BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 4424526.2.1
(1446 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK102701.1| Oryza sativa (japonica cultivar-group) cDNA... 149 5e-033
dbj|AK109339.2| Oryza sativa (japonica cultivar-group) cDNA... 149 5e-033
dbj|AP002863.3| Oryza sativa (japonica cultivar-group) geno... 149 5e-033
gb|AACV01000021.1| Oryza sativa (japonica cultivar-group) c... 149 5e-033
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 149 5e-033
ref|NM_183485.2| Oryza sativa (japonica cultivar-group), mRNA 149 5e-033
ref|NT_036312.3| Oryza sativa (japonica cultivar-group) 149 5e-033
gb|CH401164.1| Oryza sativa (japonica cultivar-group) chrom... 149 5e-033
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 149 5e-033
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 149 5e-033
dbj|AK061325.1| Oryza sativa (japonica cultivar-group) cDNA... 143 3e-031
dbj|AK098946.1| Oryza sativa (japonica cultivar-group) cDNA... 143 3e-031
dbj|AK104189.1| Oryza sativa (japonica cultivar-group) cDNA... 143 3e-031
dbj|AK104238.1| Oryza sativa (japonica cultivar-group) cDNA... 143 3e-031
dbj|AK104669.1| Oryza sativa (japonica cultivar-group) cDNA... 143 3e-031
dbj|AK104735.1| Oryza sativa (japonica cultivar-group) cDNA... 143 3e-031
dbj|AK119550.1| Oryza sativa (japonica cultivar-group) cDNA... 143 3e-031
ref|NM_183484.2| Oryza sativa (japonica cultivar-group), mRNA 143 3e-031
gb|D47630.1|D47630 RICS13238A Rice green shoot Oryza sativa... 131 1e-027
gb|AU095413.1|AU095413 AU095413 Rice root Oryza sativa (jap... 129 5e-027
gb|AU095414.1|AU095414 AU095414 Rice root Oryza sativa (jap... 84 2e-013
dbj|AK109944.1| Oryza sativa (japonica cultivar-group) cDNA... 80 4e-012
gb|AU174013.1|AU174013 AU174013 Rice green shoot Oryza sati... 74 2e-010
dbj|AK110636.1| Oryza sativa (japonica cultivar-group) cDNA... 70 4e-009
gb|AC137002.2| Oryza sativa (japonica cultivar-group) chrom... 70 4e-009
gb|AACV01011508.1| Oryza sativa (japonica cultivar-group) c... 70 4e-009
ref|NT_107229.1| Oryza sativa (japonica cultivar-group) 70 4e-009
gb|CH401200.1| Oryza sativa (japonica cultivar-group) chrom... 70 4e-009
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 70 4e-009
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 70 4e-009
gb|C99213.1|C99213 C99213 Rice panicle at ripening stage Or... 48 0.013
gb|AC137113.4| Oryza sativa (japonica cultivar-group) chrom... 48 0.013
ref|NT_079878.2| Oryza sativa (japonica cultivar-group) 48 0.013
ref|NT_107125.1| Oryza sativa (japonica cultivar-group) 48 0.013
dbj|AP003512.3| Oryza sativa (japonica cultivar-group) geno... 48 0.013
gb|AACV01013870.1| Oryza sativa (japonica cultivar-group) c... 48 0.013
gb|AACV01013985.1| Oryza sativa (japonica cultivar-group) c... 48 0.013
gb|CH401213.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.013
gb|CH401212.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.013
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.013
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 48 0.013
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 48 0.013
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.013
gb|AC130606.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.053
emb|AL713951.4|CNS07YPU Oryza sativa chromosome 12, . BAC O... 46 0.053
gb|AC113335.1| Genomic sequence for Oryza sativa (japonica ... 46 0.053
gb|AC132214.1| Genomic sequence for Oryza sativa, Nipponbar... 46 0.053
gb|AC105928.2| Oryza sativa (japonica cultivar-group) chrom... 46 0.053
dbj|AP004462.3| Oryza sativa (japonica cultivar-group) geno... 46 0.053
dbj|AP004872.2| Oryza sativa (japonica cultivar-group) geno... 46 0.053
dbj|AP006459.3| Oryza sativa (japonica cultivar-group) geno... 46 0.053
dbj|AP006456.4| Oryza sativa (japonica cultivar-group) geno... 46 0.053
ref|NT_079833.2| Oryza sativa (japonica cultivar-group) 46 0.053
gb|AC132485.2| Oryza sativa (japonica cultivar-group) chrom... 46 0.053
gb|AACV01000540.1| Oryza sativa (japonica cultivar-group) c... 46 0.053
gb|AACV01003893.1| Oryza sativa (japonica cultivar-group) c... 46 0.053
gb|AACV01006085.1| Oryza sativa (japonica cultivar-group) c... 46 0.053
gb|AACV01008719.1| Oryza sativa (japonica cultivar-group) c... 46 0.053
gb|AACV01009625.1| Oryza sativa (japonica cultivar-group) c... 46 0.053
gb|AACV01009626.1| Oryza sativa (japonica cultivar-group) c... 46 0.053
gb|AACV01012554.1| Oryza sativa (japonica cultivar-group) c... 46 0.053
gb|AACV01015966.1| Oryza sativa (japonica cultivar-group) c... 46 0.053
gb|AACV01021355.1| Oryza sativa (japonica cultivar-group) c... 46 0.053
gb|AACV01027099.1| Oryza sativa (japonica cultivar-group) C... 46 0.053
ref|NT_080065.1| Oryza sativa (japonica cultivar-group) chr... 46 0.053
ref|XM_472318.1| Oryza sativa (japonica cultivar-group), p... 46 0.053
ref|NT_079859.2| Oryza sativa (japonica cultivar-group) 46 0.053
ref|NT_079862.2| Oryza sativa (japonica cultivar-group) 46 0.053
ref|NT_107189.1| Oryza sativa (japonica cultivar-group) 46 0.053
ref|NT_107217.1| Oryza sativa (japonica cultivar-group) 46 0.053
gb|AC130604.4| Oryza sativa (japonica cultivar-group) chrom... 46 0.053
ref|NM_188684.1| Oryza sativa (japonica cultivar-group), p... 46 0.053
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 46 0.053
ref|NT_107178.1| Oryza sativa (japonica cultivar-group) 46 0.053
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 46 0.053
dbj|AP002855.2| Oryza sativa (japonica cultivar-group) geno... 46 0.053
gb|CH401253.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.053
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.053
gb|CH401206.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.053
gb|CH401189.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.053
gb|CH401185.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.053
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.053
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.053
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.053
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.053
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.053
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.053
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.053
emb|AL606621.3|OSJN00054 Oryza sativa genomic DNA, chromoso... 46 0.053
emb|BX548155.1|OSJN00293 Oryza sativa genomic DNA, chromoso... 46 0.053
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 46 0.053
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 46 0.053
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 46 0.053
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 46 0.053
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 46 0.053
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 46 0.053
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 46 0.053
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.053
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.053
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 46 0.053
>dbj|AK102701.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033103L17, full
insert sequence
Length = 1207
Score = 149 bits (75), Expect = 5e-033
Identities = 308/386 (79%), Gaps = 6/386 (1%)
Strand = Plus / Minus
Query: 1024 gatggacttggccggctccacgatgcccgtgcggtccacgtccaggccgaactccgacgg 1083
||||||| ||||||||||||| ||||||| ||||| |||||| ||||||||||||||
Sbjct: 461 gatggacctggccggctccactgcgcccgtgtggtccgggtccagcccgaactccgacgg 402
Query: 1084 gaagaacctcttgacgtttcc------ggcctccttgatggcgtcgacgagccggctctg 1137
| ||||||| ||||| || | |||||||||||||| ||| |||| | ||||
Sbjct: 401 caggaacctccgcacgttgccaccgccgccctccttgatggcggcgatgagcttggtctg 342
Query: 1138 gtcggcgatctgcatcgatccgagcacggagatgaccacgtccgcgcccttcaccgcgct 1197
|||||||||||||| || || ||| ||||||||| ||||| ||| | || |||||
Sbjct: 341 gtcggcgatctgcagcgcgcccagcgtggagatgacgacgtcggcgtcgcggacggcgct 282
Query: 1198 caccaggctagcctggtcgtacaggtcgcccttgaggagcgtcacgccggcgtcctggaa 1257
| |||||| || |||||||| |||||||| | |||||| || ||||||||||| ||||
Sbjct: 281 gagcaggctggcgtggtcgtagaggtcgccgtggaggagggtgacgccggcgtcgcggaa 222
Query: 1258 gctcttgagcagcgccgctttggccgggtcggacggcgccgtgtccctgacgagcgccga 1317
||||| ||| ||| || ||||| |||||||| || | |||||||||||| || |
Sbjct: 221 gctctggagaagctgcgacttggcggggtcggagggggagaggtccctgacgagggcggt 162
Query: 1318 ggtggggtggcccagccgcgcgctcgccgccacgacgtgcctgcccaggtaccccgtgcc 1377
|||||| || |||||||||||||| ||| |||||||||| ||| | ||||||||||||
Sbjct: 161 ggtgggatgacccagccgcgcgctggccaagacgacgtgccggccgatgtaccccgtgcc 102
Query: 1378 gccgaccaccaggatcttgctcttct 1403
||| |||||||||||| |||||||||
Sbjct: 101 gcccaccaccaggatcctgctcttct 76
Score = 141 bits (71), Expect = 1e-030
Identities = 221/271 (81%)
Strand = Plus / Minus
Query: 608 gcgtgcccgatcgccaggatgatgttcagagggatcggcgactcttggatctgcttgagc 667
|||||| |||||| ||| | |||||||| |||||| |||||| ||||| |||||||||
Sbjct: 877 gcgtgcgcgatcgacagcacgatgttcaacgggatctccgactcctggatttgcttgagc 818
Query: 668 acggcttcctccggcacgtactcccgccggaacgtcttgccggtcttcttctcccacagc 727
||||| ||||| ||||||||| ||| | | | |||| || ||||||||||||||||||
Sbjct: 817 acggcgtcctcgggcacgtacaccctctccagcttcttccccgtcttcttctcccacagc 758
Query: 728 gacagcagctcgttgtgcgacagcgtgttggccggcggcttgatgtacagcaccttgttc 787
| || |||||| | |||||||| || ||| || |||| |||| || | |||||||
Sbjct: 757 gccaccagctcctcgtgcgacaccgcgttcttcgccggccgtatgttcaccgtcttgttc 698
Query: 788 tccgcgcgcgggtcgtcggccgccagcaccgtgtacgtggcgatgtcgccctcctccacg 847
||||| ||||| || | |||||||||||||||||||| ||||||| ||||||||||||
Sbjct: 697 tccgcccgcggatccaccgccgccagcaccgtgtacgtcccgatgtccccctcctccacg 638
Query: 848 aacaccgccttggtgtcgccgtcgccgagga 878
|||||| |||||||| | ||||| |||||||
Sbjct: 637 aacaccaccttggtggctccgtccccgagga 607
Score = 48.1 bits (24), Expect = 0.013
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 496 gttgaggtactcgtcgacggtggtgtacttgacatccggg 535
||||||||| || |||||||||||||||| ||| ||||||
Sbjct: 986 gttgaggtagtcatcgacggtggtgtactggacgtccggg 947
>dbj|AK109339.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-E10, full
insert sequence
Length = 1206
Score = 149 bits (75), Expect = 5e-033
Identities = 308/386 (79%), Gaps = 6/386 (1%)
