BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3995470.2.1
(744 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB683392.1|CB683392 OSJNEf11L08.f OSJNEf Oryza sativa (j... 278 4e-072
ref|NM_196405.1| Oryza sativa (japonica cultivar-group) hyp... 214 5e-053
gb|AC126221.2| Oryza sativa (japonica cultivar-group) chrom... 202 2e-049
gb|AC144491.1| Oryza sativa (japonica cultivar-group) chrom... 202 2e-049
gb|AACV01005957.1| Oryza sativa (japonica cultivar-group) c... 202 2e-049
ref|NT_079917.2| Oryza sativa (japonica cultivar-group) 202 2e-049
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 202 2e-049
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 202 2e-049
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 202 2e-049
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 202 2e-049
gb|AC083943.8| Genomic sequence for Oryza sativa, Nipponbar... 155 4e-035
gb|AC146340.1| Genomic sequence for Oryza sativa, Nipponbar... 155 4e-035
gb|AACV01021504.1| Oryza sativa (japonica cultivar-group) c... 155 4e-035
ref|NT_080066.1| Oryza sativa (japonica cultivar-group) chr... 155 4e-035
gb|CH401254.1| Oryza sativa (japonica cultivar-group) chrom... 155 4e-035
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 155 4e-035
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 155 4e-035
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 155 4e-035
gb|AQ273895.1|AQ273895 nbxb0031L04r CUGI Rice BAC Library O... 103 1e-019
gb|CV729296.1|CV729296 FLO--02-B04.g1 Rice flower lambda ph... 96 3e-017
dbj|AK071601.1| Oryza sativa (japonica cultivar-group) cDNA... 96 3e-017
dbj|AP005848.3| Oryza sativa (japonica cultivar-group) geno... 96 3e-017
gb|AACV01005419.1| Oryza sativa (japonica cultivar-group) c... 96 3e-017
ref|XM_467790.1| Oryza sativa (japonica cultivar-group), mRNA 96 3e-017
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 96 3e-017
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 96 3e-017
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 96 3e-017
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 96 3e-017
dbj|AP003513.2| Oryza sativa (japonica cultivar-group) geno... 94 1e-016
dbj|AP003569.3| Oryza sativa (japonica cultivar-group) geno... 94 1e-016
gb|AACV01013344.1| Oryza sativa (japonica cultivar-group) c... 94 1e-016
ref|NT_079873.2| Oryza sativa (japonica cultivar-group) 94 1e-016
gb|CH401209.1| Oryza sativa (japonica cultivar-group) chrom... 94 1e-016
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 94 1e-016
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 94 1e-016
gb|CV733228.1|CV733228 FLO--08-A18.g1 Rice flower lambda ph... 88 8e-015
gb|AACV01019959.1| Oryza sativa (japonica cultivar-group) c... 60 2e-006
gb|CH401242.1| Oryza sativa (japonica cultivar-group) chrom... 60 2e-006
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 60 2e-006
gb|AACV01010560.1| Oryza sativa (japonica cultivar-group) c... 52 4e-004
ref|XM_474070.1| Oryza sativa (japonica cultivar-group), p... 52 4e-004
ref|NT_107201.1| Oryza sativa (japonica cultivar-group) 52 4e-004
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 52 4e-004
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 52 4e-004
emb|AL731607.3|OSJN00250 Oryza sativa genomic DNA, chromoso... 52 4e-004
emb|AL606455.3|OSJN00015 Oryza sativa genomic DNA, chromoso... 52 4e-004
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 52 4e-004
gb|AQ288090.1|AQ288090 nbxb0032E14r CUGI Rice BAC Library O... 46 0.027
gb|AU030987.1|AU030987 AU030987 Rice cDNA from immature lea... 46 0.027
dbj|AP003740.2| Oryza sativa (japonica cultivar-group) geno... 42 0.42
dbj|AP004572.5| Oryza sativa (japonica cultivar-group) geno... 42 0.42
gb|AACV01015477.1| Oryza sativa (japonica cultivar-group) c... 42 0.42
ref|NT_079879.2| Oryza sativa (japonica cultivar-group) 42 0.42
gb|CH401221.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.42
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.42
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 42 0.42
>gb|CB683392.1|CB683392 OSJNEf11L08.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf11L08 5', mRNA sequence
Length = 632
Score = 278 bits (140), Expect = 4e-072
Identities = 215/240 (89%)
Strand = Plus / Plus
Query: 98 aggatcagcgacgacgagatcaacgagctgatctccaagctccaggctctcctcccggaa 157
||||||| |||||| |||||||||||||| ||||||||||| ||||| |||||||||||
Sbjct: 238 aggatcaccgacgaggagatcaacgagctcatctccaagcttcaggccctcctcccggag 297
Query: 158 tcctcacgccgccggaacgcgagccggtcgtcggcgtcgaagcttctgaaggagacgtgc 217
||||| ||| |||| ||| ||||||||||||||||||||||| || ||||||||||||
Sbjct: 298 tcctcccgcagccgcggcgcaagccggtcgtcggcgtcgaagctgctcaaggagacgtgc 357
Query: 218 gcctacgtcaagagcctgcaccgggaggtggacgacctctcggagcggctgtcggggctc 277
|||| ||||||||||||||||||||||||||||||| || || |||||||||| ||||
Sbjct: 358 agctacatcaagagcctgcaccgggaggtggacgacctgtccgaccggctgtcggagctc 417
Query: 278 atggcgaccatggacaacgacagcccccaggccgagatcatccggagcctcctccggtga 337
||| |||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 418 atgtcgacgatggacaacaacagcccgcaggccgagatcatccggagcctcctccggtga 477
>ref|NM_196405.1| Oryza sativa (japonica cultivar-group) hypothetical protein similar
to putative DNA binding proteins (OSJNBa0044A10.22),
mRNA
Length = 267
Score = 214 bits (108), Expect = 5e-053
Identities = 209/242 (86%), Gaps = 3/242 (1%)
Strand = Plus / Plus
Query: 95 ggcaggatcagcgacgacgagatcaacgagctgatctccaagctccaggctctcctcccg 154
|||||||||| ||||||||||||||||||||| ||||||||||| ||| | |||||||||
Sbjct: 22 ggcaggatcaccgacgacgagatcaacgagctcatctccaagctgcagtccctcctcccg 81
Query: 155 gaatcctcacgccgccggaacgcgagc---cggtcgtcggcgtcgaagcttctgaaggag 211
|| ||||| |||||||| ||| | | |||||| ||||| ||||||| |||||||||
Sbjct: 82 gagtcctctcgccgccgcggcgccacctcccggtcgccggcgacgaagctgctgaaggag 141
Query: 212 acgtgcgcctacgtcaagagcctgcaccgggaggtggacgacctctcggagcggctgtcg 271
