACV01014937.1| Oryza sativa (japonica cultivar-group) c... 46 0.038
gb|AC104708.2| Oryza sativa (japonica cultivar-group) chrom... 44 0.15
gb|AACV01012132.1| Oryza sativa (japonica cultivar-group) c... 44 0.15
ref|NT_107212.1| Oryza sativa (japonica cultivar-group) 44 0.15
>dbj|AK101784.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033065B20, full
insert sequence
Length = 1319
Score = 737 bits (372), Expect = 0.0
Identities = 607/684 (88%), Gaps = 1/684 (0%)
Strand = Plus / Plus
Query: 26 gcgcgcacgccacgttctacggcggcagcgacgcttttggctttatgggcggggcctgcg 85
|||||||||| ||||||||||| ||||||||||| | || ||||||||||| ||||
Sbjct: 335 gcgcgcacgcaacgttctacgggggcagcgacgcgtcagggacgatgggcggggcgtgcg 394
Query: 86 ggtacggcaacctgtgacagccaggggtacggcgtgaacaacgcggcgctgagcacggcg 145
||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 395 ggtacgggaacctgt-acagccaggggtacggggtgaacaacgcggcgctgagcacggcg 453
Query: 146 ctgttcgacgaggggctccgctgcggcgcgtgcttcgagatcaggtgcgaggagcagccc 205
|||||| || |||| |||||||||||||||||||||||| ||||| | | ||||||
Sbjct: 454 ctgttcaactccgggcagagctgcggcgcgtgcttcgagatcaagtgcgtgaaccagccc 513
Query: 206 gggtggcggtggtgccggccagggaggccctccatcctggtcacggccaccaacttctgc 265
|||||| |||||||| || ||||| ||||||||||| |||| |||||||||||||||
Sbjct: 514 gggtgggagtggtgccacccggggagcccctccatcctcatcaccgccaccaacttctgc 573
Query: 266 ccgcccaactacgcgctcccctccgacgacggcggctggtgcaacccgccccgcccgcac 325
|||||||||||||| |||||||||||| ||||||||||||||||||| || ||||| |||
Sbjct: 574 ccgcccaactacgccctcccctccgacaacggcggctggtgcaaccctcctcgcccccac 633
Query: 326 ttcgacctcgccatgcccatgttcctccacatcgccgagtaccgcgccggcatcgtgccc 385
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 634 ttcgacctcgccatgcccatgttcctccacatcgccgagtaccgcgccggcatcgtcccc 693
Query: 386 gtctcctaccgccgggtgccgtgccgcaagtccggcggggtgcggttcacaatcaacggc 445
|||||||||||||||||||||||| | ||| || ||||| |||||||| || |||||
Sbjct: 694 gtctcctaccgccgggtgccgtgcaggaagaagggaggggttcggttcacgataaacggg 753
Query: 446 ttccggtacttcaacctggtgctgatcacgaacgtggccggcgcgggggacgtggtgcgc 505
||| ||||||||||||||||||||||||||||||||||||| || |||||| | ||| |
Sbjct: 754 ttcaggtacttcaacctggtgctgatcacgaacgtggccggggccggggacatcgtgagg 813
Query: 506 gcgagcgtcaaggcggccagcaccgggtggctgcccatgtccaggaactggggccagaac 565
|||||||| |||| | | |||||||||||| |||||||||| |||||||||||||||||
Sbjct: 814 gcgagcgtgaaggggacgagcaccgggtggatgcccatgtcgcggaactggggccagaac 873
Query: 566 tggcagtccaacgccatcctcgtcggccaggcgctctccttccgcgtcaccgccagcgac 625
|||||||||||| || |||||||||||||||||||||| ||||||||||||| |||||||
Sbjct: 874 tggcagtccaactccgtcctcgtcggccaggcgctctcgttccgcgtcaccggcagcgac 933
Query: 626 cgccgcacctccacctcctggaacgccgccccgagcacctggcagttcggccagaccttc 685
|||||||||||||| |||||||||||||| || | ||||| |||||||||||||||
Sbjct: 934 cgccgcacctccacatcctggaacgccgcacccgccggatggcacttcggccagaccttc 993
Query: 686 gagggcaagaacttcagggtctga 709
||||||||||||||| ||||||||
Sbjct: 994 gagggcaagaacttccgggtctga 1017
>dbj|AK119215.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-G10, full
insert sequence
Length = 1366
Score = 737 bits (372), Expect = 0.0
Identities = 607/684 (88%), Gaps = 1/684 (0%)
Strand = Plus / Plus
Query: 26 gcgcgcacgccacgttctacggcggcagcgacgcttttggctttatgggcggggcctgcg 85
|||||||||| ||||||||||| ||||||||||| | || ||||||||||| ||||
Sbjct: 158 gcgcgcacgcaacgttctacgggggcagcgacgcgtcagggacgatgggcggggcgtgcg 217
Query: 86 ggtacggcaacctgtgacagccaggggtacggcgtgaacaacgcggcgctgagcacggcg 145
||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 218 ggtacgggaacctgt-acagccaggggtacggggtgaacaacgcggcgctgagcacggcg 276
Query: 146 ctgttcgacgaggggctccgctgcggcgcgtgcttcgagatcaggtgcgaggagcagccc 205
|||||| || |||| |||||||||||||||||||||||| ||||| | | ||||||
Sbjct: 277 ctgttcaactccgggcagagctgcggcgcgtgcttcgagatcaagtgcgtgaaccagccc 336
Query: 206 gggtggcggtggtgccggccagggaggccctccatcctggtcacggccaccaacttctgc 265
|||||| |||||||| || ||||| ||||||||||| |||| |||||||||||||||
Sbjct: 337 gggtgggagtggtgccacccggggagcccctccatcctcatcaccgccaccaacttctgc 396
Query: 266 ccgcccaactacgcgctcccctccgacgacggcggctggtgcaacccgccccgcccgcac 325
|||||||||||||| |||||||||||| ||||||||||||||||||| || ||||| |||
Sbjct: 397 ccgcccaactacgccctcccctccgacaacggcggctggtgcaaccctcctcgcccccac 456
Query: 326 ttcgacctcgccatgcccatgttcctccacatcgccgagtaccgcgccggcatcgtgccc 385
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 457 ttcgacctcgccatgcccatgttcctccacatcgccgagtaccgcgccggcatcgtcccc 516
Query: 386 gtctcctaccgccgggtgccgtgccgcaagtccggcggggtgcggttcacaatcaacggc 445
|||||||||||||||||||||||| | ||| || ||||| |||||||| || |||||
Sbjct: 517 gtctcctaccgccgggtgccgtgcaggaagaagggaggggttcggttcacgataaacggg 576
Query: 446 ttccggtacttcaacctggtgctgatcacgaacgtggccggcgcgggggacgtggtgcgc 505
||| ||||||||||||||||||||||||||||||||||||| || |||||| | ||| |
Sbjct: 577 ttcaggtacttcaacctggtgctgatcacgaacgtggccggggccggggacatcgtgagg 636
Query: 506 gcgagcgtcaaggcggccagcaccgggtggctgcccatgtccaggaactggggccagaac 565
|||||||| |||| | | |||||||||||| |||||||||| |||||||||||||||||
Sbjct: 637 gcgagcgtgaaggggacgagcaccgggtggatgcccatgtcgcggaactggggccagaac 696
Query: 566 tggcagtccaacgccatcctcgtcggccaggcgctctccttccgcgtcaccgccagcgac 625
|||||||||||| || |||||||||||||||||||||| ||||||||||||| |||||||
Sbjct: 697 tggcagtccaactccgtcctcgtcggccaggcgctctcgttccgcgtcaccggcagcgac 756
Query: 626 cgccgcacctccacctcctggaacgccgccccgagcacctggcagttcggccagaccttc 685
|||||||||||||| |||||||||||||| || | ||||| |||||||||||||||
Sbjct: 757 cgccgcacctccacatcctggaacgccgcacccgccggatggcacttcggccagaccttc 816
Query: 686 gagggcaagaacttcagggtctga 709
||||||||||||||| ||||||||
Sbjct: 817 gagggcaagaacttccgggtctga 840
>ref|NM_185168.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1338
Score = 737 bits (372), Expect = 0.0
Identities = 607/684 (88%), Gaps = 1/684 (0%)
Strand = Plus / Plus
Query: 26 gcgcgcacgccacgttctacggcggcagcgacgcttttggctttatgggcggggcctgcg 85
|||||||||| ||||||||||| ||||||||||| | || ||||||||||| ||||
Sbjct: 139 gcgcgcacgcaacgttctacgggggcagcgacgcgtcagggacgatgggcggggcgtgcg 198
Query: 86 ggtacggcaacctgtgacagccaggggtacggcgtgaacaacgcggcgctgagcacggcg 145
||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 199 ggtacgggaacctgt-acagccaggggtacggggtgaacaacgcggcgctgagcacggcg 257
Query: 146 ctgttcgacgaggggctccgctgcggcgcgtgcttcgagatcaggtgcgaggagcagccc 205
|||||| || |||| |||||||||||||||||||||||| ||||| | | ||||||
Sbjct: 258 ctgttcaactccgggcagagctgcggcgcgtgcttcgagatcaagtgcgtgaaccagccc 317
Query: 206 gggtggcggtggtgccggccagggaggccctccatcctggtcacggccaccaacttctgc 265
|||||| |||||||| || ||||| ||||||||||| |||| |||||||||||||||
Sbjct: 318 gggtgggagtggtgccacccggggagcccctccatcctcatcaccgccaccaacttctgc 377
Query: 266 ccgcccaactacgcgctcccctccgacgacggcggctggtgcaacccgccccgcccgcac 325
|||||||||||||| |||||||||||| ||||||||||||||||||| || ||||| |||
Sbjct: 378 ccgcccaactacgccctcccctccgacaacggcggctggtgcaaccctcctcgcccccac 437
Query: 326 ttcgacctcgccatgcccatgttcctccacatcgccgagtaccgcgccggcatcgtgccc 385
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 438 ttcgacctcgccatgcccatgttcctccacatcgccgagtaccgcgccggcatcgtcccc 497
Query: 386 gtctcctaccgccgggtgccgtgccgcaagtccggcggggtgcggttcacaatcaacggc 445
|||||||||||||||||||||||| | ||| || ||||| |||||||| || |||||
Sbjct: 498 gtctcctaccgccgggtgccgtgcaggaagaagggaggggttcggttcacgataaacggg 557
Query: 446 ttccggtacttcaacctggtgctgatcacgaacgtggccggcgcgggggacgtggtgcgc 505
||| ||||||||||||||||||||||||||||||||||||| || |||||| | ||| |
Sbjct: 558 ttcaggtacttcaacctggtgctgatcacgaacgtggccggggccggggacatcgtgagg 617
Query: 506 gcgagcgtcaaggcggccagcaccgggtggctgcccatgtccaggaactggggccagaac 565
|||||||| |||| | | |||||||||||| |||||||||| |||||||||||||||||
Sbjct: 618 gcgagcgtgaaggggacgagcaccgggtggatgcccatgtcgcggaactggggccagaac 677
Query: 566 tggcagtccaacgccatcctcgtcggccaggcgctctccttccgcgtcaccgccagcgac 625
|||||||||||| || |||||||||||||||||||||| ||||||||||||| |||||||
Sbjct: 678 tggcagtccaactccgtcctcgtcggccaggcgctctcgttccgcgtcaccggcagcgac 737
Query: 626 cgccgcacctccacctcctggaacgccgccccgagcacctggcagttcggccagaccttc 685
|||||||||||||| |||||||||||||| || | ||||| |||||||||||||||
Sbjct: 738 cgccgcacctccacatcctggaacgccgcacccgccggatggcacttcggccagaccttc 797
Query: 686 gagggcaagaacttcagggtctga 709
||||||||||||||| ||||||||
Sbjct: 798 gagggcaagaacttccgggtctga 821
>gb|AC093018.4| Oryza sativa chromosome 3 BAC OSJNBb0081B07 genomic sequence, complete
sequence
Length = 143205
Score = 426 bits (215), Expect = e-116
Identities = 336/375 (89%), Gaps = 1/375 (0%)
Strand = Plus / Plus
Query: 26 gcgcgcacgccacgttctacggcggcagcgacgcttttggctttatgggcggggcctgcg 85
|||||||||| ||||||||||| ||||||||||| | || ||||||||||| ||||
Sbjct: 127938 gcgcgcacgcaacgttctacgggggcagcgacgcgtcagggacgatgggcggggcgtgcg 127997
Query: 86 ggtacggcaacctgtgacagccaggggtacggcgtgaacaacgcggcgctgagcacggcg 145
||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 127998 ggtacgggaacctgt-acagccaggggtacggggtgaacaacgcggcgctgagcacggcg 128056
Query: 146 ctgttcgacgaggggctccgctgcggcgcgtgcttcgagatcaggtgcgaggagcagccc 205
|||||| || |||| |||||||||||||||||||||||| ||||| | | ||||||
Sbjct: 128057 ctgttcaactccgggcagagctgcggcgcgtgcttcgagatcaagtgcgtgaaccagccc 128116
Query: 206 gggtggcggtggtgccggccagggaggccctccatcctggtcacggccaccaacttctgc 265
|||||| |||||||| || ||||| ||||||||||| |||| |||||||||||||||
Sbjct: 128117 gggtgggagtggtgccacccggggagcccctccatcctcatcaccgccaccaacttctgc 128176
Query: 266 ccgcccaactacgcgctcccctccgacgacggcggctggtgcaacccgccccgcccgcac 325
|||||||||||||| |||||||||||| ||||||||||||||||||| || ||||| |||
Sbjct: 128177 ccgcccaactacgccctcccctccgacaacggcggctggtgcaaccctcctcgcccccac 128236
Query: 326 ttcgacctcgccatgcccatgttcctccacatcgccgagtaccgcgccggcatcgtgccc 385
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 128237 ttcgacctcgccatgcccatgttcctccacatcgccgagtaccgcgccggcatcgtcccc 128296
Query: 386 gtctcctaccgccgg 400
|||||||||||||||
Sbjct: 128297 gtctcctaccgccgg 128311
Score = 317 bits (160), Expect = 7e-084
Identities = 256/288 (88%)
Strand = Plus / Plus
Query: 422 ggggtgcggttcacaatcaacggcttccggtacttcaacctggtgctgatcacgaacgtg 481
||||| |||||||| || ||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 129699 ggggttcggttcacgataaacgggttcaggtacttcaacctggtgctgatcacgaacgtg 129758
Query: 482 gccggcgcgggggacgtggtgcgcgcgagcgtcaaggcggccagcaccgggtggctgccc 541
||||| || |||||| | ||| | |||||||| |||| | | |||||||||||| |||||
Sbjct: 129759 gccggggccggggacatcgtgagggcgagcgtgaaggggacgagcaccgggtggatgccc 129818
Query: 542 atgtccaggaactggggccagaactggcagtccaacgccatcctcgtcggccaggcgctc 601
||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 129819 atgtcgcggaactggggccagaactggcagtccaactccgtcctcgtcggccaggcgctc 129878
Query: 602 tccttccgcgtcaccgccagcgaccgccgcacctccacctcctggaacgccgccccgagc 661
|| ||||||||||||| ||||||||||||||||||||| |||||||||||||| || |
Sbjct: 129879 tcgttccgcgtcaccggcagcgaccgccgcacctccacatcctggaacgccgcacccgcc 129938
Query: 662 acctggcagttcggccagaccttcgagggcaagaacttcagggtctga 709
||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct: 129939 ggatggcacttcggccagaccttcgagggcaagaacttccgggtctga 129986
>gb|AACV01008182.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg008182, whole
genome shotgun sequence
Length = 29478
Score = 426 bits (215), Expect = e-116
Identities = 336/375 (89%), Gaps = 1/375 (0%)
Strand = Plus / Plus
Query: 26 gcgcgcacgccacgttctacggcggcagcgacgcttttggctttatgggcggggcctgcg 85
|||||||||| ||||||||||| ||||||||||| | || ||||||||||| ||||
Sbjct: 18018 gcgcgcacgcaacgttctacgggggcagcgacgcgtcagggacgatgggcggggcgtgcg 18077
Query: 86 ggtacggcaacctgtgacagccaggggtacggcgtgaacaacgcggcgctgagcacggcg 145
||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 18078 ggtacgggaacctgt-acagccaggggtacggggtgaacaacgcggcgctgagcacggcg 18136
Query: 146 ctgttcgacgaggggctccgctgcggcgcgtgcttcgagatcaggtgcgaggagcagccc 205
|||||| || |||| |||||||||||||||||||||||| ||||| | | ||||||
Sbjct: 18137 ctgttcaactccgggcagagctgcggcgcgtgcttcgagatcaagtgcgtgaaccagccc 18196
Query: 206 gggtggcggtggtgccggccagggaggccctccatcctggtcacggccaccaacttctgc 265
|||||| |||||||| || ||||| ||||||||||| |||| |||||||||||||||
Sbjct: 18197 gggtgggagtggtgccacccggggagcccctccatcctcatcaccgccaccaacttctgc 18256
Query: 266 ccgcccaactacgcgctcccctccgacgacggcggctggtgcaacccgccccgcccgcac 325
|||||||||||||| |||||||||||| ||||||||||||||||||| || ||||| |||
Sbjct: 18257 ccgcccaactacgccctcccctccgacaacggcggctggtgcaaccctcctcgcccccac 18316
Query: 326 ttcgacctcgccatgcccatgttcctccacatcgccgagtaccgcgccggcatcgtgccc 385
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 18317 ttcgacctcgccatgcccatgttcctccacatcgccgagtaccgcgccggcatcgtcccc 18376
Query: 386 gtctcctaccgccgg 400
|||||||||||||||
Sbjct: 18377 gtctcctaccgccgg 18391
Score = 317 bits (160), Expect = 7e-084
Identities = 256/288 (88%)
Strand = Plus / Plus
Query: 422 ggggtgcggttcacaatcaacggcttccggtacttcaacctggtgctgatcacgaacgtg 481
||||| |||||||| || ||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 19779 ggggttcggttcacgataaacgggttcaggtacttcaacctggtgctgatcacgaacgtg 19838
Query: 482 gccggcgcgggggacgtggtgcgcgcgagcgtcaaggcggccagcaccgggtggctgccc 541
||||| || |||||| | ||| | |||||||| |||| | | |||||||||||| |||||
Sbjct: 19839 gccggggccggggacatcgtgagggcgagcgtgaaggggacgagcaccgggtggatgccc 19898
Query: 542 atgtccaggaactggggccagaactggcagtccaacgccatcctcgtcggccaggcgctc 601
||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 19899 atgtcgcggaactggggccagaactggcagtccaactccgtcctcgtcggccaggcgctc 19958
Query: 602 tccttccgcgtcaccgccagcgaccgccgcacctccacctcctggaacgccgccccgagc 661
|| ||||||||||||| ||||||||||||||||||||| |||||||||||||| || |
Sbjct: 19959 tcgttccgcgtcaccggcagcgaccgccgcacctccacatcctggaacgccgcacccgcc 20018
Query: 662 acctggcagttcggccagaccttcgagggcaagaacttcagggtctga 709
||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct: 20019 ggatggcacttcggccagaccttcgagggcaagaacttccgggtctga 20066
>ref|NT_107188.1| Oryza sativa (japonica cultivar-group)
Length = 1363716
Score = 426 bits (215), Expect = e-116
Identities = 336/375 (89%), Gaps = 1/375 (0%)
Strand = Plus / Minus
Query: 26 gcgcgcacgccacgttctacggcggcagcgacgcttttggctttatgggcggggcctgcg 85
|||||||||| ||||||||||| ||||||||||| | || ||||||||||| ||||
Sbjct: 864257 gcgcgcacgcaacgttctacgggggcagcgacgcgtcagggacgatgggcggggcgtgcg 864198
Query: 86 ggtacggcaacctgtgacagccaggggtacggcgtgaacaacgcggcgctgagcacggcg 145
||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 864197 ggtacgggaacctgt-acagccaggggtacggggtgaacaacgcggcgctgagcacggcg 864139
Query: 146 ctgttcgacgaggggctccgctgcggcgcgtgcttcgagatcaggtgcgaggagcagccc 205
|||||| || |||| |||||||||||||||||||||||| ||||| | | ||||||
Sbjct: 864138 ctgttcaactccgggcagagctgcggcgcgtgcttcgagatcaagtgcgtgaaccagccc 864079
Query: 206 gggtggcggtggtgccggccagggaggccctccatcctggtcacggccaccaacttctgc 265
|||||| |||||||| || ||||| ||||||||||| |||| |||||||||||||||
Sbjct: 864078 gggtgggagtggtgccacccggggagcccctccatcctcatcaccgccaccaacttctgc 864019
Query: 266 ccgcccaactacgcgctcccctccgacgacggcggctggtgcaacccgccccgcccgcac 325
|||||||||||||| |||||||||||| ||||||||||||||||||| || ||||| |||
Sbjct: 864018 ccgcccaactacgccctcccctccgacaacggcggctggtgcaaccctcctcgcccccac 863959
Query: 326 ttcgacctcgccatgcccatgttcctccacatcgccgagtaccgcgccggcatcgtgccc 385
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 863958 ttcgacctcgccatgcccatgttcctccacatcgccgagtaccgcgccggcatcgtcccc 863899
Query: 386 gtctcctaccgccgg 400
|||||||||||||||
Sbjct: 863898 gtctcctaccgccgg 863884
Score = 317 bits (160), Expect = 7e-084
Identities = 256/288 (88%)
Strand = Plus / Minus
Query: 422 ggggtgcggttcacaatcaacggcttccggtacttcaacctggtgctgatcacgaacgtg 481
||||| |||||||| || ||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 862496 ggggttcggttcacgataaacgggttcaggtacttcaacctggtgctgatcacgaacgtg 862437
Query: 482 gccggcgcgggggacgtggtgcgcgcgagcgtcaaggcggccagcaccgggtggctgccc 541
||||| || |||||| | ||| | |||||||| |||| | | |||||||||||| |||||
Sbjct: 862436 gccggggccggggacatcgtgagggcgagcgtgaaggggacgagcaccgggtggatgccc 862377
Query: 542 atgtccaggaactggggccagaactggcagtccaacgccatcctcgtcggccaggcgctc 601
||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 862376 atgtcgcggaactggggccagaactggcagtccaactccgtcctcgtcggccaggcgctc 862317
Query: 602 tccttccgcgtcaccgccagcgaccgccgcacctccacctcctggaacgccgccccgagc 661
|| ||||||||||||| ||||||||||||||||||||| |||||||||||||| || |
Sbjct: 862316 tcgttccgcgtcaccggcagcgaccgccgcacctccacatcctggaacgccgcacccgcc 862257
Query: 662 acctggcagttcggccagaccttcgagggcaagaacttcagggtctga 709
||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct: 862256 ggatggcacttcggccagaccttcgagggcaagaacttccgggtctga 862209
>gb|CH401176.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000013 genomic
scaffold, whole genome shotgun sequence
Length = 9810738
Score = 426 bits (215), Expect = e-116
Identities = 336/375 (89%), Gaps = 1/375 (0%)
Strand = Plus / Minus
Query: 26 gcgcgcacgccacgttctacggcggcagcgacgcttttggctttatgggcggggcctgcg 85
|||||||||| ||||||||||| ||||||||||| | || ||||||||||| ||||
Sbjct: 7892883 gcgcgcacgcaacgttctacgggggcagcgacgcgtcagggacgatgggcggggcgtgcg 7892824
Query: 86 ggtacggcaacctgtgacagccaggggtacggcgtgaacaacgcggcgctgagcacggcg 145
||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 7892823 ggtacgggaacctgt-acagccaggggtacggggtgaacaacgcggcgctgagcacggcg 7892765
Query: 146 ctgttcgacgaggggctccgctgcggcgcgtgcttcgagatcaggtgcgaggagcagccc 205
|||||| || |||| |||||||||||||||||||||||| ||||| | | ||||||
Sbjct: 7892764 ctgttcaactccgggcagagctgcggcgcgtgcttcgagatcaagtgcgtgaaccagccc 7892705
