BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3995289.2.1
(559 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AP005544.3| Oryza sativa (japonica cultivar-group) geno... 246 1e-062
gb|AACV01002223.1| Oryza sativa (japonica cultivar-group) c... 246 1e-062
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 246 1e-062
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 246 1e-062
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 246 1e-062
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 246 1e-062
dbj|AK071683.1| Oryza sativa (japonica cultivar-group) cDNA... 244 4e-062
dbj|AK099177.1| Oryza sativa (japonica cultivar-group) cDNA... 244 4e-062
ref|XM_483787.1| Oryza sativa (japonica cultivar-group), mRNA 244 4e-062
ref|XM_507340.1| PREDICTED Oryza sativa (japonica cultivar-... 244 4e-062
dbj|AK106679.1| Oryza sativa (japonica cultivar-group) cDNA... 167 8e-039
dbj|AP004090.3| Oryza sativa (japonica cultivar-group) geno... 167 8e-039
gb|AACV01003203.1| Oryza sativa (japonica cultivar-group) c... 167 8e-039
ref|XM_463858.1| Oryza sativa (japonica cultivar-group), mRNA 167 8e-039
dbj|AP004867.2| Oryza sativa (japonica cultivar-group) geno... 167 8e-039
ref|NT_107175.1| Oryza sativa (japonica cultivar-group) 167 8e-039
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 167 8e-039
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 167 8e-039
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 167 8e-039
gb|AU098334.1|AU098334 AU098334 Rice cDNA from immature lea... 137 7e-030
gb|AU032069.1|AU032069 AU032069 Rice root Oryza sativa (jap... 131 4e-028
gb|AU172776.1|AU172776 AU172776 Rice panicle shorter than 3... 52 3e-004
gb|AACV01002128.1| Oryza sativa (japonica cultivar-group) c... 52 3e-004
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 52 3e-004
ref|NM_192095.1| Oryza sativa (japonica cultivar-group), p... 52 3e-004
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 52 3e-004
dbj|AP003455.2| Oryza sativa (japonica cultivar-group) geno... 52 3e-004
dbj|AP003452.3| Oryza sativa (japonica cultivar-group) geno... 52 3e-004
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 52 3e-004
gb|C20278.1|C20278 C20278 Rice panicle at ripening stage Or... 46 0.020
dbj|AP003885.1| Oryza sativa (japonica cultivar-group) chro... 46 0.020
dbj|AK059408.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.020
dbj|AK104119.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.020
dbj|AP004463.2| Oryza sativa (japonica cultivar-group) geno... 46 0.020
gb|AACV01025750.1| Oryza sativa (japonica cultivar-group) C... 46 0.020
gb|AACV01025969.1| Oryza sativa (japonica cultivar-group) C... 46 0.020
ref|NM_188963.2| Oryza sativa (japonica cultivar-group), mRNA 46 0.020
ref|XM_507234.1| PREDICTED Oryza sativa (japonica cultivar-... 46 0.020
gb|CH401376.1| Oryza sativa (japonica cultivar-group) scaff... 46 0.020
gb|CH401312.1| Oryza sativa (japonica cultivar-group) scaff... 46 0.020
dbj|AK111454.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.079
dbj|AP005683.2| Oryza sativa (japonica cultivar-group) geno... 44 0.079
gb|AACV01018660.1| Oryza sativa (japonica cultivar-group) c... 44 0.079
ref|NM_190000.1| Oryza sativa (japonica cultivar-group), p... 44 0.079
ref|NT_079923.2| Oryza sativa (japonica cultivar-group) 44 0.079
ref|NT_107084.1| Oryza sativa (japonica cultivar-group) 44 0.079
dbj|AP004330.3| Oryza sativa (japonica cultivar-group) geno... 44 0.079
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.079
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.079
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 44 0.079
gb|D39742.1|D39742 RICS1324A Rice shoot Oryza sativa (japon... 42 0.31
gb|AU068129.1|AU068129 AU068129 Rice callus Oryza sativa (j... 42 0.31
gb|CB658157.1|CB658157 OSJNEc13P17.f OSJNEc Oryza sativa (j... 42 0.31
gb|CB677530.1|CB677530 OSJNEe14I24.f OSJNEe Oryza sativa (j... 42 0.31
gb|CB683910.1|CB683910 OSJNEf12O22.f OSJNEf Oryza sativa (j... 42 0.31
gb|D25004.1|D25004 RICR2926A Rice root Oryza sativa (japoni... 42 0.31
emb|AJ427978.1|OSA427978 Oryza sativa HAK9 gene for putativ... 42 0.31
dbj|AP003757.2| Oryza sativa (japonica cultivar-group) geno... 42 0.31
dbj|AK070738.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.31
dbj|AK072841.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.31
dbj|AK099030.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.31
dbj|AK102101.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.31
dbj|AK109150.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.31
gb|AC132214.1| Genomic sequence for Oryza sativa, Nipponbar... 42 0.31
gb|AC084405.6| Oryza sativa chromosome 3 BAC OSJNBa0044H10 ... 42 0.31
gb|AC105928.2| Oryza sativa (japonica cultivar-group) chrom... 42 0.31
gb|AC137069.2| Genomic sequence for Oryza sativa, Nipponbar... 42 0.31
emb|AL731622.1|OSJN00265 Oryza sativa genomic DNA, chromoso... 42 0.31
gb|AC097112.2| Oryza sativa (japonica cultivar-group) chrom... 42 0.31
dbj|AP004083.2| Oryza sativa (japonica cultivar-group) geno... 42 0.31
dbj|AP003980.3| Oryza sativa (japonica cultivar-group) geno... 42 0.31
gb|AC130732.2| Oryza sativa (japonica cultivar-group) chrom... 42 0.31
gb|AC104277.2| Oryza sativa (japonica cultivar-group) chrom... 42 0.31
gb|AC104283.2| Oryza sativa (japonica cultivar-group) chrom... 42 0.31
gb|AACV01000362.1| Oryza sativa (japonica cultivar-group) c... 42 0.31
gb|AACV01003768.1| Oryza sativa (japonica cultivar-group) c... 42 0.31
gb|AACV01004917.1| Oryza sativa (japonica cultivar-group) c... 42 0.31
gb|AACV01006086.1| Oryza sativa (japonica cultivar-group) c... 42 0.31
gb|AACV01009195.1| Oryza sativa (japonica cultivar-group) c... 42 0.31
gb|AACV01010614.1| Oryza sativa (japonica cultivar-group) c... 42 0.31
gb|AACV01010871.1| Oryza sativa (japonica cultivar-group) c... 42 0.31
gb|AACV01012632.1| Oryza sativa (japonica cultivar-group) c... 42 0.31
gb|AACV01017021.1| Oryza sativa (japonica cultivar-group) c... 42 0.31
gb|AACV01018714.1| Oryza sativa (japonica cultivar-group) c... 42 0.31
ref|XM_464381.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.31
ref|XM_466764.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.31
ref|XM_475602.1| Oryza sativa (japonica cultivar-group), p... 42 0.31
ref|XM_476120.1| Oryza sativa (japonica cultivar-group), p... 42 0.31
ref|XM_479530.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.31
ref|XM_482926.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.31
ref|NT_107177.1| Oryza sativa (japonica cultivar-group) 42 0.31
ref|NT_107189.1| Oryza sativa (japonica cultivar-group) 42 0.31