| |||| |||| ||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 142 atgtgcagctacatcaagagcctgcaccgggaagtggacgacctgagcgagcggctgtcg 201
Query: 272 gggctcatggcgaccatggacaacgacagcccccaggccgagatcatccggagcctcctc 331
| |||||||||||||||||||| | ||||||| |||||||| |||||||| |||||||||
Sbjct: 202 gagctcatggcgaccatggacagcaacagccctcaggccgacatcatccgcagcctcctc 261
Query: 332 cg 333
||
Sbjct: 262 cg 263
>gb|AC126221.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
OSJNBa0015N19, complete sequence
Length = 168430
Score = 202 bits (102), Expect = 2e-049
Identities = 141/154 (91%)
Strand = Plus / Plus
Query: 184 gtcgtcggcgtcgaagcttctgaaggagacgtgcgcctacgtcaagagcctgcaccggga 243
|||||||||||||||||| || |||||||||||| |||| |||||||||||||||||||
Sbjct: 34273 gtcgtcggcgtcgaagctgctcaaggagacgtgcagctacatcaagagcctgcaccggga 34332
Query: 244 ggtggacgacctctcggagcggctgtcggggctcatggcgaccatggacaacgacagccc 303
|||||||||||| || || |||||||||| ||||||| |||| ||||||||| |||||||
Sbjct: 34333 ggtggacgacctgtccgaccggctgtcggagctcatgtcgacgatggacaacaacagccc 34392
Query: 304 ccaggccgagatcatccggagcctcctccggtga 337
|||||||||||||||||||||||||||||||||
Sbjct: 34393 gcaggccgagatcatccggagcctcctccggtga 34426
Score = 83.8 bits (42), Expect = 1e-013
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 98 aggatcagcgacgacgagatcaacgagctgatctccaagctccaggctctcctcccggaa 157
||||||| |||||| |||||||||||||| ||||||||||| ||||| |||||||||||
Sbjct: 33898 aggatcaccgacgaggagatcaacgagctcatctccaagcttcaggccctcctcccggag 33957
Query: 158 tcctcacgccgccg 171
||||| ||| ||||
Sbjct: 33958 tcctcccgcagccg 33971
>gb|AC144491.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNAa0091P11,
complete sequence
Length = 132151
Score = 202 bits (102), Expect = 2e-049
Identities = 141/154 (91%)
Strand = Plus / Plus
Query: 184 gtcgtcggcgtcgaagcttctgaaggagacgtgcgcctacgtcaagagcctgcaccggga 243
|||||||||||||||||| || |||||||||||| |||| |||||||||||||||||||
Sbjct: 106424 gtcgtcggcgtcgaagctgctcaaggagacgtgcagctacatcaagagcctgcaccggga 106483
Query: 244 ggtggacgacctctcggagcggctgtcggggctcatggcgaccatggacaacgacagccc 303
|||||||||||| || || |||||||||| ||||||| |||| ||||||||| |||||||
Sbjct: 106484 ggtggacgacctgtccgaccggctgtcggagctcatgtcgacgatggacaacaacagccc 106543
Query: 304 ccaggccgagatcatccggagcctcctccggtga 337
|||||||||||||||||||||||||||||||||
Sbjct: 106544 gcaggccgagatcatccggagcctcctccggtga 106577
Score = 83.8 bits (42), Expect = 1e-013
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 98 aggatcagcgacgacgagatcaacgagctgatctccaagctccaggctctcctcccggaa 157
||||||| |||||| |||||||||||||| ||||||||||| ||||| |||||||||||
Sbjct: 106049 aggatcaccgacgaggagatcaacgagctcatctccaagcttcaggccctcctcccggag 106108
Query: 158 tcctcacgccgccg 171
||||| ||| ||||
Sbjct: 106109 tcctcccgcagccg 106122
>gb|AACV01005957.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg005957, whole
genome shotgun sequence
Length = 59938
Score = 202 bits (102), Expect = 2e-049
Identities = 141/154 (91%)
Strand = Plus / Plus
Query: 184 gtcgtcggcgtcgaagcttctgaaggagacgtgcgcctacgtcaagagcctgcaccggga 243
|||||||||||||||||| || |||||||||||| |||| |||||||||||||||||||
Sbjct: 14833 gtcgtcggcgtcgaagctgctcaaggagacgtgcagctacatcaagagcctgcaccggga 14892
Query: 244 ggtggacgacctctcggagcggctgtcggggctcatggcgaccatggacaacgacagccc 303
|||||||||||| || || |||||||||| ||||||| |||| ||||||||| |||||||
Sbjct: 14893 ggtggacgacctgtccgaccggctgtcggagctcatgtcgacgatggacaacaacagccc 14952
Query: 304 ccaggccgagatcatccggagcctcctccggtga 337
|||||||||||||||||||||||||||||||||
Sbjct: 14953 gcaggccgagatcatccggagcctcctccggtga 14986
Score = 83.8 bits (42), Expect = 1e-013
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 98 aggatcagcgacgacgagatcaacgagctgatctccaagctccaggctctcctcccggaa 157
||||||| |||||| |||||||||||||| ||||||||||| ||||| |||||||||||
Sbjct: 14458 aggatcaccgacgaggagatcaacgagctcatctccaagcttcaggccctcctcccggag 14517
Query: 158 tcctcacgccgccg 171
||||| ||| ||||
Sbjct: 14518 tcctcccgcagccg 14531
>ref|NT_079917.2| Oryza sativa (japonica cultivar-group)
Length = 2507935
Score = 202 bits (102), Expect = 2e-049
Identities = 141/154 (91%)
Strand = Plus / Plus
Query: 184 gtcgtcggcgtcgaagcttctgaaggagacgtgcgcctacgtcaagagcctgcaccggga 243
|||||||||||||||||| || |||||||||||| |||| |||||||||||||||||||
Sbjct: 2236368 gtcgtcggcgtcgaagctgctcaaggagacgtgcagctacatcaagagcctgcaccggga 2236427
Query: 244 ggtggacgacctctcggagcggctgtcggggctcatggcgaccatggacaacgacagccc 303
|||||||||||| || || |||||||||| ||||||| |||| ||||||||| |||||||
Sbjct: 2236428 ggtggacgacctgtccgaccggctgtcggagctcatgtcgacgatggacaacaacagccc 2236487
Query: 304 ccaggccgagatcatccggagcctcctccggtga 337
|||||||||||||||||||||||||||||||||
Sbjct: 2236488 gcaggccgagatcatccggagcctcctccggtga 2236521
Score = 83.8 bits (42), Expect = 1e-013
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 98 aggatcagcgacgacgagatcaacgagctgatctccaagctccaggctctcctcccggaa 157
||||||| |||||| |||||||||||||| ||||||||||| ||||| |||||||||||
Sbjct: 2235993 aggatcaccgacgaggagatcaacgagctcatctccaagcttcaggccctcctcccggag 2236052
Query: 158 tcctcacgccgccg 171
||||| ||| ||||
Sbjct: 2236053 tcctcccgcagccg 2236066
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
scaffold, whole genome shotgun sequence
Length = 13858245
Score = 202 bits (102), Expect = 2e-049
Identities = 141/154 (91%)
Strand = Plus / Plus
Query: 184 gtcgtcggcgtcgaagcttctgaaggagacgtgcgcctacgtcaagagcctgcaccggga 243
|||||||||||||||||| || |||||||||||| |||| |||||||||||||||||||
Sbjct: 3773128 gtcgtcggcgtcgaagctgctcaaggagacgtgcagctacatcaagagcctgcaccggga 3773187
Query: 244 ggtggacgacctctcggagcggctgtcggggctcatggcgaccatggacaacgacagccc 303
|||||||||||| || || |||||||||| ||||||| |||| ||||||||| |||||||
Sbjct: 3773188 ggtggacgacctgtccgaccggctgtcggagctcatgtcgacgatggacaacaacagccc 3773247
Query: 304 ccaggccgagatcatccggagcctcctccggtga 337
|||||||||||||||||||||||||||||||||
Sbjct: 3773248 gcaggccgagatcatccggagcctcctccggtga 3773281