Strand = Plus / Minus
Query: 1024 gatggacttggccggctccacgatgcccgtgcggtccacgtccaggccgaactccgacgg 1083
||||||| ||||||||||||| ||||||| ||||| |||||| ||||||||||||||
Sbjct: 460 gatggacctggccggctccaccgcgcccgtgtggtccgggtccagcccgaactccgacgg 401
Query: 1084 gaagaacctcttgacgtttcc------ggcctccttgatggcgtcgacgagccggctctg 1137
| ||||||| ||||| || | |||||||||||||| ||| |||| | ||||
Sbjct: 400 caggaacctccgcacgttgccaccgccgccctccttgatggcggcgatgagcttggtctg 341
Query: 1138 gtcggcgatctgcatcgatccgagcacggagatgaccacgtccgcgcccttcaccgcgct 1197
|||||||||||||| || || ||| ||||||||| ||||| ||| | || |||||
Sbjct: 340 gtcggcgatctgcagcgcgcccagcgtggagatgacgacgtcggcgtcgcggacggcgct 281
Query: 1198 caccaggctagcctggtcgtacaggtcgcccttgaggagcgtcacgccggcgtcctggaa 1257
| |||||| || |||||||| |||||||| | |||||| || ||||||||||| ||||
Sbjct: 280 gagcaggctggcgtggtcgtagaggtcgccgtggaggagggtgacgccggcgtcgcggaa 221
Query: 1258 gctcttgagcagcgccgctttggccgggtcggacggcgccgtgtccctgacgagcgccga 1317
||||| ||| ||| || ||||| |||||||| || | |||||||||||| || |
Sbjct: 220 gctctggagaagctgcgacttggcggggtcggagggggagaggtccctgacgagggcggt 161
Query: 1318 ggtggggtggcccagccgcgcgctcgccgccacgacgtgcctgcccaggtaccccgtgcc 1377
|||||| || |||||||||||||| ||| |||||||||| ||| | ||||||||||||
Sbjct: 160 ggtgggatgacccagccgcgcgctggccaagacgacgtgccggccgatgtaccccgtgcc 101
Query: 1378 gccgaccaccaggatcttgctcttct 1403
||| |||||||||||| |||||||||
Sbjct: 100 gcccaccaccaggatcctgctcttct 75
Score = 141 bits (71), Expect = 1e-030
Identities = 221/271 (81%)
Strand = Plus / Minus
Query: 608 gcgtgcccgatcgccaggatgatgttcagagggatcggcgactcttggatctgcttgagc 667
|||||| |||||| ||| | |||||||| |||||| |||||| ||||| |||||||||
Sbjct: 876 gcgtgcgcgatcgacagcacgatgttcaacgggatctccgactcctggatttgcttgagc 817
Query: 668 acggcttcctccggcacgtactcccgccggaacgtcttgccggtcttcttctcccacagc 727
||||| ||||| ||||||||| ||| | | | |||| || ||||||||||||||||||
Sbjct: 816 acggcgtcctcgggcacgtacaccctctccagcttcttccccgtcttcttctcccacagc 757
Query: 728 gacagcagctcgttgtgcgacagcgtgttggccggcggcttgatgtacagcaccttgttc 787
| || |||||| | |||||||| || ||| || |||| |||| || | |||||||
Sbjct: 756 gccaccagctcctcgtgcgacaccgcgttcttcgccggccgtatgttcaccgtcttgttc 697
Query: 788 tccgcgcgcgggtcgtcggccgccagcaccgtgtacgtggcgatgtcgccctcctccacg 847
||||| ||||| || | |||||||||||||||||||| ||||||| ||||||||||||
Sbjct: 696 tccgcccgcggatccaccgccgccagcaccgtgtacgtcccgatgtccccctcctccacg 637
Query: 848 aacaccgccttggtgtcgccgtcgccgagga 878
|||||| |||||||| | ||||| |||||||
Sbjct: 636 aacaccaccttggtggctccgtccccgagga 606
Score = 48.1 bits (24), Expect = 0.013
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 496 gttgaggtactcgtcgacggtggtgtacttgacatccggg 535
||||||||| || |||||||||||||||| ||| ||||||
Sbjct: 985 gttgaggtagtcatcgacggtggtgtactggacgtccggg 946
>dbj|AP002863.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0005A05
Length = 190834
Score = 149 bits (75), Expect = 5e-033
Identities = 308/386 (79%), Gaps = 6/386 (1%)
Strand = Plus / Plus
Query: 1024 gatggacttggccggctccacgatgcccgtgcggtccacgtccaggccgaactccgacgg 1083
||||||| ||||||||||||| ||||||| ||||| |||||| ||||||||||||||
Sbjct: 78829 gatggacctggccggctccaccgcgcccgtgtggtccgggtccagcccgaactccgacgg 78888
Query: 1084 gaagaacctcttgacgtttcc------ggcctccttgatggcgtcgacgagccggctctg 1137
| ||||||| ||||| || | |||||||||||||| ||| |||| | ||||
Sbjct: 78889 caggaacctccgcacgttgccaccgccgccctccttgatggcggcgatgagcttggtctg 78948
Query: 1138 gtcggcgatctgcatcgatccgagcacggagatgaccacgtccgcgcccttcaccgcgct 1197
|||||||||||||| || || ||| ||||||||| ||||| ||| | || |||||
Sbjct: 78949 gtcggcgatctgcagcgcgcccagcgtggagatgacgacgtcggcgtcgcggacggcgct 79008
Query: 1198 caccaggctagcctggtcgtacaggtcgcccttgaggagcgtcacgccggcgtcctggaa 1257
| |||||| || |||||||| |||||||| | |||||| || ||||||||||| ||||
Sbjct: 79009 gagcaggctggcgtggtcgtagaggtcgccgtggaggagggtgacgccggcgtcgcggaa 79068
Query: 1258 gctcttgagcagcgccgctttggccgggtcggacggcgccgtgtccctgacgagcgccga 1317
||||| ||| ||| || ||||| |||||||| || | |||||||||||| || |
Sbjct: 79069 gctctggagaagctgcgacttggcggggtcggagggggagaggtccctgacgagggcggt 79128
Query: 1318 ggtggggtggcccagccgcgcgctcgccgccacgacgtgcctgcccaggtaccccgtgcc 1377
|||||| || |||||||||||||| ||| |||||||||| ||| | ||||||||||||
Sbjct: 79129 ggtgggatgacccagccgcgcgctggccaagacgacgtgccggccgatgtaccccgtgcc 79188
Query: 1378 gccgaccaccaggatcttgctcttct 1403
||| |||||||||||| |||||||||
Sbjct: 79189 gcccaccaccaggatcctgctcttct 79214
Score = 143 bits (72), Expect = 3e-031
Identities = 243/300 (81%)
Strand = Plus / Plus
Query: 1103 ccggcctccttgatggcgtcgacgagccggctctggtcggcgatctgcatcgatccgagc 1162
|||||||||||||||||||||| ||||| | ||||||||| || ||| ||| | | |
Sbjct: 74356 ccggcctccttgatggcgtcgatgagcctggtctggtcggggacctgggtcgcgcgcacc 74415
Query: 1163 acggagatgaccacgtccgcgcccttcaccgcgctcaccaggctagcctggtcgtacagg 1222
|||||||||| ||||| ||| | || |||| || |||||| || ||||||| |||
Sbjct: 74416 gcggagatgacgacgtcggcgtcgcggacggcgcgcagcaggctggcgtggtcgtggagg 74475
Query: 1223 tcgcccttgaggagcgtcacgccggcgtcctggaagctcttgagcagcgccgctttggcc 1282
||||| | |||||| || ||||||||||| ||||| | | ||||||| ||| |||||
Sbjct: 74476 tcgccgtggaggagggtgacgccggcgtcgcggaaggtgtggagcagctgcgccttggcg 74535
Query: 1283 gggtcggacggcgccgtgtccctgacgagcgccgaggtggggtggcccagccgcgcgctc 1342
|||||||| || || |||||||||||| || | |||||| || |||||||||||||||
Sbjct: 74536 gggtcggagggggcgaggtccctgacgagggcggtggtgggatgacccagccgcgcgctc 74595
Query: 1343 gccgccacgacgtgcctgcccaggtaccccgtgccgccgaccaccaggatcttgctcttc 1402
|| || ||||| |||| ||| | |||||||||||||||||||||||||||| ||||||||
Sbjct: 74596 gcggcaacgacatgccggccgatgtaccccgtgccgccgaccaccaggatcctgctcttc 74655
Score = 123 bits (62), Expect = 3e-025
Identities = 185/226 (81%)
Strand = Plus / Plus
Query: 653 tggatctgcttgagcacggcttcctccggcacgtactcccgccggaacgtcttgccggtc 712
||||| |||||||||||||| ||||| ||||||||| ||| | | | |||| || |||
Sbjct: 78458 tggatttgcttgagcacggcgtcctcgggcacgtacaccctctccagcttcttccccgtc 78517
Query: 713 ttcttctcccacagcgacagcagctcgttgtgcgacagcgtgttggccggcggcttgatg 772
|||||||||||||||| || |||||| | |||||||| || ||| || |||| |||
Sbjct: 78518 ttcttctcccacagcgccaccagctcctcgtgcgacaccgcgttcttcgccggccgtatg 78577
Query: 773 tacagcaccttgttctccgcgcgcgggtcgtcggccgccagcaccgtgtacgtggcgatg 832
| || | |||||||||||| ||||| || | |||||||||||||||||||| |||||
Sbjct: 78578 ttcaccgtcttgttctccgcccgcggatccaccgccgccagcaccgtgtacgtcccgatg 78637
Query: 833 tcgccctcctccacgaacaccgccttggtgtcgccgtcgccgagga 878
|| |||||||||||||||||| |||||||| | ||||| |||||||
Sbjct: 78638 tccccctcctccacgaacaccaccttggtggctccgtccccgagga 78683
Score = 115 bits (58), Expect = 7e-023
Identities = 130/154 (84%)
Strand = Plus / Plus
Query: 710 gtcttcttctcccacagcgacagcagctcgttgtgcgacagcgtgttggccggcggcttg 769
|||||||||||||||| || |||||||| |||||||| ||||| |||||||||
Sbjct: 73951 gtcttcttctcccacatgctcaccagctcgtcgtgcgacatggtgttcgccggcggccgt 74010
Query: 770 atgtacagcaccttgttctccgcgcgcgggtcgtcggccgccagcaccgtgtacgtggcg 829
|||| |||| |||||||||||| || || || | ||||||||||||||||||||| ||
Sbjct: 74011 atgtgcagcgtcttgttctccgcccggggatccaccgccgccagcaccgtgtacgtgccg 74070
Query: 830 atgtcgccctcctccacgaacaccgccttggtgt 863
||||| |||||||||||||||||| |||||||||
Sbjct: 74071 atgtccccctcctccacgaacaccaccttggtgt 74104
Score = 48.1 bits (24), Expect = 0.013
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 496 gttgaggtactcgtcgacggtggtgtacttgacatccggg 535
||||||||| || |||||||||||||||| ||| ||||||
Sbjct: 78187 gttgaggtagtcatcgacggtggtgtactggacgtccggg 78226
>gb|AACV01000021.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg000021, whole
genome shotgun sequence
Length = 82403
Score = 149 bits (75), Expect = 5e-033
Identities = 308/386 (79%), Gaps = 6/386 (1%)
Strand = Plus / Minus
Query: 1024 gatggacttggccggctccacgatgcccgtgcggtccacgtccaggccgaactccgacgg 1083
||||||| ||||||||||||| ||||||| ||||| |||||| ||||||||||||||
Sbjct: 42935 gatggacctggccggctccaccgcgcccgtgtggtccgggtccagcccgaactccgacgg 42876
Query: 1084 gaagaacctcttgacgtttcc------ggcctccttgatggcgtcgacgagccggctctg 1137
| ||||||| ||||| || | |||||||||||||| ||| |||| | ||||
Sbjct: 42875 caggaacctccgcacgttgccaccgccgccctccttgatggcggcgatgagcttggtctg 42816
Query: 1138 gtcggcgatctgcatcgatccgagcacggagatgaccacgtccgcgcccttcaccgcgct 1197
|||||||||||||| || || ||| ||||||||| ||||| ||| | || |||||
Sbjct: 42815 gtcggcgatctgcagcgcgcccagcgtggagatgacgacgtcggcgtcgcggacggcgct 42756
Query: 1198 caccaggctagcctggtcgtacaggtcgcccttgaggagcgtcacgccggcgtcctggaa 1257
| |||||| || |||||||| |||||||| | |||||| || ||||||||||| ||||
Sbjct: 42755 gagcaggctggcgtggtcgtagaggtcgccgtggaggagggtgacgccggcgtcgcggaa 42696
Query: 1258 gctcttgagcagcgccgctttggccgggtcggacggcgccgtgtccctgacgagcgccga 1317
||||| ||| ||| || ||||| |||||||| || | |||||||||||| || |
Sbjct: 42695 gctctggagaagctgcgacttggcggggtcggagggggagaggtccctgacgagggcggt 42636
Query: 1318 ggtggggtggcccagccgcgcgctcgccgccacgacgtgcctgcccaggtaccccgtgcc 1377
|||||| || |||||||||||||| ||| |||||||||| ||| | ||||||||||||
Sbjct: 42635 ggtgggatgacccagccgcgcgctggccaagacgacgtgccggccgatgtaccccgtgcc 42576
Query: 1378 gccgaccaccaggatcttgctcttct 1403
||| |||||||||||| |||||||||
Sbjct: 42575 gcccaccaccaggatcctgctcttct 42550
Score = 143 bits (72), Expect = 3e-031
Identities = 243/300 (81%)
Strand = Plus / Minus
Query: 1103 ccggcctccttgatggcgtcgacgagccggctctggtcggcgatctgcatcgatccgagc 1162
|||||||||||||||||||||| ||||| | ||||||||| || ||| ||| | | |
Sbjct: 47417 ccggcctccttgatggcgtcgatgagcctggtctggtcggggacctgggtcgcgcgcacc 47358
Query: 1163 acggagatgaccacgtccgcgcccttcaccgcgctcaccaggctagcctggtcgtacagg 1222
|||||||||| ||||| ||| | || |||| || |||||| || ||||||| |||
Sbjct: 47357 gcggagatgacgacgtcggcgtcgcggacggcgcgcagcaggctggcgtggtcgtggagg 47298
Query: 1223 tcgcccttgaggagcgtcacgccggcgtcctggaagctcttgagcagcgccgctttggcc 1282
||||| | |||||| || ||||||||||| ||||| | | ||||||| ||| |||||
Sbjct: 47297 tcgccgtggaggagggtgacgccggcgtcgcggaaggtgtggagcagctgcgccttggcg 47238
Query: 1283 gggtcggacggcgccgtgtccctgacgagcgccgaggtggggtggcccagccgcgcgctc 1342
|||||||| || || |||||||||||| || | |||||| || |||||||||||||||
Sbjct: 47237 gggtcggagggggcgaggtccctgacgagggcggtggtgggatgacccagccgcgcgctc 47178
Query: 1343 gccgccacgacgtgcctgcccaggtaccccgtgccgccgaccaccaggatcttgctcttc 1402
|| || ||||| |||| ||| | |||||||||||||||||||||||||||| ||||||||