Query: 206 gggtggcggtggtgccggccagggaggccctccatcctggtcacggccaccaacttctgc 265
|||||| |||||||| || ||||| ||||||||||| |||| |||||||||||||||
Sbjct: 7892704 gggtgggagtggtgccacccggggagcccctccatcctcatcaccgccaccaacttctgc 7892645
Query: 266 ccgcccaactacgcgctcccctccgacgacggcggctggtgcaacccgccccgcccgcac 325
|||||||||||||| |||||||||||| ||||||||||||||||||| || ||||| |||
Sbjct: 7892644 ccgcccaactacgccctcccctccgacaacggcggctggtgcaaccctcctcgcccccac 7892585
Query: 326 ttcgacctcgccatgcccatgttcctccacatcgccgagtaccgcgccggcatcgtgccc 385
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 7892584 ttcgacctcgccatgcccatgttcctccacatcgccgagtaccgcgccggcatcgtcccc 7892525
Query: 386 gtctcctaccgccgg 400
|||||||||||||||
Sbjct: 7892524 gtctcctaccgccgg 7892510
Score = 317 bits (160), Expect = 7e-084
Identities = 256/288 (88%)
Strand = Plus / Minus
Query: 422 ggggtgcggttcacaatcaacggcttccggtacttcaacctggtgctgatcacgaacgtg 481
||||| |||||||| || ||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 7891122 ggggttcggttcacgataaacgggttcaggtacttcaacctggtgctgatcacgaacgtg 7891063
Query: 482 gccggcgcgggggacgtggtgcgcgcgagcgtcaaggcggccagcaccgggtggctgccc 541
||||| || |||||| | ||| | |||||||| |||| | | |||||||||||| |||||
Sbjct: 7891062 gccggggccggggacatcgtgagggcgagcgtgaaggggacgagcaccgggtggatgccc 7891003
Query: 542 atgtccaggaactggggccagaactggcagtccaacgccatcctcgtcggccaggcgctc 601
||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 7891002 atgtcgcggaactggggccagaactggcagtccaactccgtcctcgtcggccaggcgctc 7890943
Query: 602 tccttccgcgtcaccgccagcgaccgccgcacctccacctcctggaacgccgccccgagc 661
|| ||||||||||||| ||||||||||||||||||||| |||||||||||||| || |
Sbjct: 7890942 tcgttccgcgtcaccggcagcgaccgccgcacctccacatcctggaacgccgcacccgcc 7890883
Query: 662 acctggcagttcggccagaccttcgagggcaagaacttcagggtctga 709
||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct: 7890882 ggatggcacttcggccagaccttcgagggcaagaacttccgggtctga 7890835
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 426 bits (215), Expect = e-116
Identities = 336/375 (89%), Gaps = 1/375 (0%)
Strand = Plus / Minus
Query: 26 gcgcgcacgccacgttctacggcggcagcgacgcttttggctttatgggcggggcctgcg 85
|||||||||| ||||||||||| ||||||||||| | || ||||||||||| ||||
Sbjct: 35159046 gcgcgcacgcaacgttctacgggggcagcgacgcgtcagggacgatgggcggggcgtgcg 35158987
Query: 86 ggtacggcaacctgtgacagccaggggtacggcgtgaacaacgcggcgctgagcacggcg 145
||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 35158986 ggtacgggaacctgt-acagccaggggtacggggtgaacaacgcggcgctgagcacggcg 35158928
Query: 146 ctgttcgacgaggggctccgctgcggcgcgtgcttcgagatcaggtgcgaggagcagccc 205
|||||| || |||| |||||||||||||||||||||||| ||||| | | ||||||
Sbjct: 35158927 ctgttcaactccgggcagagctgcggcgcgtgcttcgagatcaagtgcgtgaaccagccc 35158868
Query: 206 gggtggcggtggtgccggccagggaggccctccatcctggtcacggccaccaacttctgc 265
|||||| |||||||| || ||||| ||||||||||| |||| |||||||||||||||
Sbjct: 35158867 gggtgggagtggtgccacccggggagcccctccatcctcatcaccgccaccaacttctgc 35158808
Query: 266 ccgcccaactacgcgctcccctccgacgacggcggctggtgcaacccgccccgcccgcac 325
|||||||||||||| |||||||||||| ||||||||||||||||||| || ||||| |||
Sbjct: 35158807 ccgcccaactacgccctcccctccgacaacggcggctggtgcaaccctcctcgcccccac 35158748
Query: 326 ttcgacctcgccatgcccatgttcctccacatcgccgagtaccgcgccggcatcgtgccc 385
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 35158747 ttcgacctcgccatgcccatgttcctccacatcgccgagtaccgcgccggcatcgtcccc 35158688
Query: 386 gtctcctaccgccgg 400
|||||||||||||||
Sbjct: 35158687 gtctcctaccgccgg 35158673
Score = 317 bits (160), Expect = 7e-084
Identities = 256/288 (88%)
Strand = Plus / Minus
Query: 422 ggggtgcggttcacaatcaacggcttccggtacttcaacctggtgctgatcacgaacgtg 481
||||| |||||||| || ||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 35157285 ggggttcggttcacgataaacgggttcaggtacttcaacctggtgctgatcacgaacgtg 35157226
Query: 482 gccggcgcgggggacgtggtgcgcgcgagcgtcaaggcggccagcaccgggtggctgccc 541
||||| || |||||| | ||| | |||||||| |||| | | |||||||||||| |||||
Sbjct: 35157225 gccggggccggggacatcgtgagggcgagcgtgaaggggacgagcaccgggtggatgccc 35157166
Query: 542 atgtccaggaactggggccagaactggcagtccaacgccatcctcgtcggccaggcgctc 601
||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 35157165 atgtcgcggaactggggccagaactggcagtccaactccgtcctcgtcggccaggcgctc 35157106
Query: 602 tccttccgcgtcaccgccagcgaccgccgcacctccacctcctggaacgccgccccgagc 661
|| ||||||||||||| ||||||||||||||||||||| |||||||||||||| || |
Sbjct: 35157105 tcgttccgcgtcaccggcagcgaccgccgcacctccacatcctggaacgccgcacccgcc 35157046
Query: 662 acctggcagttcggccagaccttcgagggcaagaacttcagggtctga 709
||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct: 35157045 ggatggcacttcggccagaccttcgagggcaagaacttccgggtctga 35156998
Score = 93.7 bits (47), Expect = 2e-016
Identities = 78/87 (89%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 70 atgggcggggcctgcgggtacggcaacctgtgacagccaggggtacggcgtgaacaacgc 129
|||||||| || ||||||||||||||||||| || |||||||||||||||| |||||||
Sbjct: 18551677 atgggcggcgcgtgcgggtacggcaacctgt-acgaccaggggtacggcgtggacaacgc 18551735
Query: 130 ggcgctgagcacggcgctgttcgacga 156
|||||||||| |||||||||| ||||
Sbjct: 18551736 ggcgctgagccaggcgctgttcaacga 18551762
Score = 91.7 bits (46), Expect = 7e-016
Identities = 76/86 (88%)
Strand = Plus / Plus
Query: 246 tcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggctggt 305
||||||| |||||| |||||||||| ||||||||||||||| ||||| |||||| ||||
Sbjct: 37505488 tcacggcgaccaacctctgcccgccgaactacgcgctccccaacgacgccggcgggtggt 37505547
Query: 306 gcaacccgccccgcccgcacttcgac 331
|||||||||| || | ||||||||||
Sbjct: 37505548 gcaacccgccgcggcagcacttcgac 37505573
Score = 89.7 bits (45), Expect = 3e-015
Identities = 135/165 (81%)
Strand = Plus / Plus
Query: 236 tccatcctggtcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgac 295
|||||| |||| ||||||||| || | |||||| ||||| ||||||||||| |||| |
Sbjct: 15400304 tccatcgtggtgacggccaccgacctgtgcccggccaaccacgcgctccccggcgaccgc 15400363
Query: 296 ggcggctggtgcaacccgccccgcccgcacttcgacctcgccatgcccatgttcctccac 355
|||||||||||||||||||| | || |||||||||||| || |||| ||||||| |
Sbjct: 15400364 ggcggctggtgcaacccgccgctccaccacttcgacctctcccagcccgccttcctccgc 15400423
Query: 356 atcgccgagtaccgcgccggcatcgtgcccgtctcctaccgccgg 400
|||||| | || |||||||||| ||||||||||||||||||
Sbjct: 15400424 atcgcccgcttccagtccggcatcgtccccgtctcctaccgccgg 15400468
Score = 83.8 bits (42), Expect = 2e-013
Identities = 69/78 (88%)
Strand = Plus / Minus
Query: 254 accaacttctgcccgcccaactacgcgctcccctccgacgacggcggctggtgcaacccg 313
|||||| | ||||||||||||||||| ||| || | |||||||||||||||||||||||
Sbjct: 3192780 accaacctgtgcccgcccaactacgccctctccagcaacgacggcggctggtgcaacccg 3192721
Query: 314 ccccgcccgcacttcgac 331
|| ||| |||||||||||
Sbjct: 3192720 cctcgcacgcacttcgac 3192703
Score = 83.8 bits (42), Expect = 2e-013
Identities = 75/86 (87%)
Strand = Plus / Minus
Query: 246 tcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggctggt 305
|||||||||||||| | ||||||||||||| || |||||| | || |||||||||||
Sbjct: 3190019 tcacggccaccaacctgtgcccgcccaactgggctctccccagcaacagcggcggctggt 3189960
Query: 306 gcaacccgccccgcccgcacttcgac 331
|||||||||||||||| |||||||||
Sbjct: 3189959 gcaacccgccccgccctcacttcgac 3189934
Score = 81.8 bits (41), Expect = 7e-013
Identities = 71/81 (87%)
Strand = Plus / Minus
Query: 551 aactggggccagaactggcagtccaacgccatcctcgtcggccaggcgctctccttccgc 610
|||||||| |||||||||||| |||||| ||||| |||| |||||||||||||||||
Sbjct: 12771581 aactgggggcagaactggcagagcaacgcgtacctcgacggcaaggcgctctccttccgc 12771522
Query: 611 gtcaccgccagcgaccgccgc 631
||||||||| ||||| |||||
Sbjct: 12771521 gtcaccgccggcgacggccgc 12771501
Score = 69.9 bits (35), Expect = 3e-009
Identities = 66/75 (88%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 82 tgcgggtacggcaacctgtgacagccaggggtacggcgtgaacaacgcggcgctgagcac 141
||||||||||| ||||||| || ||||||||||||| | |||||||| |||||||||||
Sbjct: 3214611 tgcgggtacgggaacctgt-acgaccaggggtacggcatcaacaacgcagcgctgagcac 3214669
Query: 142 ggcgctgttcgacga 156
| |||||||| ||||
Sbjct: 3214670 gccgctgttcaacga 3214684
Score = 67.9 bits (34), Expect = 1e-008
Identities = 77/90 (85%), Gaps = 1/90 (1%)
Strand = Plus / Minus
Query: 248 acggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggctggtgc 307
||||| |||||||| ||||| || |||||||||||||| ||||| |||||||||| ||
Sbjct: 12771901 acggcgaccaacttttgccccccgaactacgcgctcccgagcgacggcggcggctgg-gc 12771843
Query: 308 aacccgccccgcccgcacttcgacctcgcc 337
||||| || || | ||||||||||||||||
Sbjct: 12771842 aacccaccgcggcggcacttcgacctcgcc 12771813
Score = 67.9 bits (34), Expect = 1e-008
Identities = 61/70 (87%)
Strand = Plus / Minus
Query: 547 caggaactggggccagaactggcagtccaacgccatcctcgtcggccaggcgctctcctt 606
||||||||||||| |||||||||||| ||||| ||||||||||||| ||||| ||||
Sbjct: 3192351 caggaactggggcgcgaactggcagtcgcacgccggcctcgtcggccagacgctcacctt 3192292
Query: 607 ccgcgtcacc 616
| ||||||||
Sbjct: 3192291 cggcgtcacc 3192282
Score = 65.9 bits (33), Expect = 4e-008
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 527 accgggtggctgcccatgtccaggaactggggccagaactggcagtccaacgccatcctc 586
||||||||| || ||||||||||||| |||||| |||||||||||||||||| ||||
Sbjct: 37505769 accgggtggatggccatgtccaggaattggggcgtcaactggcagtccaacgcctacctc 37505828
Query: 587 gtcggccag 595
| |||||||
Sbjct: 37505829 gacggccag 37505837
Score = 65.9 bits (33), Expect = 4e-008
Identities = 71/84 (84%), Gaps = 6/84 (7%)
Strand = Plus / Plus
Query: 248 acggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggctggtgc 307
|||| |||||||||||||||||||||||| | ||||||| ||||||||||||||
Sbjct: 3209530 acgggcaccaacttctgcccgcccaactatgacctcccct------acggcggctggtgc 3209583
Query: 308 aacccgccccgcccgcacttcgac 331
||| || ||||||| |||||||||
Sbjct: 3209584 aacacgacccgccctcacttcgac 3209607
Score = 65.9 bits (33), Expect = 4e-008
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 291 acgacggcggctggtgcaacccgccccgcccgcacttcgac 331
||||||||||||||||||||||||| |||| ||||||||||
Sbjct: 3185187 acgacggcggctggtgcaacccgccgcgccagcacttcgac 3185227
Score = 61.9 bits (31), Expect = 6e-007
Identities = 65/75 (86%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 82 tgcgggtacggcaacctgtgacagccaggggtacggcgtgaacaacgcggcgctgagcac 141
||||||||||||||||||| || |||| | |||||| | |||||||| |||||||||||
Sbjct: 3224488 tgcgggtacggcaacctgt-acgaccagcgctacggcatcaacaacgcagcgctgagcac 3224546
Query: 142 ggcgctgttcgacga 156
| |||||||| ||||
Sbjct: 3224547 gccgctgttcaacga 3224561
Score = 60.0 bits (30), Expect = 3e-006
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 102 acagccaggggtacggcgtgaacaacgcggcgctgagcacggcgctgttc 151
||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct: 12772045 acagccaggggtacggcacgagcacggcggcgctgagcacggcgctgttc 12771996
Score = 58.0 bits (29), Expect = 1e-005
Identities = 72/85 (84%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 248 acggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggctggtgc 307
||||| |||||| | ||||||||||||| |||||||| ||||| |||||| ||||||
Sbjct: 18551852 acggcgaccaacctgtgcccgcccaactgggcgctcccgagcgacggcggcgggtggtgc 18551911
Query: 308 -aacccgccccgcccgcacttcgac 331
|||||||| || ||||||||||||
Sbjct: 18551912 aaacccgccgcggccgcacttcgac 18551936
Score = 58.0 bits (29), Expect = 1e-005
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 664 ctggcagttcggccagaccttcgagggca 692
|||||||||||||||||||||||||||||
Sbjct: 12771468 ctggcagttcggccagaccttcgagggca 12771440
Score = 52.0 bits (26), Expect = 6e-004
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 106 ccaggggtacggcgtgaacaacgcggcgctgagcacggcgctgttc 151
|||||| |||||| | ||||||||||||||||||||| | ||||||
Sbjct: 3209391 ccagggctacggcatcaacaacgcggcgctgagcacgccactgttc 3209436
Score = 52.0 bits (26), Expect = 6e-004
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 34 gccacgttctacggcggcagcgacgc 59
||||||||||||||||||||||||||
Sbjct: 3193085 gccacgttctacggcggcagcgacgc 3193060
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 531 ggtggctgcccatgtccaggaactggggccagaactggcag 571
|||||| | ||||| | ||||||||||||||||||||||||
Sbjct: 15400977 ggtggcaggccatggcgaggaactggggccagaactggcag 15401017
Score = 50.1 bits (25), Expect = 0.002
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 31 cacgccacgttctacggcggcagcgacgc 59
||||||||||||||||||||| |||||||
Sbjct: 12772232 cacgccacgttctacggcggcggcgacgc 12772204
Score = 48.1 bits (24), Expect = 0.010
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 584 ctcgtcggccaggcgctctccttc 607
||||||||||||||||||||||||
Sbjct: 3189447 ctcgtcggccaggcgctctccttc 3189424
Score = 46.1 bits (23), Expect = 0.038
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 452 tacttcaacctggtgctgatcacgaacgtggccgg 486
|||||| | |||||||||||| |||||||||||||
Sbjct: 3192446 tacttcgagctggtgctgatctcgaacgtggccgg 3192412
Score = 44.1 bits (22), Expect = 0.15
Identities = 64/78 (82%)
Strand = Plus / Plus
Query: 107 caggggtacggcgtgaacaacgcggcgctgagcacggcgctgttcgacgaggggctccgc 166
|||||||||||| | ||| |||||||||||| ||| | |||||| || ||||| ||
Sbjct: 15400163 caggggtacggcacggacacggcggcgctgagcgcggtgatgttcggggacgggctgagc 15400222
Query: 167 tgcggcgcgtgcttcgag 184
|||||||| |||||||||
Sbjct: 15400223 tgcggcgcctgcttcgag 15400240
Score = 44.1 bits (22), Expect = 0.15
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 294 acggcggctggtgcaacccgccccgcccgcacttcgac 331
||||||||||||||||| || ||||||| ||||||||
Sbjct: 3224663 acggcggctggtgcaacgcgacccgcccttacttcgac 3224700
Score = 44.1 bits (22), Expect = 0.15
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 294 acggcggctggtgcaacccgccccgcccgcacttcgac 331
||||||||||||||||| | ||||||| |||||||||
Sbjct: 3214813 acggcggctggtgcaacgctacccgccctcacttcgac 3214850
Score = 44.1 bits (22), Expect = 0.15
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 34 gccacgttctacggcggcagcgacgc 59
||||||||||||||||| ||||||||
Sbjct: 3184846 gccacgttctacggcgggagcgacgc 3184871
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 426 bits (215), Expect = e-116
Identities = 336/375 (89%), Gaps = 1/375 (0%)
Strand = Plus / Minus
Query: 26 gcgcgcacgccacgttctacggcggcagcgacgcttttggctttatgggcggggcctgcg 85
|||||||||| ||||||||||| ||||||||||| | || ||||||||||| ||||
Sbjct: 34297532 gcgcgcacgcaacgttctacgggggcagcgacgcgtcagggacgatgggcggggcgtgcg 34297473
Query: 86 ggtacggcaacctgtgacagccaggggtacggcgtgaacaacgcggcgctgagcacggcg 145
||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 34297472 ggtacgggaacctgt-acagccaggggtacggggtgaacaacgcggcgctgagcacggcg 34297414
Query: 146 ctgttcgacgaggggctccgctgcggcgcgtgcttcgagatcaggtgcgaggagcagccc 205
|||||| || |||| |||||||||||||||||||||||| ||||| | | ||||||
Sbjct: 34297413 ctgttcaactccgggcagagctgcggcgcgtgcttcgagatcaagtgcgtgaaccagccc 34297354
Query: 206 gggtggcggtggtgccggccagggaggccctccatcctggtcacggccaccaacttctgc 265
|||||| |||||||| || ||||| ||||||||||| |||| |||||||||||||||
Sbjct: 34297353 gggtgggagtggtgccacccggggagcccctccatcctcatcaccgccaccaacttctgc 34297294
Query: 266 ccgcccaactacgcgctcccctccgacgacggcggctggtgcaacccgccccgcccgcac 325
|||||||||||||| |||||||||||| ||||||||||||||||||| || ||||| |||
Sbjct: 34297293 ccgcccaactacgccctcccctccgacaacggcggctggtgcaaccctcctcgcccccac 34297234
Query: 326 ttcgacctcgccatgcccatgttcctccacatcgccgagtaccgcgccggcatcgtgccc 385
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 34297233 ttcgacctcgccatgcccatgttcctccacatcgccgagtaccgcgccggcatcgtcccc 34297174
Query: 386 gtctcctaccgccgg 400
|||||||||||||||
Sbjct: 34297173 gtctcctaccgccgg 34297159
Score = 317 bits (160), Expect = 7e-084
Identities = 256/288 (88%)
Strand = Plus / Minus
Query: 422 ggggtgcggttcacaatcaacggcttccggtacttcaacctggtgctgatcacgaacgtg 481
||||| |||||||| || ||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 34295771 ggggttcggttcacgataaacgggttcaggtacttcaacctggtgctgatcacgaacgtg 34295712
Query: 482 gccggcgcgggggacgtggtgcgcgcgagcgtcaaggcggccagcaccgggtggctgccc 541
||||| || |||||| | ||| | |||||||| |||| | | |||||||||||| |||||
Sbjct: 34295711 gccggggccggggacatcgtgagggcgagcgtgaaggggacgagcaccgggtggatgccc 34295652
Query: 542 atgtccaggaactggggccagaactggcagtccaacgccatcctcgtcggccaggcgctc 601
||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 34295651 atgtcgcggaactggggccagaactggcagtccaactccgtcctcgtcggccaggcgctc 34295592
Query: 602 tccttccgcgtcaccgccagcgaccgccgcacctccacctcctggaacgccgccccgagc 661
|| ||||||||||||| ||||||||||||||||||||| |||||||||||||| || |
Sbjct: 34295591 tcgttccgcgtcaccggcagcgaccgccgcacctccacatcctggaacgccgcacccgcc 34295532
Query: 662 acctggcagttcggccagaccttcgagggcaagaacttcagggtctga 709
||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct: 34295531 ggatggcacttcggccagaccttcgagggcaagaacttccgggtctga 34295484
Score = 93.7 bits (47), Expect = 2e-016
Identities = 78/87 (89%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 70 atgggcggggcctgcgggtacggcaacctgtgacagccaggggtacggcgtgaacaacgc 129
|||||||| || ||||||||||||||||||| || |||||||||||||||| |||||||
Sbjct: 17740769 atgggcggcgcgtgcgggtacggcaacctgt-acgaccaggggtacggcgtggacaacgc 17740827
Query: 130 ggcgctgagcacggcgctgttcgacga 156
|||||||||| |||||||||| ||||
Sbjct: 17740828 ggcgctgagccaggcgctgttcaacga 17740854
Score = 91.7 bits (46), Expect = 7e-016
Identities = 79/90 (87%)
Strand = Plus / Minus
Query: 248 acggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggctggtgc 307
||||| |||||||||||||| || |||||||||||||| ||||| |||||||||||||
Sbjct: 12441390 acggcgaccaacttctgccccccgaactacgcgctcccgagcgacggcggcggctggtgc 12441331
Query: 308 aacccgccccgcccgcacttcgacctcgcc 337
||||| || || | ||||||||||||||||
Sbjct: 12441330 aacccaccgcggcggcacttcgacctcgcc 12441301