Score = 83.8 bits (42), Expect = 1e-013
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 98 aggatcagcgacgacgagatcaacgagctgatctccaagctccaggctctcctcccggaa 157
||||||| |||||| |||||||||||||| ||||||||||| ||||| |||||||||||
Sbjct: 3772753 aggatcaccgacgaggagatcaacgagctcatctccaagcttcaggccctcctcccggag 3772812
Query: 158 tcctcacgccgccg 171
||||| ||| ||||
Sbjct: 3772813 tcctcccgcagccg 3772826
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 202 bits (102), Expect = 2e-049
Identities = 141/154 (91%)
Strand = Plus / Plus
Query: 184 gtcgtcggcgtcgaagcttctgaaggagacgtgcgcctacgtcaagagcctgcaccggga 243
|||||||||||||||||| || |||||||||||| |||| |||||||||||||||||||
Sbjct: 3965490 gtcgtcggcgtcgaagctgctcaaggagacgtgcagctacatcaagagcctgcaccggga 3965549
Query: 244 ggtggacgacctctcggagcggctgtcggggctcatggcgaccatggacaacgacagccc 303
|||||||||||| || || |||||||||| ||||||| |||| ||||||||| |||||||
Sbjct: 3965550 ggtggacgacctgtccgaccggctgtcggagctcatgtcgacgatggacaacaacagccc 3965609
Query: 304 ccaggccgagatcatccggagcctcctccggtga 337
|||||||||||||||||||||||||||||||||
Sbjct: 3965610 gcaggccgagatcatccggagcctcctccggtga 3965643
Score = 83.8 bits (42), Expect = 1e-013
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 98 aggatcagcgacgacgagatcaacgagctgatctccaagctccaggctctcctcccggaa 157
||||||| |||||| |||||||||||||| ||||||||||| ||||| |||||||||||
Sbjct: 3965115 aggatcaccgacgaggagatcaacgagctcatctccaagcttcaggccctcctcccggag 3965174
Query: 158 tcctcacgccgccg 171
||||| ||| ||||
Sbjct: 3965175 tcctcccgcagccg 3965188
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 202 bits (102), Expect = 2e-049
Identities = 141/154 (91%)
Strand = Plus / Plus
Query: 184 gtcgtcggcgtcgaagcttctgaaggagacgtgcgcctacgtcaagagcctgcaccggga 243
|||||||||||||||||| || |||||||||||| |||| |||||||||||||||||||
Sbjct: 3827911 gtcgtcggcgtcgaagctgctcaaggagacgtgcagctacatcaagagcctgcaccggga 3827970
Query: 244 ggtggacgacctctcggagcggctgtcggggctcatggcgaccatggacaacgacagccc 303
|||||||||||| || || |||||||||| ||||||| |||| ||||||||| |||||||
Sbjct: 3827971 ggtggacgacctgtccgaccggctgtcggagctcatgtcgacgatggacaacaacagccc 3828030
Query: 304 ccaggccgagatcatccggagcctcctccggtga 337
|||||||||||||||||||||||||||||||||
Sbjct: 3828031 gcaggccgagatcatccggagcctcctccggtga 3828064
Score = 83.8 bits (42), Expect = 1e-013
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 98 aggatcagcgacgacgagatcaacgagctgatctccaagctccaggctctcctcccggaa 157
||||||| |||||| |||||||||||||| ||||||||||| ||||| |||||||||||
Sbjct: 3827536 aggatcaccgacgaggagatcaacgagctcatctccaagcttcaggccctcctcccggag 3827595
Query: 158 tcctcacgccgccg 171
||||| ||| ||||
Sbjct: 3827596 tcctcccgcagccg 3827609
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 202 bits (102), Expect = 2e-049
Identities = 141/154 (91%)
Strand = Plus / Plus
Query: 184 gtcgtcggcgtcgaagcttctgaaggagacgtgcgcctacgtcaagagcctgcaccggga 243
|||||||||||||||||| || |||||||||||| |||| |||||||||||||||||||
Sbjct: 3827800 gtcgtcggcgtcgaagctgctcaaggagacgtgcagctacatcaagagcctgcaccggga 3827859
Query: 244 ggtggacgacctctcggagcggctgtcggggctcatggcgaccatggacaacgacagccc 303
|||||||||||| || || |||||||||| ||||||| |||| ||||||||| |||||||
Sbjct: 3827860 ggtggacgacctgtccgaccggctgtcggagctcatgtcgacgatggacaacaacagccc 3827919
Query: 304 ccaggccgagatcatccggagcctcctccggtga 337
|||||||||||||||||||||||||||||||||
Sbjct: 3827920 gcaggccgagatcatccggagcctcctccggtga 3827953
Score = 83.8 bits (42), Expect = 1e-013
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 98 aggatcagcgacgacgagatcaacgagctgatctccaagctccaggctctcctcccggaa 157
||||||| |||||| |||||||||||||| ||||||||||| ||||| |||||||||||
Sbjct: 3827425 aggatcaccgacgaggagatcaacgagctcatctccaagcttcaggccctcctcccggag 3827484
Query: 158 tcctcacgccgccg 171
||||| ||| ||||
Sbjct: 3827485 tcctcccgcagccg 3827498
>gb|AC083943.8| Genomic sequence for Oryza sativa, Nipponbare strain, clone
OSJNBa0044A10, from chromosome 10, complete sequence
Length = 169270
Score = 155 bits (78), Expect = 4e-035
Identities = 132/150 (88%)
Strand = Plus / Minus
Query: 184 gtcgtcggcgtcgaagcttctgaaggagacgtgcgcctacgtcaagagcctgcaccggga 243
|||| ||||| ||||||| |||||||||| |||| |||| |||||||||||||||||||
Sbjct: 162719 gtcgccggcgacgaagctgctgaaggagatgtgcagctacatcaagagcctgcaccggga 162660
Query: 244 ggtggacgacctctcggagcggctgtcggggctcatggcgaccatggacaacgacagccc 303
||||||||||| ||||||||||||| |||||||||||||||||||| | |||||||
Sbjct: 162659 agtggacgacctgagcgagcggctgtcggagctcatggcgaccatggacagcaacagccc 162600
Query: 304 ccaggccgagatcatccggagcctcctccg 333
|||||||| |||||||| |||||||||||
Sbjct: 162599 tcaggccgacatcatccgcagcctcctccg 162570
Score = 97.6 bits (49), Expect = 8e-018
Identities = 70/77 (90%)
Strand = Plus / Minus
Query: 95 ggcaggatcagcgacgacgagatcaacgagctgatctccaagctccaggctctcctcccg 154
|||||||||| ||||||||||||||||||||| ||||||||||| ||| | |||||||||
Sbjct: 162925 ggcaggatcaccgacgacgagatcaacgagctcatctccaagctgcagtccctcctcccg 162866
Query: 155 gaatcctcacgccgccg 171
|| ||||| ||||||||
Sbjct: 162865 gagtcctctcgccgccg 162849
>gb|AC146340.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
OSJNAa0044A10, from chromosome 10, complete sequence
Length = 173374
Score = 155 bits (78), Expect = 4e-035
Identities = 132/150 (88%)
Strand = Plus / Minus
Query: 184 gtcgtcggcgtcgaagcttctgaaggagacgtgcgcctacgtcaagagcctgcaccggga 243
|||| ||||| ||||||| |||||||||| |||| |||| |||||||||||||||||||
Sbjct: 53449 gtcgccggcgacgaagctgctgaaggagatgtgcagctacatcaagagcctgcaccggga 53390
Query: 244 ggtggacgacctctcggagcggctgtcggggctcatggcgaccatggacaacgacagccc 303
||||||||||| ||||||||||||| |||||||||||||||||||| | |||||||
Sbjct: 53389 agtggacgacctgagcgagcggctgtcggagctcatggcgaccatggacagcaacagccc 53330
Query: 304 ccaggccgagatcatccggagcctcctccg 333
|||||||| |||||||| |||||||||||
Sbjct: 53329 tcaggccgacatcatccgcagcctcctccg 53300
Score = 97.6 bits (49), Expect = 8e-018
Identities = 70/77 (90%)
Strand = Plus / Minus
Query: 95 ggcaggatcagcgacgacgagatcaacgagctgatctccaagctccaggctctcctcccg 154