Sbjct: 47177 gcggcaacgacatgccggccgatgtaccccgtgccgccgaccaccaggatcctgctcttc 47118
Score = 123 bits (62), Expect = 3e-025
Identities = 185/226 (81%)
Strand = Plus / Minus
Query: 653 tggatctgcttgagcacggcttcctccggcacgtactcccgccggaacgtcttgccggtc 712
||||| |||||||||||||| ||||| ||||||||| ||| | | | |||| || |||
Sbjct: 43315 tggatttgcttgagcacggcgtcctcgggcacgtacaccctctccagcttcttccccgtc 43256
Query: 713 ttcttctcccacagcgacagcagctcgttgtgcgacagcgtgttggccggcggcttgatg 772
|||||||||||||||| || |||||| | |||||||| || ||| || |||| |||
Sbjct: 43255 ttcttctcccacagcgccaccagctcctcgtgcgacaccgcgttcttcgccggccgtatg 43196
Query: 773 tacagcaccttgttctccgcgcgcgggtcgtcggccgccagcaccgtgtacgtggcgatg 832
| || | |||||||||||| ||||| || | |||||||||||||||||||| |||||
Sbjct: 43195 ttcaccgtcttgttctccgcccgcggatccaccgccgccagcaccgtgtacgtcccgatg 43136
Query: 833 tcgccctcctccacgaacaccgccttggtgtcgccgtcgccgagga 878
|| |||||||||||||||||| |||||||| | ||||| |||||||
Sbjct: 43135 tccccctcctccacgaacaccaccttggtggctccgtccccgagga 43090
Score = 115 bits (58), Expect = 7e-023
Identities = 130/154 (84%)
Strand = Plus / Minus
Query: 710 gtcttcttctcccacagcgacagcagctcgttgtgcgacagcgtgttggccggcggcttg 769
|||||||||||||||| || |||||||| |||||||| ||||| |||||||||
Sbjct: 47822 gtcttcttctcccacatgctcaccagctcgtcgtgcgacatggtgttcgccggcggccgt 47763
Query: 770 atgtacagcaccttgttctccgcgcgcgggtcgtcggccgccagcaccgtgtacgtggcg 829
|||| |||| |||||||||||| || || || | ||||||||||||||||||||| ||
Sbjct: 47762 atgtgcagcgtcttgttctccgcccggggatccaccgccgccagcaccgtgtacgtgccg 47703
Query: 830 atgtcgccctcctccacgaacaccgccttggtgt 863
||||| |||||||||||||||||| |||||||||
Sbjct: 47702 atgtccccctcctccacgaacaccaccttggtgt 47669
Score = 48.1 bits (24), Expect = 0.013
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 496 gttgaggtactcgtcgacggtggtgtacttgacatccggg 535
||||||||| || |||||||||||||||| ||| ||||||
Sbjct: 43586 gttgaggtagtcatcgacggtggtgtactggacgtccggg 43547
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
complete sequence
Length = 43342410
Score = 149 bits (75), Expect = 5e-033
Identities = 308/386 (79%), Gaps = 6/386 (1%)
Strand = Plus / Plus
Query: 1024 gatggacttggccggctccacgatgcccgtgcggtccacgtccaggccgaactccgacgg 1083
||||||| ||||||||||||| ||||||| ||||| |||||| ||||||||||||||
Sbjct: 324793 gatggacctggccggctccaccgcgcccgtgtggtccgggtccagcccgaactccgacgg 324852
Query: 1084 gaagaacctcttgacgtttcc------ggcctccttgatggcgtcgacgagccggctctg 1137
| ||||||| ||||| || | |||||||||||||| ||| |||| | ||||
Sbjct: 324853 caggaacctccgcacgttgccaccgccgccctccttgatggcggcgatgagcttggtctg 324912
Query: 1138 gtcggcgatctgcatcgatccgagcacggagatgaccacgtccgcgcccttcaccgcgct 1197
|||||||||||||| || || ||| ||||||||| ||||| ||| | || |||||
Sbjct: 324913 gtcggcgatctgcagcgcgcccagcgtggagatgacgacgtcggcgtcgcggacggcgct 324972
Query: 1198 caccaggctagcctggtcgtacaggtcgcccttgaggagcgtcacgccggcgtcctggaa 1257
| |||||| || |||||||| |||||||| | |||||| || ||||||||||| ||||
Sbjct: 324973 gagcaggctggcgtggtcgtagaggtcgccgtggaggagggtgacgccggcgtcgcggaa 325032
Query: 1258 gctcttgagcagcgccgctttggccgggtcggacggcgccgtgtccctgacgagcgccga 1317
||||| ||| ||| || ||||| |||||||| || | |||||||||||| || |
Sbjct: 325033 gctctggagaagctgcgacttggcggggtcggagggggagaggtccctgacgagggcggt 325092
Query: 1318 ggtggggtggcccagccgcgcgctcgccgccacgacgtgcctgcccaggtaccccgtgcc 1377
|||||| || |||||||||||||| ||| |||||||||| ||| | ||||||||||||
Sbjct: 325093 ggtgggatgacccagccgcgcgctggccaagacgacgtgccggccgatgtaccccgtgcc 325152
Query: 1378 gccgaccaccaggatcttgctcttct 1403
||| |||||||||||| |||||||||
Sbjct: 325153 gcccaccaccaggatcctgctcttct 325178
Score = 143 bits (72), Expect = 3e-031
Identities = 243/300 (81%)
Strand = Plus / Plus
Query: 1103 ccggcctccttgatggcgtcgacgagccggctctggtcggcgatctgcatcgatccgagc 1162
|||||||||||||||||||||| ||||| | ||||||||| || ||| ||| | | |
Sbjct: 320320 ccggcctccttgatggcgtcgatgagcctggtctggtcggggacctgggtcgcgcgcacc 320379
Query: 1163 acggagatgaccacgtccgcgcccttcaccgcgctcaccaggctagcctggtcgtacagg 1222
|||||||||| ||||| ||| | || |||| || |||||| || ||||||| |||
Sbjct: 320380 gcggagatgacgacgtcggcgtcgcggacggcgcgcagcaggctggcgtggtcgtggagg 320439
Query: 1223 tcgcccttgaggagcgtcacgccggcgtcctggaagctcttgagcagcgccgctttggcc 1282
||||| | |||||| || ||||||||||| ||||| | | ||||||| ||| |||||
Sbjct: 320440 tcgccgtggaggagggtgacgccggcgtcgcggaaggtgtggagcagctgcgccttggcg 320499
Query: 1283 gggtcggacggcgccgtgtccctgacgagcgccgaggtggggtggcccagccgcgcgctc 1342
|||||||| || || |||||||||||| || | |||||| || |||||||||||||||
Sbjct: 320500 gggtcggagggggcgaggtccctgacgagggcggtggtgggatgacccagccgcgcgctc 320559
Query: 1343 gccgccacgacgtgcctgcccaggtaccccgtgccgccgaccaccaggatcttgctcttc 1402
|| || ||||| |||| ||| | |||||||||||||||||||||||||||| ||||||||
Sbjct: 320560 gcggcaacgacatgccggccgatgtaccccgtgccgccgaccaccaggatcctgctcttc 320619
Score = 123 bits (62), Expect = 3e-025
Identities = 185/226 (81%)
Strand = Plus / Plus
Query: 653 tggatctgcttgagcacggcttcctccggcacgtactcccgccggaacgtcttgccggtc 712
||||| |||||||||||||| ||||| ||||||||| ||| | | | |||| || |||
Sbjct: 324422 tggatttgcttgagcacggcgtcctcgggcacgtacaccctctccagcttcttccccgtc 324481
Query: 713 ttcttctcccacagcgacagcagctcgttgtgcgacagcgtgttggccggcggcttgatg 772
|||||||||||||||| || |||||| | |||||||| || ||| || |||| |||
Sbjct: 324482 ttcttctcccacagcgccaccagctcctcgtgcgacaccgcgttcttcgccggccgtatg 324541
Query: 773 tacagcaccttgttctccgcgcgcgggtcgtcggccgccagcaccgtgtacgtggcgatg 832
| || | |||||||||||| ||||| || | |||||||||||||||||||| |||||
Sbjct: 324542 ttcaccgtcttgttctccgcccgcggatccaccgccgccagcaccgtgtacgtcccgatg 324601
Query: 833 tcgccctcctccacgaacaccgccttggtgtcgccgtcgccgagga 878
|| |||||||||||||||||| |||||||| | ||||| |||||||
Sbjct: 324602 tccccctcctccacgaacaccaccttggtggctccgtccccgagga 324647
Score = 115 bits (58), Expect = 7e-023
Identities = 130/154 (84%)
Strand = Plus / Plus
Query: 710 gtcttcttctcccacagcgacagcagctcgttgtgcgacagcgtgttggccggcggcttg 769
|||||||||||||||| || |||||||| |||||||| ||||| |||||||||
Sbjct: 319915 gtcttcttctcccacatgctcaccagctcgtcgtgcgacatggtgttcgccggcggccgt 319974
Query: 770 atgtacagcaccttgttctccgcgcgcgggtcgtcggccgccagcaccgtgtacgtggcg 829
|||| |||| |||||||||||| || || || | ||||||||||||||||||||| ||
Sbjct: 319975 atgtgcagcgtcttgttctccgcccggggatccaccgccgccagcaccgtgtacgtgccg 320034
Query: 830 atgtcgccctcctccacgaacaccgccttggtgt 863
||||| |||||||||||||||||| |||||||||
Sbjct: 320035 atgtccccctcctccacgaacaccaccttggtgt 320068
Score = 48.1 bits (24), Expect = 0.013
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 496 gttgaggtactcgtcgacggtggtgtacttgacatccggg 535
||||||||| || |||||||||||||||| ||| ||||||
Sbjct: 324151 gttgaggtagtcatcgacggtggtgtactggacgtccggg 324190
Score = 46.1 bits (23), Expect = 0.053
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 1093 cttgacgtttccggcctccttgatggcgtcgacga 1127
|||||| ||||||||||||||||| || |||||||
Sbjct: 7620790 cttgacatttccggcctccttgatcgcctcgacga 7620824
>ref|NM_183485.2| Oryza sativa (japonica cultivar-group), mRNA
Length = 1207
Score = 149 bits (75), Expect = 5e-033
Identities = 308/386 (79%), Gaps = 6/386 (1%)
Strand = Plus / Minus
Query: 1024 gatggacttggccggctccacgatgcccgtgcggtccacgtccaggccgaactccgacgg 1083
||||||| ||||||||||||| ||||||| ||||| |||||| ||||||||||||||
Sbjct: 461 gatggacctggccggctccaccgcgcccgtgtggtccgggtccagcccgaactccgacgg 402
Query: 1084 gaagaacctcttgacgtttcc------ggcctccttgatggcgtcgacgagccggctctg 1137
| ||||||| ||||| || | |||||||||||||| ||| |||| | ||||
Sbjct: 401 caggaacctccgcacgttgccaccgccgccctccttgatggcggcgatgagcttggtctg 342
Query: 1138 gtcggcgatctgcatcgatccgagcacggagatgaccacgtccgcgcccttcaccgcgct 1197
|||||||||||||| || || ||| ||||||||| ||||| ||| | || |||||
Sbjct: 341 gtcggcgatctgcagcgcgcccagcgtggagatgacgacgtcggcgtcgcggacggcgct 282
Query: 1198 caccaggctagcctggtcgtacaggtcgcccttgaggagcgtcacgccggcgtcctggaa 1257
| |||||| || |||||||| |||||||| | |||||| || ||||||||||| ||||
Sbjct: 281 gagcaggctggcgtggtcgtagaggtcgccgtggaggagggtgacgccggcgtcgcggaa 222
Query: 1258 gctcttgagcagcgccgctttggccgggtcggacggcgccgtgtccctgacgagcgccga 1317
||||| ||| ||| || ||||| |||||||| || | |||||||||||| || |
Sbjct: 221 gctctggagaagctgcgacttggcggggtcggagggggagaggtccctgacgagggcggt 162
Query: 1318 ggtggggtggcccagccgcgcgctcgccgccacgacgtgcctgcccaggtaccccgtgcc 1377
|||||| || |||||||||||||| ||| |||||||||| ||| | ||||||||||||
Sbjct: 161 ggtgggatgacccagccgcgcgctggccaagacgacgtgccggccgatgtaccccgtgcc 102
Query: 1378 gccgaccaccaggatcttgctcttct 1403
||| |||||||||||| |||||||||
Sbjct: 101 gcccaccaccaggatcctgctcttct 76
Score = 141 bits (71), Expect = 1e-030
Identities = 221/271 (81%)
Strand = Plus / Minus
Query: 608 gcgtgcccgatcgccaggatgatgttcagagggatcggcgactcttggatctgcttgagc 667
|||||| |||||| ||| | |||||||| |||||| |||||| ||||| |||||||||
Sbjct: 877 gcgtgcgcgatcgacagcacgatgttcaacgggatctccgactcctggatttgcttgagc 818
Query: 668 acggcttcctccggcacgtactcccgccggaacgtcttgccggtcttcttctcccacagc 727
||||| ||||| ||||||||| ||| | | | |||| || ||||||||||||||||||
Sbjct: 817 acggcgtcctcgggcacgtacaccctctccagcttcttccccgtcttcttctcccacagc 758
Query: 728 gacagcagctcgttgtgcgacagcgtgttggccggcggcttgatgtacagcaccttgttc 787
| || |||||| | |||||||| || ||| || |||| |||| || | |||||||
Sbjct: 757 gccaccagctcctcgtgcgacaccgcgttcttcgccggccgtatgttcaccgtcttgttc 698
Query: 788 tccgcgcgcgggtcgtcggccgccagcaccgtgtacgtggcgatgtcgccctcctccacg 847
||||| ||||| || | |||||||||||||||||||| ||||||| ||||||||||||
Sbjct: 697 tccgcccgcggatccaccgccgccagcaccgtgtacgtcccgatgtccccctcctccacg 638
Query: 848 aacaccgccttggtgtcgccgtcgccgagga 878
|||||| |||||||| | ||||| |||||||
Sbjct: 637 aacaccaccttggtggctccgtccccgagga 607
Score = 48.1 bits (24), Expect = 0.013
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 496 gttgaggtactcgtcgacggtggtgtacttgacatccggg 535
||||||||| || |||||||||||||||| ||| ||||||
Sbjct: 986 gttgaggtagtcatcgacggtggtgtactggacgtccggg 947
>ref|NT_036312.3| Oryza sativa (japonica cultivar-group)
Length = 10050053
Score = 149 bits (75), Expect = 5e-033
Identities = 308/386 (79%), Gaps = 6/386 (1%)
Strand = Plus / Plus
Query: 1024 gatggacttggccggctccacgatgcccgtgcggtccacgtccaggccgaactccgacgg 1083
||||||| ||||||||||||| ||||||| ||||| |||||| ||||||||||||||
Sbjct: 324793 gatggacctggccggctccaccgcgcccgtgtggtccgggtccagcccgaactccgacgg 324852
Query: 1084 gaagaacctcttgacgtttcc------ggcctccttgatggcgtcgacgagccggctctg 1137