Score = 89.7 bits (45), Expect = 3e-015
Identities = 135/165 (81%)
Strand = Plus / Plus
Query: 236 tccatcctggtcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgac 295
|||||| |||| ||||||||| || | |||||| ||||| ||||||||||| |||| |
Sbjct: 14727915 tccatcgtggtgacggccaccgacctgtgcccggccaaccacgcgctccccggcgaccgc 14727974
Query: 296 ggcggctggtgcaacccgccccgcccgcacttcgacctcgccatgcccatgttcctccac 355
|||||||||||||||||||| | || |||||||||||| || |||| ||||||| |
Sbjct: 14727975 ggcggctggtgcaacccgccgctccaccacttcgacctctcccagcccgccttcctccgc 14728034
Query: 356 atcgccgagtaccgcgccggcatcgtgcccgtctcctaccgccgg 400
|||||| | || |||||||||| ||||||||||||||||||
Sbjct: 14728035 atcgcccgcttccagtccggcatcgtccccgtctcctaccgccgg 14728079
Score = 83.8 bits (42), Expect = 2e-013
Identities = 69/78 (88%)
Strand = Plus / Minus
Query: 254 accaacttctgcccgcccaactacgcgctcccctccgacgacggcggctggtgcaacccg 313
|||||| | ||||||||||||||||| ||| || | |||||||||||||||||||||||
Sbjct: 2988711 accaacctgtgcccgcccaactacgccctctccagcaacgacggcggctggtgcaacccg 2988652
Query: 314 ccccgcccgcacttcgac 331
|| ||| |||||||||||
Sbjct: 2988651 cctcgcacgcacttcgac 2988634
Score = 83.8 bits (42), Expect = 2e-013
Identities = 75/86 (87%)
Strand = Plus / Minus
Query: 246 tcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggctggt 305
|||||||||||||| | ||||||||||||| || |||||| | || |||||||||||
Sbjct: 2985950 tcacggccaccaacctgtgcccgcccaactgggctctccccagcaacagcggcggctggt 2985891
Query: 306 gcaacccgccccgcccgcacttcgac 331
|||||||||||||||| |||||||||
Sbjct: 2985890 gcaacccgccccgccctcacttcgac 2985865
Score = 81.8 bits (41), Expect = 7e-013
Identities = 71/81 (87%)
Strand = Plus / Minus
Query: 551 aactggggccagaactggcagtccaacgccatcctcgtcggccaggcgctctccttccgc 610
|||||||| |||||||||||| |||||| ||||| |||| |||||||||||||||||
Sbjct: 12441069 aactgggggcagaactggcagagcaacgcgtacctcgacggcaaggcgctctccttccgc 12441010
Query: 611 gtcaccgccagcgaccgccgc 631
||||||||| ||||| |||||
Sbjct: 12441009 gtcaccgccggcgacggccgc 12440989
Score = 75.8 bits (38), Expect = 4e-011
Identities = 63/70 (90%), Gaps = 1/70 (1%)
Strand = Plus / Minus
Query: 82 tgcgggtacggcaacctgtgacagccaggggtacggcgtgaacaacgcggcgctgagcac 141
||||||||||| ||||||| ||||||||||||||||| || || ||||||||||||||
Sbjct: 12441552 tgcgggtacgggaacctgt-acagccaggggtacggcacgagcacggcggcgctgagcac 12441494
Query: 142 ggcgctgttc 151
||||||||||
Sbjct: 12441493 ggcgctgttc 12441484
Score = 71.9 bits (36), Expect = 7e-010
Identities = 72/84 (85%)
Strand = Plus / Plus
Query: 248 acggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggctggtgc 307
||||| |||||| | ||||||||||||| |||||||| ||||| |||||| ||||||
Sbjct: 17740943 acggcgaccaacctgtgcccgcccaactgggcgctcccgagcgacggcggcgggtggtgc 17741002
Query: 308 aacccgccccgcccgcacttcgac 331
|||||||| || ||||||||||||
Sbjct: 17741003 aacccgccgcggccgcacttcgac 17741026
Score = 69.9 bits (35), Expect = 3e-009
Identities = 66/75 (88%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 82 tgcgggtacggcaacctgtgacagccaggggtacggcgtgaacaacgcggcgctgagcac 141
||||||||||| ||||||| || ||||||||||||| | |||||||| |||||||||||
Sbjct: 3008569 tgcgggtacgggaacctgt-acgaccaggggtacggcatcaacaacgcagcgctgagcac 3008627
Query: 142 ggcgctgttcgacga 156
| |||||||| ||||
Sbjct: 3008628 gccgctgttcaacga 3008642
Score = 67.9 bits (34), Expect = 1e-008
Identities = 61/70 (87%)
Strand = Plus / Minus
Query: 547 caggaactggggccagaactggcagtccaacgccatcctcgtcggccaggcgctctcctt 606
||||||||||||| |||||||||||| ||||| ||||||||||||| ||||| ||||
Sbjct: 2988282 caggaactggggcgcgaactggcagtcgcacgccggcctcgtcggccagacgctcacctt 2988223
Query: 607 ccgcgtcacc 616
| ||||||||
Sbjct: 2988222 cggcgtcacc 2988213
Score = 65.9 bits (33), Expect = 4e-008
Identities = 71/84 (84%), Gaps = 6/84 (7%)
Strand = Plus / Plus
Query: 248 acggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggctggtgc 307
|||| |||||||||||||||||||||||| | ||||||| ||||||||||||||
Sbjct: 3003521 acgggcaccaacttctgcccgcccaactatgacctcccct------acggcggctggtgc 3003574
Query: 308 aacccgccccgcccgcacttcgac 331
||| || ||||||| |||||||||
Sbjct: 3003575 aacacgacccgccctcacttcgac 3003598
Score = 65.9 bits (33), Expect = 4e-008
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 291 acgacggcggctggtgcaacccgccccgcccgcacttcgac 331
||||||||||||||||||||||||| |||| ||||||||||
Sbjct: 2981118 acgacggcggctggtgcaacccgccgcgccagcacttcgac 2981158
Score = 61.9 bits (31), Expect = 6e-007
Identities = 65/75 (86%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 82 tgcgggtacggcaacctgtgacagccaggggtacggcgtgaacaacgcggcgctgagcac 141
||||||||||||||||||| || |||| | |||||| | |||||||| |||||||||||
Sbjct: 3018977 tgcgggtacggcaacctgt-acgaccagcgctacggcatcaacaacgcagcgctgagcac 3019035
Query: 142 ggcgctgttcgacga 156
| |||||||| ||||
Sbjct: 3019036 gccgctgttcaacga 3019050
Score = 58.0 bits (29), Expect = 1e-005
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 664 ctggcagttcggccagaccttcgagggca 692
|||||||||||||||||||||||||||||
Sbjct: 12440956 ctggcagttcggccagaccttcgagggca 12440928
Score = 52.0 bits (26), Expect = 6e-004
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 106 ccaggggtacggcgtgaacaacgcggcgctgagcacggcgctgttc 151
|||||| |||||| | ||||||||||||||||||||| | ||||||
Sbjct: 3003382 ccagggctacggcatcaacaacgcggcgctgagcacgccactgttc 3003427
Score = 52.0 bits (26), Expect = 6e-004
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 34 gccacgttctacggcggcagcgacgc 59
||||||||||||||||||||||||||
Sbjct: 2989016 gccacgttctacggcggcagcgacgc 2988991
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 531 ggtggctgcccatgtccaggaactggggccagaactggcag 571
|||||| | ||||| | ||||||||||||||||||||||||
Sbjct: 14728588 ggtggcaggccatggcgaggaactggggccagaactggcag 14728628
Score = 50.1 bits (25), Expect = 0.002
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 31 cacgccacgttctacggcggcagcgacgc 59
||||||||||||||||||||| |||||||
Sbjct: 12441717 cacgccacgttctacggcggcggcgacgc 12441689
Score = 48.1 bits (24), Expect = 0.010
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 584 ctcgtcggccaggcgctctccttc 607
||||||||||||||||||||||||
Sbjct: 2985378 ctcgtcggccaggcgctctccttc 2985355
Score = 46.1 bits (23), Expect = 0.038
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 452 tacttcaacctggtgctgatcacgaacgtggccgg 486
|||||| | |||||||||||| |||||||||||||
Sbjct: 2988377 tacttcgagctggtgctgatctcgaacgtggccgg 2988343
Score = 44.1 bits (22), Expect = 0.15
Identities = 64/78 (82%)
Strand = Plus / Plus
Query: 107 caggggtacggcgtgaacaacgcggcgctgagcacggcgctgttcgacgaggggctccgc 166
|||||||||||| | ||| |||||||||||| ||| | |||||| || ||||| ||
Sbjct: 14727774 caggggtacggcacggacacggcggcgctgagcgcggtgatgttcggggacgggctgagc 14727833
Query: 167 tgcggcgcgtgcttcgag 184
|||||||| |||||||||
Sbjct: 14727834 tgcggcgcctgcttcgag 14727851
Score = 44.1 bits (22), Expect = 0.15
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 294 acggcggctggtgcaacccgccccgcccgcacttcgac 331
||||||||||||||||| || ||||||| ||||||||
Sbjct: 3019152 acggcggctggtgcaacgcgacccgcccttacttcgac 3019189
Score = 44.1 bits (22), Expect = 0.15
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 294 acggcggctggtgcaacccgccccgcccgcacttcgac 331
||||||||||||||||| | ||||||| |||||||||
Sbjct: 3008771 acggcggctggtgcaacgctacccgccctcacttcgac 3008808
Score = 44.1 bits (22), Expect = 0.15
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 34 gccacgttctacggcggcagcgacgc 59
||||||||||||||||| ||||||||
Sbjct: 2980777 gccacgttctacggcgggagcgacgc 2980802
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 426 bits (215), Expect = e-116
Identities = 336/375 (89%), Gaps = 1/375 (0%)
Strand = Plus / Minus
Query: 26 gcgcgcacgccacgttctacggcggcagcgacgcttttggctttatgggcggggcctgcg 85
|||||||||| ||||||||||| ||||||||||| | || ||||||||||| ||||
Sbjct: 34207060 gcgcgcacgcaacgttctacgggggcagcgacgcgtcagggacgatgggcggggcgtgcg 34207001
Query: 86 ggtacggcaacctgtgacagccaggggtacggcgtgaacaacgcggcgctgagcacggcg 145
||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 34207000 ggtacgggaacctgt-acagccaggggtacggggtgaacaacgcggcgctgagcacggcg 34206942
Query: 146 ctgttcgacgaggggctccgctgcggcgcgtgcttcgagatcaggtgcgaggagcagccc 205
|||||| || |||| |||||||||||||||||||||||| ||||| | | ||||||
Sbjct: 34206941 ctgttcaactccgggcagagctgcggcgcgtgcttcgagatcaagtgcgtgaaccagccc 34206882
Query: 206 gggtggcggtggtgccggccagggaggccctccatcctggtcacggccaccaacttctgc 265
|||||| |||||||| || ||||| ||||||||||| |||| |||||||||||||||
Sbjct: 34206881 gggtgggagtggtgccacccggggagcccctccatcctcatcaccgccaccaacttctgc 34206822
Query: 266 ccgcccaactacgcgctcccctccgacgacggcggctggtgcaacccgccccgcccgcac 325
|||||||||||||| |||||||||||| ||||||||||||||||||| || ||||| |||
Sbjct: 34206821 ccgcccaactacgccctcccctccgacaacggcggctggtgcaaccctcctcgcccccac 34206762
Query: 326 ttcgacctcgccatgcccatgttcctccacatcgccgagtaccgcgccggcatcgtgccc 385
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 34206761 ttcgacctcgccatgcccatgttcctccacatcgccgagtaccgcgccggcatcgtcccc 34206702
Query: 386 gtctcctaccgccgg 400
|||||||||||||||
Sbjct: 34206701 gtctcctaccgccgg 34206687
Score = 317 bits (160), Expect = 7e-084
Identities = 256/288 (88%)
Strand = Plus / Minus
Query: 422 ggggtgcggttcacaatcaacggcttccggtacttcaacctggtgctgatcacgaacgtg 481
||||| |||||||| || ||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 34205299 ggggttcggttcacgataaacgggttcaggtacttcaacctggtgctgatcacgaacgtg 34205240
Query: 482 gccggcgcgggggacgtggtgcgcgcgagcgtcaaggcggccagcaccgggtggctgccc 541
||||| || |||||| | ||| | |||||||| |||| | | |||||||||||| |||||
Sbjct: 34205239 gccggggccggggacatcgtgagggcgagcgtgaaggggacgagcaccgggtggatgccc 34205180
Query: 542 atgtccaggaactggggccagaactggcagtccaacgccatcctcgtcggccaggcgctc 601
||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 34205179 atgtcgcggaactggggccagaactggcagtccaactccgtcctcgtcggccaggcgctc 34205120
Query: 602 tccttccgcgtcaccgccagcgaccgccgcacctccacctcctggaacgccgccccgagc 661
|| ||||||||||||| ||||||||||||||||||||| |||||||||||||| || |
Sbjct: 34205119 tcgttccgcgtcaccggcagcgaccgccgcacctccacatcctggaacgccgcacccgcc 34205060
Query: 662 acctggcagttcggccagaccttcgagggcaagaacttcagggtctga 709
||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct: 34205059 ggatggcacttcggccagaccttcgagggcaagaacttccgggtctga 34205012
Score = 93.7 bits (47), Expect = 2e-016
Identities = 78/87 (89%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 70 atgggcggggcctgcgggtacggcaacctgtgacagccaggggtacggcgtgaacaacgc 129
|||||||| || ||||||||||||||||||| || |||||||||||||||| |||||||
Sbjct: 17747228 atgggcggcgcgtgcgggtacggcaacctgt-acgaccaggggtacggcgtggacaacgc 17747286
Query: 130 ggcgctgagcacggcgctgttcgacga 156
|||||||||| |||||||||| ||||
Sbjct: 17747287 ggcgctgagccaggcgctgttcaacga 17747313
Score = 91.7 bits (46), Expect = 7e-016
Identities = 79/90 (87%)
Strand = Plus / Minus
Query: 248 acggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggctggtgc 307
||||| |||||||||||||| || |||||||||||||| ||||| |||||||||||||
Sbjct: 12444627 acggcgaccaacttctgccccccgaactacgcgctcccgagcgacggcggcggctggtgc 12444568
Query: 308 aacccgccccgcccgcacttcgacctcgcc 337
||||| || || | ||||||||||||||||
Sbjct: 12444567 aacccaccgcggcggcacttcgacctcgcc 12444538
Score = 89.7 bits (45), Expect = 3e-015
Identities = 135/165 (81%)
Strand = Plus / Plus
Query: 236 tccatcctggtcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgac 295
|||||| |||| ||||||||| || | |||||| ||||| ||||||||||| |||| |
Sbjct: 14733381 tccatcgtggtgacggccaccgacctgtgcccggccaaccacgcgctccccggcgaccgc 14733440
Query: 296 ggcggctggtgcaacccgccccgcccgcacttcgacctcgccatgcccatgttcctccac 355
|||||||||||||||||||| | || |||||||||||| || |||| ||||||| |
Sbjct: 14733441 ggcggctggtgcaacccgccgctccaccacttcgacctctcccagcccgccttcctccgc 14733500
Query: 356 atcgccgagtaccgcgccggcatcgtgcccgtctcctaccgccgg 400
|||||| | || |||||||||| ||||||||||||||||||
Sbjct: 14733501 atcgcccgcttccagtccggcatcgtccccgtctcctaccgccgg 14733545
Score = 83.8 bits (42), Expect = 2e-013
Identities = 69/78 (88%)
Strand = Plus / Minus
Query: 254 accaacttctgcccgcccaactacgcgctcccctccgacgacggcggctggtgcaacccg 313
|||||| | ||||||||||||||||| ||| || | |||||||||||||||||||||||
Sbjct: 2988621 accaacctgtgcccgcccaactacgccctctccagcaacgacggcggctggtgcaacccg 2988562
Query: 314 ccccgcccgcacttcgac 331
|| ||| |||||||||||
Sbjct: 2988561 cctcgcacgcacttcgac 2988544
Score = 83.8 bits (42), Expect = 2e-013
Identities = 75/86 (87%)
Strand = Plus / Minus
Query: 246 tcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggctggt 305
|||||||||||||| | ||||||||||||| || |||||| | || |||||||||||
Sbjct: 2985860 tcacggccaccaacctgtgcccgcccaactgggctctccccagcaacagcggcggctggt 2985801
Query: 306 gcaacccgccccgcccgcacttcgac 331
|||||||||||||||| |||||||||
Sbjct: 2985800 gcaacccgccccgccctcacttcgac 2985775
Score = 81.8 bits (41), Expect = 7e-013
Identities = 71/81 (87%)
Strand = Plus / Minus
Query: 551 aactggggccagaactggcagtccaacgccatcctcgtcggccaggcgctctccttccgc 610
|||||||| |||||||||||| |||||| ||||| |||| |||||||||||||||||
Sbjct: 12444306 aactgggggcagaactggcagagcaacgcgtacctcgacggcaaggcgctctccttccgc 12444247
Query: 611 gtcaccgccagcgaccgccgc 631
||||||||| ||||| |||||
Sbjct: 12444246 gtcaccgccggcgacggccgc 12444226
Score = 75.8 bits (38), Expect = 4e-011
Identities = 63/70 (90%), Gaps = 1/70 (1%)
Strand = Plus / Minus
Query: 82 tgcgggtacggcaacctgtgacagccaggggtacggcgtgaacaacgcggcgctgagcac 141
||||||||||| ||||||| ||||||||||||||||| || || ||||||||||||||
Sbjct: 12444789 tgcgggtacgggaacctgt-acagccaggggtacggcacgagcacggcggcgctgagcac 12444731
Query: 142 ggcgctgttc 151
||||||||||
Sbjct: 12444730 ggcgctgttc 12444721
Score = 71.9 bits (36), Expect = 7e-010
Identities = 72/84 (85%)
Strand = Plus / Plus
Query: 248 acggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggctggtgc 307
||||| |||||| | ||||||||||||| |||||||| ||||| |||||| ||||||
Sbjct: 17747402 acggcgaccaacctgtgcccgcccaactgggcgctcccgagcgacggcggcgggtggtgc 17747461
Query: 308 aacccgccccgcccgcacttcgac 331
|||||||| || ||||||||||||
Sbjct: 17747462 aacccgccgcggccgcacttcgac 17747485
Score = 69.9 bits (35), Expect = 3e-009
Identities = 66/75 (88%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 82 tgcgggtacggcaacctgtgacagccaggggtacggcgtgaacaacgcggcgctgagcac 141
||||||||||| ||||||| || ||||||||||||| | |||||||| |||||||||||
Sbjct: 3008455 tgcgggtacgggaacctgt-acgaccaggggtacggcatcaacaacgcagcgctgagcac 3008513
Query: 142 ggcgctgttcgacga 156
| |||||||| ||||
Sbjct: 3008514 gccgctgttcaacga 3008528
Score = 67.9 bits (34), Expect = 1e-008
Identities = 61/70 (87%)
Strand = Plus / Minus
Query: 547 caggaactggggccagaactggcagtccaacgccatcctcgtcggccaggcgctctcctt 606
||||||||||||| |||||||||||| ||||| ||||||||||||| ||||| ||||
Sbjct: 2988192 caggaactggggcgcgaactggcagtcgcacgccggcctcgtcggccagacgctcacctt 2988133
Query: 607 ccgcgtcacc 616
| ||||||||
Sbjct: 2988132 cggcgtcacc 2988123
Score = 65.9 bits (33), Expect = 4e-008
Identities = 71/84 (84%), Gaps = 6/84 (7%)
Strand = Plus / Plus
Query: 248 acggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggctggtgc 307
|||| |||||||||||||||||||||||| | ||||||| ||||||||||||||
Sbjct: 3003431 acgggcaccaacttctgcccgcccaactatgacctcccct------acggcggctggtgc 3003484
Query: 308 aacccgccccgcccgcacttcgac 331
||| || ||||||| |||||||||
Sbjct: 3003485 aacacgacccgccctcacttcgac 3003508
Score = 65.9 bits (33), Expect = 4e-008
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 291 acgacggcggctggtgcaacccgccccgcccgcacttcgac 331
||||||||||||||||||||||||| |||| ||||||||||
Sbjct: 2981007 acgacggcggctggtgcaacccgccgcgccagcacttcgac 2981047
Score = 61.9 bits (31), Expect = 6e-007
Identities = 65/75 (86%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 82 tgcgggtacggcaacctgtgacagccaggggtacggcgtgaacaacgcggcgctgagcac 141
||||||||||||||||||| || |||| | |||||| | |||||||| |||||||||||
Sbjct: 3018862 tgcgggtacggcaacctgt-acgaccagcgctacggcatcaacaacgcagcgctgagcac 3018920
Query: 142 ggcgctgttcgacga 156
| |||||||| ||||
Sbjct: 3018921 gccgctgttcaacga 3018935
Score = 58.0 bits (29), Expect = 1e-005
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 664 ctggcagttcggccagaccttcgagggca 692
|||||||||||||||||||||||||||||
Sbjct: 12444193 ctggcagttcggccagaccttcgagggca 12444165
Score = 52.0 bits (26), Expect = 6e-004
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 106 ccaggggtacggcgtgaacaacgcggcgctgagcacggcgctgttc 151
|||||| |||||| | ||||||||||||||||||||| | ||||||
Sbjct: 3003292 ccagggctacggcatcaacaacgcggcgctgagcacgccactgttc 3003337
Score = 52.0 bits (26), Expect = 6e-004
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 34 gccacgttctacggcggcagcgacgc 59
||||||||||||||||||||||||||
Sbjct: 2988926 gccacgttctacggcggcagcgacgc 2988901
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 531 ggtggctgcccatgtccaggaactggggccagaactggcag 571
|||||| | ||||| | ||||||||||||||||||||||||
Sbjct: 14734054 ggtggcaggccatggcgaggaactggggccagaactggcag 14734094
Score = 50.1 bits (25), Expect = 0.002
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 31 cacgccacgttctacggcggcagcgacgc 59
||||||||||||||||||||| |||||||
Sbjct: 12444954 cacgccacgttctacggcggcggcgacgc 12444926
Score = 48.1 bits (24), Expect = 0.010
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 584 ctcgtcggccaggcgctctccttc 607
||||||||||||||||||||||||
Sbjct: 2985288 ctcgtcggccaggcgctctccttc 2985265
Score = 46.1 bits (23), Expect = 0.038
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 452 tacttcaacctggtgctgatcacgaacgtggccgg 486
|||||| | |||||||||||| |||||||||||||