|||||||||| ||||||||||||||||||||| ||||||||||| ||| | |||||||||
Sbjct: 53655 ggcaggatcaccgacgacgagatcaacgagctcatctccaagctgcagtccctcctcccg 53596
Query: 155 gaatcctcacgccgccg 171
|| ||||| ||||||||
Sbjct: 53595 gagtcctctcgccgccg 53579
Score = 60.0 bits (30), Expect = 2e-006
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 207 aggagacgtgcgcctacgtcaagagcctgcaccgggaggtggacgacctc 256
||||||||||| |||| || ||||||||||||||||||||||||||||
Sbjct: 105008 aggagacgtgcagctacatccggagcctgcaccgggaggtggacgacctc 105057
Score = 42.1 bits (21), Expect = 0.42
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 129 tctccaagctccaggctctcctccc 153
|||||||||||||||| ||||||||
Sbjct: 104825 tctccaagctccaggccctcctccc 104849
>gb|AACV01021504.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg021504, whole
genome shotgun sequence
Length = 21962
Score = 155 bits (78), Expect = 4e-035
Identities = 132/150 (88%)
Strand = Plus / Plus
Query: 184 gtcgtcggcgtcgaagcttctgaaggagacgtgcgcctacgtcaagagcctgcaccggga 243
|||| ||||| ||||||| |||||||||| |||| |||| |||||||||||||||||||
Sbjct: 7977 gtcgccggcgacgaagctgctgaaggagatgtgcagctacatcaagagcctgcaccggga 8036
Query: 244 ggtggacgacctctcggagcggctgtcggggctcatggcgaccatggacaacgacagccc 303
||||||||||| ||||||||||||| |||||||||||||||||||| | |||||||
Sbjct: 8037 agtggacgacctgagcgagcggctgtcggagctcatggcgaccatggacagcaacagccc 8096
Query: 304 ccaggccgagatcatccggagcctcctccg 333
|||||||| |||||||| |||||||||||
Sbjct: 8097 tcaggccgacatcatccgcagcctcctccg 8126
Score = 97.6 bits (49), Expect = 8e-018
Identities = 70/77 (90%)
Strand = Plus / Plus
Query: 95 ggcaggatcagcgacgacgagatcaacgagctgatctccaagctccaggctctcctcccg 154
|||||||||| ||||||||||||||||||||| ||||||||||| ||| | |||||||||
Sbjct: 7771 ggcaggatcaccgacgacgagatcaacgagctcatctccaagctgcagtccctcctcccg 7830
Query: 155 gaatcctcacgccgccg 171
|| ||||| ||||||||
Sbjct: 7831 gagtcctctcgccgccg 7847
>ref|NT_080066.1| Oryza sativa (japonica cultivar-group) chromosome 10
Length = 1531814
Score = 155 bits (78), Expect = 4e-035
Identities = 132/150 (88%)
Strand = Plus / Minus
Query: 184 gtcgtcggcgtcgaagcttctgaaggagacgtgcgcctacgtcaagagcctgcaccggga 243
|||| ||||| ||||||| |||||||||| |||| |||| |||||||||||||||||||
Sbjct: 1525263 gtcgccggcgacgaagctgctgaaggagatgtgcagctacatcaagagcctgcaccggga 1525204
Query: 244 ggtggacgacctctcggagcggctgtcggggctcatggcgaccatggacaacgacagccc 303
||||||||||| ||||||||||||| |||||||||||||||||||| | |||||||
Sbjct: 1525203 agtggacgacctgagcgagcggctgtcggagctcatggcgaccatggacagcaacagccc 1525144
Query: 304 ccaggccgagatcatccggagcctcctccg 333
|||||||| |||||||| |||||||||||
Sbjct: 1525143 tcaggccgacatcatccgcagcctcctccg 1525114
Score = 97.6 bits (49), Expect = 8e-018
Identities = 70/77 (90%)
Strand = Plus / Minus
Query: 95 ggcaggatcagcgacgacgagatcaacgagctgatctccaagctccaggctctcctcccg 154
|||||||||| ||||||||||||||||||||| ||||||||||| ||| | |||||||||
Sbjct: 1525469 ggcaggatcaccgacgacgagatcaacgagctcatctccaagctgcagtccctcctcccg 1525410
Query: 155 gaatcctcacgccgccg 171
|| ||||| ||||||||
Sbjct: 1525409 gagtcctctcgccgccg 1525393
>gb|CH401254.1| Oryza sativa (japonica cultivar-group) chromosome 10 scaffold000091 genomic
scaffold, whole genome shotgun sequence
Length = 10615099
Score = 155 bits (78), Expect = 4e-035
Identities = 132/150 (88%)
Strand = Plus / Minus
Query: 184 gtcgtcggcgtcgaagcttctgaaggagacgtgcgcctacgtcaagagcctgcaccggga 243
|||| ||||| ||||||| |||||||||| |||| |||| |||||||||||||||||||
Sbjct: 1401334 gtcgccggcgacgaagctgctgaaggagatgtgcagctacatcaagagcctgcaccggga 1401275
Query: 244 ggtggacgacctctcggagcggctgtcggggctcatggcgaccatggacaacgacagccc 303
||||||||||| ||||||||||||| |||||||||||||||||||| | |||||||
Sbjct: 1401274 agtggacgacctgagcgagcggctgtcggagctcatggcgaccatggacagcaacagccc 1401215
Query: 304 ccaggccgagatcatccggagcctcctccg 333
|||||||| |||||||| |||||||||||
Sbjct: 1401214 tcaggccgacatcatccgcagcctcctccg 1401185
Score = 97.6 bits (49), Expect = 8e-018
Identities = 70/77 (90%)
Strand = Plus / Minus
Query: 95 ggcaggatcagcgacgacgagatcaacgagctgatctccaagctccaggctctcctcccg 154
|||||||||| ||||||||||||||||||||| ||||||||||| ||| | |||||||||
Sbjct: 1401540 ggcaggatcaccgacgacgagatcaacgagctcatctccaagctgcagtccctcctcccg 1401481
Query: 155 gaatcctcacgccgccg 171
|| ||||| ||||||||
Sbjct: 1401480 gagtcctctcgccgccg 1401464
>gb|CM000147.1| Oryza sativa (japonica cultivar-group) chromosome 10, whole genome shotgun
sequence
Length = 21480893
Score = 155 bits (78), Expect = 4e-035
Identities = 132/150 (88%)
Strand = Plus / Minus
Query: 184 gtcgtcggcgtcgaagcttctgaaggagacgtgcgcctacgtcaagagcctgcaccggga 243
|||| ||||| ||||||| |||||||||| |||| |||| |||||||||||||||||||
Sbjct: 12267128 gtcgccggcgacgaagctgctgaaggagatgtgcagctacatcaagagcctgcaccggga 12267069
Query: 244 ggtggacgacctctcggagcggctgtcggggctcatggcgaccatggacaacgacagccc 303
||||||||||| ||||||||||||| |||||||||||||||||||| | |||||||
Sbjct: 12267068 agtggacgacctgagcgagcggctgtcggagctcatggcgaccatggacagcaacagccc 12267009
Query: 304 ccaggccgagatcatccggagcctcctccg 333
|||||||| |||||||| |||||||||||
Sbjct: 12267008 tcaggccgacatcatccgcagcctcctccg 12266979
Score = 97.6 bits (49), Expect = 8e-018
Identities = 70/77 (90%)
Strand = Plus / Minus
Query: 95 ggcaggatcagcgacgacgagatcaacgagctgatctccaagctccaggctctcctcccg 154
|||||||||| ||||||||||||||||||||| ||||||||||| ||| | |||||||||
Sbjct: 12267334 ggcaggatcaccgacgacgagatcaacgagctcatctccaagctgcagtccctcctcccg 12267275
Query: 155 gaatcctcacgccgccg 171
|| ||||| ||||||||
Sbjct: 12267274 gagtcctctcgccgccg 12267258
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
sequence
Length = 22685906
Score = 155 bits (78), Expect = 4e-035
Identities = 132/150 (88%)
Strand = Plus / Minus
Query: 184 gtcgtcggcgtcgaagcttctgaaggagacgtgcgcctacgtcaagagcctgcaccggga 243
|||| ||||| ||||||| |||||||||| |||| |||| |||||||||||||||||||
Sbjct: 13207200 gtcgccggcgacgaagctgctgaaggagatgtgcagctacatcaagagcctgcaccggga 13207141