| ||||||| ||||| || | |||||||||||||| ||| |||| | ||||
Sbjct: 324853 caggaacctccgcacgttgccaccgccgccctccttgatggcggcgatgagcttggtctg 324912
Query: 1138 gtcggcgatctgcatcgatccgagcacggagatgaccacgtccgcgcccttcaccgcgct 1197
|||||||||||||| || || ||| ||||||||| ||||| ||| | || |||||
Sbjct: 324913 gtcggcgatctgcagcgcgcccagcgtggagatgacgacgtcggcgtcgcggacggcgct 324972
Query: 1198 caccaggctagcctggtcgtacaggtcgcccttgaggagcgtcacgccggcgtcctggaa 1257
| |||||| || |||||||| |||||||| | |||||| || ||||||||||| ||||
Sbjct: 324973 gagcaggctggcgtggtcgtagaggtcgccgtggaggagggtgacgccggcgtcgcggaa 325032
Query: 1258 gctcttgagcagcgccgctttggccgggtcggacggcgccgtgtccctgacgagcgccga 1317
||||| ||| ||| || ||||| |||||||| || | |||||||||||| || |
Sbjct: 325033 gctctggagaagctgcgacttggcggggtcggagggggagaggtccctgacgagggcggt 325092
Query: 1318 ggtggggtggcccagccgcgcgctcgccgccacgacgtgcctgcccaggtaccccgtgcc 1377
|||||| || |||||||||||||| ||| |||||||||| ||| | ||||||||||||
Sbjct: 325093 ggtgggatgacccagccgcgcgctggccaagacgacgtgccggccgatgtaccccgtgcc 325152
Query: 1378 gccgaccaccaggatcttgctcttct 1403
||| |||||||||||| |||||||||
Sbjct: 325153 gcccaccaccaggatcctgctcttct 325178
Score = 143 bits (72), Expect = 3e-031
Identities = 243/300 (81%)
Strand = Plus / Plus
Query: 1103 ccggcctccttgatggcgtcgacgagccggctctggtcggcgatctgcatcgatccgagc 1162
|||||||||||||||||||||| ||||| | ||||||||| || ||| ||| | | |
Sbjct: 320320 ccggcctccttgatggcgtcgatgagcctggtctggtcggggacctgggtcgcgcgcacc 320379
Query: 1163 acggagatgaccacgtccgcgcccttcaccgcgctcaccaggctagcctggtcgtacagg 1222
|||||||||| ||||| ||| | || |||| || |||||| || ||||||| |||
Sbjct: 320380 gcggagatgacgacgtcggcgtcgcggacggcgcgcagcaggctggcgtggtcgtggagg 320439
Query: 1223 tcgcccttgaggagcgtcacgccggcgtcctggaagctcttgagcagcgccgctttggcc 1282
||||| | |||||| || ||||||||||| ||||| | | ||||||| ||| |||||
Sbjct: 320440 tcgccgtggaggagggtgacgccggcgtcgcggaaggtgtggagcagctgcgccttggcg 320499
Query: 1283 gggtcggacggcgccgtgtccctgacgagcgccgaggtggggtggcccagccgcgcgctc 1342
|||||||| || || |||||||||||| || | |||||| || |||||||||||||||
Sbjct: 320500 gggtcggagggggcgaggtccctgacgagggcggtggtgggatgacccagccgcgcgctc 320559
Query: 1343 gccgccacgacgtgcctgcccaggtaccccgtgccgccgaccaccaggatcttgctcttc 1402
|| || ||||| |||| ||| | |||||||||||||||||||||||||||| ||||||||
Sbjct: 320560 gcggcaacgacatgccggccgatgtaccccgtgccgccgaccaccaggatcctgctcttc 320619
Score = 123 bits (62), Expect = 3e-025
Identities = 185/226 (81%)
Strand = Plus / Plus
Query: 653 tggatctgcttgagcacggcttcctccggcacgtactcccgccggaacgtcttgccggtc 712
||||| |||||||||||||| ||||| ||||||||| ||| | | | |||| || |||
Sbjct: 324422 tggatttgcttgagcacggcgtcctcgggcacgtacaccctctccagcttcttccccgtc 324481
Query: 713 ttcttctcccacagcgacagcagctcgttgtgcgacagcgtgttggccggcggcttgatg 772
|||||||||||||||| || |||||| | |||||||| || ||| || |||| |||
Sbjct: 324482 ttcttctcccacagcgccaccagctcctcgtgcgacaccgcgttcttcgccggccgtatg 324541
Query: 773 tacagcaccttgttctccgcgcgcgggtcgtcggccgccagcaccgtgtacgtggcgatg 832
| || | |||||||||||| ||||| || | |||||||||||||||||||| |||||
Sbjct: 324542 ttcaccgtcttgttctccgcccgcggatccaccgccgccagcaccgtgtacgtcccgatg 324601
Query: 833 tcgccctcctccacgaacaccgccttggtgtcgccgtcgccgagga 878
|| |||||||||||||||||| |||||||| | ||||| |||||||
Sbjct: 324602 tccccctcctccacgaacaccaccttggtggctccgtccccgagga 324647
Score = 115 bits (58), Expect = 7e-023
Identities = 130/154 (84%)
Strand = Plus / Plus
Query: 710 gtcttcttctcccacagcgacagcagctcgttgtgcgacagcgtgttggccggcggcttg 769
|||||||||||||||| || |||||||| |||||||| ||||| |||||||||
Sbjct: 319915 gtcttcttctcccacatgctcaccagctcgtcgtgcgacatggtgttcgccggcggccgt 319974
Query: 770 atgtacagcaccttgttctccgcgcgcgggtcgtcggccgccagcaccgtgtacgtggcg 829
|||| |||| |||||||||||| || || || | ||||||||||||||||||||| ||
Sbjct: 319975 atgtgcagcgtcttgttctccgcccggggatccaccgccgccagcaccgtgtacgtgccg 320034
Query: 830 atgtcgccctcctccacgaacaccgccttggtgt 863
||||| |||||||||||||||||| |||||||||
Sbjct: 320035 atgtccccctcctccacgaacaccaccttggtgt 320068
Score = 48.1 bits (24), Expect = 0.013
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 496 gttgaggtactcgtcgacggtggtgtacttgacatccggg 535
||||||||| || |||||||||||||||| ||| ||||||
Sbjct: 324151 gttgaggtagtcatcgacggtggtgtactggacgtccggg 324190
Score = 46.1 bits (23), Expect = 0.053
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 1093 cttgacgtttccggcctccttgatggcgtcgacga 1127
|||||| ||||||||||||||||| || |||||||
Sbjct: 7620630 cttgacatttccggcctccttgatcgcctcgacga 7620664
>gb|CH401164.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000001
genomic scaffold, whole genome shotgun sequence
Length = 11616395
Score = 149 bits (75), Expect = 5e-033
Identities = 308/386 (79%), Gaps = 6/386 (1%)
Strand = Plus / Plus
Query: 1024 gatggacttggccggctccacgatgcccgtgcggtccacgtccaggccgaactccgacgg 1083
||||||| ||||||||||||| ||||||| ||||| |||||| ||||||||||||||
Sbjct: 329637 gatggacctggccggctccaccgcgcccgtgtggtccgggtccagcccgaactccgacgg 329696
Query: 1084 gaagaacctcttgacgtttcc------ggcctccttgatggcgtcgacgagccggctctg 1137
| ||||||| ||||| || | |||||||||||||| ||| |||| | ||||
Sbjct: 329697 caggaacctccgcacgttgccaccgccgccctccttgatggcggcgatgagcttggtctg 329756
Query: 1138 gtcggcgatctgcatcgatccgagcacggagatgaccacgtccgcgcccttcaccgcgct 1197
|||||||||||||| || || ||| ||||||||| ||||| ||| | || |||||
Sbjct: 329757 gtcggcgatctgcagcgcgcccagcgtggagatgacgacgtcggcgtcgcggacggcgct 329816
Query: 1198 caccaggctagcctggtcgtacaggtcgcccttgaggagcgtcacgccggcgtcctggaa 1257
| |||||| || |||||||| |||||||| | |||||| || ||||||||||| ||||
Sbjct: 329817 gagcaggctggcgtggtcgtagaggtcgccgtggaggagggtgacgccggcgtcgcggaa 329876
Query: 1258 gctcttgagcagcgccgctttggccgggtcggacggcgccgtgtccctgacgagcgccga 1317
||||| ||| ||| || ||||| |||||||| || | |||||||||||| || |
Sbjct: 329877 gctctggagaagctgcgacttggcggggtcggagggggagaggtccctgacgagggcggt 329936
Query: 1318 ggtggggtggcccagccgcgcgctcgccgccacgacgtgcctgcccaggtaccccgtgcc 1377
|||||| || |||||||||||||| ||| |||||||||| ||| | ||||||||||||
Sbjct: 329937 ggtgggatgacccagccgcgcgctggccaagacgacgtgccggccgatgtaccccgtgcc 329996
Query: 1378 gccgaccaccaggatcttgctcttct 1403
||| |||||||||||| |||||||||
Sbjct: 329997 gcccaccaccaggatcctgctcttct 330022
Score = 143 bits (72), Expect = 3e-031
Identities = 243/300 (81%)
Strand = Plus / Plus
Query: 1103 ccggcctccttgatggcgtcgacgagccggctctggtcggcgatctgcatcgatccgagc 1162
|||||||||||||||||||||| ||||| | ||||||||| || ||| ||| | | |
Sbjct: 325155 ccggcctccttgatggcgtcgatgagcctggtctggtcggggacctgggtcgcgcgcacc 325214
Query: 1163 acggagatgaccacgtccgcgcccttcaccgcgctcaccaggctagcctggtcgtacagg 1222
|||||||||| ||||| ||| | || |||| || |||||| || ||||||| |||
Sbjct: 325215 gcggagatgacgacgtcggcgtcgcggacggcgcgcagcaggctggcgtggtcgtggagg 325274
Query: 1223 tcgcccttgaggagcgtcacgccggcgtcctggaagctcttgagcagcgccgctttggcc 1282
||||| | |||||| || ||||||||||| ||||| | | ||||||| ||| |||||
Sbjct: 325275 tcgccgtggaggagggtgacgccggcgtcgcggaaggtgtggagcagctgcgccttggcg 325334
Query: 1283 gggtcggacggcgccgtgtccctgacgagcgccgaggtggggtggcccagccgcgcgctc 1342
|||||||| || || |||||||||||| || | |||||| || |||||||||||||||
Sbjct: 325335 gggtcggagggggcgaggtccctgacgagggcggtggtgggatgacccagccgcgcgctc 325394
Query: 1343 gccgccacgacgtgcctgcccaggtaccccgtgccgccgaccaccaggatcttgctcttc 1402
|| || ||||| |||| ||| | |||||||||||||||||||||||||||| ||||||||
Sbjct: 325395 gcggcaacgacatgccggccgatgtaccccgtgccgccgaccaccaggatcctgctcttc 325454
Score = 123 bits (62), Expect = 3e-025
Identities = 185/226 (81%)
Strand = Plus / Plus
Query: 653 tggatctgcttgagcacggcttcctccggcacgtactcccgccggaacgtcttgccggtc 712
||||| |||||||||||||| ||||| ||||||||| ||| | | | |||| || |||
Sbjct: 329257 tggatttgcttgagcacggcgtcctcgggcacgtacaccctctccagcttcttccccgtc 329316
Query: 713 ttcttctcccacagcgacagcagctcgttgtgcgacagcgtgttggccggcggcttgatg 772
|||||||||||||||| || |||||| | |||||||| || ||| || |||| |||
Sbjct: 329317 ttcttctcccacagcgccaccagctcctcgtgcgacaccgcgttcttcgccggccgtatg 329376
Query: 773 tacagcaccttgttctccgcgcgcgggtcgtcggccgccagcaccgtgtacgtggcgatg 832
| || | |||||||||||| ||||| || | |||||||||||||||||||| |||||
Sbjct: 329377 ttcaccgtcttgttctccgcccgcggatccaccgccgccagcaccgtgtacgtcccgatg 329436
Query: 833 tcgccctcctccacgaacaccgccttggtgtcgccgtcgccgagga 878
|| |||||||||||||||||| |||||||| | ||||| |||||||
Sbjct: 329437 tccccctcctccacgaacaccaccttggtggctccgtccccgagga 329482
Score = 115 bits (58), Expect = 7e-023
Identities = 130/154 (84%)
Strand = Plus / Plus
Query: 710 gtcttcttctcccacagcgacagcagctcgttgtgcgacagcgtgttggccggcggcttg 769
|||||||||||||||| || |||||||| |||||||| ||||| |||||||||
Sbjct: 324750 gtcttcttctcccacatgctcaccagctcgtcgtgcgacatggtgttcgccggcggccgt 324809
Query: 770 atgtacagcaccttgttctccgcgcgcgggtcgtcggccgccagcaccgtgtacgtggcg 829
|||| |||| |||||||||||| || || || | ||||||||||||||||||||| ||
Sbjct: 324810 atgtgcagcgtcttgttctccgcccggggatccaccgccgccagcaccgtgtacgtgccg 324869
Query: 830 atgtcgccctcctccacgaacaccgccttggtgt 863
||||| |||||||||||||||||| |||||||||
Sbjct: 324870 atgtccccctcctccacgaacaccaccttggtgt 324903
Score = 48.1 bits (24), Expect = 0.013
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 496 gttgaggtactcgtcgacggtggtgtacttgacatccggg 535
||||||||| || |||||||||||||||| ||| ||||||
Sbjct: 328986 gttgaggtagtcatcgacggtggtgtactggacgtccggg 329025
Score = 46.1 bits (23), Expect = 0.053
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 1093 cttgacgtttccggcctccttgatggcgtcgacga 1127
|||||| ||||||||||||||||| || |||||||
Sbjct: 7697598 cttgacatttccggcctccttgatcgcctcgacga 7697632
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 149 bits (75), Expect = 5e-033
Identities = 308/386 (79%), Gaps = 6/386 (1%)
Strand = Plus / Plus
Query: 1024 gatggacttggccggctccacgatgcccgtgcggtccacgtccaggccgaactccgacgg 1083
||||||| ||||||||||||| ||||||| ||||| |||||| ||||||||||||||
Sbjct: 329637 gatggacctggccggctccaccgcgcccgtgtggtccgggtccagcccgaactccgacgg 329696
Query: 1084 gaagaacctcttgacgtttcc------ggcctccttgatggcgtcgacgagccggctctg 1137
| ||||||| ||||| || | |||||||||||||| ||| |||| | ||||
Sbjct: 329697 caggaacctccgcacgttgccaccgccgccctccttgatggcggcgatgagcttggtctg 329756
Query: 1138 gtcggcgatctgcatcgatccgagcacggagatgaccacgtccgcgcccttcaccgcgct 1197
|||||||||||||| || || ||| ||||||||| ||||| ||| | || |||||
Sbjct: 329757 gtcggcgatctgcagcgcgcccagcgtggagatgacgacgtcggcgtcgcggacggcgct 329816