ref|NT_107195.1| Oryza sativa (japonica cultivar-group) 42 0.31
ref|NT_107201.1| Oryza sativa (japonica cultivar-group) 42 0.31
ref|NT_107219.1| Oryza sativa (japonica cultivar-group) 42 0.31
ref|NT_107224.1| Oryza sativa (japonica cultivar-group) 42 0.31
dbj|AP003990.3| Oryza sativa (japonica cultivar-group) geno... 42 0.31
dbj|AP004000.3| Oryza sativa (japonica cultivar-group) geno... 42 0.31
dbj|AP005510.3| Oryza sativa (japonica cultivar-group) geno... 42 0.31
ref|NT_107192.1| Oryza sativa (japonica cultivar-group) 42 0.31
ref|NT_107216.1| Oryza sativa (japonica cultivar-group) 42 0.31
dbj|AP004399.3| Oryza sativa (japonica cultivar-group) geno... 42 0.31
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 42 0.31
ref|NT_107178.1| Oryza sativa (japonica cultivar-group) 42 0.31
ref|NT_107180.1| Oryza sativa (japonica cultivar-group) 42 0.31
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.31
gb|CH401206.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.31
gb|CH401191.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.31
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.31
gb|CH401189.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.31
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.31
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.31
gb|CH401164.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.31
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.31
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.31
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.31
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.31
emb|AL731595.1|OSJN00238 Oryza sativa genomic DNA, chromoso... 42 0.31
emb|AL606685.3|OSJN00090 Oryza sativa genomic DNA, chromoso... 42 0.31
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 42 0.31
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 42 0.31
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 42 0.31
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 42 0.31
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.31
>dbj|AP005544.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0604E01
Length = 159049
Score = 246 bits (124), Expect = 1e-062
Identities = 258/303 (85%)
Strand = Plus / Plus
Query: 55 tgcaggaaagacaggccgcagctgaccctcaacttcgtcgtccagtttttctttctcgcg 114
|||||||| || ||||||||||||| || | |||||| || ||||| ||| | || |||
Sbjct: 109469 tgcaggaaggatcggccgcagctgacgctgagcttcgtggtgcagttcttcctgctggcg 109528
Query: 115 ctctgcggcatcacggcgaaccaagggttttacctcctgggcctggacaacacgtcgccg 174
|| ||||||||||| || ||||| || || |||||||| || || |||||||| || |||
Sbjct: 109529 ctgtgcggcatcaccgccaaccagggcttctacctcctcggactcgacaacacctccccg 109588
Query: 175 acgttcgcgtccgccatccagaactcggtcccggccatcaccttcgccatggccgcggcg 234
|| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 109589 accttcgcctccgccatccagaactccgtcccggccatcaccttcgccatggccgccgcg 109648
Query: 235 ctgcggatcgagaaggtccggctggaccgccgcgacggcgtagccaaggtggcgggcacg 294
|| || |||||| ||||| || ||||||||||||||||| ||||||||| ||||||
Sbjct: 109649 ctccgcatcgagcgcgtccgcctcgaccgccgcgacggcgtcgccaaggtgctcggcacg 109708
Query: 295 ctggcgtgcgtggcggnggcatccgtcatcacgctctacaagggccccaccatcttcggt 354
||||| ||||| || | || |||||||||||||||||||||||||| ||||||||||||
Sbjct: 109709 ctggcctgcgtcgccggcgcctccgtcatcacgctctacaagggccctaccatcttcggt 109768
Query: 355 ccc 357
|||
Sbjct: 109769 ccc 109771
Score = 176 bits (89), Expect = 8e-042
Identities = 127/140 (90%)
Strand = Plus / Plus
Query: 412 aagaactggacgctgggntgcgtgtacctgatcgggcactgcctgtcgtggtccggctgg 471
||||||||||||||||| ||||||||| ||||||||||||||||||||||||| || |||
Sbjct: 109832 aagaactggacgctgggctgcgtgtacttgatcgggcactgcctgtcgtggtcgggatgg 109891
Query: 472 ctggtgctgcaggctcccgtgctgaagaagtacccggcacggctggccgtcacctcctac 531
|||||||||||||| || |||||||||||||||||||| ||||| | || || || |||
Sbjct: 109892 ctggtgctgcaggcgccggtgctgaagaagtacccggcgaggctgtcggtgacgtcatac 109951
Query: 532 acctgcttcttcggcgtcat 551
||||||||||||||||||||
Sbjct: 109952 acctgcttcttcggcgtcat 109971
>gb|AACV01002223.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002223, whole
genome shotgun sequence
Length = 13972
Score = 246 bits (124), Expect = 1e-062
Identities = 258/303 (85%)
Strand = Plus / Minus
Query: 55 tgcaggaaagacaggccgcagctgaccctcaacttcgtcgtccagtttttctttctcgcg 114
|||||||| || ||||||||||||| || | |||||| || ||||| ||| | || |||
Sbjct: 9859 tgcaggaaggatcggccgcagctgacgctgagcttcgtggtgcagttcttcctgctggcg 9800
Query: 115 ctctgcggcatcacggcgaaccaagggttttacctcctgggcctggacaacacgtcgccg 174
|| ||||||||||| || ||||| || || |||||||| || || |||||||| || |||
Sbjct: 9799 ctgtgcggcatcaccgccaaccagggcttctacctcctcggactcgacaacacctccccg 9740
Query: 175 acgttcgcgtccgccatccagaactcggtcccggccatcaccttcgccatggccgcggcg 234
|| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 9739 accttcgcctccgccatccagaactccgtcccggccatcaccttcgccatggccgccgcg 9680
Query: 235 ctgcggatcgagaaggtccggctggaccgccgcgacggcgtagccaaggtggcgggcacg 294
|| || |||||| ||||| || ||||||||||||||||| ||||||||| ||||||
Sbjct: 9679 ctccgcatcgagcgcgtccgcctcgaccgccgcgacggcgtcgccaaggtgctcggcacg 9620
Query: 295 ctggcgtgcgtggcggnggcatccgtcatcacgctctacaagggccccaccatcttcggt 354
||||| ||||| || | || |||||||||||||||||||||||||| ||||||||||||
Sbjct: 9619 ctggcctgcgtcgccggcgcctccgtcatcacgctctacaagggccctaccatcttcggt 9560
Query: 355 ccc 357
|||
Sbjct: 9559 ccc 9557
Score = 176 bits (89), Expect = 8e-042
Identities = 127/140 (90%)
Strand = Plus / Minus
Query: 412 aagaactggacgctgggntgcgtgtacctgatcgggcactgcctgtcgtggtccggctgg 471
||||||||||||||||| ||||||||| ||||||||||||||||||||||||| || |||
Sbjct: 9496 aagaactggacgctgggctgcgtgtacttgatcgggcactgcctgtcgtggtcgggatgg 9437
Query: 472 ctggtgctgcaggctcccgtgctgaagaagtacccggcacggctggccgtcacctcctac 531
|||||||||||||| || |||||||||||||||||||| ||||| | || || || |||
Sbjct: 9436 ctggtgctgcaggcgccggtgctgaagaagtacccggcgaggctgtcggtgacgtcatac 9377
Query: 532 acctgcttcttcggcgtcat 551
||||||||||||||||||||
Sbjct: 9376 acctgcttcttcggcgtcat 9357
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 246 bits (124), Expect = 1e-062
Identities = 258/303 (85%)
Strand = Plus / Plus
Query: 55 tgcaggaaagacaggccgcagctgaccctcaacttcgtcgtccagtttttctttctcgcg 114
|||||||| || ||||||||||||| || | |||||| || ||||| ||| | || |||
Sbjct: 27873887 tgcaggaaggatcggccgcagctgacgctgagcttcgtggtgcagttcttcctgctggcg 27873946
Query: 115 ctctgcggcatcacggcgaaccaagggttttacctcctgggcctggacaacacgtcgccg 174
|| ||||||||||| || ||||| || || |||||||| || || |||||||| || |||
Sbjct: 27873947 ctgtgcggcatcaccgccaaccagggcttctacctcctcggactcgacaacacctccccg 27874006
Query: 175 acgttcgcgtccgccatccagaactcggtcccggccatcaccttcgccatggccgcggcg 234
|| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 27874007 accttcgcctccgccatccagaactccgtcccggccatcaccttcgccatggccgccgcg 27874066