Query: 244 ggtggacgacctctcggagcggctgtcggggctcatggcgaccatggacaacgacagccc 303
||||||||||| ||||||||||||| |||||||||||||||||||| | |||||||
Sbjct: 13207140 agtggacgacctgagcgagcggctgtcggagctcatggcgaccatggacagcaacagccc 13207081
Query: 304 ccaggccgagatcatccggagcctcctccg 333
|||||||| |||||||| |||||||||||
Sbjct: 13207080 tcaggccgacatcatccgcagcctcctccg 13207051
Score = 97.6 bits (49), Expect = 8e-018
Identities = 70/77 (90%)
Strand = Plus / Minus
Query: 95 ggcaggatcagcgacgacgagatcaacgagctgatctccaagctccaggctctcctcccg 154
|||||||||| ||||||||||||||||||||| ||||||||||| ||| | |||||||||
Sbjct: 13207406 ggcaggatcaccgacgacgagatcaacgagctcatctccaagctgcagtccctcctcccg 13207347
Query: 155 gaatcctcacgccgccg 171
|| ||||| ||||||||
Sbjct: 13207346 gagtcctctcgccgccg 13207330
Score = 60.0 bits (30), Expect = 2e-006
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 207 aggagacgtgcgcctacgtcaagagcctgcaccgggaggtggacgacctc 256
||||||||||| |||| || ||||||||||||||||||||||||||||
Sbjct: 13258759 aggagacgtgcagctacatccggagcctgcaccgggaggtggacgacctc 13258808
Score = 42.1 bits (21), Expect = 0.42
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 129 tctccaagctccaggctctcctccc 153
|||||||||||||||| ||||||||
Sbjct: 13258576 tctccaagctccaggccctcctccc 13258600
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
Length = 22698374
Score = 155 bits (78), Expect = 4e-035
Identities = 132/150 (88%)
Strand = Plus / Minus
Query: 184 gtcgtcggcgtcgaagcttctgaaggagacgtgcgcctacgtcaagagcctgcaccggga 243
|||| ||||| ||||||| |||||||||| |||| |||| |||||||||||||||||||
Sbjct: 13214540 gtcgccggcgacgaagctgctgaaggagatgtgcagctacatcaagagcctgcaccggga 13214481
Query: 244 ggtggacgacctctcggagcggctgtcggggctcatggcgaccatggacaacgacagccc 303
||||||||||| ||||||||||||| |||||||||||||||||||| | |||||||
Sbjct: 13214480 agtggacgacctgagcgagcggctgtcggagctcatggcgaccatggacagcaacagccc 13214421
Query: 304 ccaggccgagatcatccggagcctcctccg 333
|||||||| |||||||| |||||||||||
Sbjct: 13214420 tcaggccgacatcatccgcagcctcctccg 13214391
Score = 97.6 bits (49), Expect = 8e-018
Identities = 70/77 (90%)
Strand = Plus / Minus
Query: 95 ggcaggatcagcgacgacgagatcaacgagctgatctccaagctccaggctctcctcccg 154
|||||||||| ||||||||||||||||||||| ||||||||||| ||| | |||||||||
Sbjct: 13214746 ggcaggatcaccgacgacgagatcaacgagctcatctccaagctgcagtccctcctcccg 13214687
Query: 155 gaatcctcacgccgccg 171
|| ||||| ||||||||
Sbjct: 13214686 gagtcctctcgccgccg 13214670
Score = 60.0 bits (30), Expect = 2e-006
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 207 aggagacgtgcgcctacgtcaagagcctgcaccgggaggtggacgacctc 256
||||||||||| |||| || ||||||||||||||||||||||||||||
Sbjct: 13266099 aggagacgtgcagctacatccggagcctgcaccgggaggtggacgacctc 13266148
Score = 42.1 bits (21), Expect = 0.42
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 129 tctccaagctccaggctctcctccc 153
|||||||||||||||| ||||||||
Sbjct: 13265916 tctccaagctccaggccctcctccc 13265940
>gb|AQ273895.1|AQ273895 nbxb0031L04r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0031L04r, DNA sequence
Length = 826
Score = 103 bits (52), Expect = 1e-019
Identities = 67/72 (93%)
Strand = Plus / Plus
Query: 184 gtcgtcggcgtcgaagcttctgaaggagacgtgcgcctacgtcaagagcctgcaccggga 243
|||||||||||||||||| || |||||||||||| |||| |||||||||||||||||||
Sbjct: 328 gtcgtcggcgtcgaagctgctcaaggagacgtgcagctacatcaagagcctgcaccggga 387
Query: 244 ggtggacgacct 255
||||||||||||
Sbjct: 388 ggtggacgacct 399
>gb|CV729296.1|CV729296 FLO--02-B04.g1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--02-B04,
mRNA sequence
Length = 516
Score = 95.6 bits (48), Expect = 3e-017
Identities = 122/145 (84%), Gaps = 5/145 (3%)
Strand = Plus / Plus
Query: 113 gagatcaacgagctgatctccaagctccaggctctcct-cccggaatcctcacgccgccg 171
|||||||||||||| ||||||||||||||| | ||||| ||| | ||| ||||||||
Sbjct: 167 gagatcaacgagctcatctccaagctccagtccctcctccccag----ctcccgccgccg 222
Query: 172 gaacgcgagccggtcgtcggcgtcgaagcttctgaaggagacgtgcgcctacgtcaagag 231
||| | || | ||||| || ||||||| ||||||||||||||| |||| |||||||
Sbjct: 223 cggcgccaaccaggcgtcgacgacgaagctgctgaaggagacgtgcagctacatcaagag 282
Query: 232 cctgcaccgggaggtggacgacctc 256
|||||||||||||||||||||||||
Sbjct: 283 cctgcaccgggaggtggacgacctc 307
>dbj|AK071601.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023102C01, full
insert sequence
Length = 799
Score = 95.6 bits (48), Expect = 3e-017
Identities = 122/145 (84%), Gaps = 5/145 (3%)
Strand = Plus / Plus
Query: 113 gagatcaacgagctgatctccaagctccaggctctcct-cccggaatcctcacgccgccg 171
|||||||||||||| ||||||||||||||| | ||||| ||| | ||| ||||||||
Sbjct: 149 gagatcaacgagctcatctccaagctccagtccctcctccccag----ctcccgccgccg 204
Query: 172 gaacgcgagccggtcgtcggcgtcgaagcttctgaaggagacgtgcgcctacgtcaagag 231
||| | || | ||||| || ||||||| ||||||||||||||| |||| |||||||
Sbjct: 205 cggcgccaaccaggcgtcgacgacgaagctgctgaaggagacgtgcagctacatcaagag 264
Query: 232 cctgcaccgggaggtggacgacctc 256
|||||||||||||||||||||||||
Sbjct: 265 cctgcaccgggaggtggacgacctc 289
>dbj|AP005848.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OSJNBa0078N11
Length = 155168
Score = 95.6 bits (48), Expect = 3e-017
Identities = 123/148 (83%)
Strand = Plus / Minus
Query: 186 cgtcggcgtcgaagcttctgaaggagacgtgcgcctacgtcaagagcctgcaccgggagg 245
||||| || ||||||| ||||||||||||||| |||| |||||||||| ||||||||||
Sbjct: 78531 cgtcgacgacgaagctgctgaaggagacgtgcaactacatcaagagccttcaccgggagg 78472
Query: 246 tggacgacctctcggagcggctgtcggggctcatggcgaccatggacaacgacagccccc 305
|||| |||||| || |||||||| | |||||||| |||||||| || ||||||||
Sbjct: 78471 tggatgacctcagcgaccggctgtccgacctcatggccaccatggatcacaacagccccg 78412
Query: 306 aggccgagatcatccggagcctcctccg 333
|| ||||||||||| ||| |||||||
Sbjct: 78411 gcgcggagatcatccgcagcatcctccg 78384
Score = 46.1 bits (23), Expect = 0.027
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 116 atcaacgagctgatctccaagctccag 142
||||||||||| |||||||||||||||
Sbjct: 78824 atcaacgagctcatctccaagctccag 78798