Query: 1198 caccaggctagcctggtcgtacaggtcgcccttgaggagcgtcacgccggcgtcctggaa 1257
| |||||| || |||||||| |||||||| | |||||| || ||||||||||| ||||
Sbjct: 329817 gagcaggctggcgtggtcgtagaggtcgccgtggaggagggtgacgccggcgtcgcggaa 329876
Query: 1258 gctcttgagcagcgccgctttggccgggtcggacggcgccgtgtccctgacgagcgccga 1317
||||| ||| ||| || ||||| |||||||| || | |||||||||||| || |
Sbjct: 329877 gctctggagaagctgcgacttggcggggtcggagggggagaggtccctgacgagggcggt 329936
Query: 1318 ggtggggtggcccagccgcgcgctcgccgccacgacgtgcctgcccaggtaccccgtgcc 1377
|||||| || |||||||||||||| ||| |||||||||| ||| | ||||||||||||
Sbjct: 329937 ggtgggatgacccagccgcgcgctggccaagacgacgtgccggccgatgtaccccgtgcc 329996
Query: 1378 gccgaccaccaggatcttgctcttct 1403
||| |||||||||||| |||||||||
Sbjct: 329997 gcccaccaccaggatcctgctcttct 330022
Score = 143 bits (72), Expect = 3e-031
Identities = 243/300 (81%)
Strand = Plus / Plus
Query: 1103 ccggcctccttgatggcgtcgacgagccggctctggtcggcgatctgcatcgatccgagc 1162
|||||||||||||||||||||| ||||| | ||||||||| || ||| ||| | | |
Sbjct: 325155 ccggcctccttgatggcgtcgatgagcctggtctggtcggggacctgggtcgcgcgcacc 325214
Query: 1163 acggagatgaccacgtccgcgcccttcaccgcgctcaccaggctagcctggtcgtacagg 1222
|||||||||| ||||| ||| | || |||| || |||||| || ||||||| |||
Sbjct: 325215 gcggagatgacgacgtcggcgtcgcggacggcgcgcagcaggctggcgtggtcgtggagg 325274
Query: 1223 tcgcccttgaggagcgtcacgccggcgtcctggaagctcttgagcagcgccgctttggcc 1282
||||| | |||||| || ||||||||||| ||||| | | ||||||| ||| |||||
Sbjct: 325275 tcgccgtggaggagggtgacgccggcgtcgcggaaggtgtggagcagctgcgccttggcg 325334
Query: 1283 gggtcggacggcgccgtgtccctgacgagcgccgaggtggggtggcccagccgcgcgctc 1342
|||||||| || || |||||||||||| || | |||||| || |||||||||||||||
Sbjct: 325335 gggtcggagggggcgaggtccctgacgagggcggtggtgggatgacccagccgcgcgctc 325394
Query: 1343 gccgccacgacgtgcctgcccaggtaccccgtgccgccgaccaccaggatcttgctcttc 1402
|| || ||||| |||| ||| | |||||||||||||||||||||||||||| ||||||||
Sbjct: 325395 gcggcaacgacatgccggccgatgtaccccgtgccgccgaccaccaggatcctgctcttc 325454
Score = 123 bits (62), Expect = 3e-025
Identities = 185/226 (81%)
Strand = Plus / Plus
Query: 653 tggatctgcttgagcacggcttcctccggcacgtactcccgccggaacgtcttgccggtc 712
||||| |||||||||||||| ||||| ||||||||| ||| | | | |||| || |||
Sbjct: 329257 tggatttgcttgagcacggcgtcctcgggcacgtacaccctctccagcttcttccccgtc 329316
Query: 713 ttcttctcccacagcgacagcagctcgttgtgcgacagcgtgttggccggcggcttgatg 772
|||||||||||||||| || |||||| | |||||||| || ||| || |||| |||
Sbjct: 329317 ttcttctcccacagcgccaccagctcctcgtgcgacaccgcgttcttcgccggccgtatg 329376
Query: 773 tacagcaccttgttctccgcgcgcgggtcgtcggccgccagcaccgtgtacgtggcgatg 832
| || | |||||||||||| ||||| || | |||||||||||||||||||| |||||
Sbjct: 329377 ttcaccgtcttgttctccgcccgcggatccaccgccgccagcaccgtgtacgtcccgatg 329436
Query: 833 tcgccctcctccacgaacaccgccttggtgtcgccgtcgccgagga 878
|| |||||||||||||||||| |||||||| | ||||| |||||||
Sbjct: 329437 tccccctcctccacgaacaccaccttggtggctccgtccccgagga 329482
Score = 115 bits (58), Expect = 7e-023
Identities = 130/154 (84%)
Strand = Plus / Plus
Query: 710 gtcttcttctcccacagcgacagcagctcgttgtgcgacagcgtgttggccggcggcttg 769
|||||||||||||||| || |||||||| |||||||| ||||| |||||||||
Sbjct: 324750 gtcttcttctcccacatgctcaccagctcgtcgtgcgacatggtgttcgccggcggccgt 324809
Query: 770 atgtacagcaccttgttctccgcgcgcgggtcgtcggccgccagcaccgtgtacgtggcg 829
|||| |||| |||||||||||| || || || | ||||||||||||||||||||| ||
Sbjct: 324810 atgtgcagcgtcttgttctccgcccggggatccaccgccgccagcaccgtgtacgtgccg 324869
Query: 830 atgtcgccctcctccacgaacaccgccttggtgt 863
||||| |||||||||||||||||| |||||||||
Sbjct: 324870 atgtccccctcctccacgaacaccaccttggtgt 324903
Score = 48.1 bits (24), Expect = 0.013
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 496 gttgaggtactcgtcgacggtggtgtacttgacatccggg 535
||||||||| || |||||||||||||||| ||| ||||||
Sbjct: 328986 gttgaggtagtcatcgacggtggtgtactggacgtccggg 329025
Score = 46.1 bits (23), Expect = 0.053
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 1093 cttgacgtttccggcctccttgatggcgtcgacga 1127
|||||| ||||||||||||||||| || |||||||
Sbjct: 7697598 cttgacatttccggcctccttgatcgcctcgacga 7697632
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
complete sequence
Length = 43261740
Score = 149 bits (75), Expect = 5e-033
Identities = 308/386 (79%), Gaps = 6/386 (1%)
Strand = Plus / Plus
Query: 1024 gatggacttggccggctccacgatgcccgtgcggtccacgtccaggccgaactccgacgg 1083
||||||| ||||||||||||| ||||||| ||||| |||||| ||||||||||||||
Sbjct: 326991 gatggacctggccggctccaccgcgcccgtgtggtccgggtccagcccgaactccgacgg 327050
Query: 1084 gaagaacctcttgacgtttcc------ggcctccttgatggcgtcgacgagccggctctg 1137
| ||||||| ||||| || | |||||||||||||| ||| |||| | ||||
Sbjct: 327051 caggaacctccgcacgttgccaccgccgccctccttgatggcggcgatgagcttggtctg 327110
Query: 1138 gtcggcgatctgcatcgatccgagcacggagatgaccacgtccgcgcccttcaccgcgct 1197
|||||||||||||| || || ||| ||||||||| ||||| ||| | || |||||
Sbjct: 327111 gtcggcgatctgcagcgcgcccagcgtggagatgacgacgtcggcgtcgcggacggcgct 327170
Query: 1198 caccaggctagcctggtcgtacaggtcgcccttgaggagcgtcacgccggcgtcctggaa 1257
| |||||| || |||||||| |||||||| | |||||| || ||||||||||| ||||
Sbjct: 327171 gagcaggctggcgtggtcgtagaggtcgccgtggaggagggtgacgccggcgtcgcggaa 327230
Query: 1258 gctcttgagcagcgccgctttggccgggtcggacggcgccgtgtccctgacgagcgccga 1317
||||| ||| ||| || ||||| |||||||| || | |||||||||||| || |
Sbjct: 327231 gctctggagaagctgcgacttggcggggtcggagggggagaggtccctgacgagggcggt 327290
Query: 1318 ggtggggtggcccagccgcgcgctcgccgccacgacgtgcctgcccaggtaccccgtgcc 1377
|||||| || |||||||||||||| ||| |||||||||| ||| | ||||||||||||
Sbjct: 327291 ggtgggatgacccagccgcgcgctggccaagacgacgtgccggccgatgtaccccgtgcc 327350
Query: 1378 gccgaccaccaggatcttgctcttct 1403
||| |||||||||||| |||||||||
Sbjct: 327351 gcccaccaccaggatcctgctcttct 327376
Score = 143 bits (72), Expect = 3e-031
Identities = 243/300 (81%)
Strand = Plus / Plus
Query: 1103 ccggcctccttgatggcgtcgacgagccggctctggtcggcgatctgcatcgatccgagc 1162
|||||||||||||||||||||| ||||| | ||||||||| || ||| ||| | | |
Sbjct: 322518 ccggcctccttgatggcgtcgatgagcctggtctggtcggggacctgggtcgcgcgcacc 322577
Query: 1163 acggagatgaccacgtccgcgcccttcaccgcgctcaccaggctagcctggtcgtacagg 1222
|||||||||| ||||| ||| | || |||| || |||||| || ||||||| |||
Sbjct: 322578 gcggagatgacgacgtcggcgtcgcggacggcgcgcagcaggctggcgtggtcgtggagg 322637
Query: 1223 tcgcccttgaggagcgtcacgccggcgtcctggaagctcttgagcagcgccgctttggcc 1282
||||| | |||||| || ||||||||||| ||||| | | ||||||| ||| |||||
Sbjct: 322638 tcgccgtggaggagggtgacgccggcgtcgcggaaggtgtggagcagctgcgccttggcg 322697
Query: 1283 gggtcggacggcgccgtgtccctgacgagcgccgaggtggggtggcccagccgcgcgctc 1342
|||||||| || || |||||||||||| || | |||||| || |||||||||||||||
Sbjct: 322698 gggtcggagggggcgaggtccctgacgagggcggtggtgggatgacccagccgcgcgctc 322757
Query: 1343 gccgccacgacgtgcctgcccaggtaccccgtgccgccgaccaccaggatcttgctcttc 1402
|| || ||||| |||| ||| | |||||||||||||||||||||||||||| ||||||||
Sbjct: 322758 gcggcaacgacatgccggccgatgtaccccgtgccgccgaccaccaggatcctgctcttc 322817
Score = 123 bits (62), Expect = 3e-025
Identities = 185/226 (81%)
Strand = Plus / Plus
Query: 653 tggatctgcttgagcacggcttcctccggcacgtactcccgccggaacgtcttgccggtc 712
||||| |||||||||||||| ||||| ||||||||| ||| | | | |||| || |||
Sbjct: 326620 tggatttgcttgagcacggcgtcctcgggcacgtacaccctctccagcttcttccccgtc 326679
Query: 713 ttcttctcccacagcgacagcagctcgttgtgcgacagcgtgttggccggcggcttgatg 772
|||||||||||||||| || |||||| | |||||||| || ||| || |||| |||
Sbjct: 326680 ttcttctcccacagcgccaccagctcctcgtgcgacaccgcgttcttcgccggccgtatg 326739
Query: 773 tacagcaccttgttctccgcgcgcgggtcgtcggccgccagcaccgtgtacgtggcgatg 832
| || | |||||||||||| ||||| || | |||||||||||||||||||| |||||
Sbjct: 326740 ttcaccgtcttgttctccgcccgcggatccaccgccgccagcaccgtgtacgtcccgatg 326799
Query: 833 tcgccctcctccacgaacaccgccttggtgtcgccgtcgccgagga 878
|| |||||||||||||||||| |||||||| | ||||| |||||||
Sbjct: 326800 tccccctcctccacgaacaccaccttggtggctccgtccccgagga 326845
Score = 115 bits (58), Expect = 7e-023
Identities = 130/154 (84%)
Strand = Plus / Plus
Query: 710 gtcttcttctcccacagcgacagcagctcgttgtgcgacagcgtgttggccggcggcttg 769
|||||||||||||||| || |||||||| |||||||| ||||| |||||||||
Sbjct: 322113 gtcttcttctcccacatgctcaccagctcgtcgtgcgacatggtgttcgccggcggccgt 322172
Query: 770 atgtacagcaccttgttctccgcgcgcgggtcgtcggccgccagcaccgtgtacgtggcg 829
|||| |||| |||||||||||| || || || | ||||||||||||||||||||| ||
Sbjct: 322173 atgtgcagcgtcttgttctccgcccggggatccaccgccgccagcaccgtgtacgtgccg 322232
Query: 830 atgtcgccctcctccacgaacaccgccttggtgt 863
||||| |||||||||||||||||| |||||||||
Sbjct: 322233 atgtccccctcctccacgaacaccaccttggtgt 322266
Score = 48.1 bits (24), Expect = 0.013
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 496 gttgaggtactcgtcgacggtggtgtacttgacatccggg 535
||||||||| || |||||||||||||||| ||| ||||||
Sbjct: 326349 gttgaggtagtcatcgacggtggtgtactggacgtccggg 326388
Score = 46.1 bits (23), Expect = 0.053
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 1093 cttgacgtttccggcctccttgatggcgtcgacga 1127
|||||| ||||||||||||||||| || |||||||
Sbjct: 7623008 cttgacatttccggcctccttgatcgcctcgacga 7623042
>dbj|AK061325.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-G05, full
insert sequence
Length = 1265
Score = 143 bits (72), Expect = 3e-031
Identities = 243/300 (81%)
Strand = Plus / Minus
Query: 1103 ccggcctccttgatggcgtcgacgagccggctctggtcggcgatctgcatcgatccgagc 1162
|||||||||||||||||||||| ||||| | ||||||||| || ||| ||| | | |
Sbjct: 395 ccggcctccttgatggcgtcgatgagcctggtctggtcggggacctgggtcgcgcgcacc 336
Query: 1163 acggagatgaccacgtccgcgcccttcaccgcgctcaccaggctagcctggtcgtacagg 1222
|||||||||| ||||| ||| | || |||| || |||||| || ||||||| |||
Sbjct: 335 gcggagatgacgacgtcggcgtcgcggacggcgcgcagcaggctggcgtggtcgtggagg 276
Query: 1223 tcgcccttgaggagcgtcacgccggcgtcctggaagctcttgagcagcgccgctttggcc 1282
||||| | |||||| || ||||||||||| ||||| | | ||||||| ||| |||||
Sbjct: 275 tcgccgtggaggagggtgacgccggcgtcgcggaaggtgtggagcagctgcgccttggcg 216
Query: 1283 gggtcggacggcgccgtgtccctgacgagcgccgaggtggggtggcccagccgcgcgctc 1342
|||||||| || || |||||||||||| || | |||||| || |||||||||||||||
Sbjct: 215 gggtcggagggggcgaggtccctgacgagggcggtggtgggatgacccagccgcgcgctc 156
Query: 1343 gccgccacgacgtgcctgcccaggtaccccgtgccgccgaccaccaggatcttgctcttc 1402
|| || ||||| |||| ||| | |||||||||||||||||||||||||||| ||||||||