Query: 235 ctgcggatcgagaaggtccggctggaccgccgcgacggcgtagccaaggtggcgggcacg 294
|| || |||||| ||||| || ||||||||||||||||| ||||||||| ||||||
Sbjct: 27874067 ctccgcatcgagcgcgtccgcctcgaccgccgcgacggcgtcgccaaggtgctcggcacg 27874126
Query: 295 ctggcgtgcgtggcggnggcatccgtcatcacgctctacaagggccccaccatcttcggt 354
||||| ||||| || | || |||||||||||||||||||||||||| ||||||||||||
Sbjct: 27874127 ctggcctgcgtcgccggcgcctccgtcatcacgctctacaagggccctaccatcttcggt 27874186
Query: 355 ccc 357
|||
Sbjct: 27874187 ccc 27874189
Score = 176 bits (89), Expect = 8e-042
Identities = 127/140 (90%)
Strand = Plus / Plus
Query: 412 aagaactggacgctgggntgcgtgtacctgatcgggcactgcctgtcgtggtccggctgg 471
||||||||||||||||| ||||||||| ||||||||||||||||||||||||| || |||
Sbjct: 27874250 aagaactggacgctgggctgcgtgtacttgatcgggcactgcctgtcgtggtcgggatgg 27874309
Query: 472 ctggtgctgcaggctcccgtgctgaagaagtacccggcacggctggccgtcacctcctac 531
|||||||||||||| || |||||||||||||||||||| ||||| | || || || |||
Sbjct: 27874310 ctggtgctgcaggcgccggtgctgaagaagtacccggcgaggctgtcggtgacgtcatac 27874369
Query: 532 acctgcttcttcggcgtcat 551
||||||||||||||||||||
Sbjct: 27874370 acctgcttcttcggcgtcat 27874389
Score = 46.1 bits (23), Expect = 0.020
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 357 cggcggcggcggcggcctcgagc 379
|||||||||||||||||||||||
Sbjct: 20214797 cggcggcggcggcggcctcgagc 20214819
Score = 42.1 bits (21), Expect = 0.31
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 355 cccggcggcggcggcggcctc 375
|||||||||||||||||||||
Sbjct: 23163372 cccggcggcggcggcggcctc 23163392
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 246 bits (124), Expect = 1e-062
Identities = 258/303 (85%)
Strand = Plus / Plus
Query: 55 tgcaggaaagacaggccgcagctgaccctcaacttcgtcgtccagtttttctttctcgcg 114
|||||||| || ||||||||||||| || | |||||| || ||||| ||| | || |||
Sbjct: 4132100 tgcaggaaggatcggccgcagctgacgctgagcttcgtggtgcagttcttcctgctggcg 4132159
Query: 115 ctctgcggcatcacggcgaaccaagggttttacctcctgggcctggacaacacgtcgccg 174
|| ||||||||||| || ||||| || || |||||||| || || |||||||| || |||
Sbjct: 4132160 ctgtgcggcatcaccgccaaccagggcttctacctcctcggactcgacaacacctccccg 4132219
Query: 175 acgttcgcgtccgccatccagaactcggtcccggccatcaccttcgccatggccgcggcg 234
|| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 4132220 accttcgcctccgccatccagaactccgtcccggccatcaccttcgccatggccgccgcg 4132279
Query: 235 ctgcggatcgagaaggtccggctggaccgccgcgacggcgtagccaaggtggcgggcacg 294
|| || |||||| ||||| || ||||||||||||||||| ||||||||| ||||||
Sbjct: 4132280 ctccgcatcgagcgcgtccgcctcgaccgccgcgacggcgtcgccaaggtgctcggcacg 4132339
Query: 295 ctggcgtgcgtggcggnggcatccgtcatcacgctctacaagggccccaccatcttcggt 354
||||| ||||| || | || |||||||||||||||||||||||||| ||||||||||||
Sbjct: 4132340 ctggcctgcgtcgccggcgcctccgtcatcacgctctacaagggccctaccatcttcggt 4132399
Query: 355 ccc 357
|||
Sbjct: 4132400 ccc 4132402
Score = 176 bits (89), Expect = 8e-042
Identities = 127/140 (90%)
Strand = Plus / Plus
Query: 412 aagaactggacgctgggntgcgtgtacctgatcgggcactgcctgtcgtggtccggctgg 471
||||||||||||||||| ||||||||| ||||||||||||||||||||||||| || |||
Sbjct: 4132463 aagaactggacgctgggctgcgtgtacttgatcgggcactgcctgtcgtggtcgggatgg 4132522
Query: 472 ctggtgctgcaggctcccgtgctgaagaagtacccggcacggctggccgtcacctcctac 531
|||||||||||||| || |||||||||||||||||||| ||||| | || || || |||
Sbjct: 4132523 ctggtgctgcaggcgccggtgctgaagaagtacccggcgaggctgtcggtgacgtcatac 4132582
Query: 532 acctgcttcttcggcgtcat 551
||||||||||||||||||||
Sbjct: 4132583 acctgcttcttcggcgtcat 4132602
Score = 52.0 bits (26), Expect = 3e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 357 cggcggcggcggcggcctcgagctggcgtc 386
|||||||||||||||||||||| |||||||
Sbjct: 2766686 cggcggcggcggcggcctcgagatggcgtc 2766715
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 246 bits (124), Expect = 1e-062
Identities = 258/303 (85%)
Strand = Plus / Plus
Query: 55 tgcaggaaagacaggccgcagctgaccctcaacttcgtcgtccagtttttctttctcgcg 114
|||||||| || ||||||||||||| || | |||||| || ||||| ||| | || |||
Sbjct: 29333821 tgcaggaaggatcggccgcagctgacgctgagcttcgtggtgcagttcttcctgctggcg 29333880
Query: 115 ctctgcggcatcacggcgaaccaagggttttacctcctgggcctggacaacacgtcgccg 174
|| ||||||||||| || ||||| || || |||||||| || || |||||||| || |||
Sbjct: 29333881 ctgtgcggcatcaccgccaaccagggcttctacctcctcggactcgacaacacctccccg 29333940
Query: 175 acgttcgcgtccgccatccagaactcggtcccggccatcaccttcgccatggccgcggcg 234
|| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 29333941 accttcgcctccgccatccagaactccgtcccggccatcaccttcgccatggccgccgcg 29334000
Query: 235 ctgcggatcgagaaggtccggctggaccgccgcgacggcgtagccaaggtggcgggcacg 294
|| || |||||| ||||| || ||||||||||||||||| ||||||||| ||||||
Sbjct: 29334001 ctccgcatcgagcgcgtccgcctcgaccgccgcgacggcgtcgccaaggtgctcggcacg 29334060
Query: 295 ctggcgtgcgtggcggnggcatccgtcatcacgctctacaagggccccaccatcttcggt 354
||||| ||||| || | || |||||||||||||||||||||||||| ||||||||||||
Sbjct: 29334061 ctggcctgcgtcgccggcgcctccgtcatcacgctctacaagggccctaccatcttcggt 29334120
Query: 355 ccc 357
|||
Sbjct: 29334121 ccc 29334123
Score = 176 bits (89), Expect = 8e-042
Identities = 127/140 (90%)
Strand = Plus / Plus
Query: 412 aagaactggacgctgggntgcgtgtacctgatcgggcactgcctgtcgtggtccggctgg 471
||||||||||||||||| ||||||||| ||||||||||||||||||||||||| || |||
Sbjct: 29334184 aagaactggacgctgggctgcgtgtacttgatcgggcactgcctgtcgtggtcgggatgg 29334243
Query: 472 ctggtgctgcaggctcccgtgctgaagaagtacccggcacggctggccgtcacctcctac 531
|||||||||||||| || |||||||||||||||||||| ||||| | || || || |||
Sbjct: 29334244 ctggtgctgcaggcgccggtgctgaagaagtacccggcgaggctgtcggtgacgtcatac 29334303
Query: 532 acctgcttcttcggcgtcat 551
||||||||||||||||||||
Sbjct: 29334304 acctgcttcttcggcgtcat 29334323
Score = 52.0 bits (26), Expect = 3e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 357 cggcggcggcggcggcctcgagctggcgtc 386
|||||||||||||||||||||| |||||||
Sbjct: 27968407 cggcggcggcggcggcctcgagatggcgtc 27968436
Score = 42.1 bits (21), Expect = 0.31
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 357 cggcggcggcggcggcctcga 377
|||||||||||||||||||||
Sbjct: 5237788 cggcggcggcggcggcctcga 5237808
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 246 bits (124), Expect = 1e-062
Identities = 258/303 (85%)
Strand = Plus / Plus
Query: 55 tgcaggaaagacaggccgcagctgaccctcaacttcgtcgtccagtttttctttctcgcg 114
|||||||| || ||||||||||||| || | |||||| || ||||| ||| | || |||
Sbjct: 28111974 tgcaggaaggatcggccgcagctgacgctgagcttcgtggtgcagttcttcctgctggcg 28112033
Query: 115 ctctgcggcatcacggcgaaccaagggttttacctcctgggcctggacaacacgtcgccg 174
|| ||||||||||| || ||||| || || |||||||| || || |||||||| || |||
Sbjct: 28112034 ctgtgcggcatcaccgccaaccagggcttctacctcctcggactcgacaacacctccccg 28112093