>gb|AACV01005419.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005419, whole
genome shotgun sequence
Length = 6043
Score = 95.6 bits (48), Expect = 3e-017
Identities = 123/148 (83%)
Strand = Plus / Minus
Query: 186 cgtcggcgtcgaagcttctgaaggagacgtgcgcctacgtcaagagcctgcaccgggagg 245
||||| || ||||||| ||||||||||||||| |||| |||||||||| ||||||||||
Sbjct: 1439 cgtcgacgacgaagctgctgaaggagacgtgcaactacatcaagagccttcaccgggagg 1380
Query: 246 tggacgacctctcggagcggctgtcggggctcatggcgaccatggacaacgacagccccc 305
|||| |||||| || |||||||| | |||||||| |||||||| || ||||||||
Sbjct: 1379 tggatgacctcagcgaccggctgtccgacctcatggccaccatggatcacaacagccccg 1320
Query: 306 aggccgagatcatccggagcctcctccg 333
|| ||||||||||| ||| |||||||
Sbjct: 1319 gcgcggagatcatccgcagcatcctccg 1292
Score = 46.1 bits (23), Expect = 0.027
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 116 atcaacgagctgatctccaagctccag 142
||||||||||| |||||||||||||||
Sbjct: 1732 atcaacgagctcatctccaagctccag 1706
>ref|XM_467790.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 267
Score = 95.6 bits (48), Expect = 3e-017
Identities = 176/218 (80%), Gaps = 3/218 (1%)
Strand = Plus / Plus
Query: 116 atcaacgagctgatctccaagctccaggctctcctcccggaatcctcacgccgccggaac 175
||||||||||| ||||||||||||||| | || ||||| | ||||||||| || |
Sbjct: 46 atcaacgagctcatctccaagctccagtcgctgctccccaa---ctcacgccgacgcggc 102
Query: 176 gcgagccggtcgtcggcgtcgaagcttctgaaggagacgtgcgcctacgtcaagagcctg 235
| |||| | ||||| || ||||||| ||||||||||||||| |||| ||||||||||
Sbjct: 103 tccagccaggcgtcgacgacgaagctgctgaaggagacgtgcaactacatcaagagcctt 162
Query: 236 caccgggaggtggacgacctctcggagcggctgtcggggctcatggcgaccatggacaac 295
|||||||||||||| |||||| || |||||||| | |||||||| |||||||| ||
Sbjct: 163 caccgggaggtggatgacctcagcgaccggctgtccgacctcatggccaccatggatcac 222
Query: 296 gacagcccccaggccgagatcatccggagcctcctccg 333
|||||||| || ||||||||||| ||| |||||||
Sbjct: 223 aacagccccggcgcggagatcatccgcagcatcctccg 260
>ref|NT_107181.1| Oryza sativa (japonica cultivar-group)
Length = 9248309
Score = 95.6 bits (48), Expect = 3e-017
Identities = 123/148 (83%)
Strand = Plus / Minus
Query: 186 cgtcggcgtcgaagcttctgaaggagacgtgcgcctacgtcaagagcctgcaccgggagg 245
||||| || ||||||| ||||||||||||||| |||| |||||||||| ||||||||||
Sbjct: 6608133 cgtcgacgacgaagctgctgaaggagacgtgcaactacatcaagagccttcaccgggagg 6608074
Query: 246 tggacgacctctcggagcggctgtcggggctcatggcgaccatggacaacgacagccccc 305
|||| |||||| || |||||||| | |||||||| |||||||| || ||||||||
Sbjct: 6608073 tggatgacctcagcgaccggctgtccgacctcatggccaccatggatcacaacagccccg 6608014
Query: 306 aggccgagatcatccggagcctcctccg 333
|| ||||||||||| ||| |||||||
Sbjct: 6608013 gcgcggagatcatccgcagcatcctccg 6607986
Score = 46.1 bits (23), Expect = 0.027
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 116 atcaacgagctgatctccaagctccag 142
||||||||||| |||||||||||||||
Sbjct: 6608426 atcaacgagctcatctccaagctccag 6608400
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 95.6 bits (48), Expect = 3e-017
Identities = 123/148 (83%)
Strand = Plus / Minus
Query: 186 cgtcggcgtcgaagcttctgaaggagacgtgcgcctacgtcaagagcctgcaccgggagg 245
||||| || ||||||| ||||||||||||||| |||| |||||||||| ||||||||||
Sbjct: 18004282 cgtcgacgacgaagctgctgaaggagacgtgcaactacatcaagagccttcaccgggagg 18004223
Query: 246 tggacgacctctcggagcggctgtcggggctcatggcgaccatggacaacgacagccccc 305
|||| |||||| || |||||||| | |||||||| |||||||| || ||||||||
Sbjct: 18004222 tggatgacctcagcgaccggctgtccgacctcatggccaccatggatcacaacagccccg 18004163
Query: 306 aggccgagatcatccggagcctcctccg 333
|| ||||||||||| ||| |||||||
Sbjct: 18004162 gcgcggagatcatccgcagcatcctccg 18004135
Score = 46.1 bits (23), Expect = 0.027
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 116 atcaacgagctgatctccaagctccag 142
||||||||||| |||||||||||||||
Sbjct: 18004575 atcaacgagctcatctccaagctccag 18004549
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 95.6 bits (48), Expect = 3e-017
Identities = 123/148 (83%)
Strand = Plus / Minus
Query: 186 cgtcggcgtcgaagcttctgaaggagacgtgcgcctacgtcaagagcctgcaccgggagg 245
||||| || ||||||| ||||||||||||||| |||| |||||||||| ||||||||||
Sbjct: 31457346 cgtcgacgacgaagctgctgaaggagacgtgcaactacatcaagagccttcaccgggagg 31457287
Query: 246 tggacgacctctcggagcggctgtcggggctcatggcgaccatggacaacgacagccccc 305
|||| |||||| || |||||||| | |||||||| |||||||| || ||||||||
Sbjct: 31457286 tggatgacctcagcgaccggctgtccgacctcatggccaccatggatcacaacagccccg 31457227
Query: 306 aggccgagatcatccggagcctcctccg 333
|| ||||||||||| ||| |||||||
Sbjct: 31457226 gcgcggagatcatccgcagcatcctccg 31457199
Score = 46.1 bits (23), Expect = 0.027
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 116 atcaacgagctgatctccaagctccag 142
||||||||||| |||||||||||||||
Sbjct: 31457639 atcaacgagctcatctccaagctccag 31457613
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 95.6 bits (48), Expect = 3e-017
Identities = 123/148 (83%)
Strand = Plus / Minus
Query: 186 cgtcggcgtcgaagcttctgaaggagacgtgcgcctacgtcaagagcctgcaccgggagg 245
||||| || ||||||| ||||||||||||||| |||| |||||||||| ||||||||||
Sbjct: 31443134 cgtcgacgacgaagctgctgaaggagacgtgcaactacatcaagagccttcaccgggagg 31443075
Query: 246 tggacgacctctcggagcggctgtcggggctcatggcgaccatggacaacgacagccccc 305
|||| |||||| || |||||||| | |||||||| |||||||| || ||||||||
Sbjct: 31443074 tggatgacctcagcgaccggctgtccgacctcatggccaccatggatcacaacagccccg 31443015
Query: 306 aggccgagatcatccggagcctcctccg 333
|| ||||||||||| ||| |||||||
Sbjct: 31443014 gcgcggagatcatccgcagcatcctccg 31442987
Score = 46.1 bits (23), Expect = 0.027
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 116 atcaacgagctgatctccaagctccag 142
||||||||||| |||||||||||||||
Sbjct: 31443427 atcaacgagctcatctccaagctccag 31443401
>dbj|AP003513.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0690H04
Length = 137319
Score = 93.7 bits (47), Expect = 1e-016
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 186 cgtcggcgtcgaagcttctgaaggagacgtgcgcctacgtcaagagcctgcaccgggagg 245