Sbjct: 155 gcggcaacgacatgccggccgatgtaccccgtgccgccgaccaccaggatcctgctcttc 96
Score = 115 bits (58), Expect = 7e-023
Identities = 130/154 (84%)
Strand = Plus / Minus
Query: 710 gtcttcttctcccacagcgacagcagctcgttgtgcgacagcgtgttggccggcggcttg 769
|||||||||||||||| || |||||||| |||||||| ||||| |||||||||
Sbjct: 800 gtcttcttctcccacatgctcaccagctcgtcgtgcgacatggtgttcgccggcggccgt 741
Query: 770 atgtacagcaccttgttctccgcgcgcgggtcgtcggccgccagcaccgtgtacgtggcg 829
|||| |||| |||||||||||| || || || | ||||||||||||||||||||| ||
Sbjct: 740 atgtgcagcgtcttgttctccgcccggggatccaccgccgccagcaccgtgtacgtgccg 681
Query: 830 atgtcgccctcctccacgaacaccgccttggtgt 863
||||| |||||||||||||||||| |||||||||
Sbjct: 680 atgtccccctcctccacgaacaccaccttggtgt 647
>dbj|AK098946.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013045H04, full
insert sequence
Length = 1256
Score = 143 bits (72), Expect = 3e-031
Identities = 243/300 (81%)
Strand = Plus / Minus
Query: 1103 ccggcctccttgatggcgtcgacgagccggctctggtcggcgatctgcatcgatccgagc 1162
|||||||||||||||||||||| ||||| | ||||||||| || ||| ||| | | |
Sbjct: 407 ccggcctccttgatggcgtcgatgagcctggtctggtcggggacctgggtcgcgcgcacc 348
Query: 1163 acggagatgaccacgtccgcgcccttcaccgcgctcaccaggctagcctggtcgtacagg 1222
|||||||||| ||||| ||| | || |||| || |||||| || ||||||| |||
Sbjct: 347 gcggagatgacgacgtcggcgtcgcggacggcgcgcagcaggctggcgtggtcgtggagg 288
Query: 1223 tcgcccttgaggagcgtcacgccggcgtcctggaagctcttgagcagcgccgctttggcc 1282
||||| | |||||| || ||||||||||| ||||| | | ||||||| ||| |||||
Sbjct: 287 tcgccgtggaggagggtgacgccggcgtcgcggaaggtgtggagcagctgcgccttggcg 228
Query: 1283 gggtcggacggcgccgtgtccctgacgagcgccgaggtggggtggcccagccgcgcgctc 1342
|||||||| || || |||||||||||| || | |||||| || |||||||||||||||
Sbjct: 227 gggtcggagggggcgaggtccctgacgagggcggtggtgggatgacccagccgcgcgctc 168
Query: 1343 gccgccacgacgtgcctgcccaggtaccccgtgccgccgaccaccaggatcttgctcttc 1402
|| || ||||| |||| ||| | |||||||||||||||||||||||||||| ||||||||
Sbjct: 167 gcggcaacgacatgccggccgatgtaccccgtgccgccgaccaccaggatcctgctcttc 108
Score = 115 bits (58), Expect = 7e-023
Identities = 130/154 (84%)
Strand = Plus / Minus
Query: 710 gtcttcttctcccacagcgacagcagctcgttgtgcgacagcgtgttggccggcggcttg 769
|||||||||||||||| || |||||||| |||||||| ||||| |||||||||
Sbjct: 812 gtcttcttctcccacatgctcaccagctcgtcgtgcgacatggtgttcgccggcggccgt 753
Query: 770 atgtacagcaccttgttctccgcgcgcgggtcgtcggccgccagcaccgtgtacgtggcg 829
|||| |||| |||||||||||| || || || | ||||||||||||||||||||| ||
Sbjct: 752 atgtgcagcgtcttgttctccgcccggggatccaccgccgccagcaccgtgtacgtgccg 693
Query: 830 atgtcgccctcctccacgaacaccgccttggtgt 863
||||| |||||||||||||||||| |||||||||
Sbjct: 692 atgtccccctcctccacgaacaccaccttggtgt 659
>dbj|AK104189.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-C06, full
insert sequence
Length = 1259
Score = 143 bits (72), Expect = 3e-031
Identities = 243/300 (81%)
Strand = Plus / Minus
Query: 1103 ccggcctccttgatggcgtcgacgagccggctctggtcggcgatctgcatcgatccgagc 1162
|||||||||||||||||||||| ||||| | ||||||||| || ||| ||| | | |
Sbjct: 395 ccggcctccttgatggcgtcgatgagcctggtctggtcggggacctgggtcgcgcgcacc 336
Query: 1163 acggagatgaccacgtccgcgcccttcaccgcgctcaccaggctagcctggtcgtacagg 1222
|||||||||| ||||| ||| | || |||| || |||||| || ||||||| |||
Sbjct: 335 gcggagatgacgacgtcggcgtcgcggacggcgcgcagcaggctggcgtggtcgtggagg 276
Query: 1223 tcgcccttgaggagcgtcacgccggcgtcctggaagctcttgagcagcgccgctttggcc 1282
||||| | |||||| || ||||||||||| ||||| | | ||||||| ||| |||||
Sbjct: 275 tcgccgtggaggagggtgacgccggcgtcgcggaaggtgtggagcagctgcgccttggcg 216
Query: 1283 gggtcggacggcgccgtgtccctgacgagcgccgaggtggggtggcccagccgcgcgctc 1342
|||||||| || || |||||||||||| || | |||||| || |||||||||||||||
Sbjct: 215 gggtcggagggggcgaggtccctgacgagggcggtggtgggatgacccagccgcgcgctc 156
Query: 1343 gccgccacgacgtgcctgcccaggtaccccgtgccgccgaccaccaggatcttgctcttc 1402
|| || ||||| |||| ||| | |||||||||||||||||||||||||||| ||||||||
Sbjct: 155 gcggcaacgacatgccggccgatgtaccccgtgccgccgaccaccaggatcctgctcttc 96
Score = 115 bits (58), Expect = 7e-023
Identities = 130/154 (84%)
Strand = Plus / Minus
Query: 710 gtcttcttctcccacagcgacagcagctcgttgtgcgacagcgtgttggccggcggcttg 769
|||||||||||||||| || |||||||| |||||||| ||||| |||||||||
Sbjct: 800 gtcttcttctcccacatgctcaccagctcgtcgtgcgacatggtgttcgccggcggccgt 741
Query: 770 atgtacagcaccttgttctccgcgcgcgggtcgtcggccgccagcaccgtgtacgtggcg 829
|||| |||| |||||||||||| || || || | ||||||||||||||||||||| ||
Sbjct: 740 atgtgcagcgtcttgttctccgcccggggatccaccgccgccagcaccgtgtacgtgccg 681
Query: 830 atgtcgccctcctccacgaacaccgccttggtgt 863
||||| |||||||||||||||||| |||||||||
Sbjct: 680 atgtccccctcctccacgaacaccaccttggtgt 647
>dbj|AK104238.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-307-H12, full
insert sequence
Length = 1260
Score = 143 bits (72), Expect = 3e-031
Identities = 243/300 (81%)
Strand = Plus / Minus
Query: 1103 ccggcctccttgatggcgtcgacgagccggctctggtcggcgatctgcatcgatccgagc 1162
|||||||||||||||||||||| ||||| | ||||||||| || ||| ||| | | |
Sbjct: 395 ccggcctccttgatggcgtcgatgagcctggtctggtcggggacctgggtcgcgcgcacc 336
Query: 1163 acggagatgaccacgtccgcgcccttcaccgcgctcaccaggctagcctggtcgtacagg 1222
|||||||||| ||||| ||| | || |||| || |||||| || ||||||| |||
Sbjct: 335 gcggagatgacgacgtcggcgtcgcggacggcgcgcagcaggctggcgtggtcgtggagg 276
Query: 1223 tcgcccttgaggagcgtcacgccggcgtcctggaagctcttgagcagcgccgctttggcc 1282
||||| | |||||| || ||||||||||| ||||| | | ||||||| ||| |||||
Sbjct: 275 tcgccgtggaggagggtgacgccggcgtcgcggaaggtgtggagcagctgcgccttggcg 216
Query: 1283 gggtcggacggcgccgtgtccctgacgagcgccgaggtggggtggcccagccgcgcgctc 1342
|||||||| || || |||||||||||| || | |||||| || |||||||||||||||
Sbjct: 215 gggtcggagggggcgaggtccctgacgagggcggtggtgggatgacccagccgcgcgctc 156
Query: 1343 gccgccacgacgtgcctgcccaggtaccccgtgccgccgaccaccaggatcttgctcttc 1402
|| || ||||| |||| ||| | |||||||||||||||||||||||||||| ||||||||
Sbjct: 155 gcggcaacgacatgccggccgatgtaccccgtgccgccgaccaccaggatcctgctcttc 96
Score = 115 bits (58), Expect = 7e-023
Identities = 130/154 (84%)
Strand = Plus / Minus
Query: 710 gtcttcttctcccacagcgacagcagctcgttgtgcgacagcgtgttggccggcggcttg 769
|||||||||||||||| || |||||||| |||||||| ||||| |||||||||
Sbjct: 800 gtcttcttctcccacatgctcaccagctcgtcgtgcgacatggtgttcgccggcggccgt 741
Query: 770 atgtacagcaccttgttctccgcgcgcgggtcgtcggccgccagcaccgtgtacgtggcg 829
|||| |||| |||||||||||| || || || | ||||||||||||||||||||| ||
Sbjct: 740 atgtgcagcgtcttgttctccgcccggggatccaccgccgccagcaccgtgtacgtgccg 681
Query: 830 atgtcgccctcctccacgaacaccgccttggtgt 863
||||| |||||||||||||||||| |||||||||
Sbjct: 680 atgtccccctcctccacgaacaccaccttggtgt 647
>dbj|AK104669.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-312-B02, full
insert sequence
Length = 1256
Score = 143 bits (72), Expect = 3e-031
Identities = 243/300 (81%)
Strand = Plus / Minus
Query: 1103 ccggcctccttgatggcgtcgacgagccggctctggtcggcgatctgcatcgatccgagc 1162
|||||||||||||||||||||| ||||| | ||||||||| || ||| ||| | | |
Sbjct: 391 ccggcctccttgatggcgtcgatgagcctggtctggtcggggacctgggtcgcgcgcacc 332
Query: 1163 acggagatgaccacgtccgcgcccttcaccgcgctcaccaggctagcctggtcgtacagg 1222
|||||||||| ||||| ||| | || |||| || |||||| || ||||||| |||
Sbjct: 331 gcggagatgacgacgtcggcgtcgcggacggcgcgcagcaggctggcgtggtcgtggagg 272
Query: 1223 tcgcccttgaggagcgtcacgccggcgtcctggaagctcttgagcagcgccgctttggcc 1282
||||| | |||||| || ||||||||||| ||||| | | ||||||| ||| |||||
Sbjct: 271 tcgccgtggaggagggtgacgccggcgtcgcggaaggtgtggagcagctgcgccttggcg 212
Query: 1283 gggtcggacggcgccgtgtccctgacgagcgccgaggtggggtggcccagccgcgcgctc 1342
|||||||| || || |||||||||||| || | |||||| || |||||||||||||||
Sbjct: 211 gggtcggagggggcgaggtccctgacgagggcggtggtgggatgacccagccgcgcgctc 152
Query: 1343 gccgccacgacgtgcctgcccaggtaccccgtgccgccgaccaccaggatcttgctcttc 1402
|| || ||||| |||| ||| | |||||||||||||||||||||||||||| ||||||||
Sbjct: 151 gcggcaacgacatgccggccgatgtaccccgtgccgccgaccaccaggatcctgctcttc 92
Score = 115 bits (58), Expect = 7e-023
Identities = 130/154 (84%)
Strand = Plus / Minus
Query: 710 gtcttcttctcccacagcgacagcagctcgttgtgcgacagcgtgttggccggcggcttg 769
|||||||||||||||| || |||||||| |||||||| ||||| |||||||||
Sbjct: 796 gtcttcttctcccacatgctcaccagctcgtcgtgcgacatggtgttcgccggcggccgt 737
Query: 770 atgtacagcaccttgttctccgcgcgcgggtcgtcggccgccagcaccgtgtacgtggcg 829
|||| |||| |||||||||||| || || || | ||||||||||||||||||||| ||
Sbjct: 736 atgtgcagcgtcttgttctccgcccggggatccaccgccgccagcaccgtgtacgtgccg 677
Query: 830 atgtcgccctcctccacgaacaccgccttggtgt 863
||||| |||||||||||||||||| |||||||||
Sbjct: 676 atgtccccctcctccacgaacaccaccttggtgt 643
>dbj|AK104735.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-D01, full
insert sequence
Length = 1260
Score = 143 bits (72), Expect = 3e-031
Identities = 243/300 (81%)
Strand = Plus / Minus
Query: 1103 ccggcctccttgatggcgtcgacgagccggctctggtcggcgatctgcatcgatccgagc 1162
|||||||||||||||||||||| ||||| | ||||||||| || ||| ||| | | |
Sbjct: 395 ccggcctccttgatggcgtcgatgagcctggtctggtcggggacctgggtcgcgcgcacc 336
Query: 1163 acggagatgaccacgtccgcgcccttcaccgcgctcaccaggctagcctggtcgtacagg 1222
|||||||||| ||||| ||| | || |||| || |||||| || ||||||| |||
Sbjct: 335 gcggagatgacgacgtcggcgtcgcggacggcgcgcagcaggctggcgtggtcgtggagg 276
Query: 1223 tcgcccttgaggagcgtcacgccggcgtcctggaagctcttgagcagcgccgctttggcc 1282
||||| | |||||| || ||||||||||| ||||| | | ||||||| ||| |||||
Sbjct: 275 tcgccgtggaggagggtgacgccggcgtcgcggaaggtgtggagcagctgcgccttggcg 216
Query: 1283 gggtcggacggcgccgtgtccctgacgagcgccgaggtggggtggcccagccgcgcgctc 1342
|||||||| || || |||||||||||| || | |||||| || |||||||||||||||
Sbjct: 215 gggtcggagggggcgaggtccctgacgagggcggtggtgggatgacccagccgcgcgctc 156
Query: 1343 gccgccacgacgtgcctgcccaggtaccccgtgccgccgaccaccaggatcttgctcttc 1402
|| || ||||| |||| ||| | |||||||||||||||||||||||||||| ||||||||
Sbjct: 155 gcggcaacgacatgccggccgatgtaccccgtgccgccgaccaccaggatcctgctcttc 96
Score = 115 bits (58), Expect = 7e-023
Identities = 130/154 (84%)
Strand = Plus / Minus
Query: 710 gtcttcttctcccacagcgacagcagctcgttgtgcgacagcgtgttggccggcggcttg 769
|||||||||||||||| || |||||||| |||||||| ||||| |||||||||
Sbjct: 800 gtcttcttctcccacatgctcaccagctcgtcgtgcgacatggtgttcgccggcggccgt 741
Query: 770 atgtacagcaccttgttctccgcgcgcgggtcgtcggccgccagcaccgtgtacgtggcg 829
|||| |||| |||||||||||| || || || | ||||||||||||||||||||| ||