Query: 175 acgttcgcgtccgccatccagaactcggtcccggccatcaccttcgccatggccgcggcg 234
|| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 28112094 accttcgcctccgccatccagaactccgtcccggccatcaccttcgccatggccgccgcg 28112153
Query: 235 ctgcggatcgagaaggtccggctggaccgccgcgacggcgtagccaaggtggcgggcacg 294
|| || |||||| ||||| || ||||||||||||||||| ||||||||| ||||||
Sbjct: 28112154 ctccgcatcgagcgcgtccgcctcgaccgccgcgacggcgtcgccaaggtgctcggcacg 28112213
Query: 295 ctggcgtgcgtggcggnggcatccgtcatcacgctctacaagggccccaccatcttcggt 354
||||| ||||| || | || |||||||||||||||||||||||||| ||||||||||||
Sbjct: 28112214 ctggcctgcgtcgccggcgcctccgtcatcacgctctacaagggccctaccatcttcggt 28112273
Query: 355 ccc 357
|||
Sbjct: 28112274 ccc 28112276
Score = 176 bits (89), Expect = 8e-042
Identities = 127/140 (90%)
Strand = Plus / Plus
Query: 412 aagaactggacgctgggntgcgtgtacctgatcgggcactgcctgtcgtggtccggctgg 471
||||||||||||||||| ||||||||| ||||||||||||||||||||||||| || |||
Sbjct: 28112337 aagaactggacgctgggctgcgtgtacttgatcgggcactgcctgtcgtggtcgggatgg 28112396
Query: 472 ctggtgctgcaggctcccgtgctgaagaagtacccggcacggctggccgtcacctcctac 531
|||||||||||||| || |||||||||||||||||||| ||||| | || || || |||
Sbjct: 28112397 ctggtgctgcaggcgccggtgctgaagaagtacccggcgaggctgtcggtgacgtcatac 28112456
Query: 532 acctgcttcttcggcgtcat 551
||||||||||||||||||||
Sbjct: 28112457 acctgcttcttcggcgtcat 28112476
Score = 46.1 bits (23), Expect = 0.020
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 357 cggcggcggcggcggcctcgagc 379
|||||||||||||||||||||||
Sbjct: 20452884 cggcggcggcggcggcctcgagc 20452906
Score = 42.1 bits (21), Expect = 0.31
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 355 cccggcggcggcggcggcctc 375
|||||||||||||||||||||
Sbjct: 23401459 cccggcggcggcggcggcctc 23401479
>dbj|AK071683.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023109M16, full
insert sequence
Length = 1601
Score = 244 bits (123), Expect = 4e-062
Identities = 248/290 (85%)
Strand = Plus / Plus
Query: 68 ggccgcagctgaccctcaacttcgtcgtccagtttttctttctcgcgctctgcggcatca 127
||||||||||||| || | |||||| || ||||| ||| | || ||||| ||||||||||
Sbjct: 354 ggccgcagctgacgctgagcttcgtggtgcagttcttcctgctggcgctgtgcggcatca 413
Query: 128 cggcgaaccaagggttttacctcctgggcctggacaacacgtcgccgacgttcgcgtccg 187
| || ||||| || || |||||||| || || |||||||| || ||||| ||||| ||||
Sbjct: 414 ccgccaaccagggcttctacctcctcggactcgacaacacctccccgaccttcgcctccg 473
Query: 188 ccatccagaactcggtcccggccatcaccttcgccatggccgcggcgctgcggatcgaga 247
||||||||||||| ||||||||||||||||||||||||||||| ||||| || ||||||
Sbjct: 474 ccatccagaactccgtcccggccatcaccttcgccatggccgccgcgctccgcatcgagc 533
Query: 248 aggtccggctggaccgccgcgacggcgtagccaaggtggcgggcacgctggcgtgcgtgg 307
||||| || ||||||||||||||||| ||||||||| ||||||||||| ||||| |
Sbjct: 534 gcgtccgcctcgaccgccgcgacggcgtcgccaaggtgctcggcacgctggcctgcgtcg 593
Query: 308 cggnggcatccgtcatcacgctctacaagggccccaccatcttcggtccc 357
| | || |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 594 ccggcgcctccgtcatcacgctctacaagggccctaccatcttcggtccc 643
Score = 168 bits (85), Expect = 2e-039
Identities = 126/140 (90%)
Strand = Plus / Plus
Query: 412 aagaactggacgctgggntgcgtgtacctgatcgggcactgcctgtcgtggtccggctgg 471
||||||||||||||||| ||||||||| ||||||||||||||||||||||||| || |||
Sbjct: 704 aagaactggacgctgggctgcgtgtacttgatcgggcactgcctgtcgtggtcgggatgg 763
Query: 472 ctggtgctgcaggctcccgtgctgaagaagtacccggcacggctggccgtcacctcctac 531
|||||||||||||| || ||||||||| |||||||||| ||||| | || || || |||
Sbjct: 764 ctggtgctgcaggcgccggtgctgaaggagtacccggcgaggctgtcggtgacgtcatac 823
Query: 532 acctgcttcttcggcgtcat 551
||||||||||||||||||||
Sbjct: 824 acctgcttcttcggcgtcat 843
>dbj|AK099177.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023096J12, full
insert sequence
Length = 1595
Score = 244 bits (123), Expect = 4e-062
Identities = 248/290 (85%)
Strand = Plus / Plus
Query: 68 ggccgcagctgaccctcaacttcgtcgtccagtttttctttctcgcgctctgcggcatca 127
||||||||||||| || | |||||| || ||||| ||| | || ||||| ||||||||||
Sbjct: 348 ggccgcagctgacgctgagcttcgtggtgcagttcttcctgctggcgctgtgcggcatca 407
Query: 128 cggcgaaccaagggttttacctcctgggcctggacaacacgtcgccgacgttcgcgtccg 187
| || ||||| || || |||||||| || || |||||||| || ||||| ||||| ||||
Sbjct: 408 ccgccaaccagggcttctacctcctcggactcgacaacacctccccgaccttcgcctccg 467
Query: 188 ccatccagaactcggtcccggccatcaccttcgccatggccgcggcgctgcggatcgaga 247
||||||||||||| ||||||||||||||||||||||||||||| ||||| || ||||||
Sbjct: 468 ccatccagaactccgtcccggccatcaccttcgccatggccgccgcgctccgcatcgagc 527
Query: 248 aggtccggctggaccgccgcgacggcgtagccaaggtggcgggcacgctggcgtgcgtgg 307
||||| || ||||||||||||||||| ||||||||| ||||||||||| ||||| |
Sbjct: 528 gcgtccgcctcgaccgccgcgacggcgtcgccaaggtgctcggcacgctggcctgcgtcg 587
Query: 308 cggnggcatccgtcatcacgctctacaagggccccaccatcttcggtccc 357
| | || |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 588 ccggcgcctccgtcatcacgctctacaagggccctaccatcttcggtccc 637
Score = 176 bits (89), Expect = 8e-042
Identities = 127/140 (90%)
Strand = Plus / Plus
Query: 412 aagaactggacgctgggntgcgtgtacctgatcgggcactgcctgtcgtggtccggctgg 471
||||||||||||||||| ||||||||| ||||||||||||||||||||||||| || |||
Sbjct: 698 aagaactggacgctgggctgcgtgtacttgatcgggcactgcctgtcgtggtcgggatgg 757
Query: 472 ctggtgctgcaggctcccgtgctgaagaagtacccggcacggctggccgtcacctcctac 531
|||||||||||||| || |||||||||||||||||||| ||||| | || || || |||
Sbjct: 758 ctggtgctgcaggcgccggtgctgaagaagtacccggcgaggctgtcggtgacgtcatac 817
Query: 532 acctgcttcttcggcgtcat 551
||||||||||||||||||||
Sbjct: 818 acctgcttcttcggcgtcat 837
>ref|XM_483787.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1595
Score = 244 bits (123), Expect = 4e-062
Identities = 248/290 (85%)
Strand = Plus / Plus
Query: 68 ggccgcagctgaccctcaacttcgtcgtccagtttttctttctcgcgctctgcggcatca 127
||||||||||||| || | |||||| || ||||| ||| | || ||||| ||||||||||
Sbjct: 348 ggccgcagctgacgctgagcttcgtggtgcagttcttcctgctggcgctgtgcggcatca 407
Query: 128 cggcgaaccaagggttttacctcctgggcctggacaacacgtcgccgacgttcgcgtccg 187
| || ||||| || || |||||||| || || |||||||| || ||||| ||||| ||||
Sbjct: 408 ccgccaaccagggcttctacctcctcggactcgacaacacctccccgaccttcgcctccg 467
Query: 188 ccatccagaactcggtcccggccatcaccttcgccatggccgcggcgctgcggatcgaga 247
||||||||||||| ||||||||||||||||||||||||||||| ||||| || ||||||
Sbjct: 468 ccatccagaactccgtcccggccatcaccttcgccatggccgccgcgctccgcatcgagc 527
Query: 248 aggtccggctggaccgccgcgacggcgtagccaaggtggcgggcacgctggcgtgcgtgg 307
||||| || ||||||||||||||||| ||||||||| ||||||||||| ||||| |
Sbjct: 528 gcgtccgcctcgaccgccgcgacggcgtcgccaaggtgctcggcacgctggcctgcgtcg 587
Query: 308 cggnggcatccgtcatcacgctctacaagggccccaccatcttcggtccc 357
| | || |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 588 ccggcgcctccgtcatcacgctctacaagggccctaccatcttcggtccc 637
Score = 176 bits (89), Expect = 8e-042