Sbjct: 2988287 tacttcgagctggtgctgatctcgaacgtggccgg 2988253
Score = 44.1 bits (22), Expect = 0.15
Identities = 64/78 (82%)
Strand = Plus / Plus
Query: 107 caggggtacggcgtgaacaacgcggcgctgagcacggcgctgttcgacgaggggctccgc 166
|||||||||||| | ||| |||||||||||| ||| | |||||| || ||||| ||
Sbjct: 14733240 caggggtacggcacggacacggcggcgctgagcgcggtgatgttcggggacgggctgagc 14733299
Query: 167 tgcggcgcgtgcttcgag 184
|||||||| |||||||||
Sbjct: 14733300 tgcggcgcctgcttcgag 14733317
Score = 44.1 bits (22), Expect = 0.15
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 294 acggcggctggtgcaacccgccccgcccgcacttcgac 331
||||||||||||||||| || ||||||| ||||||||
Sbjct: 3019037 acggcggctggtgcaacgcgacccgcccttacttcgac 3019074
Score = 44.1 bits (22), Expect = 0.15
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 294 acggcggctggtgcaacccgccccgcccgcacttcgac 331
||||||||||||||||| | ||||||| |||||||||
Sbjct: 3008657 acggcggctggtgcaacgctacccgccctcacttcgac 3008694
Score = 44.1 bits (22), Expect = 0.15
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 34 gccacgttctacggcggcagcgacgc 59
||||||||||||||||| ||||||||
Sbjct: 2980666 gccacgttctacggcgggagcgacgc 2980691
>dbj|AK063455.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-115-G06, full
insert sequence
Length = 1653
Score = 317 bits (160), Expect = 7e-084
Identities = 256/288 (88%)
Strand = Plus / Plus
Query: 422 ggggtgcggttcacaatcaacggcttccggtacttcaacctggtgctgatcacgaacgtg 481
||||| |||||||| || ||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 65 ggggttcggttcacgataaacgggttcaggtacttcaacctggtgctgatcacgaacgtg 124
Query: 482 gccggcgcgggggacgtggtgcgcgcgagcgtcaaggcggccagcaccgggtggctgccc 541
||||| || |||||| | ||| | |||||||| |||| | | |||||||||||| |||||
Sbjct: 125 gccggggccggggacatcgtgagggcgagcgtgaaggggacgagcaccgggtggatgccc 184
Query: 542 atgtccaggaactggggccagaactggcagtccaacgccatcctcgtcggccaggcgctc 601
||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 185 atgtcgcggaactggggccagaactggcagtccaactccgtcctcgtcggccaggcgctc 244
Query: 602 tccttccgcgtcaccgccagcgaccgccgcacctccacctcctggaacgccgccccgagc 661
|| ||||||||||||| ||||||||||||||||||||| |||||||||||||| || |
Sbjct: 245 tcgttccgcgtcaccggcagcgaccgccgcacctccacatcctggaacgccgcacccgcc 304
Query: 662 acctggcagttcggccagaccttcgagggcaagaacttcagggtctga 709
||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct: 305 ggatggcacttcggccagaccttcgagggcaagaacttccgggtctga 352
>dbj|AK100179.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023029P10, full
insert sequence
Length = 1311
Score = 186 bits (94), Expect = 2e-044
Identities = 145/162 (89%)
Strand = Plus / Plus
Query: 248 acggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggctggtgc 307
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 349 acggccaccaacttctgcccgcccaactacggcctccccagcgacgacggcggctggtgc 408
Query: 308 aacccgccccgcccgcacttcgacctcgccatgcccatgttcctccacatcgccgagtac 367
|||||||||||||| ||||||||| | ||| ||| ||||||||||||||| |||||
Sbjct: 409 aacccgccccgccctcacttcgacatggccgagccggcattcctccacatcgcccagtac 468
Query: 368 cgcgccggcatcgtgcccgtctcctaccgccgggtgccgtgc 409
|||||||||||||| |||||||||| |||| |||||||||||
Sbjct: 469 cgcgccggcatcgtccccgtctccttccgcagggtgccgtgc 510
Score = 117 bits (59), Expect = 1e-023
Identities = 114/131 (87%), Gaps = 1/131 (0%)
Strand = Plus / Plus
Query: 26 gcgcgcacgccacgttctacggcggcagcgacgcttttggctttatgggcggggcctgcg 85
|||| ||||||||||||||||||||| |||| |||| ||| ||||||||||| ||||
Sbjct: 140 gcgcccacgccacgttctacggcggcggcgatgcttccggcaccatgggcggggcttgcg 199
Query: 86 ggtacggcaacctgtgacagccaggggtacggcgtgaacaacgcggcgctgagcacggcg 145
| ||||||||||||| ||||||| ||||| ||| ||||| |||||||||||||||||||
Sbjct: 200 gttacggcaacctgt-acagccaagggtatggcacgaacaccgcggcgctgagcacggcg 258
Query: 146 ctgttcgacga 156
|||||| ||||
Sbjct: 259 ctgttcaacga 269
Score = 107 bits (54), Expect = 1e-020
Identities = 96/110 (87%)
Strand = Plus / Plus
Query: 525 gcaccgggtggctgcccatgtccaggaactggggccagaactggcagtccaacgccatcc 584
|||||||||||| ||||||||| ||||||||||||||||||||||| |||||| |||
Sbjct: 626 gcaccgggtggcagcccatgtcgcggaactggggccagaactggcagagcaacgcgttcc 685
Query: 585 tcgtcggccaggcgctctccttccgcgtcaccgccagcgaccgccgcacc 634
||| ||||||| |||||||||| ||||||||||||||| ||||||||
Sbjct: 686 tcgacggccagagcctctccttccaggtcaccgccagcgacggccgcacc 735
Score = 54.0 bits (27), Expect = 2e-004
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 664 ctggcagttcggccagaccttcgaggg 690
|||||||||||||||||||||||||||
Sbjct: 765 ctggcagttcggccagaccttcgaggg 791
Score = 54.0 bits (27), Expect = 2e-004
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 452 tacttcaacctggtgctgatcacgaacgtggccggcgcgggggacgt 498
|||||||||||||||||| | || |||||||||||||| || |||||
Sbjct: 553 tacttcaacctggtgctggtgaccaacgtggccggcgccggcgacgt 599
>dbj|AK105988.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-G10, full
insert sequence
Length = 2440
Score = 186 bits (94), Expect = 2e-044
Identities = 145/162 (89%)
Strand = Plus / Plus
Query: 248 acggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggctggtgc 307
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 348 acggccaccaacttctgcccgcccaactacggcctccccagcgacgacggcggctggtgc 407
Query: 308 aacccgccccgcccgcacttcgacctcgccatgcccatgttcctccacatcgccgagtac 367
|||||||||||||| ||||||||| | ||| ||| ||||||||||||||| |||||
Sbjct: 408 aacccgccccgccctcacttcgacatggccgagccggcattcctccacatcgcccagtac 467
Query: 368 cgcgccggcatcgtgcccgtctcctaccgccgggtgccgtgc 409
|||||||||||||| |||||||||| |||| |||||||||||
Sbjct: 468 cgcgccggcatcgtccccgtctccttccgcagggtgccgtgc 509
Score = 117 bits (59), Expect = 1e-023
Identities = 114/131 (87%), Gaps = 1/131 (0%)
Strand = Plus / Plus
Query: 26 gcgcgcacgccacgttctacggcggcagcgacgcttttggctttatgggcggggcctgcg 85
|||| ||||||||||||||||||||| |||| |||| ||| ||||||||||| ||||
Sbjct: 139 gcgcccacgccacgttctacggcggcggcgatgcttccggcaccatgggcggggcttgcg 198
Query: 86 ggtacggcaacctgtgacagccaggggtacggcgtgaacaacgcggcgctgagcacggcg 145
| ||||||||||||| ||||||| ||||| ||| ||||| |||||||||||||||||||
Sbjct: 199 gttacggcaacctgt-acagccaagggtatggcacgaacaccgcggcgctgagcacggcg 257
Query: 146 ctgttcgacga 156
|||||| ||||
Sbjct: 258 ctgttcaacga 268
Score = 107 bits (54), Expect = 1e-020
Identities = 96/110 (87%)
Strand = Plus / Plus
Query: 525 gcaccgggtggctgcccatgtccaggaactggggccagaactggcagtccaacgccatcc 584
|||||||||||| ||||||||| ||||||||||||||||||||||| |||||| |||
Sbjct: 625 gcaccgggtggcagcccatgtcgcggaactggggccagaactggcagagcaacgcgttcc 684
Query: 585 tcgtcggccaggcgctctccttccgcgtcaccgccagcgaccgccgcacc 634
||| ||||||| |||||||||| ||||||||||||||| ||||||||
Sbjct: 685 tcgacggccagagcctctccttccaggtcaccgccagcgacggccgcacc 734
Score = 54.0 bits (27), Expect = 2e-004
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 664 ctggcagttcggccagaccttcgaggg 690
|||||||||||||||||||||||||||
Sbjct: 764 ctggcagttcggccagaccttcgaggg 790
Score = 54.0 bits (27), Expect = 2e-004
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 452 tacttcaacctggtgctgatcacgaacgtggccggcgcgggggacgt 498
|||||||||||||||||| | || |||||||||||||| || |||||
Sbjct: 552 tacttcaacctggtgctggtgaccaacgtggccggcgccggcgacgt 598
>ref|XM_475418.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 741
Score = 186 bits (94), Expect = 2e-044
Identities = 145/162 (89%)
Strand = Plus / Plus
Query: 248 acggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggctggtgc 307
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 286 acggccaccaacttctgcccgcccaactacggcctccccagcgacgacggcggctggtgc 345
Query: 308 aacccgccccgcccgcacttcgacctcgccatgcccatgttcctccacatcgccgagtac 367
|||||||||||||| ||||||||| | ||| ||| ||||||||||||||| |||||
Sbjct: 346 aacccgccccgccctcacttcgacatggccgagccggcattcctccacatcgcccagtac 405
Query: 368 cgcgccggcatcgtgcccgtctcctaccgccgggtgccgtgc 409
|||||||||||||| |||||||||| |||| |||||||||||
Sbjct: 406 cgcgccggcatcgtccccgtctccttccgcagggtgccgtgc 447
Score = 117 bits (59), Expect = 1e-023
Identities = 114/131 (87%), Gaps = 1/131 (0%)
Strand = Plus / Plus
Query: 26 gcgcgcacgccacgttctacggcggcagcgacgcttttggctttatgggcggggcctgcg 85
|||| ||||||||||||||||||||| |||| |||| ||| ||||||||||| ||||
Sbjct: 77 gcgcccacgccacgttctacggcggcggcgatgcttccggcaccatgggcggggcttgcg 136
Query: 86 ggtacggcaacctgtgacagccaggggtacggcgtgaacaacgcggcgctgagcacggcg 145
| ||||||||||||| ||||||| ||||| ||| ||||| |||||||||||||||||||
Sbjct: 137 gttacggcaacctgt-acagccaagggtatggcacgaacaccgcggcgctgagcacggcg 195
Query: 146 ctgttcgacga 156
|||||| ||||
Sbjct: 196 ctgttcaacga 206
Score = 107 bits (54), Expect = 1e-020
Identities = 96/110 (87%)
Strand = Plus / Plus
Query: 525 gcaccgggtggctgcccatgtccaggaactggggccagaactggcagtccaacgccatcc 584
|||||||||||| ||||||||| ||||||||||||||||||||||| |||||| |||
Sbjct: 563 gcaccgggtggcagcccatgtcgcggaactggggccagaactggcagagcaacgcgttcc 622
Query: 585 tcgtcggccaggcgctctccttccgcgtcaccgccagcgaccgccgcacc 634
||| ||||||| |||||||||| ||||||||||||||| ||||||||
Sbjct: 623 tcgacggccagagcctctccttccaggtcaccgccagcgacggccgcacc 672
Score = 54.0 bits (27), Expect = 2e-004
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 664 ctggcagttcggccagaccttcgaggg 690
|||||||||||||||||||||||||||
Sbjct: 702 ctggcagttcggccagaccttcgaggg 728
Score = 54.0 bits (27), Expect = 2e-004
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 452 tacttcaacctggtgctgatcacgaacgtggccggcgcgggggacgt 498
|||||||||||||||||| | || |||||||||||||| || |||||
Sbjct: 490 tacttcaacctggtgctggtgaccaacgtggccggcgccggcgacgt 536
>gb|AC144737.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
OSJNBa0018K15, complete sequence
Length = 168519
Score = 170 bits (86), Expect = 1e-039
Identities = 134/150 (89%)
Strand = Plus / Minus
Query: 248 acggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggctggtgc 307
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 38870 acggccaccaacttctgcccgcccaactacggcctccccagcgacgacggcggctggtgc 38811
Query: 308 aacccgccccgcccgcacttcgacctcgccatgcccatgttcctccacatcgccgagtac 367
|||||||||||||| ||||||||| | ||| ||| ||||||||||||||| |||||
Sbjct: 38810 aacccgccccgccctcacttcgacatggccgagccggcattcctccacatcgcccagtac 38751
Query: 368 cgcgccggcatcgtgcccgtctcctaccgc 397
|||||||||||||| |||||||||| ||||
Sbjct: 38750 cgcgccggcatcgtccccgtctccttccgc 38721
Score = 107 bits (54), Expect = 1e-020
Identities = 96/110 (87%)
Strand = Plus / Minus
Query: 525 gcaccgggtggctgcccatgtccaggaactggggccagaactggcagtccaacgccatcc 584
|||||||||||| ||||||||| ||||||||||||||||||||||| |||||| |||
Sbjct: 38077 gcaccgggtggcagcccatgtcgcggaactggggccagaactggcagagcaacgcgttcc 38018
Query: 585 tcgtcggccaggcgctctccttccgcgtcaccgccagcgaccgccgcacc 634
||| ||||||| |||||||||| ||||||||||||||| ||||||||
Sbjct: 38017 tcgacggccagagcctctccttccaggtcaccgccagcgacggccgcacc 37968
Score = 87.7 bits (44), Expect = 1e-014
Identities = 75/84 (89%), Gaps = 1/84 (1%)
Strand = Plus / Minus
Query: 73 ggcggggcctgcgggtacggcaacctgtgacagccaggggtacggcgtgaacaacgcggc 132
|||||||| ||||| ||||||||||||| ||||||| ||||| ||| ||||| ||||||
Sbjct: 39032 ggcggggcttgcggttacggcaacctgt-acagccaagggtatggcacgaacaccgcggc 38974
Query: 133 gctgagcacggcgctgttcgacga 156
||||||||||||||||||| ||||
Sbjct: 38973 gctgagcacggcgctgttcaacga 38950
Score = 54.0 bits (27), Expect = 2e-004
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 452 tacttcaacctggtgctgatcacgaacgtggccggcgcgggggacgt 498
|||||||||||||||||| | || |||||||||||||| || |||||
Sbjct: 38150 tacttcaacctggtgctggtgaccaacgtggccggcgccggcgacgt 38104
Score = 54.0 bits (27), Expect = 2e-004
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 664 ctggcagttcggccagaccttcgaggg 690
|||||||||||||||||||||||||||
Sbjct: 37938 ctggcagttcggccagaccttcgaggg 37912
Score = 48.1 bits (24), Expect = 0.010
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 26 gcgcgcacgccacgttctacggcggcagcgacgctt 61
|||| ||||||||||||||||||||| |||| ||||
Sbjct: 39173 gcgcccacgccacgttctacggcggcggcgatgctt 39138
>gb|AACV01012416.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg012416, whole
genome shotgun sequence
Length = 33179
Score = 170 bits (86), Expect = 1e-039
Identities = 134/150 (89%)
Strand = Plus / Plus
Query: 248 acggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggctggtgc 307
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 9219 acggccaccaacttctgcccgcccaactacggcctccccagcgacgacggcggctggtgc 9278
Query: 308 aacccgccccgcccgcacttcgacctcgccatgcccatgttcctccacatcgccgagtac 367
|||||||||||||| ||||||||| | ||| ||| ||||||||||||||| |||||
Sbjct: 9279 aacccgccccgccctcacttcgacatggccgagccggcattcctccacatcgcccagtac 9338
Query: 368 cgcgccggcatcgtgcccgtctcctaccgc 397
|||||||||||||| |||||||||| ||||
Sbjct: 9339 cgcgccggcatcgtccccgtctccttccgc 9368
Score = 107 bits (54), Expect = 1e-020
Identities = 96/110 (87%)
Strand = Plus / Plus
Query: 525 gcaccgggtggctgcccatgtccaggaactggggccagaactggcagtccaacgccatcc 584
|||||||||||| ||||||||| ||||||||||||||||||||||| |||||| |||
Sbjct: 10012 gcaccgggtggcagcccatgtcgcggaactggggccagaactggcagagcaacgcgttcc 10071
Query: 585 tcgtcggccaggcgctctccttccgcgtcaccgccagcgaccgccgcacc 634
||| ||||||| |||||||||| ||||||||||||||| ||||||||
Sbjct: 10072 tcgacggccagagcctctccttccaggtcaccgccagcgacggccgcacc 10121
Score = 87.7 bits (44), Expect = 1e-014
Identities = 75/84 (89%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 73 ggcggggcctgcgggtacggcaacctgtgacagccaggggtacggcgtgaacaacgcggc 132
|||||||| ||||| ||||||||||||| ||||||| ||||| ||| ||||| ||||||
Sbjct: 9057 ggcggggcttgcggttacggcaacctgt-acagccaagggtatggcacgaacaccgcggc 9115
Query: 133 gctgagcacggcgctgttcgacga 156
||||||||||||||||||| ||||
Sbjct: 9116 gctgagcacggcgctgttcaacga 9139
Score = 54.0 bits (27), Expect = 2e-004
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 664 ctggcagttcggccagaccttcgaggg 690
|||||||||||||||||||||||||||
Sbjct: 10151 ctggcagttcggccagaccttcgaggg 10177
Score = 54.0 bits (27), Expect = 2e-004
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 452 tacttcaacctggtgctgatcacgaacgtggccggcgcgggggacgt 498
|||||||||||||||||| | || |||||||||||||| || |||||
Sbjct: 9939 tacttcaacctggtgctggtgaccaacgtggccggcgccggcgacgt 9985
Score = 48.1 bits (24), Expect = 0.010
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 26 gcgcgcacgccacgttctacggcggcagcgacgctt 61
|||| ||||||||||||||||||||| |||| ||||
Sbjct: 8916 gcgcccacgccacgttctacggcggcggcgatgctt 8951
>ref|NT_107213.1| Oryza sativa (japonica cultivar-group)
Length = 2036819
Score = 170 bits (86), Expect = 1e-039
Identities = 134/150 (89%)
Strand = Plus / Minus
Query: 248 acggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggctggtgc 307
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 1907170 acggccaccaacttctgcccgcccaactacggcctccccagcgacgacggcggctggtgc 1907111
Query: 308 aacccgccccgcccgcacttcgacctcgccatgcccatgttcctccacatcgccgagtac 367
|||||||||||||| ||||||||| | ||| ||| ||||||||||||||| |||||
Sbjct: 1907110 aacccgccccgccctcacttcgacatggccgagccggcattcctccacatcgcccagtac 1907051
Query: 368 cgcgccggcatcgtgcccgtctcctaccgc 397
|||||||||||||| |||||||||| ||||
Sbjct: 1907050 cgcgccggcatcgtccccgtctccttccgc 1907021
Score = 107 bits (54), Expect = 1e-020
Identities = 96/110 (87%)
Strand = Plus / Minus
Query: 525 gcaccgggtggctgcccatgtccaggaactggggccagaactggcagtccaacgccatcc 584
|||||||||||| ||||||||| ||||||||||||||||||||||| |||||| |||
Sbjct: 1906377 gcaccgggtggcagcccatgtcgcggaactggggccagaactggcagagcaacgcgttcc 1906318
Query: 585 tcgtcggccaggcgctctccttccgcgtcaccgccagcgaccgccgcacc 634
||| ||||||| |||||||||| ||||||||||||||| ||||||||
Sbjct: 1906317 tcgacggccagagcctctccttccaggtcaccgccagcgacggccgcacc 1906268
Score = 87.7 bits (44), Expect = 1e-014
Identities = 75/84 (89%), Gaps = 1/84 (1%)
Strand = Plus / Minus
Query: 73 ggcggggcctgcgggtacggcaacctgtgacagccaggggtacggcgtgaacaacgcggc 132
|||||||| ||||| ||||||||||||| ||||||| ||||| ||| ||||| ||||||
Sbjct: 1907332 ggcggggcttgcggttacggcaacctgt-acagccaagggtatggcacgaacaccgcggc 1907274
Query: 133 gctgagcacggcgctgttcgacga 156
||||||||||||||||||| ||||
Sbjct: 1907273 gctgagcacggcgctgttcaacga 1907250
Score = 54.0 bits (27), Expect = 2e-004
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 452 tacttcaacctggtgctgatcacgaacgtggccggcgcgggggacgt 498
|||||||||||||||||| | || |||||||||||||| || |||||
Sbjct: 1906450 tacttcaacctggtgctggtgaccaacgtggccggcgccggcgacgt 1906404
Score = 54.0 bits (27), Expect = 2e-004
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 664 ctggcagttcggccagaccttcgaggg 690
|||||||||||||||||||||||||||
Sbjct: 1906238 ctggcagttcggccagaccttcgaggg 1906212
Score = 48.1 bits (24), Expect = 0.010
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 26 gcgcgcacgccacgttctacggcggcagcgacgctt 61
|||| ||||||||||||||||||||| |||| ||||
Sbjct: 1907473 gcgcccacgccacgttctacggcggcggcgatgctt 1907438
>gb|CH401206.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000043 genomic
scaffold, whole genome shotgun sequence
Length = 11965857
Score = 170 bits (86), Expect = 1e-039
Identities = 134/150 (89%)
Strand = Plus / Minus
Query: 248 acggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggctggtgc 307
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 5729338 acggccaccaacttctgcccgcccaactacggcctccccagcgacgacggcggctggtgc 5729279
Query: 308 aacccgccccgcccgcacttcgacctcgccatgcccatgttcctccacatcgccgagtac 367
|||||||||||||| ||||||||| | ||| ||| ||||||||||||||| |||||
Sbjct: 5729278 aacccgccccgccctcacttcgacatggccgagccggcattcctccacatcgcccagtac 5729219
Query: 368 cgcgccggcatcgtgcccgtctcctaccgc 397
|||||||||||||| |||||||||| ||||
Sbjct: 5729218 cgcgccggcatcgtccccgtctccttccgc 5729189