Sbjct: 740 atgtgcagcgtcttgttctccgcccggggatccaccgccgccagcaccgtgtacgtgccg 681
Query: 830 atgtcgccctcctccacgaacaccgccttggtgt 863
||||| |||||||||||||||||| |||||||||
Sbjct: 680 atgtccccctcctccacgaacaccaccttggtgt 647
>dbj|AK119550.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-E04, full
insert sequence
Length = 1265
Score = 143 bits (72), Expect = 3e-031
Identities = 243/300 (81%)
Strand = Plus / Minus
Query: 1103 ccggcctccttgatggcgtcgacgagccggctctggtcggcgatctgcatcgatccgagc 1162
|||||||||||||||||||||| ||||| | ||||||||| || ||| ||| | | |
Sbjct: 395 ccggcctccttgatggcgtcgatgagcctggtctggtcggggacctgggtcgcgcgcacc 336
Query: 1163 acggagatgaccacgtccgcgcccttcaccgcgctcaccaggctagcctggtcgtacagg 1222
|||||||||| ||||| ||| | || |||| || |||||| || ||||||| |||
Sbjct: 335 gcggagatgacgacgtcggcgtcgcggacggcgcgcagcaggctggcgtggtcgtggagg 276
Query: 1223 tcgcccttgaggagcgtcacgccggcgtcctggaagctcttgagcagcgccgctttggcc 1282
||||| | |||||| || ||||||||||| ||||| | | ||||||| ||| |||||
Sbjct: 275 tcgccgtggaggagggtgacgccggcgtcgcggaaggtgtggagcagctgcgccttggcg 216
Query: 1283 gggtcggacggcgccgtgtccctgacgagcgccgaggtggggtggcccagccgcgcgctc 1342
|||||||| || || |||||||||||| || | |||||| || |||||||||||||||
Sbjct: 215 gggtcggagggggcgaggtccctgacgagggcggtggtgggatgacccagccgcgcgctc 156
Query: 1343 gccgccacgacgtgcctgcccaggtaccccgtgccgccgaccaccaggatcttgctcttc 1402
|| || ||||| |||| ||| | |||||||||||||||||||||||||||| ||||||||
Sbjct: 155 gcggcaacgacatgccggccgatgtaccccgtgccgccgaccaccaggatcctgctcttc 96
Score = 115 bits (58), Expect = 7e-023
Identities = 130/154 (84%)
Strand = Plus / Minus
Query: 710 gtcttcttctcccacagcgacagcagctcgttgtgcgacagcgtgttggccggcggcttg 769
|||||||||||||||| || |||||||| |||||||| ||||| |||||||||
Sbjct: 800 gtcttcttctcccacatgctcaccagctcgtcgtgcgacatggtgttcgccggcggccgt 741
Query: 770 atgtacagcaccttgttctccgcgcgcgggtcgtcggccgccagcaccgtgtacgtggcg 829
|||| |||| |||||||||||| || || || | ||||||||||||||||||||| ||
Sbjct: 740 atgtgcagcgtcttgttctccgcccggggatccaccgccgccagcaccgtgtacgtgccg 681
Query: 830 atgtcgccctcctccacgaacaccgccttggtgt 863
||||| |||||||||||||||||| |||||||||
Sbjct: 680 atgtccccctcctccacgaacaccaccttggtgt 647
>ref|NM_183484.2| Oryza sativa (japonica cultivar-group), mRNA
Length = 1256
Score = 143 bits (72), Expect = 3e-031
Identities = 243/300 (81%)
Strand = Plus / Minus
Query: 1103 ccggcctccttgatggcgtcgacgagccggctctggtcggcgatctgcatcgatccgagc 1162
|||||||||||||||||||||| ||||| | ||||||||| || ||| ||| | | |
Sbjct: 391 ccggcctccttgatggcgtcgatgagcctggtctggtcggggacctgggtcgcgcgcacc 332
Query: 1163 acggagatgaccacgtccgcgcccttcaccgcgctcaccaggctagcctggtcgtacagg 1222
|||||||||| ||||| ||| | || |||| || |||||| || ||||||| |||
Sbjct: 331 gcggagatgacgacgtcggcgtcgcggacggcgcgcagcaggctggcgtggtcgtggagg 272
Query: 1223 tcgcccttgaggagcgtcacgccggcgtcctggaagctcttgagcagcgccgctttggcc 1282
||||| | |||||| || ||||||||||| ||||| | | ||||||| ||| |||||
Sbjct: 271 tcgccgtggaggagggtgacgccggcgtcgcggaaggtgtggagcagctgcgccttggcg 212
Query: 1283 gggtcggacggcgccgtgtccctgacgagcgccgaggtggggtggcccagccgcgcgctc 1342
|||||||| || || |||||||||||| || | |||||| || |||||||||||||||
Sbjct: 211 gggtcggagggggcgaggtccctgacgagggcggtggtgggatgacccagccgcgcgctc 152
Query: 1343 gccgccacgacgtgcctgcccaggtaccccgtgccgccgaccaccaggatcttgctcttc 1402
|| || ||||| |||| ||| | |||||||||||||||||||||||||||| ||||||||
Sbjct: 151 gcggcaacgacatgccggccgatgtaccccgtgccgccgaccaccaggatcctgctcttc 92
Score = 115 bits (58), Expect = 7e-023
Identities = 130/154 (84%)
Strand = Plus / Minus
Query: 710 gtcttcttctcccacagcgacagcagctcgttgtgcgacagcgtgttggccggcggcttg 769
|||||||||||||||| || |||||||| |||||||| ||||| |||||||||
Sbjct: 796 gtcttcttctcccacatgctcaccagctcgtcgtgcgacatggtgttcgccggcggccgt 737
Query: 770 atgtacagcaccttgttctccgcgcgcgggtcgtcggccgccagcaccgtgtacgtggcg 829
|||| |||| |||||||||||| || || || | ||||||||||||||||||||| ||
Sbjct: 736 atgtgcagcgtcttgttctccgcccggggatccaccgccgccagcaccgtgtacgtgccg 677
Query: 830 atgtcgccctcctccacgaacaccgccttggtgt 863
||||| |||||||||||||||||| |||||||||
Sbjct: 676 atgtccccctcctccacgaacaccaccttggtgt 643
>gb|D47630.1|D47630 RICS13238A Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA, mRNA sequence
Length = 366
Score = 131 bits (66), Expect = 1e-027
Identities = 239/297 (80%)
Strand = Plus / Minus
Query: 1107 cctccttgatggcgtcgacgagccggctctggtcggcgatctgcatcgatccgagcacgg 1166
|||||||||||||| ||| |||| | |||||||||||||||||| || || ||| ||
Sbjct: 352 cctccttgatggcggcgatgagcttggtctggtcggcgatctgcagcgcgcccagcgtgg 293
Query: 1167 agatgaccacgtccgcgcccttcaccgcgctcaccaggctagcctggtcgtacaggtcgc 1226
||||||| ||||| ||| || ||||| | |||||| || |||||||| |||||||
Sbjct: 292 agatgacgacgtcggcgtngcggacggcgctgagcaggctggcgtggtcgtagaggtcgc 233
Query: 1227 ccttgaggagcgtcacgccggcgtcctggaagctcttgagcagcgccgctttggccgggt 1286
| | |||||| || ||||||||||| ||||||||| ||| ||| || ||||| ||||
Sbjct: 232 cgtggaggagggtgacgccggcgtcgcggaagctctggagaagctgcgacttggcggggt 173
Query: 1287 cggacggcgccgtgtccctgacgagcgccgaggtggggtggcccagccgcgcgctcgccg 1346
|||| || | |||||||||||| || | |||||| || |||||||||||||| |||
Sbjct: 172 cggagggggagaggtccctgacgagggcggtggtgggatgacccagccgcgcgctggcca 113
Query: 1347 ccacgacgtgcctgcccaggtaccccgtgccgccgaccaccaggatcttgctcttct 1403
|||||||||| ||| | ||||||||||||||| |||||||||||| |||||||||
Sbjct: 112 agacgacgtgccggccgatgtaccccgtgccgcccaccaccaggatcctgctcttct 56
>gb|AU095413.1|AU095413 AU095413 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R0023, mRNA sequence
Length = 536
Score = 129 bits (65), Expect = 5e-027
Identities = 191/233 (81%)
Strand = Plus / Minus
Query: 646 cgactcttggatctgcttgagcacggcttcctccggcacgtactcccgccggaacgtctt 705
|||||| ||||| |||||||||||||| ||||| ||||||||| ||| | | | ||||
Sbjct: 440 cgactcctggatttgcttgagcacggcgtcctcgggcacgtacaccctctccagcttctt 381
Query: 706 gccggtcttcttctcccacagcgacagcagctcgttgtgcgacagcgtgttggccggcgg 765
|| ||||||||||||||||||| || |||||| | |||||||| || ||| || |||
Sbjct: 380 ccccgtcttcttctcccacagcgccaccagctcctcgtgcgacaccgcgttcttcgccgg 321
Query: 766 cttgatgtacagcaccttgttctccgcgcgcgggtcgtcggccgccagcaccgtgtacgt 825
| |||| || | |||||||||||| ||||| || | ||||||||||||||||||||
Sbjct: 320 ccgtatgttcaccgtcttgttctccgcccgcggatccaccgccgccagcaccgtgtacgt 261
Query: 826 ggcgatgtcgccctcctccacgaacaccgccttggtgtcgccgtcgccgagga 878
||||||| |||||||||||||||||| |||||||| | ||||| |||||||
Sbjct: 260 cccgatgtccccctcctccacgaacaccaccttggtggctccgtccccgagga 208
Score = 56.0 bits (28), Expect = 6e-005
Identities = 52/60 (86%)
Strand = Plus / Minus
Query: 1024 gatggacttggccggctccacgatgcccgtgcggtccacgtccaggccgaactccgacgg 1083
||||||| ||||||||||||| ||||||| ||||| |||||| ||||||||||||||
Sbjct: 62 gatggacctggccggctccaccgcgcccgtgtggtccgggtccagcccgaactccgacgg 3
>gb|AU095414.1|AU095414 AU095414 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R0023, mRNA sequence
Length = 650
Score = 83.8 bits (42), Expect = 2e-013
Identities = 117/142 (82%)
Strand = Plus / Minus
Query: 608 gcgtgcccgatcgccaggatgatgttcagagggatcggcgactcttggatctgcttgagc 667
|||||| |||||| ||| | |||||||| |||||| |||||| ||||| |||||||||
Sbjct: 301 gcgtgcgcgatcgacagcacgatgttcaacgggatctccgactcctggatttgcttgagc 242
Query: 668 acggcttcctccggcacgtactcccgccggaacgtcttgccggtcttcttctcccacagc 727
||||| ||||| ||||||||| ||| | | | |||| || ||||||||||||||||||
Sbjct: 241 acggcgtcctcgggcacgtacaccctctccagcttcttccccgtcttcttctcccacagc 182
Query: 728 gacagcagctcgttgtgcgaca 749
| || |||||| | ||||||||
Sbjct: 181 gccaccagctcctcgtgcgaca 160
Score = 48.1 bits (24), Expect = 0.013
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 496 gttgaggtactcgtcgacggtggtgtacttgacatccggg 535
||||||||| || |||||||||||||||| ||| ||||||
Sbjct: 410 gttgaggtagtcatcgacggtggtgtactggacgtccggg 371
>dbj|AK109944.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-154-G12, full
insert sequence
Length = 1162
Score = 79.8 bits (40), Expect = 4e-012
Identities = 49/52 (94%)
Strand = Plus / Minus
Query: 1069 gccgaactccgacgggaagaacctcttgacgtttccggcctccttgatggcg 1120
|||||| |||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 457 gccgaaatccgacgggatgaacctcttgatgtttccggcctccttgatggcg 406
>gb|AU174013.1|AU174013 AU174013 Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA clone S13238, mRNA sequence
Length = 452
Score = 73.8 bits (37), Expect = 2e-010
Identities = 100/121 (82%)
Strand = Plus / Minus
Query: 608 gcgtgcccgatcgccaggatgatgttcagagggatcggcgactcttggatctgcttgagc 667
|||||| |||||| ||| | |||||||| |||||| |||||| ||||| |||||||||
Sbjct: 123 gcgtgcgcgatcgacagcacgatgttcaacgggatctccgactcctggatttgcttgagc 64
Query: 668 acggcttcctccggcacgtactcccgccggaacgtcttgccggtcttcttctcccacagc 727
||||| ||||| ||||||||| ||| | | | |||| || ||||||||||||||||||
Sbjct: 63 acggcgtcctcgggcacgtacaccctctccagcttcttccccgtcttcttctcccacagc 4
Query: 728 g 728
|
Sbjct: 3 g 3
Score = 48.1 bits (24), Expect = 0.013
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 496 gttgaggtactcgtcgacggtggtgtacttgacatccggg 535
||||||||| || |||||||||||||||| ||| ||||||
Sbjct: 232 gttgaggtagtcatcgacggtggtgtactggacgtccggg 193
>dbj|AK110636.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-169-C04, full
insert sequence
Length = 776
Score = 69.9 bits (35), Expect = 4e-009
Identities = 65/75 (86%)
Strand = Plus / Plus
Query: 1328 cccagccgcgcgctcgccgccacgacgtgcctgcccaggtaccccgtgccgccgaccacc 1387
||||||||||||| || || ||||| |||| ||| | |||||||||||| |||||||||
Sbjct: 603 cccagccgcgcgcgggcggcgacgacatgccggccgatgtaccccgtgcccccgaccacc 662
Query: 1388 aggatcttgctcttc 1402
|||||| ||||||||
Sbjct: 663 aggatcctgctcttc 677
>gb|AC137002.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone
OSJNBb0061M13, complete sequence
Length = 174910
Score = 69.9 bits (35), Expect = 4e-009
Identities = 65/75 (86%)
Strand = Plus / Plus
Query: 1328 cccagccgcgcgctcgccgccacgacgtgcctgcccaggtaccccgtgccgccgaccacc 1387
||||||||||||| || || ||||| |||| ||| | |||||||||||| |||||||||
Sbjct: 98586 cccagccgcgcgcgggcggcgacgacatgccggccgatgtaccccgtgcccccgaccacc 98645
Query: 1388 aggatcttgctcttc 1402
|||||| ||||||||
Sbjct: 98646 aggatcctgctcttc 98660
>gb|AACV01011508.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg011508, whole
genome shotgun sequence
Length = 7910
Score = 69.9 bits (35), Expect = 4e-009
Identities = 65/75 (86%)
Strand = Plus / Plus