Identities = 127/140 (90%)
Strand = Plus / Plus
Query: 412 aagaactggacgctgggntgcgtgtacctgatcgggcactgcctgtcgtggtccggctgg 471
||||||||||||||||| ||||||||| ||||||||||||||||||||||||| || |||
Sbjct: 698 aagaactggacgctgggctgcgtgtacttgatcgggcactgcctgtcgtggtcgggatgg 757
Query: 472 ctggtgctgcaggctcccgtgctgaagaagtacccggcacggctggccgtcacctcctac 531
|||||||||||||| || |||||||||||||||||||| ||||| | || || || |||
Sbjct: 758 ctggtgctgcaggcgccggtgctgaagaagtacccggcgaggctgtcggtgacgtcatac 817
Query: 532 acctgcttcttcggcgtcat 551
||||||||||||||||||||
Sbjct: 818 acctgcttcttcggcgtcat 837
>ref|XM_507340.1| PREDICTED Oryza sativa (japonica cultivar-group), P0604E01.39 mRNA
Length = 1601
Score = 244 bits (123), Expect = 4e-062
Identities = 248/290 (85%)
Strand = Plus / Plus
Query: 68 ggccgcagctgaccctcaacttcgtcgtccagtttttctttctcgcgctctgcggcatca 127
||||||||||||| || | |||||| || ||||| ||| | || ||||| ||||||||||
Sbjct: 354 ggccgcagctgacgctgagcttcgtggtgcagttcttcctgctggcgctgtgcggcatca 413
Query: 128 cggcgaaccaagggttttacctcctgggcctggacaacacgtcgccgacgttcgcgtccg 187
| || ||||| || || |||||||| || || |||||||| || ||||| ||||| ||||
Sbjct: 414 ccgccaaccagggcttctacctcctcggactcgacaacacctccccgaccttcgcctccg 473
Query: 188 ccatccagaactcggtcccggccatcaccttcgccatggccgcggcgctgcggatcgaga 247
||||||||||||| ||||||||||||||||||||||||||||| ||||| || ||||||
Sbjct: 474 ccatccagaactccgtcccggccatcaccttcgccatggccgccgcgctccgcatcgagc 533
Query: 248 aggtccggctggaccgccgcgacggcgtagccaaggtggcgggcacgctggcgtgcgtgg 307
||||| || ||||||||||||||||| ||||||||| ||||||||||| ||||| |
Sbjct: 534 gcgtccgcctcgaccgccgcgacggcgtcgccaaggtgctcggcacgctggcctgcgtcg 593
Query: 308 cggnggcatccgtcatcacgctctacaagggccccaccatcttcggtccc 357
| | || |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 594 ccggcgcctccgtcatcacgctctacaagggccctaccatcttcggtccc 643
Score = 176 bits (89), Expect = 8e-042
Identities = 127/140 (90%)
Strand = Plus / Plus
Query: 412 aagaactggacgctgggntgcgtgtacctgatcgggcactgcctgtcgtggtccggctgg 471
||||||||||||||||| ||||||||| ||||||||||||||||||||||||| || |||
Sbjct: 704 aagaactggacgctgggctgcgtgtacttgatcgggcactgcctgtcgtggtcgggatgg 763
Query: 472 ctggtgctgcaggctcccgtgctgaagaagtacccggcacggctggccgtcacctcctac 531
|||||||||||||| || |||||||||||||||||||| ||||| | || || || |||
Sbjct: 764 ctggtgctgcaggcgccggtgctgaagaagtacccggcgaggctgtcggtgacgtcatac 823
Query: 532 acctgcttcttcggcgtcat 551
||||||||||||||||||||
Sbjct: 824 acctgcttcttcggcgtcat 843
>dbj|AK106679.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-114-B01, full
insert sequence
Length = 2106
Score = 167 bits (84), Expect = 8e-039
Identities = 212/255 (83%)
Strand = Plus / Minus
Query: 97 cagtttttctttctcgcgctctgcggcatcacggcgaaccaagggttttacctcctgggc 156
||||| ||||| || ||||| ||||| ||||| || ||||| || || ||||| |||||
Sbjct: 746 cagttcttcttcctggcgctgtgcgggatcaccgccaaccagggcttctacctgctgggg 687
Query: 157 ctggacaacacgtcgccgacgttcgcgtccgccatccagaactcggtcccggccatcacc 216
|| || ||||| |||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 686 ctcgagaacacctcgccgacgttcgcctccgccatccagaactccgtcccggccatcacc 627
Query: 217 ttcgccatggccgcggcgctgcggatcgagaaggtccggctggaccgccgcgacggcgta 276
|||||||||||||| ||||| || |||||| ||||| || | |||||||||| |
Sbjct: 626 ttcgccatggccgccgcgctccgcatcgagcgcgtccgcctctcctcccgcgacggcctc 567
Query: 277 gccaaggtggcgggcacgctggcgtgcgtggcggnggcatccgtcatcacgctctacaag 336
|||||||| || ||||||||| ||||| || | || |||||||||||||||| ||||
Sbjct: 566 gccaaggtcgccggcacgctgctctgcgtcgccggcgcctccgtcatcacgctcttcaag 507
Query: 337 ggccccaccatcttc 351
|||||| ||||||||
Sbjct: 506 ggccccgccatcttc 492
Score = 123 bits (62), Expect = 1e-025
Identities = 127/149 (85%)
Strand = Plus / Minus
Query: 403 gccggcgacaagaactggacgctgggntgcgtgtacctgatcgggcactgcctgtcgtgg 462
|||||| |||||| |||||||||||| ||||||| |||| | ||||||||| ||||||||
Sbjct: 437 gccggcaacaagagctggacgctggggtgcgtgttcctgctggggcactgcgtgtcgtgg 378
Query: 463 tccggctggctggtgctgcaggctcccgtgctgaagaagtacccggcacggctggccgtc 522
|| || ||||||||||||||||| || ||||||||| |||||||| ||||| | ||
Sbjct: 377 tcggggtggctggtgctgcaggcgccggtgctgaagcgctacccggcgaggctgtcggtg 318
Query: 523 acctcctacacctgcttcttcggcgtcat 551
|| || |||||||||||||||||| ||||
Sbjct: 317 acgtcatacacctgcttcttcggcctcat 289
>dbj|AP004090.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1399_H05
Length = 147670
Score = 167 bits (84), Expect = 8e-039
Identities = 212/255 (83%)
Strand = Plus / Minus
Query: 97 cagtttttctttctcgcgctctgcggcatcacggcgaaccaagggttttacctcctgggc 156
||||| ||||| || ||||| ||||| ||||| || ||||| || || ||||| |||||
Sbjct: 121575 cagttcttcttcctggcgctgtgcgggatcaccgccaaccagggcttctacctgctgggg 121516
Query: 157 ctggacaacacgtcgccgacgttcgcgtccgccatccagaactcggtcccggccatcacc 216
|| || ||||| |||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 121515 ctcgagaacacctcgccgacgttcgcctccgccatccagaactccgtcccggccatcacc 121456
Query: 217 ttcgccatggccgcggcgctgcggatcgagaaggtccggctggaccgccgcgacggcgta 276
|||||||||||||| ||||| || |||||| ||||| || | |||||||||| |
Sbjct: 121455 ttcgccatggccgccgcgctccgcatcgagcgcgtccgcctctcctcccgcgacggcctc 121396
Query: 277 gccaaggtggcgggcacgctggcgtgcgtggcggnggcatccgtcatcacgctctacaag 336
|||||||| || ||||||||| ||||| || | || |||||||||||||||| ||||
Sbjct: 121395 gccaaggtcgccggcacgctgctctgcgtcgccggcgcctccgtcatcacgctcttcaag 121336
Query: 337 ggccccaccatcttc 351
|||||| ||||||||
Sbjct: 121335 ggccccgccatcttc 121321
Score = 123 bits (62), Expect = 1e-025
Identities = 127/149 (85%)
Strand = Plus / Minus
Query: 403 gccggcgacaagaactggacgctgggntgcgtgtacctgatcgggcactgcctgtcgtgg 462
|||||| |||||| |||||||||||| ||||||| |||| | ||||||||| ||||||||
Sbjct: 121266 gccggcaacaagagctggacgctggggtgcgtgttcctgctggggcactgcgtgtcgtgg 121207
Query: 463 tccggctggctggtgctgcaggctcccgtgctgaagaagtacccggcacggctggccgtc 522
|| || ||||||||||||||||| || ||||||||| |||||||| ||||| | ||
Sbjct: 121206 tcggggtggctggtgctgcaggcgccggtgctgaagcgctacccggcgaggctgtcggtg 121147
Query: 523 acctcctacacctgcttcttcggcgtcat 551
|| || |||||||||||||||||| ||||
Sbjct: 121146 acgtcatacacctgcttcttcggcctcat 121118
>gb|AACV01003203.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg003203, whole
genome shotgun sequence
Length = 22406
Score = 167 bits (84), Expect = 8e-039
Identities = 212/255 (83%)
Strand = Plus / Minus
Query: 97 cagtttttctttctcgcgctctgcggcatcacggcgaaccaagggttttacctcctgggc 156
||||| ||||| || ||||| ||||| ||||| || ||||| || || ||||| |||||
Sbjct: 1186 cagttcttcttcctggcgctgtgcgggatcaccgccaaccagggcttctacctgctgggg 1127
Query: 157 ctggacaacacgtcgccgacgttcgcgtccgccatccagaactcggtcccggccatcacc 216
|| || ||||| |||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 1126 ctcgagaacacctcgccgacgttcgcctccgccatccagaactccgtcccggccatcacc 1067