Score = 107 bits (54), Expect = 1e-020
Identities = 96/110 (87%)
Strand = Plus / Minus
Query: 525 gcaccgggtggctgcccatgtccaggaactggggccagaactggcagtccaacgccatcc 584
|||||||||||| ||||||||| ||||||||||||||||||||||| |||||| |||
Sbjct: 5728545 gcaccgggtggcagcccatgtcgcggaactggggccagaactggcagagcaacgcgttcc 5728486
Query: 585 tcgtcggccaggcgctctccttccgcgtcaccgccagcgaccgccgcacc 634
||| ||||||| |||||||||| ||||||||||||||| ||||||||
Sbjct: 5728485 tcgacggccagagcctctccttccaggtcaccgccagcgacggccgcacc 5728436
Score = 87.7 bits (44), Expect = 1e-014
Identities = 75/84 (89%), Gaps = 1/84 (1%)
Strand = Plus / Minus
Query: 73 ggcggggcctgcgggtacggcaacctgtgacagccaggggtacggcgtgaacaacgcggc 132
|||||||| ||||| ||||||||||||| ||||||| ||||| ||| ||||| ||||||
Sbjct: 5729500 ggcggggcttgcggttacggcaacctgt-acagccaagggtatggcacgaacaccgcggc 5729442
Query: 133 gctgagcacggcgctgttcgacga 156
||||||||||||||||||| ||||
Sbjct: 5729441 gctgagcacggcgctgttcaacga 5729418
Score = 54.0 bits (27), Expect = 2e-004
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 452 tacttcaacctggtgctgatcacgaacgtggccggcgcgggggacgt 498
|||||||||||||||||| | || |||||||||||||| || |||||
Sbjct: 5728618 tacttcaacctggtgctggtgaccaacgtggccggcgccggcgacgt 5728572
Score = 54.0 bits (27), Expect = 2e-004
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 664 ctggcagttcggccagaccttcgaggg 690
|||||||||||||||||||||||||||
Sbjct: 5728406 ctggcagttcggccagaccttcgaggg 5728380
Score = 48.1 bits (24), Expect = 0.010
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 26 gcgcgcacgccacgttctacggcggcagcgacgctt 61
|||| ||||||||||||||||||||| |||| ||||
Sbjct: 5729641 gcgcccacgccacgttctacggcggcggcgatgctt 5729606
Score = 44.1 bits (22), Expect = 0.15
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 821 tactactgctactggagtacta 842
||||||||||||||||||||||
Sbjct: 2021662 tactactgctactggagtacta 2021683
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 170 bits (86), Expect = 1e-039
Identities = 134/150 (89%)
Strand = Plus / Minus
Query: 248 acggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggctggtgc 307
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 23029651 acggccaccaacttctgcccgcccaactacggcctccccagcgacgacggcggctggtgc 23029592
Query: 308 aacccgccccgcccgcacttcgacctcgccatgcccatgttcctccacatcgccgagtac 367
|||||||||||||| ||||||||| | ||| ||| ||||||||||||||| |||||
Sbjct: 23029591 aacccgccccgccctcacttcgacatggccgagccggcattcctccacatcgcccagtac 23029532
Query: 368 cgcgccggcatcgtgcccgtctcctaccgc 397
|||||||||||||| |||||||||| ||||
Sbjct: 23029531 cgcgccggcatcgtccccgtctccttccgc 23029502
Score = 107 bits (54), Expect = 1e-020
Identities = 96/110 (87%)
Strand = Plus / Minus
Query: 525 gcaccgggtggctgcccatgtccaggaactggggccagaactggcagtccaacgccatcc 584
|||||||||||| ||||||||| ||||||||||||||||||||||| |||||| |||
Sbjct: 23028858 gcaccgggtggcagcccatgtcgcggaactggggccagaactggcagagcaacgcgttcc 23028799
Query: 585 tcgtcggccaggcgctctccttccgcgtcaccgccagcgaccgccgcacc 634
||| ||||||| |||||||||| ||||||||||||||| ||||||||
Sbjct: 23028798 tcgacggccagagcctctccttccaggtcaccgccagcgacggccgcacc 23028749
Score = 87.7 bits (44), Expect = 1e-014
Identities = 75/84 (89%), Gaps = 1/84 (1%)
Strand = Plus / Minus
Query: 73 ggcggggcctgcgggtacggcaacctgtgacagccaggggtacggcgtgaacaacgcggc 132
|||||||| ||||| ||||||||||||| ||||||| ||||| ||| ||||| ||||||
Sbjct: 23029813 ggcggggcttgcggttacggcaacctgt-acagccaagggtatggcacgaacaccgcggc 23029755
Query: 133 gctgagcacggcgctgttcgacga 156
||||||||||||||||||| ||||
Sbjct: 23029754 gctgagcacggcgctgttcaacga 23029731
Score = 61.9 bits (31), Expect = 6e-007
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 110 gggtacggcgtgaacaacgcggcgctgagcacggcgctgttcgacga 156
|||||||| |||||||||||||||||||| ||||||||||| ||||
Sbjct: 11514686 gggtacgggctgaacaacgcggcgctgagctcggcgctgttcaacga 11514640
Score = 54.0 bits (27), Expect = 2e-004
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 452 tacttcaacctggtgctgatcacgaacgtggccggcgcgggggacgt 498
|||||||||||||||||| | || |||||||||||||| || |||||
Sbjct: 23028931 tacttcaacctggtgctggtgaccaacgtggccggcgccggcgacgt 23028885
Score = 54.0 bits (27), Expect = 2e-004
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 664 ctggcagttcggccagaccttcgaggg 690
|||||||||||||||||||||||||||
Sbjct: 23028719 ctggcagttcggccagaccttcgaggg 23028693
Score = 54.0 bits (27), Expect = 2e-004
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 110 gggtacggcgtgaacaacgcggcgctgagcacggcgctgttcgacga 156
|||||||| || ||||||||||||||||| ||||||||||| ||||
Sbjct: 11557770 gggtacgggctgtacaacgcggcgctgagctcggcgctgttcaacga 11557724
Score = 52.0 bits (26), Expect = 6e-004
Identities = 71/86 (82%)
Strand = Plus / Minus
Query: 246 tcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggctggt 305
|||||||||||||||| |||||||| |||| ||||| ||| | || |||||| ||||
Sbjct: 11557637 tcacggccaccaacttatgcccgcctaactgggcgctgcccagcaacagcggcgggtggt 11557578
Query: 306 gcaacccgccccgcccgcacttcgac 331
||||||| || || | ||||||||||
Sbjct: 11557577 gcaacccaccgcggcagcacttcgac 11557552
Score = 52.0 bits (26), Expect = 6e-004
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 246 tcacggccaccaacttctgcccgcccaactacgc 279
|||||||||||||| | |||||||||||||||||
Sbjct: 11514556 tcacggccaccaacctgtgcccgcccaactacgc 11514523
Score = 48.1 bits (24), Expect = 0.010
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 26 gcgcgcacgccacgttctacggcggcagcgacgctt 61
|||| ||||||||||||||||||||| |||| ||||
Sbjct: 23029954 gcgcccacgccacgttctacggcggcggcgatgctt 23029919
Score = 46.1 bits (23), Expect = 0.038
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 289 cgacgacggcggctggtgcaacccgccccgcccgcacttcgac 331
||||| |||||| |||||||||||||| ||| ||||||||||
Sbjct: 11514513 cgacgccggcgggtggtgcaacccgcctcgcaagcacttcgac 11514471
Score = 44.1 bits (22), Expect = 0.15
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 821 tactactgctactggagtacta 842
||||||||||||||||||||||
Sbjct: 19321975 tactactgctactggagtacta 19321996
Score = 44.1 bits (22), Expect = 0.15
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 547 caggaactggggccagaactggcagtccaacgcc 580
||||||||||||||| ||||||||| |||||||
Sbjct: 11514109 caggaactggggccaaaactggcagagcaacgcc 11514076
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 170 bits (86), Expect = 1e-039
Identities = 134/150 (89%)
Strand = Plus / Minus
Query: 248 acggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggctggtgc 307
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 23353334 acggccaccaacttctgcccgcccaactacggcctccccagcgacgacggcggctggtgc 23353275
Query: 308 aacccgccccgcccgcacttcgacctcgccatgcccatgttcctccacatcgccgagtac 367
|||||||||||||| ||||||||| | ||| ||| ||||||||||||||| |||||
Sbjct: 23353274 aacccgccccgccctcacttcgacatggccgagccggcattcctccacatcgcccagtac 23353215
Query: 368 cgcgccggcatcgtgcccgtctcctaccgc 397
|||||||||||||| |||||||||| ||||
Sbjct: 23353214 cgcgccggcatcgtccccgtctccttccgc 23353185
Score = 107 bits (54), Expect = 1e-020
Identities = 96/110 (87%)
Strand = Plus / Minus
Query: 525 gcaccgggtggctgcccatgtccaggaactggggccagaactggcagtccaacgccatcc 584
|||||||||||| ||||||||| ||||||||||||||||||||||| |||||| |||
Sbjct: 23352541 gcaccgggtggcagcccatgtcgcggaactggggccagaactggcagagcaacgcgttcc 23352482
Query: 585 tcgtcggccaggcgctctccttccgcgtcaccgccagcgaccgccgcacc 634
||| ||||||| |||||||||| ||||||||||||||| ||||||||
Sbjct: 23352481 tcgacggccagagcctctccttccaggtcaccgccagcgacggccgcacc 23352432
Score = 87.7 bits (44), Expect = 1e-014
Identities = 75/84 (89%), Gaps = 1/84 (1%)
Strand = Plus / Minus
Query: 73 ggcggggcctgcgggtacggcaacctgtgacagccaggggtacggcgtgaacaacgcggc 132
|||||||| ||||| ||||||||||||| ||||||| ||||| ||| ||||| ||||||
Sbjct: 23353496 ggcggggcttgcggttacggcaacctgt-acagccaagggtatggcacgaacaccgcggc 23353438
Query: 133 gctgagcacggcgctgttcgacga 156
||||||||||||||||||| ||||
Sbjct: 23353437 gctgagcacggcgctgttcaacga 23353414
Score = 61.9 bits (31), Expect = 6e-007
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 110 gggtacggcgtgaacaacgcggcgctgagcacggcgctgttcgacga 156
|||||||| |||||||||||||||||||| ||||||||||| ||||
Sbjct: 11318850 gggtacgggctgaacaacgcggcgctgagctcggcgctgttcaacga 11318804
Score = 54.0 bits (27), Expect = 2e-004
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 452 tacttcaacctggtgctgatcacgaacgtggccggcgcgggggacgt 498
|||||||||||||||||| | || |||||||||||||| || |||||
Sbjct: 23352614 tacttcaacctggtgctggtgaccaacgtggccggcgccggcgacgt 23352568
Score = 54.0 bits (27), Expect = 2e-004
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 664 ctggcagttcggccagaccttcgaggg 690
|||||||||||||||||||||||||||
Sbjct: 23352402 ctggcagttcggccagaccttcgaggg 23352376
Score = 54.0 bits (27), Expect = 2e-004
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 110 gggtacggcgtgaacaacgcggcgctgagcacggcgctgttcgacga 156
|||||||| || ||||||||||||||||| ||||||||||| ||||
Sbjct: 11294197 gggtacgggctgtacaacgcggcgctgagctcggcgctgttcaacga 11294151
Score = 52.0 bits (26), Expect = 6e-004
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 246 tcacggccaccaacttctgcccgcccaactacgc 279
|||||||||||||| | |||||||||||||||||
Sbjct: 11318720 tcacggccaccaacctgtgcccgcccaactacgc 11318687
Score = 52.0 bits (26), Expect = 6e-004
Identities = 71/86 (82%)
Strand = Plus / Minus
Query: 246 tcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggctggt 305
|||||||||||||||| |||||||| |||| ||||| ||| | || |||||| ||||
Sbjct: 11294064 tcacggccaccaacttatgcccgcctaactgggcgctgcccagcaacagcggcgggtggt 11294005
Query: 306 gcaacccgccccgcccgcacttcgac 331
||||||| || || | ||||||||||
Sbjct: 11294004 gcaacccaccgcggcagcacttcgac 11293979
Score = 48.1 bits (24), Expect = 0.010
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 26 gcgcgcacgccacgttctacggcggcagcgacgctt 61
|||| ||||||||||||||||||||| |||| ||||
Sbjct: 23353637 gcgcccacgccacgttctacggcggcggcgatgctt 23353602
Score = 46.1 bits (23), Expect = 0.038
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 289 cgacgacggcggctggtgcaacccgccccgcccgcacttcgac 331
||||| |||||| |||||||||||||| ||| ||||||||||
Sbjct: 11318677 cgacgccggcgggtggtgcaacccgcctcgcaagcacttcgac 11318635
Score = 44.1 bits (22), Expect = 0.15
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 821 tactactgctactggagtacta 842
||||||||||||||||||||||
Sbjct: 19631033 tactactgctactggagtacta 19631054
Score = 44.1 bits (22), Expect = 0.15
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 547 caggaactggggccagaactggcagtccaacgcc 580
||||||||||||||| ||||||||| |||||||
Sbjct: 11318273 caggaactggggccaaaactggcagagcaacgcc 11318240
>gb|AU029532.1|AU029532 AU029532 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E31041_8Z, mRNA sequence
Length = 524
Score = 153 bits (77), Expect = 2e-034
Identities = 120/132 (90%), Gaps = 3/132 (2%)
Strand = Plus / Plus
Query: 524 agcaccgggtggctgccc-atgtccaggaactggggccagaactggcagtccaacgcc-- 580
|||||||||||| ||||| ||||| ||||||||||||||||||||||||||||| ||
Sbjct: 4 agcaccgggtggatgccccatgtcgcggaactggggccagaactggcagtccaactcccg 63
Query: 581 atcctcgtcggccaggcgctctccttccgcgtcaccgccagcgaccgccgcacctccacc 640
||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct: 64 tccctcgtcggccaggcgctctcgttccgcgtcaccggcagcgaccgccgcacctccaca 123
Query: 641 tcctggaacgcc 652
||||||||||||
Sbjct: 124 tcctggaacgcc 135
>dbj|AK070463.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023048M24, full
insert sequence
Length = 1341
Score = 153 bits (77), Expect = 2e-034
Identities = 143/165 (86%)
Strand = Plus / Plus
Query: 245 gtcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggctgg 304
||||| ||||||||| | |||||||| ||||||||||||||| ||||||||||||||||
Sbjct: 395 gtcaccgccaccaacctgtgcccgccgaactacgcgctccccaacgacgacggcggctgg 454
Query: 305 tgcaacccgccccgcccgcacttcgacctcgccatgcccatgttcctccacatcgccgag 364
||||||||||| ||||| ||||||||| | ||| ||| |||||||| |||| || |
Sbjct: 455 tgcaacccgccgcgcccccacttcgacatggccgagccggccttcctccagatcggcgtg 514
Query: 365 taccgcgccggcatcgtgcccgtctcctaccgccgggtgccgtgc 409
|||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 515 taccgcgccggcatcgtgcccgtctcctacagaagggtgccgtgc 559
Score = 91.7 bits (46), Expect = 7e-016
Identities = 103/122 (84%)
Strand = Plus / Plus
Query: 513 tcaaggcggccagcaccgggtggctgcccatgtccaggaactggggccagaactggcagt 572
|||||| | ||||||||||||||| |||||||||| | |||||||||||||||||||||
Sbjct: 663 tcaaggggtccagcaccgggtggcagcccatgtcccgcaactggggccagaactggcaga 722
Query: 573 ccaacgccatcctcgtcggccaggcgctctccttccgcgtcaccgccagcgaccgccgca 632
|||| || ||||| ||||||| |||||||||| ||| ||| ||||||| ||||||
Sbjct: 723 gcaactcctacctcgacggccagagcctctccttccaggtcgccgtcagcgacggccgca 782
Query: 633 cc 634
||
Sbjct: 783 cc 784
Score = 61.9 bits (31), Expect = 6e-007
Identities = 107/131 (81%), Gaps = 1/131 (0%)
Strand = Plus / Plus
Query: 26 gcgcgcacgccacgttctacggcggcagcgacgcttttggctttatgggcggggcctgcg 85
|||| ||||||||||||||||||||| |||| || | ||| ||||||||||| || |
Sbjct: 189 gcgcccacgccacgttctacggcggcggcgatgcgtccggcacgatgggcggggcgtgtg 248
Query: 86 ggtacggcaacctgtgacagccaggggtacggcgtgaacaacgcggcgctgagcacggcg 145
|||| || ||||||| ||||| ||||||||| |||| |||||||||||||||| |
Sbjct: 249 ggtatgggaacctgt-acagcaccgggtacggcaccaacacggcggcgctgagcacggtg 307
Query: 146 ctgttcgacga 156
|||||| ||||
Sbjct: 308 ctgttcaacga 318
Score = 56.0 bits (28), Expect = 4e-005
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 664 ctggcagttcggccagaccttcgagggc 691
||||||||||||||||||||||||||||
Sbjct: 814 ctggcagttcggccagaccttcgagggc 841
>gb|U30477.1|OSU30477 Oryza sativa (japonica cultivar-group) expansin Os-EXPA2 (Os-EXPA2)
mRNA, complete cds
Length = 1323
Score = 153 bits (77), Expect = 2e-034
Identities = 143/165 (86%)
Strand = Plus / Plus
Query: 245 gtcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggctgg 304
||||| ||||||||| | |||||||| ||||||||||||||| ||||||||||||||||
Sbjct: 380 gtcaccgccaccaacctgtgcccgccgaactacgcgctccccaacgacgacggcggctgg 439
Query: 305 tgcaacccgccccgcccgcacttcgacctcgccatgcccatgttcctccacatcgccgag 364
||||||||||| ||||| ||||||||| | ||| ||| |||||||| |||| || |
Sbjct: 440 tgcaacccgccgcgcccccacttcgacatggccgagccggccttcctccagatcggcgtg 499
Query: 365 taccgcgccggcatcgtgcccgtctcctaccgccgggtgccgtgc 409
|||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 500 taccgcgccggcatcgtgcccgtctcctacagaagggtgccgtgc 544
Score = 91.7 bits (46), Expect = 7e-016
Identities = 103/122 (84%)
Strand = Plus / Plus
Query: 513 tcaaggcggccagcaccgggtggctgcccatgtccaggaactggggccagaactggcagt 572
|||||| | ||||||||||||||| |||||||||| | |||||||||||||||||||||
Sbjct: 648 tcaaggggtccagcaccgggtggcagcccatgtcccgcaactggggccagaactggcaga 707
Query: 573 ccaacgccatcctcgtcggccaggcgctctccttccgcgtcaccgccagcgaccgccgca 632
|||| || ||||| ||||||| |||||||||| ||| ||| ||||||| ||||||
Sbjct: 708 gcaactcctacctcgacggccagagcctctccttccaggtcgccgtcagcgacggccgca 767
Query: 633 cc 634
||
Sbjct: 768 cc 769
Score = 61.9 bits (31), Expect = 6e-007
Identities = 107/131 (81%), Gaps = 1/131 (0%)
Strand = Plus / Plus
Query: 26 gcgcgcacgccacgttctacggcggcagcgacgcttttggctttatgggcggggcctgcg 85
|||| ||||||||||||||||||||| |||| || | ||| ||||||||||| || |
Sbjct: 174 gcgcccacgccacgttctacggcggcggcgatgcgtccggcacgatgggcggggcgtgtg 233
Query: 86 ggtacggcaacctgtgacagccaggggtacggcgtgaacaacgcggcgctgagcacggcg 145
|||| || ||||||| ||||| ||||||||| |||| |||||||||||||||| |
Sbjct: 234 ggtatgggaacctgt-acagcaccgggtacggcaccaacacggcggcgctgagcacggtg 292
Query: 146 ctgttcgacga 156
|||||| ||||
Sbjct: 293 ctgttcaacga 303
Score = 50.1 bits (25), Expect = 0.002
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 664 ctggcagttcggccagaccttcgagggc 691
||||||||||| ||||||||||||||||
Sbjct: 799 ctggcagttcgnccagaccttcgagggc 826
>ref|NM_190380.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 756
Score = 153 bits (77), Expect = 2e-034
Identities = 143/165 (86%)
Strand = Plus / Plus
Query: 245 gtcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggctgg 304
||||| ||||||||| | |||||||| ||||||||||||||| ||||||||||||||||
Sbjct: 298 gtcaccgccaccaacctgtgcccgccgaactacgcgctccccaacgacgacggcggctgg 357
Query: 305 tgcaacccgccccgcccgcacttcgacctcgccatgcccatgttcctccacatcgccgag 364
||||||||||| ||||| ||||||||| | ||| ||| |||||||| |||| || |
Sbjct: 358 tgcaacccgccgcgcccccacttcgacatggccgagccggccttcctccagatcggcgtg 417
Query: 365 taccgcgccggcatcgtgcccgtctcctaccgccgggtgccgtgc 409
|||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 418 taccgcgccggcatcgtgcccgtctcctacagaagggtgccgtgc 462
Score = 91.7 bits (46), Expect = 7e-016
Identities = 103/122 (84%)
Strand = Plus / Plus
Query: 513 tcaaggcggccagcaccgggtggctgcccatgtccaggaactggggccagaactggcagt 572
|||||| | ||||||||||||||| |||||||||| | |||||||||||||||||||||
Sbjct: 566 tcaaggggtccagcaccgggtggcagcccatgtcccgcaactggggccagaactggcaga 625
Query: 573 ccaacgccatcctcgtcggccaggcgctctccttccgcgtcaccgccagcgaccgccgca 632
|||| || ||||| ||||||| |||||||||| ||| ||| ||||||| ||||||
Sbjct: 626 gcaactcctacctcgacggccagagcctctccttccaggtcgccgtcagcgacggccgca 685
Query: 633 cc 634
||
Sbjct: 686 cc 687
Score = 61.9 bits (31), Expect = 6e-007
Identities = 107/131 (81%), Gaps = 1/131 (0%)
Strand = Plus / Plus
Query: 26 gcgcgcacgccacgttctacggcggcagcgacgcttttggctttatgggcggggcctgcg 85
|||| ||||||||||||||||||||| |||| || | ||| ||||||||||| || |
Sbjct: 92 gcgcccacgccacgttctacggcggcggcgatgcgtccggcacgatgggcggggcgtgtg 151
Query: 86 ggtacggcaacctgtgacagccaggggtacggcgtgaacaacgcggcgctgagcacggcg 145
|||| || ||||||| ||||| ||||||||| |||| |||||||||||||||| |
Sbjct: 152 ggtatgggaacctgt-acagcaccgggtacggcaccaacacggcggcgctgagcacggtg 210