||||| || ||||||| ||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 84361 cgtcgacgacgaagctgctgaaggagacgtgcagctacatcaagagcctgcaccgggagg 84420
Query: 246 tggacgacctc 256
|||||||||||
Sbjct: 84421 tggacgacctc 84431
Score = 58.0 bits (29), Expect = 7e-006
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 113 gagatcaacgagctgatctccaagctccaggctctcctccc 153
|||||||||||||| ||||||||||||||| | ||||||||
Sbjct: 84037 gagatcaacgagctcatctccaagctccagtccctcctccc 84077
>dbj|AP003569.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0425F05
Length = 162858
Score = 93.7 bits (47), Expect = 1e-016
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 186 cgtcggcgtcgaagcttctgaaggagacgtgcgcctacgtcaagagcctgcaccgggagg 245
||||| || ||||||| ||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 2111 cgtcgacgacgaagctgctgaaggagacgtgcagctacatcaagagcctgcaccgggagg 2170
Query: 246 tggacgacctc 256
|||||||||||
Sbjct: 2171 tggacgacctc 2181
Score = 58.0 bits (29), Expect = 7e-006
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 113 gagatcaacgagctgatctccaagctccaggctctcctccc 153
|||||||||||||| ||||||||||||||| | ||||||||
Sbjct: 1787 gagatcaacgagctcatctccaagctccagtccctcctccc 1827
>gb|AACV01013344.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg013344, whole
genome shotgun sequence
Length = 27471
Score = 93.7 bits (47), Expect = 1e-016
Identities = 65/71 (91%)
Strand = Plus / Minus
Query: 186 cgtcggcgtcgaagcttctgaaggagacgtgcgcctacgtcaagagcctgcaccgggagg 245
||||| || ||||||| ||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 23297 cgtcgacgacgaagctgctgaaggagacgtgcagctacatcaagagcctgcaccgggagg 23238
Query: 246 tggacgacctc 256
|||||||||||
Sbjct: 23237 tggacgacctc 23227
Score = 58.0 bits (29), Expect = 7e-006
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 113 gagatcaacgagctgatctccaagctccaggctctcctccc 153
|||||||||||||| ||||||||||||||| | ||||||||
Sbjct: 23621 gagatcaacgagctcatctccaagctccagtccctcctccc 23581
>ref|NT_079873.2| Oryza sativa (japonica cultivar-group)
Length = 5116111
Score = 93.7 bits (47), Expect = 1e-016
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 186 cgtcggcgtcgaagcttctgaaggagacgtgcgcctacgtcaagagcctgcaccgggagg 245
||||| || ||||||| ||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 2259565 cgtcgacgacgaagctgctgaaggagacgtgcagctacatcaagagcctgcaccgggagg 2259624
Query: 246 tggacgacctc 256
|||||||||||
Sbjct: 2259625 tggacgacctc 2259635
Score = 58.0 bits (29), Expect = 7e-006
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 113 gagatcaacgagctgatctccaagctccaggctctcctccc 153
|||||||||||||| ||||||||||||||| | ||||||||
Sbjct: 2259241 gagatcaacgagctcatctccaagctccagtccctcctccc 2259281
>gb|CH401209.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000046 genomic
scaffold, whole genome shotgun sequence
Length = 8607552
Score = 93.7 bits (47), Expect = 1e-016
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 186 cgtcggcgtcgaagcttctgaaggagacgtgcgcctacgtcaagagcctgcaccgggagg 245
||||| || ||||||| ||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 6496207 cgtcgacgacgaagctgctgaaggagacgtgcagctacatcaagagcctgcaccgggagg 6496266
Query: 246 tggacgacctc 256
|||||||||||
Sbjct: 6496267 tggacgacctc 6496277
Score = 58.0 bits (29), Expect = 7e-006
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 113 gagatcaacgagctgatctccaagctccaggctctcctccc 153
|||||||||||||| ||||||||||||||| | ||||||||
Sbjct: 6495883 gagatcaacgagctcatctccaagctccagtccctcctccc 6495923
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 93.7 bits (47), Expect = 1e-016
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 186 cgtcggcgtcgaagcttctgaaggagacgtgcgcctacgtcaagagcctgcaccgggagg 245
||||| || ||||||| ||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 6496207 cgtcgacgacgaagctgctgaaggagacgtgcagctacatcaagagcctgcaccgggagg 6496266
Query: 246 tggacgacctc 256
|||||||||||
Sbjct: 6496267 tggacgacctc 6496277
Score = 58.0 bits (29), Expect = 7e-006
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 113 gagatcaacgagctgatctccaagctccaggctctcctccc 153
|||||||||||||| ||||||||||||||| | ||||||||
Sbjct: 6495883 gagatcaacgagctcatctccaagctccagtccctcctccc 6495923
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 93.7 bits (47), Expect = 1e-016
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 186 cgtcggcgtcgaagcttctgaaggagacgtgcgcctacgtcaagagcctgcaccgggagg 245
||||| || ||||||| ||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 6567985 cgtcgacgacgaagctgctgaaggagacgtgcagctacatcaagagcctgcaccgggagg 6568044
Query: 246 tggacgacctc 256
|||||||||||
Sbjct: 6568045 tggacgacctc 6568055
Score = 58.0 bits (29), Expect = 7e-006
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 113 gagatcaacgagctgatctccaagctccaggctctcctccc 153
|||||||||||||| ||||||||||||||| | ||||||||
Sbjct: 6567661 gagatcaacgagctcatctccaagctccagtccctcctccc 6567701
>gb|CV733228.1|CV733228 FLO--08-A18.g1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--08-A18,
mRNA sequence
Length = 527
Score = 87.7 bits (44), Expect = 8e-015
Identities = 56/60 (93%)
Strand = Plus / Plus
Query: 197 aagcttctgaaggagacgtgcgcctacgtcaagagcctgcaccgggaggtggacgacctc 256
||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct: 276 aagctgctgaaggagacgtgcagctacatcaagagcctgcaccgggaggtggacgacctc 335
Score = 58.0 bits (29), Expect = 7e-006
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 113 gagatcaacgagctgatctccaagctccaggctctcctccc 153
|||||||||||||| ||||||||||||||| | ||||||||
Sbjct: 195 gagatcaacgagctcatctccaagctccagtccctcctccc 235
>gb|AACV01019959.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg019959, whole
genome shotgun sequence
Length = 13053
Score = 60.0 bits (30), Expect = 2e-006
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 207 aggagacgtgcgcctacgtcaagagcctgcaccgggaggtggacgacctc 256
||||||||||| |||| || ||||||||||||||||||||||||||||
Sbjct: 4911 aggagacgtgcagctacatccggagcctgcaccgggaggtggacgacctc 4862