Query: 217 ttcgccatggccgcggcgctgcggatcgagaaggtccggctggaccgccgcgacggcgta 276
|||||||||||||| ||||| || |||||| ||||| || | |||||||||| |
Sbjct: 1066 ttcgccatggccgccgcgctccgcatcgagcgcgtccgcctctcctcccgcgacggcctc 1007
Query: 277 gccaaggtggcgggcacgctggcgtgcgtggcggnggcatccgtcatcacgctctacaag 336
|||||||| || ||||||||| ||||| || | || |||||||||||||||| ||||
Sbjct: 1006 gccaaggtcgccggcacgctgctctgcgtcgccggcgcctccgtcatcacgctcttcaag 947
Query: 337 ggccccaccatcttc 351
|||||| ||||||||
Sbjct: 946 ggccccgccatcttc 932
Score = 123 bits (62), Expect = 1e-025
Identities = 127/149 (85%)
Strand = Plus / Minus
Query: 403 gccggcgacaagaactggacgctgggntgcgtgtacctgatcgggcactgcctgtcgtgg 462
|||||| |||||| |||||||||||| ||||||| |||| | ||||||||| ||||||||
Sbjct: 877 gccggcaacaagagctggacgctggggtgcgtgttcctgctggggcactgcgtgtcgtgg 818
Query: 463 tccggctggctggtgctgcaggctcccgtgctgaagaagtacccggcacggctggccgtc 522
|| || ||||||||||||||||| || ||||||||| |||||||| ||||| | ||
Sbjct: 817 tcggggtggctggtgctgcaggcgccggtgctgaagcgctacccggcgaggctgtcggtg 758
Query: 523 acctcctacacctgcttcttcggcgtcat 551
|| || |||||||||||||||||| ||||
Sbjct: 757 acgtcatacacctgcttcttcggcctcat 729
>ref|XM_463858.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1161
Score = 167 bits (84), Expect = 8e-039
Identities = 212/255 (83%)
Strand = Plus / Plus
Query: 97 cagtttttctttctcgcgctctgcggcatcacggcgaaccaagggttttacctcctgggc 156
||||| ||||| || ||||| ||||| ||||| || ||||| || || ||||| |||||
Sbjct: 253 cagttcttcttcctggcgctgtgcgggatcaccgccaaccagggcttctacctgctgggg 312
Query: 157 ctggacaacacgtcgccgacgttcgcgtccgccatccagaactcggtcccggccatcacc 216
|| || ||||| |||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 313 ctcgagaacacctcgccgacgttcgcctccgccatccagaactccgtcccggccatcacc 372
Query: 217 ttcgccatggccgcggcgctgcggatcgagaaggtccggctggaccgccgcgacggcgta 276
|||||||||||||| ||||| || |||||| ||||| || | |||||||||| |
Sbjct: 373 ttcgccatggccgccgcgctccgcatcgagcgcgtccgcctctcctcccgcgacggcctc 432
Query: 277 gccaaggtggcgggcacgctggcgtgcgtggcggnggcatccgtcatcacgctctacaag 336
|||||||| || ||||||||| ||||| || | || |||||||||||||||| ||||
Sbjct: 433 gccaaggtcgccggcacgctgctctgcgtcgccggcgcctccgtcatcacgctcttcaag 492
Query: 337 ggccccaccatcttc 351
|||||| ||||||||
Sbjct: 493 ggccccgccatcttc 507
Score = 123 bits (62), Expect = 1e-025
Identities = 127/149 (85%)
Strand = Plus / Plus
Query: 403 gccggcgacaagaactggacgctgggntgcgtgtacctgatcgggcactgcctgtcgtgg 462
|||||| |||||| |||||||||||| ||||||| |||| | ||||||||| ||||||||
Sbjct: 562 gccggcaacaagagctggacgctggggtgcgtgttcctgctggggcactgcgtgtcgtgg 621
Query: 463 tccggctggctggtgctgcaggctcccgtgctgaagaagtacccggcacggctggccgtc 522
|| || ||||||||||||||||| || ||||||||| |||||||| ||||| | ||
Sbjct: 622 tcggggtggctggtgctgcaggcgccggtgctgaagcgctacccggcgaggctgtcggtg 681
Query: 523 acctcctacacctgcttcttcggcgtcat 551
|| || |||||||||||||||||| ||||
Sbjct: 682 acgtcatacacctgcttcttcggcctcat 710
>dbj|AP004867.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0036E06
Length = 137926
Score = 167 bits (84), Expect = 8e-039
Identities = 212/255 (83%)
Strand = Plus / Minus
Query: 97 cagtttttctttctcgcgctctgcggcatcacggcgaaccaagggttttacctcctgggc 156
||||| ||||| || ||||| ||||| ||||| || ||||| || || ||||| |||||
Sbjct: 42811 cagttcttcttcctggcgctgtgcgggatcaccgccaaccagggcttctacctgctgggg 42752
Query: 157 ctggacaacacgtcgccgacgttcgcgtccgccatccagaactcggtcccggccatcacc 216
|| || ||||| |||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 42751 ctcgagaacacctcgccgacgttcgcctccgccatccagaactccgtcccggccatcacc 42692
Query: 217 ttcgccatggccgcggcgctgcggatcgagaaggtccggctggaccgccgcgacggcgta 276
|||||||||||||| ||||| || |||||| ||||| || | |||||||||| |
Sbjct: 42691 ttcgccatggccgccgcgctccgcatcgagcgcgtccgcctctcctcccgcgacggcctc 42632
Query: 277 gccaaggtggcgggcacgctggcgtgcgtggcggnggcatccgtcatcacgctctacaag 336
|||||||| || ||||||||| ||||| || | || |||||||||||||||| ||||
Sbjct: 42631 gccaaggtcgccggcacgctgctctgcgtcgccggcgcctccgtcatcacgctcttcaag 42572
Query: 337 ggccccaccatcttc 351
|||||| ||||||||
Sbjct: 42571 ggccccgccatcttc 42557
Score = 123 bits (62), Expect = 1e-025
Identities = 127/149 (85%)
Strand = Plus / Minus
Query: 403 gccggcgacaagaactggacgctgggntgcgtgtacctgatcgggcactgcctgtcgtgg 462
|||||| |||||| |||||||||||| ||||||| |||| | ||||||||| ||||||||
Sbjct: 42502 gccggcaacaagagctggacgctggggtgcgtgttcctgctggggcactgcgtgtcgtgg 42443
Query: 463 tccggctggctggtgctgcaggctcccgtgctgaagaagtacccggcacggctggccgtc 522
|| || ||||||||||||||||| || ||||||||| |||||||| ||||| | ||
Sbjct: 42442 tcggggtggctggtgctgcaggcgccggtgctgaagcgctacccggcgaggctgtcggtg 42383
Query: 523 acctcctacacctgcttcttcggcgtcat 551
|| || |||||||||||||||||| ||||
Sbjct: 42382 acgtcatacacctgcttcttcggcctcat 42354
>ref|NT_107175.1| Oryza sativa (japonica cultivar-group)
Length = 2882457
Score = 167 bits (84), Expect = 8e-039
Identities = 212/255 (83%)
Strand = Plus / Minus
Query: 97 cagtttttctttctcgcgctctgcggcatcacggcgaaccaagggttttacctcctgggc 156
||||| ||||| || ||||| ||||| ||||| || ||||| || || ||||| |||||
Sbjct: 764680 cagttcttcttcctggcgctgtgcgggatcaccgccaaccagggcttctacctgctgggg 764621
Query: 157 ctggacaacacgtcgccgacgttcgcgtccgccatccagaactcggtcccggccatcacc 216
|| || ||||| |||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 764620 ctcgagaacacctcgccgacgttcgcctccgccatccagaactccgtcccggccatcacc 764561
Query: 217 ttcgccatggccgcggcgctgcggatcgagaaggtccggctggaccgccgcgacggcgta 276
|||||||||||||| ||||| || |||||| ||||| || | |||||||||| |
Sbjct: 764560 ttcgccatggccgccgcgctccgcatcgagcgcgtccgcctctcctcccgcgacggcctc 764501
Query: 277 gccaaggtggcgggcacgctggcgtgcgtggcggnggcatccgtcatcacgctctacaag 336
|||||||| || ||||||||| ||||| || | || |||||||||||||||| ||||
Sbjct: 764500 gccaaggtcgccggcacgctgctctgcgtcgccggcgcctccgtcatcacgctcttcaag 764441
Query: 337 ggccccaccatcttc 351
|||||| ||||||||
Sbjct: 764440 ggccccgccatcttc 764426
Score = 123 bits (62), Expect = 1e-025
Identities = 127/149 (85%)
Strand = Plus / Minus
Query: 403 gccggcgacaagaactggacgctgggntgcgtgtacctgatcgggcactgcctgtcgtgg 462
|||||| |||||| |||||||||||| ||||||| |||| | ||||||||| ||||||||
Sbjct: 764371 gccggcaacaagagctggacgctggggtgcgtgttcctgctggggcactgcgtgtcgtgg 764312
Query: 463 tccggctggctggtgctgcaggctcccgtgctgaagaagtacccggcacggctggccgtc 522
|| || ||||||||||||||||| || ||||||||| |||||||| ||||| | ||
Sbjct: 764311 tcggggtggctggtgctgcaggcgccggtgctgaagcgctacccggcgaggctgtcggtg 764252
Query: 523 acctcctacacctgcttcttcggcgtcat 551
|| || |||||||||||||||||| ||||
Sbjct: 764251 acgtcatacacctgcttcttcggcctcat 764223
>gb|CH401169.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000006
genomic scaffold, whole genome shotgun sequence
Length = 13452964
Score = 167 bits (84), Expect = 8e-039
Identities = 212/255 (83%)
Strand = Plus / Minus
Query: 97 cagtttttctttctcgcgctctgcggcatcacggcgaaccaagggttttacctcctgggc 156