Query: 146 ctgttcgacga 156
|||||| ||||
Sbjct: 211 ctgttcaacga 221
Score = 56.0 bits (28), Expect = 4e-005
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 664 ctggcagttcggccagaccttcgagggc 691
||||||||||||||||||||||||||||
Sbjct: 717 ctggcagttcggccagaccttcgagggc 744
>gb|AACV01002595.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002595, whole
genome shotgun sequence
Length = 39811
Score = 147 bits (74), Expect = 1e-032
Identities = 131/150 (87%)
Strand = Plus / Minus
Query: 245 gtcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggctgg 304
||||| ||||||||| | |||||||| ||||||||||||||| ||||||||||||||||
Sbjct: 10320 gtcaccgccaccaacctgtgcccgccgaactacgcgctccccaacgacgacggcggctgg 10261
Query: 305 tgcaacccgccccgcccgcacttcgacctcgccatgcccatgttcctccacatcgccgag 364
||||||||||| ||||| ||||||||| | ||| ||| |||||||| |||| || |
Sbjct: 10260 tgcaacccgccgcgcccccacttcgacatggccgagccggccttcctccagatcggcgtg 10201
Query: 365 taccgcgccggcatcgtgcccgtctcctac 394
||||||||||||||||||||||||||||||
Sbjct: 10200 taccgcgccggcatcgtgcccgtctcctac 10171
Score = 91.7 bits (46), Expect = 7e-016
Identities = 103/122 (84%)
Strand = Plus / Minus
Query: 513 tcaaggcggccagcaccgggtggctgcccatgtccaggaactggggccagaactggcagt 572
|||||| | ||||||||||||||| |||||||||| | |||||||||||||||||||||
Sbjct: 9691 tcaaggggtccagcaccgggtggcagcccatgtcccgcaactggggccagaactggcaga 9632
Query: 573 ccaacgccatcctcgtcggccaggcgctctccttccgcgtcaccgccagcgaccgccgca 632
|||| || ||||| ||||||| |||||||||| ||| ||| ||||||| ||||||
Sbjct: 9631 gcaactcctacctcgacggccagagcctctccttccaggtcgccgtcagcgacggccgca 9572
Query: 633 cc 634
||
Sbjct: 9571 cc 9570
Score = 56.0 bits (28), Expect = 4e-005
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 664 ctggcagttcggccagaccttcgagggc 691
||||||||||||||||||||||||||||
Sbjct: 9540 ctggcagttcggccagaccttcgagggc 9513
Score = 46.1 bits (23), Expect = 0.038
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 26 gcgcgcacgccacgttctacggcggcagcga 56
|||| ||||||||||||||||||||| ||||
Sbjct: 10633 gcgcccacgccacgttctacggcggcggcga 10603
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 147 bits (74), Expect = 1e-032
Identities = 131/150 (87%)
Strand = Plus / Plus
Query: 245 gtcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggctgg 304
||||| ||||||||| | |||||||| ||||||||||||||| ||||||||||||||||
Sbjct: 35219945 gtcaccgccaccaacctgtgcccgccgaactacgcgctccccaacgacgacggcggctgg 35220004
Query: 305 tgcaacccgccccgcccgcacttcgacctcgccatgcccatgttcctccacatcgccgag 364
||||||||||| ||||| ||||||||| | ||| ||| |||||||| |||| || |
Sbjct: 35220005 tgcaacccgccgcgcccccacttcgacatggccgagccggccttcctccagatcggcgtg 35220064
Query: 365 taccgcgccggcatcgtgcccgtctcctac 394
||||||||||||||||||||||||||||||
Sbjct: 35220065 taccgcgccggcatcgtgcccgtctcctac 35220094
Score = 103 bits (52), Expect = 2e-019
Identities = 76/84 (90%)
Strand = Plus / Plus
Query: 248 acggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggctggtgc 307
|||||||||||| ||||||||||||||||||||||| || ||||| |||||| ||||||
Sbjct: 9523227 acggccaccaacctctgcccgcccaactacgcgctcgccggcgacgccggcgggtggtgc 9523286
Query: 308 aacccgccccgcccgcacttcgac 331
|||||||| || ||||||||||||
Sbjct: 9523287 aacccgccgcggccgcacttcgac 9523310
Score = 91.7 bits (46), Expect = 7e-016
Identities = 103/122 (84%)
Strand = Plus / Plus
Query: 513 tcaaggcggccagcaccgggtggctgcccatgtccaggaactggggccagaactggcagt 572
|||||| | ||||||||||||||| |||||||||| | |||||||||||||||||||||
Sbjct: 35220574 tcaaggggtccagcaccgggtggcagcccatgtcccgcaactggggccagaactggcaga 35220633
Query: 573 ccaacgccatcctcgtcggccaggcgctctccttccgcgtcaccgccagcgaccgccgca 632
|||| || ||||| ||||||| |||||||||| ||| ||| ||||||| ||||||
Sbjct: 35220634 gcaactcctacctcgacggccagagcctctccttccaggtcgccgtcagcgacggccgca 35220693
Query: 633 cc 634
||
Sbjct: 35220694 cc 35220695
Score = 83.8 bits (42), Expect = 2e-013
Identities = 130/158 (82%), Gaps = 1/158 (0%)
Strand = Plus / Plus
Query: 37 acgttctacggcggcagcgacgcttttggctttatgggcggggcctgcgggtacggcaac 96
||||||||||||||||||||||| | || ||||| || || |||||||||||||||
Sbjct: 9523032 acgttctacggcggcagcgacgcgtcggggacgatgggtggcgcgtgcgggtacggcaac 9523091
Query: 97 ctgtgacagccaggggtacggcgtgaacaacgcggcgctgagcacggcgctgttcgacga 156
|||| ||||| |||||||| || || |||||||||||||||||||||||| || |
Sbjct: 9523092 ctgt-acagcgccgggtacgggacgagcacggcggcgctgagcacggcgctgttcaacaa 9523150
Query: 157 ggggctccgctgcggcgcgtgcttcgagatcaggtgcg 194
|||| |||||||||||||||||||| || ||||||
Sbjct: 9523151 cgggcagagctgcggcgcgtgcttcgaggtccggtgcg 9523188
Score = 69.9 bits (35), Expect = 3e-009
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 577 cgccatcctcgtcggccaggcgctctccttccgcgtcaccgccagcgaccgccgcacctc 636
||||| ||||| ||||||| ||||||||||| | ||||||||||||||| ||||||||
Sbjct: 9523556 cgccaacctcgacggccagccgctctccttcagggtcaccgccagcgacggccgcaccgt 9523615
Query: 637 cacctcc 643
|||||||
Sbjct: 9523616 cacctcc 9523622
Score = 63.9 bits (32), Expect = 2e-007
Identities = 71/84 (84%)
Strand = Plus / Minus
Query: 248 acggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggctggtgc 307
||||| |||||||||||||| || |||||||| || || ||||| |||||| ||||||
Sbjct: 8193454 acggcgaccaacttctgccctccaaactacgccctgtccggcgacgccggcgggtggtgc 8193395
Query: 308 aacccgccccgcccgcacttcgac 331
|||||||| |||| |||||||||
Sbjct: 8193394 aacccgccgcgccgccacttcgac 8193371
Score = 56.0 bits (28), Expect = 4e-005
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 664 ctggcagttcggccagaccttcgagggc 691
||||||||||||||||||||||||||||
Sbjct: 35220725 ctggcagttcggccagaccttcgagggc 35220752
Score = 54.0 bits (27), Expect = 2e-004
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 33 cgccacgttctacggcggcagcgacgc 59
|||||||||||||||||||||||||||
Sbjct: 8199474 cgccacgttctacggcggcagcgacgc 8199448
Score = 54.0 bits (27), Expect = 2e-004
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 364 gtaccgcgccggcatcgtgcccgtctcctaccgccgggtgccgtgcc 410
|||||||||||| ||||||||||| ||||||||| ||||||||||
Sbjct: 8193338 gtaccgcgccgggatcgtgcccgtgaactaccgccgcgtgccgtgcc 8193292
Score = 48.1 bits (24), Expect = 0.010
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 128 gcggcgctgagcacggcgctgttc 151
||||||||||||||||||||||||
Sbjct: 8193568 gcggcgctgagcacggcgctgttc 8193545
Score = 46.1 bits (23), Expect = 0.038
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 26 gcgcgcacgccacgttctacggcggcagcga 56
|||| ||||||||||||||||||||| ||||
Sbjct: 35219632 gcgcccacgccacgttctacggcggcggcga 35219662
Score = 46.1 bits (23), Expect = 0.038
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 37 acgttctacggcggcagcgacgc 59
|||||||||||||||||||||||
Sbjct: 8193779 acgttctacggcggcagcgacgc 8193757
Score = 44.1 bits (22), Expect = 0.15
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 248 acggccaccaacttctgcccgcccaactac 277
||||| ||||||| ||||||||||||||||
Sbjct: 8199168 acggcgaccaactactgcccgcccaactac 8199139
>ref|NT_079927.2| Oryza sativa (japonica cultivar-group)
Length = 14818989
Score = 147 bits (74), Expect = 1e-032
Identities = 131/150 (87%)
Strand = Plus / Plus
Query: 245 gtcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggctgg 304
||||| ||||||||| | |||||||| ||||||||||||||| ||||||||||||||||
Sbjct: 9667328 gtcaccgccaccaacctgtgcccgccgaactacgcgctccccaacgacgacggcggctgg 9667387
Query: 305 tgcaacccgccccgcccgcacttcgacctcgccatgcccatgttcctccacatcgccgag 364
||||||||||| ||||| ||||||||| | ||| ||| |||||||| |||| || |
Sbjct: 9667388 tgcaacccgccgcgcccccacttcgacatggccgagccggccttcctccagatcggcgtg 9667447
Query: 365 taccgcgccggcatcgtgcccgtctcctac 394
||||||||||||||||||||||||||||||
Sbjct: 9667448 taccgcgccggcatcgtgcccgtctcctac 9667477
Score = 91.7 bits (46), Expect = 7e-016
Identities = 103/122 (84%)
Strand = Plus / Plus
Query: 513 tcaaggcggccagcaccgggtggctgcccatgtccaggaactggggccagaactggcagt 572
|||||| | ||||||||||||||| |||||||||| | |||||||||||||||||||||
Sbjct: 9667957 tcaaggggtccagcaccgggtggcagcccatgtcccgcaactggggccagaactggcaga 9668016
Query: 573 ccaacgccatcctcgtcggccaggcgctctccttccgcgtcaccgccagcgaccgccgca 632
|||| || ||||| ||||||| |||||||||| ||| ||| ||||||| ||||||
Sbjct: 9668017 gcaactcctacctcgacggccagagcctctccttccaggtcgccgtcagcgacggccgca 9668076
Query: 633 cc 634
||
Sbjct: 9668077 cc 9668078
Score = 56.0 bits (28), Expect = 4e-005
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 664 ctggcagttcggccagaccttcgagggc 691
||||||||||||||||||||||||||||
Sbjct: 9668108 ctggcagttcggccagaccttcgagggc 9668135
Score = 46.1 bits (23), Expect = 0.038
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 26 gcgcgcacgccacgttctacggcggcagcga 56
|||| ||||||||||||||||||||| ||||
Sbjct: 9667015 gcgcccacgccacgttctacggcggcggcga 9667045
>dbj|AP003348.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0485B12
Length = 156047
Score = 147 bits (74), Expect = 1e-032
Identities = 131/150 (87%)
Strand = Plus / Plus
Query: 245 gtcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggctgg 304
||||| ||||||||| | |||||||| ||||||||||||||| ||||||||||||||||
Sbjct: 146425 gtcaccgccaccaacctgtgcccgccgaactacgcgctccccaacgacgacggcggctgg 146484
Query: 305 tgcaacccgccccgcccgcacttcgacctcgccatgcccatgttcctccacatcgccgag 364
||||||||||| ||||| ||||||||| | ||| ||| |||||||| |||| || |
Sbjct: 146485 tgcaacccgccgcgcccccacttcgacatggccgagccggccttcctccagatcggcgtg 146544
Query: 365 taccgcgccggcatcgtgcccgtctcctac 394
||||||||||||||||||||||||||||||
Sbjct: 146545 taccgcgccggcatcgtgcccgtctcctac 146574
Score = 91.7 bits (46), Expect = 7e-016
Identities = 103/122 (84%)
Strand = Plus / Plus
Query: 513 tcaaggcggccagcaccgggtggctgcccatgtccaggaactggggccagaactggcagt 572
|||||| | ||||||||||||||| |||||||||| | |||||||||||||||||||||
Sbjct: 147054 tcaaggggtccagcaccgggtggcagcccatgtcccgcaactggggccagaactggcaga 147113
Query: 573 ccaacgccatcctcgtcggccaggcgctctccttccgcgtcaccgccagcgaccgccgca 632
|||| || ||||| ||||||| |||||||||| ||| ||| ||||||| ||||||
Sbjct: 147114 gcaactcctacctcgacggccagagcctctccttccaggtcgccgtcagcgacggccgca 147173
Query: 633 cc 634
||
Sbjct: 147174 cc 147175
Score = 56.0 bits (28), Expect = 4e-005
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 664 ctggcagttcggccagaccttcgagggc 691
||||||||||||||||||||||||||||
Sbjct: 147205 ctggcagttcggccagaccttcgagggc 147232
Score = 46.1 bits (23), Expect = 0.038
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 26 gcgcgcacgccacgttctacggcggcagcga 56
|||| ||||||||||||||||||||| ||||
Sbjct: 146112 gcgcccacgccacgttctacggcggcggcga 146142
>dbj|AP003230.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0031D02
Length = 183692
Score = 147 bits (74), Expect = 1e-032
Identities = 131/150 (87%)
Strand = Plus / Plus
Query: 245 gtcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggctgg 304
||||| ||||||||| | |||||||| ||||||||||||||| ||||||||||||||||
Sbjct: 18359 gtcaccgccaccaacctgtgcccgccgaactacgcgctccccaacgacgacggcggctgg 18418
Query: 305 tgcaacccgccccgcccgcacttcgacctcgccatgcccatgttcctccacatcgccgag 364
||||||||||| ||||| ||||||||| | ||| ||| |||||||| |||| || |
Sbjct: 18419 tgcaacccgccgcgcccccacttcgacatggccgagccggccttcctccagatcggcgtg 18478
Query: 365 taccgcgccggcatcgtgcccgtctcctac 394
||||||||||||||||||||||||||||||
Sbjct: 18479 taccgcgccggcatcgtgcccgtctcctac 18508
Score = 91.7 bits (46), Expect = 7e-016
Identities = 103/122 (84%)
Strand = Plus / Plus
Query: 513 tcaaggcggccagcaccgggtggctgcccatgtccaggaactggggccagaactggcagt 572
|||||| | ||||||||||||||| |||||||||| | |||||||||||||||||||||
Sbjct: 18988 tcaaggggtccagcaccgggtggcagcccatgtcccgcaactggggccagaactggcaga 19047
Query: 573 ccaacgccatcctcgtcggccaggcgctctccttccgcgtcaccgccagcgaccgccgca 632
|||| || ||||| ||||||| |||||||||| ||| ||| ||||||| ||||||
Sbjct: 19048 gcaactcctacctcgacggccagagcctctccttccaggtcgccgtcagcgacggccgca 19107
Query: 633 cc 634
||
Sbjct: 19108 cc 19109
Score = 56.0 bits (28), Expect = 4e-005
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 664 ctggcagttcggccagaccttcgagggc 691
||||||||||||||||||||||||||||
Sbjct: 19139 ctggcagttcggccagaccttcgagggc 19166
Score = 46.1 bits (23), Expect = 0.038
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 26 gcgcgcacgccacgttctacggcggcagcga 56
|||| ||||||||||||||||||||| ||||
Sbjct: 18046 gcgcccacgccacgttctacggcggcggcga 18076
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 147 bits (74), Expect = 1e-032
Identities = 131/150 (87%)
Strand = Plus / Plus
Query: 245 gtcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggctgg 304
||||| ||||||||| | |||||||| ||||||||||||||| ||||||||||||||||
Sbjct: 9435374 gtcaccgccaccaacctgtgcccgccgaactacgcgctccccaacgacgacggcggctgg 9435433
Query: 305 tgcaacccgccccgcccgcacttcgacctcgccatgcccatgttcctccacatcgccgag 364
||||||||||| ||||| ||||||||| | ||| ||| |||||||| |||| || |
Sbjct: 9435434 tgcaacccgccgcgcccccacttcgacatggccgagccggccttcctccagatcggcgtg 9435493
Query: 365 taccgcgccggcatcgtgcccgtctcctac 394
||||||||||||||||||||||||||||||
Sbjct: 9435494 taccgcgccggcatcgtgcccgtctcctac 9435523
Score = 91.7 bits (46), Expect = 7e-016
Identities = 103/122 (84%)
Strand = Plus / Plus
Query: 513 tcaaggcggccagcaccgggtggctgcccatgtccaggaactggggccagaactggcagt 572
|||||| | ||||||||||||||| |||||||||| | |||||||||||||||||||||
Sbjct: 9436003 tcaaggggtccagcaccgggtggcagcccatgtcccgcaactggggccagaactggcaga 9436062
Query: 573 ccaacgccatcctcgtcggccaggcgctctccttccgcgtcaccgccagcgaccgccgca 632
|||| || ||||| ||||||| |||||||||| ||| ||| ||||||| ||||||
Sbjct: 9436063 gcaactcctacctcgacggccagagcctctccttccaggtcgccgtcagcgacggccgca 9436122
Query: 633 cc 634
||
Sbjct: 9436123 cc 9436124
Score = 56.0 bits (28), Expect = 4e-005
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 664 ctggcagttcggccagaccttcgagggc 691
||||||||||||||||||||||||||||
Sbjct: 9436154 ctggcagttcggccagaccttcgagggc 9436181
Score = 46.1 bits (23), Expect = 0.038
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 26 gcgcgcacgccacgttctacggcggcagcga 56
|||| ||||||||||||||||||||| ||||
Sbjct: 9435061 gcgcccacgccacgttctacggcggcggcga 9435091
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 147 bits (74), Expect = 1e-032
Identities = 131/150 (87%)
Strand = Plus / Plus
Query: 245 gtcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggctgg 304
||||| ||||||||| | |||||||| ||||||||||||||| ||||||||||||||||
Sbjct: 34637095 gtcaccgccaccaacctgtgcccgccgaactacgcgctccccaacgacgacggcggctgg 34637154
Query: 305 tgcaacccgccccgcccgcacttcgacctcgccatgcccatgttcctccacatcgccgag 364
||||||||||| ||||| ||||||||| | ||| ||| |||||||| |||| || |
Sbjct: 34637155 tgcaacccgccgcgcccccacttcgacatggccgagccggccttcctccagatcggcgtg 34637214
Query: 365 taccgcgccggcatcgtgcccgtctcctac 394
||||||||||||||||||||||||||||||
Sbjct: 34637215 taccgcgccggcatcgtgcccgtctcctac 34637244
Score = 91.7 bits (46), Expect = 7e-016
Identities = 103/122 (84%)
Strand = Plus / Plus
Query: 513 tcaaggcggccagcaccgggtggctgcccatgtccaggaactggggccagaactggcagt 572
|||||| | ||||||||||||||| |||||||||| | |||||||||||||||||||||
Sbjct: 34637724 tcaaggggtccagcaccgggtggcagcccatgtcccgcaactggggccagaactggcaga 34637783
Query: 573 ccaacgccatcctcgtcggccaggcgctctccttccgcgtcaccgccagcgaccgccgca 632
|||| || ||||| ||||||| |||||||||| ||| ||| ||||||| ||||||
Sbjct: 34637784 gcaactcctacctcgacggccagagcctctccttccaggtcgccgtcagcgacggccgca 34637843
Query: 633 cc 634
||
Sbjct: 34637844 cc 34637845
Score = 89.7 bits (45), Expect = 3e-015
Identities = 76/85 (89%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 248 acggccaccaacttctgccc-gcccaactacgcgctcccctccgacgacggcggctggtg 306
|||||||||||| ||||||| |||||||||||||||| || ||||| |||||| |||||
Sbjct: 9572940 acggccaccaacctctgccccgcccaactacgcgctcgccggcgacgccggcgggtggtg 9572999
Query: 307 caacccgccccgcccgcacttcgac 331
||||||||| || ||||||||||||
Sbjct: 9573000 caacccgccgcggccgcacttcgac 9573024
Score = 83.8 bits (42), Expect = 2e-013
Identities = 130/158 (82%), Gaps = 1/158 (0%)
Strand = Plus / Plus
Query: 37 acgttctacggcggcagcgacgcttttggctttatgggcggggcctgcgggtacggcaac 96
||||||||||||||||||||||| | || ||||| || || |||||||||||||||
Sbjct: 9572745 acgttctacggcggcagcgacgcgtcggggacgatgggtggcgcgtgcgggtacggcaac 9572804
Query: 97 ctgtgacagccaggggtacggcgtgaacaacgcggcgctgagcacggcgctgttcgacga 156
|||| ||||| |||||||| || || |||||||||||||||||||||||| || |
Sbjct: 9572805 ctgt-acagcgccgggtacgggacgagcacggcggcgctgagcacggcgctgttcaacaa 9572863
Query: 157 ggggctccgctgcggcgcgtgcttcgagatcaggtgcg 194
|||| |||||||||||||||||||| || ||||||
Sbjct: 9572864 cgggcagagctgcggcgcgtgcttcgaggtccggtgcg 9572901
Score = 69.9 bits (35), Expect = 3e-009
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 577 cgccatcctcgtcggccaggcgctctccttccgcgtcaccgccagcgaccgccgcacctc 636
||||| ||||| ||||||| ||||||||||| | ||||||||||||||| ||||||||
Sbjct: 9573270 cgccaacctcgacggccagccgctctccttcagggtcaccgccagcgacggccgcaccgt 9573329
Query: 637 cacctcc 643
|||||||
Sbjct: 9573330 cacctcc 9573336
Score = 63.9 bits (32), Expect = 2e-007
Identities = 71/84 (84%)
Strand = Plus / Minus
Query: 248 acggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggctggtgc 307
||||| |||||||||||||| || |||||||| || || ||||| |||||| ||||||
Sbjct: 8243995 acggcgaccaacttctgccctccaaactacgccctgtccggcgacgccggcgggtggtgc 8243936
Query: 308 aacccgccccgcccgcacttcgac 331
|||||||| |||| |||||||||
Sbjct: 8243935 aacccgccgcgccgccacttcgac 8243912
Score = 56.0 bits (28), Expect = 4e-005
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 664 ctggcagttcggccagaccttcgagggc 691
||||||||||||||||||||||||||||
Sbjct: 34637875 ctggcagttcggccagaccttcgagggc 34637902
Score = 54.0 bits (27), Expect = 2e-004