Query: 1328 cccagccgcgcgctcgccgccacgacgtgcctgcccaggtaccccgtgccgccgaccacc 1387
||||||||||||| || || ||||| |||| ||| | |||||||||||| |||||||||
Sbjct: 5965 cccagccgcgcgcgggcggcgacgacatgccggccgatgtaccccgtgcccccgaccacc 6024
Query: 1388 aggatcttgctcttc 1402
|||||| ||||||||
Sbjct: 6025 aggatcctgctcttc 6039
>ref|NT_107229.1| Oryza sativa (japonica cultivar-group)
Length = 1596128
Score = 69.9 bits (35), Expect = 4e-009
Identities = 65/75 (86%)
Strand = Plus / Plus
Query: 1328 cccagccgcgcgctcgccgccacgacgtgcctgcccaggtaccccgtgccgccgaccacc 1387
||||||||||||| || || ||||| |||| ||| | |||||||||||| |||||||||
Sbjct: 146309 cccagccgcgcgcgggcggcgacgacatgccggccgatgtaccccgtgcccccgaccacc 146368
Query: 1388 aggatcttgctcttc 1402
|||||| ||||||||
Sbjct: 146369 aggatcctgctcttc 146383
>gb|CH401200.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000037
genomic scaffold, whole genome shotgun sequence
Length = 1072271
Score = 69.9 bits (35), Expect = 4e-009
Identities = 65/75 (86%)
Strand = Plus / Plus
Query: 1328 cccagccgcgcgctcgccgccacgacgtgcctgcccaggtaccccgtgccgccgaccacc 1387
||||||||||||| || || ||||| |||| ||| | |||||||||||| |||||||||
Sbjct: 248177 cccagccgcgcgcgggcggcgacgacatgccggccgatgtaccccgtgcccccgaccacc 248236
Query: 1388 aggatcttgctcttc 1402
|||||| ||||||||
Sbjct: 248237 aggatcctgctcttc 248251
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 69.9 bits (35), Expect = 4e-009
Identities = 65/75 (86%)
Strand = Plus / Plus
Query: 1328 cccagccgcgcgctcgccgccacgacgtgcctgcccaggtaccccgtgccgccgaccacc 1387
||||||||||||| || || ||||| |||| ||| | |||||||||||| |||||||||
Sbjct: 11214953 cccagccgcgcgcgggcggcgacgacatgccggccgatgtaccccgtgcccccgaccacc 11215012
Query: 1388 aggatcttgctcttc 1402
|||||| ||||||||
Sbjct: 11215013 aggatcctgctcttc 11215027
Score = 46.1 bits (23), Expect = 0.053
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1103 ccggcctccttgatggcgtcgacgagc 1129
|||||||||||||||||||||| ||||
Sbjct: 25002626 ccggcctccttgatggcgtcgatgagc 25002652
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 69.9 bits (35), Expect = 4e-009
Identities = 65/75 (86%)
Strand = Plus / Plus
Query: 1328 cccagccgcgcgctcgccgccacgacgtgcctgcccaggtaccccgtgccgccgaccacc 1387
||||||||||||| || || ||||| |||| ||| | |||||||||||| |||||||||
Sbjct: 10929382 cccagccgcgcgcgggcggcgacgacatgccggccgatgtaccccgtgcccccgaccacc 10929441
Query: 1388 aggatcttgctcttc 1402
|||||| ||||||||
Sbjct: 10929442 aggatcctgctcttc 10929456
Score = 46.1 bits (23), Expect = 0.053
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1103 ccggcctccttgatggcgtcgacgagc 1129
|||||||||||||||||||||| ||||
Sbjct: 25270514 ccggcctccttgatggcgtcgatgagc 25270540
>gb|C99213.1|C99213 C99213 Rice panicle at ripening stage Oryza sativa (japonica
cultivar-group) cDNA clone E10446_3A, mRNA sequence
Length = 251
Score = 48.1 bits (24), Expect = 0.013
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 496 gttgaggtactcgtcgacggtggtgtacttgacatccggg 535
||||||||| || |||||||||||||||| ||| ||||||
Sbjct: 123 gttgaggtagtcatcgacggtggtgtactggacgtccggg 84
>gb|AC137113.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
OSJNBb0006N14, complete sequence
Length = 155730
Score = 48.1 bits (24), Expect = 0.013
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 1103 ccggcctccttgatggcgtcgacgagccggctctggtcgg 1142
|||||||||||||||||||||| |||| | |||||||||
Sbjct: 47709 ccggcctccttgatggcgtcgatgagcttggtctggtcgg 47748
>ref|NT_079878.2| Oryza sativa (japonica cultivar-group)
Length = 2996370
Score = 48.1 bits (24), Expect = 0.013
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1093 cttgacgtttccggcctccttgatggcg 1120
||||| ||||||||||||||||||||||
Sbjct: 760954 cttgatgtttccggcctccttgatggcg 760981
>ref|NT_107125.1| Oryza sativa (japonica cultivar-group)
Length = 510809
Score = 48.1 bits (24), Expect = 0.013
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 1103 ccggcctccttgatggcgtcgacgagccggctctggtcgg 1142
|||||||||||||||||||||| |||| | |||||||||
Sbjct: 301863 ccggcctccttgatggcgtcgatgagcttggtctggtcgg 301902
>dbj|AP003512.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0618D11
Length = 150103
Score = 48.1 bits (24), Expect = 0.013
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1093 cttgacgtttccggcctccttgatggcg 1120
||||| ||||||||||||||||||||||
Sbjct: 57161 cttgatgtttccggcctccttgatggcg 57188
>gb|AACV01013870.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg013870, whole
genome shotgun sequence
Length = 56357
Score = 48.1 bits (24), Expect = 0.013
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 1103 ccggcctccttgatggcgtcgacgagccggctctggtcgg 1142
|||||||||||||||||||||| |||| | |||||||||
Sbjct: 54210 ccggcctccttgatggcgtcgatgagcttggtctggtcgg 54249
>gb|AACV01013985.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg013985, whole
genome shotgun sequence
Length = 91499
Score = 48.1 bits (24), Expect = 0.013
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 1093 cttgacgtttccggcctccttgatggcg 1120
||||| ||||||||||||||||||||||
Sbjct: 25387 cttgatgtttccggcctccttgatggcg 25360
>gb|CH401213.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000050
genomic scaffold, whole genome shotgun sequence
Length = 1883777
Score = 48.1 bits (24), Expect = 0.013
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1093 cttgacgtttccggcctccttgatggcg 1120
||||| ||||||||||||||||||||||
Sbjct: 908787 cttgatgtttccggcctccttgatggcg 908814
>gb|CH401212.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000049 genomic
scaffold, whole genome shotgun sequence
Length = 3314418
Score = 48.1 bits (24), Expect = 0.013
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 1103 ccggcctccttgatggcgtcgacgagccggctctggtcgg 1142
|||||||||||||||||||||| |||| | |||||||||
Sbjct: 2480893 ccggcctccttgatggcgtcgatgagcttggtctggtcgg 2480932
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 48.1 bits (24), Expect = 0.013
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1093 cttgacgtttccggcctccttgatggcg 1120
||||| ||||||||||||||||||||||
Sbjct: 15529426 cttgatgtttccggcctccttgatggcg 15529453
Score = 48.1 bits (24), Expect = 0.013
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 1103 ccggcctccttgatggcgtcgacgagccggctctggtcgg 1142
|||||||||||||||||||||| |||| | |||||||||
Sbjct: 13787014 ccggcctccttgatggcgtcgatgagcttggtctggtcgg 13787053
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 48.1 bits (24), Expect = 0.013
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1093 cttgacgtttccggcctccttgatggcg 1120
||||| ||||||||||||||||||||||
Sbjct: 16028432 cttgatgtttccggcctccttgatggcg 16028459
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
sequence
Length = 28386948
Score = 48.1 bits (24), Expect = 0.013
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 1103 ccggcctccttgatggcgtcgacgagccggctctggtcgg 1142
|||||||||||||||||||||| |||| | |||||||||
Sbjct: 15192076 ccggcctccttgatggcgtcgatgagcttggtctggtcgg 15192115
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
Length = 28369397
Score = 48.1 bits (24), Expect = 0.013
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 1103 ccggcctccttgatggcgtcgacgagccggctctggtcgg 1142
|||||||||||||||||||||| |||| | |||||||||
Sbjct: 15273575 ccggcctccttgatggcgtcgatgagcttggtctggtcgg 15273614
>gb|AC130606.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0010E07, ***
SEQUENCING IN PROGRESS ***, 5 ordered pieces
Length = 152945
Score = 46.1 bits (23), Expect = 0.053
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1103 ccggcctccttgatggcgtcgacgagc 1129
|||||||||||||||||||||| ||||
Sbjct: 10274 ccggcctccttgatggcgtcgatgagc 10248
>emb|AL713951.4|CNS07YPU Oryza sativa chromosome 12, . BAC OJ1111_C09 of library Monsanto from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 165137
Score = 46.1 bits (23), Expect = 0.053
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1103 ccggcctccttgatggcgtcgacgagc 1129
|||||||||||||||||||||| ||||
Sbjct: 72738 ccggcctccttgatggcgtcgatgagc 72712
>gb|AC113335.1| Genomic sequence for Oryza sativa (japonica cultivar-group) cultivar
Nipponbare clone OJ1003C07, from chromosome 10, complete
sequence
Length = 115188
Score = 46.1 bits (23), Expect = 0.053
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1103 ccggcctccttgatggcgtcgacgagc 1129
|||||||||||||||||||||| ||||
Sbjct: 85572 ccggcctccttgatggcgtcgatgagc 85598
>gb|AC132214.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
OSJNBa0040M05, from chromosome 3, complete sequence
Length = 153126
Score = 46.1 bits (23), Expect = 0.053
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1103 ccggcctccttgatggcgtcgacgagc 1129
|||||||||||||||||||||| ||||
Sbjct: 145243 ccggcctccttgatggcgtcgatgagc 145269
>gb|AC105928.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
OSJNBa0014O06, complete sequence
Length = 168031
Score = 46.1 bits (23), Expect = 0.053
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1103 ccggcctccttgatggcgtcgacgagc 1129
|||||||||||||||||||||| ||||
Sbjct: 65410 ccggcctccttgatggcgtcgatgagc 65436
>dbj|AP004462.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0450B04
Length = 153268
Score = 46.1 bits (23), Expect = 0.053
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1103 ccggcctccttgatggcgtcgacgagc 1129
|||||||||||||||||||||| ||||
Sbjct: 89206 ccggcctccttgatggcgtcgatgagc 89180
>dbj|AP004872.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0444A09
Length = 125900
Score = 46.1 bits (23), Expect = 0.053
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1103 ccggcctccttgatggcgtcgacgagc 1129
|||||||||||||||||||||| ||||
Sbjct: 84497 ccggcctccttgatggcgtcgatgagc 84523
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,412,826
Number of Sequences: 438736
Number of extensions: 2412826
Number of successful extensions: 17704
Number of sequences better than 0.5: 100
Number of HSP's better than 0.5 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15903
Number of HSP's gapped (non-prelim): 1751
length of query: 1446
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1425
effective length of database: 2,791,206,460
effective search space: 3977469205500
effective search space used: 3977469205500
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)