||||| ||||| || ||||| ||||| ||||| || ||||| || || ||||| |||||
Sbjct: 777350 cagttcttcttcctggcgctgtgcgggatcaccgccaaccagggcttctacctgctgggg 777291
Query: 157 ctggacaacacgtcgccgacgttcgcgtccgccatccagaactcggtcccggccatcacc 216
|| || ||||| |||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 777290 ctcgagaacacctcgccgacgttcgcctccgccatccagaactccgtcccggccatcacc 777231
Query: 217 ttcgccatggccgcggcgctgcggatcgagaaggtccggctggaccgccgcgacggcgta 276
|||||||||||||| ||||| || |||||| ||||| || | |||||||||| |
Sbjct: 777230 ttcgccatggccgccgcgctccgcatcgagcgcgtccgcctctcctcccgcgacggcctc 777171
Query: 277 gccaaggtggcgggcacgctggcgtgcgtggcggnggcatccgtcatcacgctctacaag 336
|||||||| || ||||||||| ||||| || | || |||||||||||||||| ||||
Sbjct: 777170 gccaaggtcgccggcacgctgctctgcgtcgccggcgcctccgtcatcacgctcttcaag 777111
Query: 337 ggccccaccatcttc 351
|||||| ||||||||
Sbjct: 777110 ggccccgccatcttc 777096
Score = 123 bits (62), Expect = 1e-025
Identities = 127/149 (85%)
Strand = Plus / Minus
Query: 403 gccggcgacaagaactggacgctgggntgcgtgtacctgatcgggcactgcctgtcgtgg 462
|||||| |||||| |||||||||||| ||||||| |||| | ||||||||| ||||||||
Sbjct: 777041 gccggcaacaagagctggacgctggggtgcgtgttcctgctggggcactgcgtgtcgtgg 776982
Query: 463 tccggctggctggtgctgcaggctcccgtgctgaagaagtacccggcacggctggccgtc 522
|| || ||||||||||||||||| || ||||||||| |||||||| ||||| | ||
Sbjct: 776981 tcggggtggctggtgctgcaggcgccggtgctgaagcgctacccggcgaggctgtcggtg 776922
Query: 523 acctcctacacctgcttcttcggcgtcat 551
|| || |||||||||||||||||| ||||
Sbjct: 776921 acgtcatacacctgcttcttcggcctcat 776893
Score = 42.1 bits (21), Expect = 0.31
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 352 ggtcccggcggcggcggcggc 372
|||||||||||||||||||||
Sbjct: 8740440 ggtcccggcggcggcggcggc 8740420
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 167 bits (84), Expect = 8e-039
Identities = 212/255 (83%)
Strand = Plus / Minus
Query: 97 cagtttttctttctcgcgctctgcggcatcacggcgaaccaagggttttacctcctgggc 156
||||| ||||| || ||||| ||||| ||||| || ||||| || || ||||| |||||
Sbjct: 777350 cagttcttcttcctggcgctgtgcgggatcaccgccaaccagggcttctacctgctgggg 777291
Query: 157 ctggacaacacgtcgccgacgttcgcgtccgccatccagaactcggtcccggccatcacc 216
|| || ||||| |||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 777290 ctcgagaacacctcgccgacgttcgcctccgccatccagaactccgtcccggccatcacc 777231
Query: 217 ttcgccatggccgcggcgctgcggatcgagaaggtccggctggaccgccgcgacggcgta 276
|||||||||||||| ||||| || |||||| ||||| || | |||||||||| |
Sbjct: 777230 ttcgccatggccgccgcgctccgcatcgagcgcgtccgcctctcctcccgcgacggcctc 777171
Query: 277 gccaaggtggcgggcacgctggcgtgcgtggcggnggcatccgtcatcacgctctacaag 336
|||||||| || ||||||||| ||||| || | || |||||||||||||||| ||||
Sbjct: 777170 gccaaggtcgccggcacgctgctctgcgtcgccggcgcctccgtcatcacgctcttcaag 777111
Query: 337 ggccccaccatcttc 351
|||||| ||||||||
Sbjct: 777110 ggccccgccatcttc 777096
Score = 123 bits (62), Expect = 1e-025
Identities = 127/149 (85%)
Strand = Plus / Minus
Query: 403 gccggcgacaagaactggacgctgggntgcgtgtacctgatcgggcactgcctgtcgtgg 462
|||||| |||||| |||||||||||| ||||||| |||| | ||||||||| ||||||||
Sbjct: 777041 gccggcaacaagagctggacgctggggtgcgtgttcctgctggggcactgcgtgtcgtgg 776982
Query: 463 tccggctggctggtgctgcaggctcccgtgctgaagaagtacccggcacggctggccgtc 522
|| || ||||||||||||||||| || ||||||||| |||||||| ||||| | ||
Sbjct: 776981 tcggggtggctggtgctgcaggcgccggtgctgaagcgctacccggcgaggctgtcggtg 776922
Query: 523 acctcctacacctgcttcttcggcgtcat 551
|| || |||||||||||||||||| ||||
Sbjct: 776921 acgtcatacacctgcttcttcggcctcat 776893
Score = 42.1 bits (21), Expect = 0.31
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 348 cttcggtcccggcggcggcggcggc 372
|||| ||||||||||||||||||||
Sbjct: 24329295 cttccgtcccggcggcggcggcggc 24329319
Score = 42.1 bits (21), Expect = 0.31
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 352 ggtcccggcggcggcggcggc 372
|||||||||||||||||||||
Sbjct: 8740440 ggtcccggcggcggcggcggc 8740420
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
complete sequence
Length = 35954743
Score = 167 bits (84), Expect = 8e-039
Identities = 212/255 (83%)
Strand = Plus / Minus
Query: 97 cagtttttctttctcgcgctctgcggcatcacggcgaaccaagggttttacctcctgggc 156
||||| ||||| || ||||| ||||| ||||| || ||||| || || ||||| |||||
Sbjct: 764680 cagttcttcttcctggcgctgtgcgggatcaccgccaaccagggcttctacctgctgggg 764621
Query: 157 ctggacaacacgtcgccgacgttcgcgtccgccatccagaactcggtcccggccatcacc 216
|| || ||||| |||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 764620 ctcgagaacacctcgccgacgttcgcctccgccatccagaactccgtcccggccatcacc 764561
Query: 217 ttcgccatggccgcggcgctgcggatcgagaaggtccggctggaccgccgcgacggcgta 276
|||||||||||||| ||||| || |||||| ||||| || | |||||||||| |
Sbjct: 764560 ttcgccatggccgccgcgctccgcatcgagcgcgtccgcctctcctcccgcgacggcctc 764501
Query: 277 gccaaggtggcgggcacgctggcgtgcgtggcggnggcatccgtcatcacgctctacaag 336
|||||||| || ||||||||| ||||| || | || |||||||||||||||| ||||
Sbjct: 764500 gccaaggtcgccggcacgctgctctgcgtcgccggcgcctccgtcatcacgctcttcaag 764441
Query: 337 ggccccaccatcttc 351
|||||| ||||||||
Sbjct: 764440 ggccccgccatcttc 764426
Score = 123 bits (62), Expect = 1e-025
Identities = 127/149 (85%)
Strand = Plus / Minus
Query: 403 gccggcgacaagaactggacgctgggntgcgtgtacctgatcgggcactgcctgtcgtgg 462
|||||| |||||| |||||||||||| ||||||| |||| | ||||||||| ||||||||
Sbjct: 764371 gccggcaacaagagctggacgctggggtgcgtgttcctgctggggcactgcgtgtcgtgg 764312
Query: 463 tccggctggctggtgctgcaggctcccgtgctgaagaagtacccggcacggctggccgtc 522
|| || ||||||||||||||||| || ||||||||| |||||||| ||||| | ||
Sbjct: 764311 tcggggtggctggtgctgcaggcgccggtgctgaagcgctacccggcgaggctgtcggtg 764252
Query: 523 acctcctacacctgcttcttcggcgtcat 551
|| || |||||||||||||||||| ||||
Sbjct: 764251 acgtcatacacctgcttcttcggcctcat 764223
Score = 42.1 bits (21), Expect = 0.31
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 348 cttcggtcccggcggcggcggcggc 372
|||| ||||||||||||||||||||
Sbjct: 24559241 cttccgtcccggcggcggcggcggc 24559265
Score = 42.1 bits (21), Expect = 0.31
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 352 ggtcccggcggcggcggcggc 372
|||||||||||||||||||||
Sbjct: 8584068 ggtcccggcggcggcggcggc 8584048
Score = 42.1 bits (21), Expect = 0.31
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 352 ggtcccggcggcggcggcggc 372
|||||||||||||||||||||
Sbjct: 4831331 ggtcccggcggcggcggcggc 4831351
>gb|AU098334.1|AU098334 AU098334 Rice cDNA from immature leaf including apical meristem
(under short day condition) Oryza sativa (japonica
cultivar-group) cDNA clone E60334, mRNA sequence
Length = 250
Score = 137 bits (69), Expect = 7e-030
Identities = 151/179 (84%)
Strand = Plus / Plus
Query: 68 ggccgcagctgaccctcaacttcgtcgtccagtttttctttctcgcgctctgcggcatca 127