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 33 cgccacgttctacggcggcagcgacgc 59
|||||||||||||||||||||||||||
Sbjct: 8250019 cgccacgttctacggcggcagcgacgc 8249993
Score = 54.0 bits (27), Expect = 2e-004
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 364 gtaccgcgccggcatcgtgcccgtctcctaccgccgggtgccgtgcc 410
|||||||||||| ||||||||||| ||||||||| ||||||||||
Sbjct: 8243879 gtaccgcgccgggatcgtgcccgtgaactaccgccgcgtgccgtgcc 8243833
Score = 48.1 bits (24), Expect = 0.010
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 128 gcggcgctgagcacggcgctgttc 151
||||||||||||||||||||||||
Sbjct: 8244109 gcggcgctgagcacggcgctgttc 8244086
Score = 46.1 bits (23), Expect = 0.038
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 26 gcgcgcacgccacgttctacggcggcagcga 56
|||| ||||||||||||||||||||| ||||
Sbjct: 34636782 gcgcccacgccacgttctacggcggcggcga 34636812
Score = 46.1 bits (23), Expect = 0.038
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 37 acgttctacggcggcagcgacgc 59
|||||||||||||||||||||||
Sbjct: 8244320 acgttctacggcggcagcgacgc 8244298
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 147 bits (74), Expect = 1e-032
Identities = 131/150 (87%)
Strand = Plus / Plus
Query: 245 gtcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggctgg 304
||||| ||||||||| | |||||||| ||||||||||||||| ||||||||||||||||
Sbjct: 35139275 gtcaccgccaccaacctgtgcccgccgaactacgcgctccccaacgacgacggcggctgg 35139334
Query: 305 tgcaacccgccccgcccgcacttcgacctcgccatgcccatgttcctccacatcgccgag 364
||||||||||| ||||| ||||||||| | ||| ||| |||||||| |||| || |
Sbjct: 35139335 tgcaacccgccgcgcccccacttcgacatggccgagccggccttcctccagatcggcgtg 35139394
Query: 365 taccgcgccggcatcgtgcccgtctcctac 394
||||||||||||||||||||||||||||||
Sbjct: 35139395 taccgcgccggcatcgtgcccgtctcctac 35139424
Score = 103 bits (52), Expect = 2e-019
Identities = 76/84 (90%)
Strand = Plus / Plus
Query: 248 acggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggctggtgc 307
|||||||||||| ||||||||||||||||||||||| || ||||| |||||| ||||||
Sbjct: 9525445 acggccaccaacctctgcccgcccaactacgcgctcgccggcgacgccggcgggtggtgc 9525504
Query: 308 aacccgccccgcccgcacttcgac 331
|||||||| || ||||||||||||
Sbjct: 9525505 aacccgccgcggccgcacttcgac 9525528
Score = 91.7 bits (46), Expect = 7e-016
Identities = 103/122 (84%)
Strand = Plus / Plus
Query: 513 tcaaggcggccagcaccgggtggctgcccatgtccaggaactggggccagaactggcagt 572
|||||| | ||||||||||||||| |||||||||| | |||||||||||||||||||||
Sbjct: 35139904 tcaaggggtccagcaccgggtggcagcccatgtcccgcaactggggccagaactggcaga 35139963
Query: 573 ccaacgccatcctcgtcggccaggcgctctccttccgcgtcaccgccagcgaccgccgca 632
|||| || ||||| ||||||| |||||||||| ||| ||| ||||||| ||||||
Sbjct: 35139964 gcaactcctacctcgacggccagagcctctccttccaggtcgccgtcagcgacggccgca 35140023
Query: 633 cc 634
||
Sbjct: 35140024 cc 35140025
Score = 83.8 bits (42), Expect = 2e-013
Identities = 130/158 (82%), Gaps = 1/158 (0%)
Strand = Plus / Plus
Query: 37 acgttctacggcggcagcgacgcttttggctttatgggcggggcctgcgggtacggcaac 96
||||||||||||||||||||||| | || ||||| || || |||||||||||||||
Sbjct: 9525250 acgttctacggcggcagcgacgcgtcggggacgatgggtggcgcgtgcgggtacggcaac 9525309
Query: 97 ctgtgacagccaggggtacggcgtgaacaacgcggcgctgagcacggcgctgttcgacga 156
|||| ||||| |||||||| || || |||||||||||||||||||||||| || |
Sbjct: 9525310 ctgt-acagcgccgggtacgggacgagcacggcggcgctgagcacggcgctgttcaacaa 9525368
Query: 157 ggggctccgctgcggcgcgtgcttcgagatcaggtgcg 194
|||| |||||||||||||||||||| || ||||||
Sbjct: 9525369 cgggcagagctgcggcgcgtgcttcgaggtccggtgcg 9525406
Score = 69.9 bits (35), Expect = 3e-009
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 577 cgccatcctcgtcggccaggcgctctccttccgcgtcaccgccagcgaccgccgcacctc 636
||||| ||||| ||||||| ||||||||||| | ||||||||||||||| ||||||||
Sbjct: 9525774 cgccaacctcgacggccagccgctctccttcagggtcaccgccagcgacggccgcaccgt 9525833
Query: 637 cacctcc 643
|||||||
Sbjct: 9525834 cacctcc 9525840
Score = 63.9 bits (32), Expect = 2e-007
Identities = 71/84 (84%)
Strand = Plus / Minus
Query: 248 acggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggctggtgc 307
||||| |||||||||||||| || |||||||| || || ||||| |||||| ||||||
Sbjct: 8195672 acggcgaccaacttctgccctccaaactacgccctgtccggcgacgccggcgggtggtgc 8195613
Query: 308 aacccgccccgcccgcacttcgac 331
|||||||| |||| |||||||||
Sbjct: 8195612 aacccgccgcgccgccacttcgac 8195589
Score = 56.0 bits (28), Expect = 4e-005
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 664 ctggcagttcggccagaccttcgagggc 691
||||||||||||||||||||||||||||
Sbjct: 35140055 ctggcagttcggccagaccttcgagggc 35140082
Score = 54.0 bits (27), Expect = 2e-004
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 33 cgccacgttctacggcggcagcgacgc 59
|||||||||||||||||||||||||||
Sbjct: 8201692 cgccacgttctacggcggcagcgacgc 8201666
Score = 54.0 bits (27), Expect = 2e-004
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 364 gtaccgcgccggcatcgtgcccgtctcctaccgccgggtgccgtgcc 410
|||||||||||| ||||||||||| ||||||||| ||||||||||
Sbjct: 8195556 gtaccgcgccgggatcgtgcccgtgaactaccgccgcgtgccgtgcc 8195510
Score = 48.1 bits (24), Expect = 0.010
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 128 gcggcgctgagcacggcgctgttc 151
||||||||||||||||||||||||
Sbjct: 8195786 gcggcgctgagcacggcgctgttc 8195763
Score = 46.1 bits (23), Expect = 0.038
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 26 gcgcgcacgccacgttctacggcggcagcga 56
|||| ||||||||||||||||||||| ||||
Sbjct: 35138962 gcgcccacgccacgttctacggcggcggcga 35138992
Score = 46.1 bits (23), Expect = 0.038
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 37 acgttctacggcggcagcgacgc 59
|||||||||||||||||||||||
Sbjct: 8195997 acgttctacggcggcagcgacgc 8195975
Score = 44.1 bits (22), Expect = 0.15
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 248 acggccaccaacttctgcccgcccaactac 277
||||| ||||||| ||||||||||||||||
Sbjct: 8201386 acggcgaccaactactgcccgcccaactac 8201357
>gb|C91662.1|C91662 C91662 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E31204_1A, mRNA sequence
Length = 358
Score = 139 bits (70), Expect = 3e-030
Identities = 145/169 (85%), Gaps = 1/169 (0%)
Strand = Plus / Plus
Query: 26 gcgcgcacgccacgttctacggcggcagcgacgcttttggctttatgggcggggcctgcg 85
|||||||||| ||||||||||| |||||| |||| | || ||||||||||| ||||
Sbjct: 139 gcgcgcacgcaacgttctacgggggcagcnacgcgtcagggacgatgggcggggcgtgcg 198
Query: 86 ggtacggcaacctgtgacagccaggggtacggcgtgaacaacgcggcgctgagcacggcg 145
||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 199 ggtacgggaacctgt-acagccaggggtacggggtgaacaacgcggcgctgagcacggcg 257
Query: 146 ctgttcgacgaggggctccgctgcggcgcgtgcttcgagatcaggtgcg 194
|||||| || |||| ||||||||||||||| ||||||| |||||
Sbjct: 258 ctgttcaactccgggcaaaactgcggcgcgtgctttgagatcaagtgcg 306
>dbj|AK070133.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023046O16, full
insert sequence
Length = 1071
Score = 135 bits (68), Expect = 5e-029
Identities = 80/84 (95%)
Strand = Plus / Plus
Query: 248 acggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggctggtgc 307
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 400 acggccaccaacttctgcccgcccaactacgcgctccccagcgacgacggcggctggtgc 459
Query: 308 aacccgccccgcccgcacttcgac 331
|||||||| || ||||||||||||
Sbjct: 460 aacccgccgcggccgcacttcgac 483
Score = 71.9 bits (36), Expect = 7e-010
Identities = 103/124 (83%), Gaps = 1/124 (0%)
Strand = Plus / Plus
Query: 33 cgccacgttctacggcggcagcgacgcttttggctttatgggcggggcctgcgggtacgg 92
|||||| |||||||||||||||||||| | ||| |||||||| || |||||||||||
Sbjct: 189 cgccaccttctacggcggcagcgacgcctccggcaccatgggcggtgcgtgcgggtacgg 248
Query: 93 caacctgtgacagccaggggtacggcgtgaacaacgcggcgctgagcacggcgctgttcg 152
|||||||| ||| || |||||||| | | |||||||||||||||||||||||||
Sbjct: 249 caacctgt-acacgcaagggtacgggacgcggacggcggcgctgagcacggcgctgttcg 307
Query: 153 acga 156
||||
Sbjct: 308 acga 311
>gb|AC091774.7| Oryza sativa chromosome 6 BAC OJ1540_H01 genomic sequence, complete
sequence
Length = 143507
Score = 135 bits (68), Expect = 5e-029
Identities = 80/84 (95%)
Strand = Plus / Plus
Query: 248 acggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggctggtgc 307
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 85470 acggccaccaacttctgcccgcccaactacgcgctccccagcgacgacggcggctggtgc 85529
Query: 308 aacccgccccgcccgcacttcgac 331
|||||||| || ||||||||||||
Sbjct: 85530 aacccgccgcggccgcacttcgac 85553
Score = 58.0 bits (29), Expect = 1e-005
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 128 gcggcgctgagcacggcgctgttcgacga 156
|||||||||||||||||||||||||||||
Sbjct: 85353 gcggcgctgagcacggcgctgttcgacga 85381
Score = 46.1 bits (23), Expect = 0.038
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 33 cgccacgttctacggcggcagcgacgc 59
|||||| ||||||||||||||||||||
Sbjct: 85174 cgccaccttctacggcggcagcgacgc 85200
>dbj|AP003769.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0541C02
Length = 150660
Score = 135 bits (68), Expect = 5e-029
Identities = 80/84 (95%)
Strand = Plus / Plus
Query: 248 acggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggctggtgc 307
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 80921 acggccaccaacttctgcccgcccaactacgcgctccccagcgacgacggcggctggtgc 80980
Query: 308 aacccgccccgcccgcacttcgac 331
|||||||| || ||||||||||||
Sbjct: 80981 aacccgccgcggccgcacttcgac 81004
Score = 58.0 bits (29), Expect = 1e-005
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 128 gcggcgctgagcacggcgctgttcgacga 156
|||||||||||||||||||||||||||||
Sbjct: 80804 gcggcgctgagcacggcgctgttcgacga 80832
Score = 46.1 bits (23), Expect = 0.038
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 33 cgccacgttctacggcggcagcgacgc 59
|||||| ||||||||||||||||||||
Sbjct: 80625 cgccaccttctacggcggcagcgacgc 80651
>gb|AACV01014938.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014938, whole
genome shotgun sequence
Length = 1590
Score = 135 bits (68), Expect = 5e-029
Identities = 80/84 (95%)
Strand = Plus / Minus
Query: 248 acggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggctggtgc 307
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1451 acggccaccaacttctgcccgcccaactacgcgctccccagcgacgacggcggctggtgc 1392
Query: 308 aacccgccccgcccgcacttcgac 331
|||||||| || ||||||||||||
Sbjct: 1391 aacccgccgcggccgcacttcgac 1368
Score = 58.0 bits (29), Expect = 1e-005
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 128 gcggcgctgagcacggcgctgttcgacga 156
|||||||||||||||||||||||||||||
Sbjct: 1568 gcggcgctgagcacggcgctgttcgacga 1540
>gb|CH401216.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000053 genomic
scaffold, whole genome shotgun sequence
Length = 12033173
Score = 135 bits (68), Expect = 5e-029
Identities = 80/84 (95%)
Strand = Plus / Plus
Query: 248 acggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggctggtgc 307
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 11459778 acggccaccaacttctgcccgcccaactacgcgctccccagcgacgacggcggctggtgc 11459837
Query: 308 aacccgccccgcccgcacttcgac 331
|||||||| || ||||||||||||
Sbjct: 11459838 aacccgccgcggccgcacttcgac 11459861
Score = 58.0 bits (29), Expect = 1e-005
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 128 gcggcgctgagcacggcgctgttcgacga 156
|||||||||||||||||||||||||||||
Sbjct: 11459661 gcggcgctgagcacggcgctgttcgacga 11459689
Score = 50.1 bits (25), Expect = 0.002
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 548 aggaactggggccagaactggcagt 572
|||||||||||||||||||||||||
Sbjct: 5970931 aggaactggggccagaactggcagt 5970955
Score = 48.1 bits (24), Expect = 0.010
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 243 tggtcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggct 302
|||| ||||||||| |||||||| |||||||| || ||| || |||| |||||||||
Sbjct: 5968662 tggtgacggccaccgacttctgcgcgcccaacctcggactctccgacgactacggcggct 5968721
Query: 303 ggtgcaac 310
||||||||
Sbjct: 5968722 ggtgcaac 5968729
Score = 46.1 bits (23), Expect = 0.038
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 33 cgccacgttctacggcggcagcgacgc 59
|||||| ||||||||||||||||||||
Sbjct: 11459462 cgccaccttctacggcggcagcgacgc 11459488
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 135 bits (68), Expect = 5e-029
Identities = 80/84 (95%)
Strand = Plus / Plus
Query: 248 acggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggctggtgc 307
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 29158515 acggccaccaacttctgcccgcccaactacgcgctccccagcgacgacggcggctggtgc 29158574
Query: 308 aacccgccccgcccgcacttcgac 331
|||||||| || ||||||||||||
Sbjct: 29158575 aacccgccgcggccgcacttcgac 29158598
Score = 58.0 bits (29), Expect = 1e-005
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 128 gcggcgctgagcacggcgctgttcgacga 156
|||||||||||||||||||||||||||||
Sbjct: 29158398 gcggcgctgagcacggcgctgttcgacga 29158426
Score = 50.1 bits (25), Expect = 0.002
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 548 aggaactggggccagaactggcagt 572
|||||||||||||||||||||||||
Sbjct: 23669668 aggaactggggccagaactggcagt 23669692
Score = 48.1 bits (24), Expect = 0.010
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 243 tggtcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggct 302
|||| ||||||||| |||||||| |||||||| || ||| || |||| |||||||||
Sbjct: 23667399 tggtgacggccaccgacttctgcgcgcccaacctcggactctccgacgactacggcggct 23667458
Query: 303 ggtgcaac 310
||||||||
Sbjct: 23667459 ggtgcaac 23667466
Score = 46.1 bits (23), Expect = 0.038
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 33 cgccacgttctacggcggcagcgacgc 59
|||||| ||||||||||||||||||||
Sbjct: 29158199 cgccaccttctacggcggcagcgacgc 29158225
>gb|DQ061068.1| Oryza sativa (japonica cultivar-group) alpha-expansin 29 (EXPA29)
mRNA, partial cds
Length = 708
Score = 135 bits (68), Expect = 5e-029
Identities = 80/84 (95%)
Strand = Plus / Plus
Query: 248 acggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggctggtgc 307
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 254 acggccaccaacttctgcccgcccaactacgcgctccccagcgacgacggcggctggtgc 313
Query: 308 aacccgccccgcccgcacttcgac 331
|||||||| || ||||||||||||
Sbjct: 314 aacccgccgcggccgcacttcgac 337
Score = 71.9 bits (36), Expect = 7e-010
Identities = 103/124 (83%), Gaps = 1/124 (0%)
Strand = Plus / Plus
Query: 33 cgccacgttctacggcggcagcgacgcttttggctttatgggcggggcctgcgggtacgg 92
|||||| |||||||||||||||||||| | ||| |||||||| || |||||||||||
Sbjct: 43 cgccaccttctacggcggcagcgacgcctccggcaccatgggcggtgcgtgcgggtacgg 102
Query: 93 caacctgtgacagccaggggtacggcgtgaacaacgcggcgctgagcacggcgctgttcg 152
|||||||| ||| || |||||||| | | |||||||||||||||||||||||||
Sbjct: 103 caacctgt-acacgcaagggtacgggacgcggacggcggcgctgagcacggcgctgttcg 161
Query: 153 acga 156
||||
Sbjct: 162 acga 165
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 135 bits (68), Expect = 5e-029
Identities = 80/84 (95%)
Strand = Plus / Plus
Query: 248 acggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggctggtgc 307
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 30004773 acggccaccaacttctgcccgcccaactacgcgctccccagcgacgacggcggctggtgc 30004832
Query: 308 aacccgccccgcccgcacttcgac 331
|||||||| || ||||||||||||
Sbjct: 30004833 aacccgccgcggccgcacttcgac 30004856
Score = 58.0 bits (29), Expect = 1e-005
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 128 gcggcgctgagcacggcgctgttcgacga 156
|||||||||||||||||||||||||||||
Sbjct: 30004656 gcggcgctgagcacggcgctgttcgacga 30004684
Score = 54.0 bits (27), Expect = 2e-004
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 289 cgacgacggcggctggtgcaacccgcc 315
|||||||||||||||||||||||||||
Sbjct: 511291 cgacgacggcggctggtgcaacccgcc 511265
Score = 50.1 bits (25), Expect = 0.002
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 548 aggaactggggccagaactggcagt 572
|||||||||||||||||||||||||
Sbjct: 24602647 aggaactggggccagaactggcagt 24602671
Score = 48.1 bits (24), Expect = 0.010
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 243 tggtcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggct 302
|||| ||||||||| |||||||| |||||||| || ||| || |||| |||||||||
Sbjct: 24600378 tggtgacggccaccgacttctgcgcgcccaacctcggactctccgacgactacggcggct 24600437
Query: 303 ggtgcaac 310
||||||||
Sbjct: 24600438 ggtgcaac 24600445
Score = 46.1 bits (23), Expect = 0.038
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 33 cgccacgttctacggcggcagcgacgc 59
|||||| ||||||||||||||||||||
Sbjct: 30004477 cgccaccttctacggcggcagcgacgc 30004503
>gb|C91750.2|C91750 C91750 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E31466_2A, mRNA sequence
Length = 251
Score = 127 bits (64), Expect = 1e-026
Identities = 111/126 (88%), Gaps = 1/126 (0%)
Strand = Plus / Plus
Query: 26 gcgcgcacgccacgttctacggcggcagcgacgcttttggctttatgggcggggcctgcg 85
|||||||||| ||||||||||| ||||||||||| | | ||||||||||| ||||
Sbjct: 121 gcgcgcacgcaacgttctacgggggcagcgacgcgtcanggacgatgggcggggcgtgcg 180
Query: 86 ggtacggcaacctgtgacagccaggggtacggcgtgaacaacgcggcgctgagcacggcg 145
||||||| ||||||| ||| |||||||||||| |||||||||||||||||||||||||||
Sbjct: 181 ggtacgggaacctgt-acanccaggggtacggggtgaacaacgcggcgctgagcacggcg 239
Query: 146 ctgttc 151
||||||
Sbjct: 240 ctgttc 245
>gb|CB645779.1|CB645779 OSJNEb07L24.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb07L24 5', mRNA sequence
Length = 838
Score = 125 bits (63), Expect = 5e-026
Identities = 81/87 (93%)
Strand = Plus / Plus
Query: 245 gtcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggctgg 304
|||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||
Sbjct: 460 gtcacggccaccaacttctgcccgccgaacaacgcgctcccgtccgacgacggcggctgg 519