Score = 42.1 bits (21), Expect = 0.42
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 129 tctccaagctccaggctctcctccc 153
|||||||||||||||| ||||||||
Sbjct: 5094 tctccaagctccaggccctcctccc 5070
>gb|CH401242.1| Oryza sativa (japonica cultivar-group) chromosome 9 scaffold000079 genomic
scaffold, whole genome shotgun sequence
Length = 12069826
Score = 60.0 bits (30), Expect = 2e-006
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 207 aggagacgtgcgcctacgtcaagagcctgcaccgggaggtggacgacctc 256
||||||||||| |||| || ||||||||||||||||||||||||||||
Sbjct: 3785728 aggagacgtgcagctacatccggagcctgcaccgggaggtggacgacctc 3785777
Score = 42.1 bits (21), Expect = 0.42
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 129 tctccaagctccaggctctcctccc 153
|||||||||||||||| ||||||||
Sbjct: 3785545 tctccaagctccaggccctcctccc 3785569
>gb|CM000146.1| Oryza sativa (japonica cultivar-group) chromosome 9, whole genome shotgun
sequence
Length = 21543637
Score = 60.0 bits (30), Expect = 2e-006
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 207 aggagacgtgcgcctacgtcaagagcctgcaccgggaggtggacgacctc 256
||||||||||| |||| || ||||||||||||||||||||||||||||
Sbjct: 13259539 aggagacgtgcagctacatccggagcctgcaccgggaggtggacgacctc 13259588
Score = 42.1 bits (21), Expect = 0.42
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 129 tctccaagctccaggctctcctccc 153
|||||||||||||||| ||||||||
Sbjct: 13259356 tctccaagctccaggccctcctccc 13259380
>gb|AACV01010560.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010560, whole
genome shotgun sequence
Length = 6264
Score = 52.0 bits (26), Expect = 4e-004
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 207 aggagacgtgcgcctacgtcaagagcctgcaccgggaggtggacgacctc 256
||||||||||| |||| ||| ||||||||||| |||||||||| |||||
Sbjct: 2658 aggagacgtgcagctacatcaggagcctgcaccaggaggtggacaacctc 2707
>ref|XM_474070.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 315
Score = 52.0 bits (26), Expect = 4e-004
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 207 aggagacgtgcgcctacgtcaagagcctgcaccgggaggtggacgacctc 256
||||||||||| |||| ||| ||||||||||| |||||||||| |||||
Sbjct: 185 aggagacgtgcagctacatcaggagcctgcaccaggaggtggacaacctc 234
>ref|NT_107201.1| Oryza sativa (japonica cultivar-group)
Length = 2893592
Score = 52.0 bits (26), Expect = 4e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 207 aggagacgtgcgcctacgtcaagagcctgcaccgggaggtggacgacctc 256
||||||||||| |||| ||| ||||||||||| |||||||||| |||||
Sbjct: 86818 aggagacgtgcagctacatcaggagcctgcaccaggaggtggacaacctc 86769
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 52.0 bits (26), Expect = 4e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 207 aggagacgtgcgcctacgtcaagagcctgcaccgggaggtggacgacctc 256
||||||||||| |||| ||| ||||||||||| |||||||||| |||||
Sbjct: 10367393 aggagacgtgcagctacatcaggagcctgcaccaggaggtggacaacctc 10367344
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 52.0 bits (26), Expect = 4e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 207 aggagacgtgcgcctacgtcaagagcctgcaccgggaggtggacgacctc 256
||||||||||| |||| ||| ||||||||||| |||||||||| |||||
Sbjct: 29511492 aggagacgtgcagctacatcaggagcctgcaccaggaggtggacaacctc 29511443
>emb|AL731607.3|OSJN00250 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0063C18,
complete sequence
Length = 150416
Score = 52.0 bits (26), Expect = 4e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 207 aggagacgtgcgcctacgtcaagagcctgcaccgggaggtggacgacctc 256
||||||||||| |||| ||| ||||||||||| |||||||||| |||||
Sbjct: 51232 aggagacgtgcagctacatcaggagcctgcaccaggaggtggacaacctc 51183
>emb|AL606455.3|OSJN00015 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0079B02,
complete sequence
Length = 126659
Score = 52.0 bits (26), Expect = 4e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 207 aggagacgtgcgcctacgtcaagagcctgcaccgggaggtggacgacctc 256
||||||||||| |||| ||| ||||||||||| |||||||||| |||||
Sbjct: 86818 aggagacgtgcagctacatcaggagcctgcaccaggaggtggacaacctc 86769
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 52.0 bits (26), Expect = 4e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 207 aggagacgtgcgcctacgtcaagagcctgcaccgggaggtggacgacctc 256
||||||||||| |||| ||| ||||||||||| |||||||||| |||||
Sbjct: 32691797 aggagacgtgcagctacatcaggagcctgcaccaggaggtggacaacctc 32691748
>gb|AQ288090.1|AQ288090 nbxb0032E14r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0032E14r, DNA sequence
Length = 336
Score = 46.1 bits (23), Expect = 0.027
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 98 aggatcagcgacgacgagatcaacgagctgatctc 132
||||||| |||||| |||||||||||||| |||||
Sbjct: 35 aggatcaccgacgaggagatcaacgagctcatctc 1
>gb|AU030987.1|AU030987 AU030987 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E60530_1A, mRNA sequence
Length = 367
Score = 46.1 bits (23), Expect = 0.027
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 116 atcaacgagctgatctccaagctccag 142
||||||||||| |||||||||||||||
Sbjct: 275 atcaacgagctcatctccaagctccag 301
>dbj|AP003740.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OJ1118_B03
Length = 108992
Score = 42.1 bits (21), Expect = 0.42
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 100 gatcagcgacgacgagatcaacgag 124
||||||||||| |||||||||||||
Sbjct: 93341 gatcagcgacggcgagatcaacgag 93317
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,271,597
Number of Sequences: 438736
Number of extensions: 1271597
Number of successful extensions: 8988
Number of sequences better than 0.5: 56
Number of HSP's better than 0.5 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8478
Number of HSP's gapped (non-prelim): 501
length of query: 744
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 723
effective length of database: 2,791,206,460
effective search space: 2018042270580
effective search space used: 2018042270580
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)