Query: 305 tgcaacccgccccgcccgcacttcgac 331
|||||||| || ||| |||||||||||
Sbjct: 520 tgcaaccctccgcgcgcgcacttcgac 546
Score = 113 bits (57), Expect = 2e-022
Identities = 133/157 (84%), Gaps = 1/157 (0%)
Strand = Plus / Plus
Query: 28 gcgcacgccacgttctacggcggcagcgacgcttttggctttatgggcggggcctgcggg 87
||||||||||||||||||||||| | ||||| | ||| ||||| ||||| ||||||
Sbjct: 247 gcgcacgccacgttctacggcgggggtgacgcgtcgggcaccatgggaggggcgtgcggg 306
Query: 88 tacggcaacctgtgacagccaggggtacggcgtgaacaacgcggcgctgagcacggcgct 147
||||| ||||| | |||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 307 tacgggaacctct-acagccaggggtacgggacgaacacggcggcgctgagcacggcgct 365
Query: 148 gttcgacgaggggctccgctgcggcgcgtgcttcgag 184
|||| || | || ||| ||||||||||||||||||||
Sbjct: 366 gttcaacaacggcctcagctgcggcgcgtgcttcgag 402
Score = 65.9 bits (33), Expect = 4e-008
Identities = 105/129 (81%)
Strand = Plus / Plus
Query: 371 gccggcatcgtgcccgtctcctaccgccgggtgccgtgccgcaagtccggcggggtgcgg 430
|||||||| || ||||||||||||||||||||| | |||| ||| |||||| | |||
Sbjct: 586 gccggcattgtccccgtctcctaccgccgggtggcttgccagaagaagggcgggatccgg 645
Query: 431 ttcacaatcaacggcttccggtacttcaacctggtgctgatcacgaacgtggccggcgcg 490
||||| |||||||| | |||||||||||||||||| | || ||||||| ||||||
Sbjct: 646 ttcaccatcaacgggcactcctacttcaacctggtgctggtgaccaacgtgggcggcgcc 705
Query: 491 ggggacgtg 499
|| ||||||
Sbjct: 706 ggcgacgtg 714
Score = 52.0 bits (26), Expect = 6e-004
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 551 aactggggccagaactggcagtccaacgccatcctcgtcggccaggcgctctccttccgc 610
|||||||| |||||||||||| | ||| |||||| ||| |||||||||||||| |||
Sbjct: 769 aactggggtcagaactggcagagcgccgcgctcctcgacggtcaggcgctctcctttcgc 828
Query: 611 gtcacc 616
||||||
Sbjct: 829 gtcacc 834
>dbj|AK073572.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033044E11, full
insert sequence
Length = 1416
Score = 125 bits (63), Expect = 5e-026
Identities = 81/87 (93%)
Strand = Plus / Plus
Query: 245 gtcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggctgg 304
|||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||
Sbjct: 491 gtcacggccaccaacttctgcccgccgaacaacgcgctcccgtccgacgacggcggctgg 550
Query: 305 tgcaacccgccccgcccgcacttcgac 331
|||||||| || ||| |||||||||||
Sbjct: 551 tgcaaccctccgcgcgcgcacttcgac 577
Score = 113 bits (57), Expect = 2e-022
Identities = 133/157 (84%), Gaps = 1/157 (0%)
Strand = Plus / Plus
Query: 28 gcgcacgccacgttctacggcggcagcgacgcttttggctttatgggcggggcctgcggg 87
||||||||||||||||||||||| | ||||| | ||| ||||| ||||| ||||||
Sbjct: 278 gcgcacgccacgttctacggcgggggtgacgcgtcgggcaccatgggaggggcgtgcggg 337
Query: 88 tacggcaacctgtgacagccaggggtacggcgtgaacaacgcggcgctgagcacggcgct 147
||||| ||||| | |||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 338 tacgggaacctct-acagccaggggtacgggacgaacacggcggcgctgagcacggcgct 396
Query: 148 gttcgacgaggggctccgctgcggcgcgtgcttcgag 184
|||| || | || ||| ||||||||||||||||||||
Sbjct: 397 gttcaacaacggcctcagctgcggcgcgtgcttcgag 433
Score = 73.8 bits (37), Expect = 2e-010
Identities = 70/81 (86%)
Strand = Plus / Plus
Query: 551 aactggggccagaactggcagtccaacgccatcctcgtcggccaggcgctctccttccgc 610
||||||||||||||||||||| | ||| |||||| ||| ||||||||||||||||||
Sbjct: 800 aactggggccagaactggcagagcgccgcgctcctcgacggtcaggcgctctccttccgc 859
Query: 611 gtcaccgccagcgaccgccgc 631
|||||| || ||||| |||||
Sbjct: 860 gtcaccaccggcgacggccgc 880
Score = 65.9 bits (33), Expect = 4e-008
Identities = 105/129 (81%)
Strand = Plus / Plus
Query: 371 gccggcatcgtgcccgtctcctaccgccgggtgccgtgccgcaagtccggcggggtgcgg 430
|||||||| || ||||||||||||||||||||| | |||| ||| |||||| | |||
Sbjct: 617 gccggcattgtccccgtctcctaccgccgggtggcttgccagaagaagggcgggatccgg 676
Query: 431 ttcacaatcaacggcttccggtacttcaacctggtgctgatcacgaacgtggccggcgcg 490
||||| |||||||| | |||||||||||||||||| | || ||||||| ||||||
Sbjct: 677 ttcaccatcaacgggcactcctacttcaacctggtgctggtgaccaacgtgggcggcgcc 736
Query: 491 ggggacgtg 499
|| ||||||
Sbjct: 737 ggcgacgtg 745
>gb|AACV01005399.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005399, whole
genome shotgun sequence
Length = 41834
Score = 125 bits (63), Expect = 5e-026
Identities = 81/87 (93%)
Strand = Plus / Plus
Query: 245 gtcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggctgg 304
|||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||
Sbjct: 21042 gtcacggccaccaacttctgcccgccgaacaacgcgctcccgtccgacgacggcggctgg 21101
Query: 305 tgcaacccgccccgcccgcacttcgac 331
|||||||| || ||| |||||||||||
Sbjct: 21102 tgcaaccctccgcgcgcgcacttcgac 21128
Score = 97.6 bits (49), Expect = 1e-017
Identities = 95/109 (87%), Gaps = 1/109 (0%)
Strand = Plus / Plus
Query: 76 ggggcctgcgggtacggcaacctgtgacagccaggggtacggcgtgaacaacgcggcgct 135
||||| ||||||||||| ||||| | |||||||||||||||| ||||| ||||||||
Sbjct: 20877 ggggcgtgcgggtacgggaacctct-acagccaggggtacgggacgaacacggcggcgct 20935
Query: 136 gagcacggcgctgttcgacgaggggctccgctgcggcgcgtgcttcgag 184
|||||||||||||||| || | || ||| ||||||||||||||||||||
Sbjct: 20936 gagcacggcgctgttcaacaacggcctcagctgcggcgcgtgcttcgag 20984
Score = 73.8 bits (37), Expect = 2e-010
Identities = 70/81 (86%)
Strand = Plus / Plus
Query: 551 aactggggccagaactggcagtccaacgccatcctcgtcggccaggcgctctccttccgc 610
||||||||||||||||||||| | ||| |||||| ||| ||||||||||||||||||
Sbjct: 21447 aactggggccagaactggcagagcgccgcgctcctcgacggtcaggcgctctccttccgc 21506
Query: 611 gtcaccgccagcgaccgccgc 631
|||||| || ||||| |||||
Sbjct: 21507 gtcaccaccggcgacggccgc 21527
Score = 48.1 bits (24), Expect = 0.010
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 452 tacttcaacctggtgctgatcacgaacgtggccggcgcgggggacgtg 499
|||||||||||||||||| | || ||||||| |||||| || ||||||
Sbjct: 21345 tacttcaacctggtgctggtgaccaacgtgggcggcgccggcgacgtg 21392
Score = 46.1 bits (23), Expect = 0.038
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 28 gcgcacgccacgttctacggcgg 50
|||||||||||||||||||||||
Sbjct: 20735 gcgcacgccacgttctacggcgg 20757
Score = 44.1 bits (22), Expect = 0.15
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 371 gccggcatcgtgcccgtctcctaccgccgg 400
|||||||| || ||||||||||||||||||
Sbjct: 21168 gccggcattgtccccgtctcctaccgccgg 21197
>ref|XM_467754.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1289
Score = 125 bits (63), Expect = 5e-026
Identities = 81/87 (93%)
Strand = Plus / Plus
Query: 245 gtcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggctgg 304
|||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||
Sbjct: 486 gtcacggccaccaacttctgcccgccgaacaacgcgctcccgtccgacgacggcggctgg 545
Query: 305 tgcaacccgccccgcccgcacttcgac 331
|||||||| || ||| |||||||||||
Sbjct: 546 tgcaaccctccgcgcgcgcacttcgac 572
Score = 113 bits (57), Expect = 2e-022
Identities = 133/157 (84%), Gaps = 1/157 (0%)
Strand = Plus / Plus
Query: 28 gcgcacgccacgttctacggcggcagcgacgcttttggctttatgggcggggcctgcggg 87
||||||||||||||||||||||| | ||||| | ||| ||||| ||||| ||||||
Sbjct: 273 gcgcacgccacgttctacggcgggggtgacgcgtcgggcaccatgggaggggcgtgcggg 332
Query: 88 tacggcaacctgtgacagccaggggtacggcgtgaacaacgcggcgctgagcacggcgct 147
||||| ||||| | |||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 333 tacgggaacctct-acagccaggggtacgggacgaacacggcggcgctgagcacggcgct 391
Query: 148 gttcgacgaggggctccgctgcggcgcgtgcttcgag 184
|||| || | || ||| ||||||||||||||||||||
Sbjct: 392 gttcaacaacggcctcagctgcggcgcgtgcttcgag 428
Score = 73.8 bits (37), Expect = 2e-010
Identities = 70/81 (86%)
Strand = Plus / Plus
Query: 551 aactggggccagaactggcagtccaacgccatcctcgtcggccaggcgctctccttccgc 610
||||||||||||||||||||| | ||| |||||| ||| ||||||||||||||||||
Sbjct: 795 aactggggccagaactggcagagcgccgcgctcctcgacggtcaggcgctctccttccgc 854
Query: 611 gtcaccgccagcgaccgccgc 631
|||||| || ||||| |||||
Sbjct: 855 gtcaccaccggcgacggccgc 875
Score = 65.9 bits (33), Expect = 4e-008
Identities = 105/129 (81%)
Strand = Plus / Plus
Query: 371 gccggcatcgtgcccgtctcctaccgccgggtgccgtgccgcaagtccggcggggtgcgg 430
|||||||| || ||||||||||||||||||||| | |||| ||| |||||| | |||
Sbjct: 612 gccggcattgtccccgtctcctaccgccgggtggcttgccagaagaagggcgggatccgg 671
Query: 431 ttcacaatcaacggcttccggtacttcaacctggtgctgatcacgaacgtggccggcgcg 490
||||| |||||||| | |||||||||||||||||| | || ||||||| ||||||
Sbjct: 672 ttcaccatcaacgggcactcctacttcaacctggtgctggtgaccaacgtgggcggcgcc 731
Query: 491 ggggacgtg 499
|| ||||||
Sbjct: 732 ggcgacgtg 740
>ref|NT_107181.1| Oryza sativa (japonica cultivar-group)
Length = 9248309
Score = 125 bits (63), Expect = 5e-026
Identities = 81/87 (93%)
Strand = Plus / Plus
Query: 245 gtcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggctgg 304
|||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||
Sbjct: 6404643 gtcacggccaccaacttctgcccgccgaacaacgcgctcccgtccgacgacggcggctgg 6404702
Query: 305 tgcaacccgccccgcccgcacttcgac 331
|||||||| || ||| |||||||||||
Sbjct: 6404703 tgcaaccctccgcgcgcgcacttcgac 6404729
Score = 97.6 bits (49), Expect = 1e-017
Identities = 95/109 (87%), Gaps = 1/109 (0%)
Strand = Plus / Plus
Query: 76 ggggcctgcgggtacggcaacctgtgacagccaggggtacggcgtgaacaacgcggcgct 135
||||| ||||||||||| ||||| | |||||||||||||||| ||||| ||||||||
Sbjct: 6404478 ggggcgtgcgggtacgggaacctct-acagccaggggtacgggacgaacacggcggcgct 6404536
Query: 136 gagcacggcgctgttcgacgaggggctccgctgcggcgcgtgcttcgag 184
|||||||||||||||| || | || ||| ||||||||||||||||||||
Sbjct: 6404537 gagcacggcgctgttcaacaacggcctcagctgcggcgcgtgcttcgag 6404585
Score = 73.8 bits (37), Expect = 2e-010
Identities = 70/81 (86%)
Strand = Plus / Plus
Query: 551 aactggggccagaactggcagtccaacgccatcctcgtcggccaggcgctctccttccgc 610
||||||||||||||||||||| | ||| |||||| ||| ||||||||||||||||||
Sbjct: 6405048 aactggggccagaactggcagagcgccgcgctcctcgacggtcaggcgctctccttccgc 6405107
Query: 611 gtcaccgccagcgaccgccgc 631
|||||| || ||||| |||||
Sbjct: 6405108 gtcaccaccggcgacggccgc 6405128
Score = 48.1 bits (24), Expect = 0.010
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 452 tacttcaacctggtgctgatcacgaacgtggccggcgcgggggacgtg 499
|||||||||||||||||| | || ||||||| |||||| || ||||||
Sbjct: 6404946 tacttcaacctggtgctggtgaccaacgtgggcggcgccggcgacgtg 6404993
Score = 46.1 bits (23), Expect = 0.038
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 28 gcgcacgccacgttctacggcgg 50
|||||||||||||||||||||||
Sbjct: 6404336 gcgcacgccacgttctacggcgg 6404358
Score = 44.1 bits (22), Expect = 0.15
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 371 gccggcatcgtgcccgtctcctaccgccgg 400
|||||||| || ||||||||||||||||||
Sbjct: 6404769 gccggcattgtccccgtctcctaccgccgg 6404798
>ref|XM_506968.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1734_E02.30
mRNA
Length = 1417
Score = 125 bits (63), Expect = 5e-026
Identities = 81/87 (93%)
Strand = Plus / Plus
Query: 245 gtcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggctgg 304
|||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||
Sbjct: 492 gtcacggccaccaacttctgcccgccgaacaacgcgctcccgtccgacgacggcggctgg 551
Query: 305 tgcaacccgccccgcccgcacttcgac 331
|||||||| || ||| |||||||||||
Sbjct: 552 tgcaaccctccgcgcgcgcacttcgac 578
Score = 113 bits (57), Expect = 2e-022
Identities = 133/157 (84%), Gaps = 1/157 (0%)
Strand = Plus / Plus
Query: 28 gcgcacgccacgttctacggcggcagcgacgcttttggctttatgggcggggcctgcggg 87
||||||||||||||||||||||| | ||||| | ||| ||||| ||||| ||||||
Sbjct: 279 gcgcacgccacgttctacggcgggggtgacgcgtcgggcaccatgggaggggcgtgcggg 338
Query: 88 tacggcaacctgtgacagccaggggtacggcgtgaacaacgcggcgctgagcacggcgct 147
||||| ||||| | |||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 339 tacgggaacctct-acagccaggggtacgggacgaacacggcggcgctgagcacggcgct 397
Query: 148 gttcgacgaggggctccgctgcggcgcgtgcttcgag 184
|||| || | || ||| ||||||||||||||||||||
Sbjct: 398 gttcaacaacggcctcagctgcggcgcgtgcttcgag 434
Score = 73.8 bits (37), Expect = 2e-010
Identities = 70/81 (86%)
Strand = Plus / Plus
Query: 551 aactggggccagaactggcagtccaacgccatcctcgtcggccaggcgctctccttccgc 610
||||||||||||||||||||| | ||| |||||| ||| ||||||||||||||||||
Sbjct: 801 aactggggccagaactggcagagcgccgcgctcctcgacggtcaggcgctctccttccgc 860
Query: 611 gtcaccgccagcgaccgccgc 631
|||||| || ||||| |||||
Sbjct: 861 gtcaccaccggcgacggccgc 881
Score = 65.9 bits (33), Expect = 4e-008
Identities = 105/129 (81%)
Strand = Plus / Plus
Query: 371 gccggcatcgtgcccgtctcctaccgccgggtgccgtgccgcaagtccggcggggtgcgg 430
|||||||| || ||||||||||||||||||||| | |||| ||| |||||| | |||
Sbjct: 618 gccggcattgtccccgtctcctaccgccgggtggcttgccagaagaagggcgggatccgg 677
Query: 431 ttcacaatcaacggcttccggtacttcaacctggtgctgatcacgaacgtggccggcgcg 490
||||| |||||||| | |||||||||||||||||| | || ||||||| ||||||
Sbjct: 678 ttcaccatcaacgggcactcctacttcaacctggtgctggtgaccaacgtgggcggcgcc 737
Query: 491 ggggacgtg 499
|| ||||||
Sbjct: 738 ggcgacgtg 746
>dbj|AP004114.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1118_G04
Length = 134464
Score = 125 bits (63), Expect = 5e-026
Identities = 81/87 (93%)
Strand = Plus / Plus
Query: 245 gtcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggctgg 304
|||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||
Sbjct: 9512 gtcacggccaccaacttctgcccgccgaacaacgcgctcccgtccgacgacggcggctgg 9571
Query: 305 tgcaacccgccccgcccgcacttcgac 331
|||||||| || ||| |||||||||||
Sbjct: 9572 tgcaaccctccgcgcgcgcacttcgac 9598
Score = 97.6 bits (49), Expect = 1e-017
Identities = 95/109 (87%), Gaps = 1/109 (0%)
Strand = Plus / Plus
Query: 76 ggggcctgcgggtacggcaacctgtgacagccaggggtacggcgtgaacaacgcggcgct 135
||||| ||||||||||| ||||| | |||||||||||||||| ||||| ||||||||
Sbjct: 9347 ggggcgtgcgggtacgggaacctct-acagccaggggtacgggacgaacacggcggcgct 9405
Query: 136 gagcacggcgctgttcgacgaggggctccgctgcggcgcgtgcttcgag 184
|||||||||||||||| || | || ||| ||||||||||||||||||||
Sbjct: 9406 gagcacggcgctgttcaacaacggcctcagctgcggcgcgtgcttcgag 9454
Score = 73.8 bits (37), Expect = 2e-010
Identities = 70/81 (86%)
Strand = Plus / Plus
Query: 551 aactggggccagaactggcagtccaacgccatcctcgtcggccaggcgctctccttccgc 610
||||||||||||||||||||| | ||| |||||| ||| ||||||||||||||||||
Sbjct: 9917 aactggggccagaactggcagagcgccgcgctcctcgacggtcaggcgctctccttccgc 9976
Query: 611 gtcaccgccagcgaccgccgc 631
|||||| || ||||| |||||
Sbjct: 9977 gtcaccaccggcgacggccgc 9997
Score = 48.1 bits (24), Expect = 0.010
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 452 tacttcaacctggtgctgatcacgaacgtggccggcgcgggggacgtg 499
|||||||||||||||||| | || ||||||| |||||| || ||||||
Sbjct: 9815 tacttcaacctggtgctggtgaccaacgtgggcggcgccggcgacgtg 9862
Score = 46.1 bits (23), Expect = 0.038
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 28 gcgcacgccacgttctacggcgg 50
|||||||||||||||||||||||
Sbjct: 9205 gcgcacgccacgttctacggcgg 9227
Score = 44.1 bits (22), Expect = 0.15
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 371 gccggcatcgtgcccgtctcctaccgccgg 400
|||||||| || ||||||||||||||||||
Sbjct: 9638 gccggcattgtccccgtctcctaccgccgg 9667
>dbj|AP005297.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1734_E02
Length = 168566
Score = 125 bits (63), Expect = 5e-026
Identities = 81/87 (93%)
Strand = Plus / Plus
Query: 245 gtcacggccaccaacttctgcccgcccaactacgcgctcccctccgacgacggcggctgg 304
|||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||
Sbjct: 119487 gtcacggccaccaacttctgcccgccgaacaacgcgctcccgtccgacgacggcggctgg 119546
Query: 305 tgcaacccgccccgcccgcacttcgac 331
|||||||| || ||| |||||||||||
Sbjct: 119547 tgcaaccctccgcgcgcgcacttcgac 119573
Score = 97.6 bits (49), Expect = 1e-017
Identities = 95/109 (87%), Gaps = 1/109 (0%)
Strand = Plus / Plus
Query: 76 ggggcctgcgggtacggcaacctgtgacagccaggggtacggcgtgaacaacgcggcgct 135
||||| ||||||||||| ||||| | |||||||||||||||| ||||| ||||||||
Sbjct: 119322 ggggcgtgcgggtacgggaacctct-acagccaggggtacgggacgaacacggcggcgct 119380
Query: 136 gagcacggcgctgttcgacgaggggctccgctgcggcgcgtgcttcgag 184
|||||||||||||||| || | || ||| ||||||||||||||||||||
Sbjct: 119381 gagcacggcgctgttcaacaacggcctcagctgcggcgcgtgcttcgag 119429
Score = 73.8 bits (37), Expect = 2e-010
Identities = 70/81 (86%)
Strand = Plus / Plus
Query: 551 aactggggccagaactggcagtccaacgccatcctcgtcggccaggcgctctccttccgc 610
||||||||||||||||||||| | ||| |||||| ||| ||||||||||||||||||
Sbjct: 119892 aactggggccagaactggcagagcgccgcgctcctcgacggtcaggcgctctccttccgc 119951
Query: 611 gtcaccgccagcgaccgccgc 631
|||||| || ||||| |||||
Sbjct: 119952 gtcaccaccggcgacggccgc 119972
Score = 48.1 bits (24), Expect = 0.010
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 452 tacttcaacctggtgctgatcacgaacgtggccggcgcgggggacgtg 499
|||||||||||||||||| | || ||||||| |||||| || ||||||
Sbjct: 119790 tacttcaacctggtgctggtgaccaacgtgggcggcgccggcgacgtg 119837
Score = 46.1 bits (23), Expect = 0.038
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 28 gcgcacgccacgttctacggcgg 50
|||||||||||||||||||||||
Sbjct: 119180 gcgcacgccacgttctacggcgg 119202
Score = 44.1 bits (22), Expect = 0.15
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 371 gccggcatcgtgcccgtctcctaccgccgg 400
|||||||| || ||||||||||||||||||
Sbjct: 119613 gccggcattgtccccgtctcctaccgccgg 119642
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,466,989
Number of Sequences: 438736
Number of extensions: 1466989
Number of successful extensions: 13007
Number of sequences better than 0.5: 226
Number of HSP's better than 0.5 without gapping: 253
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 9724
Number of HSP's gapped (non-prelim): 3111
length of query: 1044
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1023
effective length of database: 2,791,206,460
effective search space: 2855404208580
effective search space used: 2855404208580
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)