||||||||||||| || | |||||| || ||||| ||| | || ||||| ||||||||||
Sbjct: 64 ggccgcagctgacgctgagcttcgtggtgcagttcttcctgctggcgctgtgcggcatca 123
Query: 128 cggcgaaccaagggttttacctcctgggcctggacaacacgtcgccgacgttcgcgtccg 187
| || ||||| || || |||||||| || || || ||||| || ||||| ||||| ||||
Sbjct: 124 ccgccaaccagggcttctacctcctcggactcganaacacctccccgaccttcgcctccg 183
Query: 188 ccatccagaactcggtcccggccatcaccttcgccatggccgcggcgctgcggatcgag 246
||||||||||||| ||||||||||||||||||||||||| ||| ||||| || ||||||
Sbjct: 184 ccatccagaactccgtcccggccatcaccttcgccatggncgccgcgctccgcatcgag 242
>gb|AU032069.1|AU032069 AU032069 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R3435_1A, mRNA sequence
Length = 292
Score = 131 bits (66), Expect = 4e-028
Identities = 85/92 (92%)
Strand = Plus / Plus
Query: 412 aagaactggacgctgggntgcgtgtacctgatcgggcactgcctgtcgtggtccggctgg 471
||||||||||||||||| ||||||||| ||||||||||||| ||||||||||| || |||
Sbjct: 201 aagaactggacgctgggctgcgtgtacttgatcgggcactgnctgtcgtggtcgggatgg 260
Query: 472 ctggtgctgcaggctcccgtgctgaagaagta 503
|||||||||||||| || ||||||||||||||
Sbjct: 261 ctggtgctgcaggcgccggtgctgaagaagta 292
Score = 103 bits (52), Expect = 1e-019
Identities = 122/143 (85%), Gaps = 2/143 (1%)
Strand = Plus / Plus
Query: 215 ccttcgccatggccgcggcgctgcggatcgagaaggtccggctggaccgccgcgacggcg 274
|||||||||||||||| ||||| || |||||| ||||| || |||||||||||||| |
Sbjct: 1 ccttcgccatggccgccgcgctccgcatcgagcgcgtccgcctcgaccgccgcgacgg-g 59
Query: 275 tagccaaggtggcgggcacgctggcgtgcgtggcggnggcatccgtcatcacgctctaca 334
| || |||||| ||||||||||| ||||| || | || |||||||||||||||||||
Sbjct: 60 tcgc-aaggtgctcggcacgctggcctgcgtcgccggcgcctccgtcatcacgctctaca 118
Query: 335 agggccccaccatcttcggtccc 357
||||||| |||||||||||||||
Sbjct: 119 agggccctaccatcttcggtccc 141
>gb|AU172776.1|AU172776 AU172776 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E30476, mRNA sequence
Length = 387
Score = 52.0 bits (26), Expect = 3e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 357 cggcggcggcggcggcctcgagctggcgtc 386
|||||||||||||||||||||| |||||||
Sbjct: 252 cggcggcggcggcggcctcgagatggcgtc 281
>gb|AACV01002128.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002128, whole
genome shotgun sequence
Length = 69109
Score = 52.0 bits (26), Expect = 3e-004
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 357 cggcggcggcggcggcctcgagctggcgtc 386
|||||||||||||||||||||| |||||||
Sbjct: 32145 cggcggcggcggcggcctcgagatggcgtc 32116
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 52.0 bits (26), Expect = 3e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 357 cggcggcggcggcggcctcgagctggcgtc 386
|||||||||||||||||||||| |||||||
Sbjct: 28386233 cggcggcggcggcggcctcgagatggcgtc 28386262
Score = 44.1 bits (22), Expect = 0.079
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 357 cggcggcggcggcggcctcgagctgg 382
|||||||||||||||| |||||||||
Sbjct: 40823296 cggcggcggcggcggcgtcgagctgg 40823321
>ref|NM_192095.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1272
Score = 52.0 bits (26), Expect = 3e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 357 cggcggcggcggcggcctcgagctggcgtc 386
|||||||||||||||||||||| |||||||
Sbjct: 117 cggcggcggcggcggcctcgagatggcgtc 146
>ref|NT_079927.2| Oryza sativa (japonica cultivar-group)
Length = 14818989
Score = 52.0 bits (26), Expect = 3e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 357 cggcggcggcggcggcctcgagctggcgtc 386
|||||||||||||||||||||| |||||||
Sbjct: 2833616 cggcggcggcggcggcctcgagatggcgtc 2833645
>dbj|AP003455.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0519D04
Length = 193068
Score = 52.0 bits (26), Expect = 3e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 357 cggcggcggcggcggcctcgagctggcgtc 386
|||||||||||||||||||||| |||||||
Sbjct: 20663 cggcggcggcggcggcctcgagatggcgtc 20692
>dbj|AP003452.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0478H03
Length = 167560
Score = 52.0 bits (26), Expect = 3e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 357 cggcggcggcggcggcctcgagctggcgtc 386
|||||||||||||||||||||| |||||||
Sbjct: 140070 cggcggcggcggcggcctcgagatggcgtc 140099
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 52.0 bits (26), Expect = 3e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 357 cggcggcggcggcggcctcgagctggcgtc 386
|||||||||||||||||||||| |||||||
Sbjct: 28305563 cggcggcggcggcggcctcgagatggcgtc 28305592
Score = 44.1 bits (22), Expect = 0.079
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 357 cggcggcggcggcggcctcgagctgg 382
|||||||||||||||| |||||||||
Sbjct: 40742626 cggcggcggcggcggcgtcgagctgg 40742651
>gb|C20278.1|C20278 C20278 Rice panicle at ripening stage Oryza sativa (japonica
cultivar-group) cDNA clone E11781_2A, mRNA sequence
Length = 388
Score = 46.1 bits (23), Expect = 0.020
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 350 tcggtcccggcggcggcggcggc 372
|||||||||||||||||||||||
Sbjct: 22 tcggtcccggcggcggcggcggc 44
>dbj|AP003885.1| Oryza sativa (japonica cultivar-group) chromosome 8 clone OJ1136_E11,
*** SEQUENCING IN PROGRESS ***
Length = 118733
Score = 46.1 bits (23), Expect = 0.020
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 357 cggcggcggcggcggcctcgagc 379
|||||||||||||||||||||||
Sbjct: 70515 cggcggcggcggcggcctcgagc 70493
>dbj|AK059408.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-C04, full
insert sequence
Length = 1152
Score = 46.1 bits (23), Expect = 0.020
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 357 cggcggcggcggcggcctcgagc 379
|||||||||||||||||||||||
Sbjct: 428 cggcggcggcggcggcctcgagc 450
>dbj|AK104119.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-B12, full
insert sequence
Length = 1145
Score = 46.1 bits (23), Expect = 0.020
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 357 cggcggcggcggcggcctcgagc 379
|||||||||||||||||||||||
Sbjct: 425 cggcggcggcggcggcctcgagc 447
>dbj|AP004463.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0456B03
Length = 152973
Score = 46.1 bits (23), Expect = 0.020
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 357 cggcggcggcggcggcctcgagc 379
|||||||||||||||||||||||
Sbjct: 83514 cggcggcggcggcggcctcgagc 83536
>gb|AACV01025750.1| Oryza sativa (japonica cultivar-group) Ctg025750, whole genome
shotgun sequence
Length = 13546
Score = 46.1 bits (23), Expect = 0.020
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 340 cccaccatcttcggtcccggcggcggc 366
||||||||||||||| |||||||||||
Sbjct: 278 cccaccatcttcggtgccggcggcggc 252
>gb|AACV01025969.1| Oryza sativa (japonica cultivar-group) Ctg025969, whole genome
shotgun sequence
Length = 12703
Score = 46.1 bits (23), Expect = 0.020
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 340 cccaccatcttcggtcccggcggcggc 366
||||||||||||||| |||||||||||
Sbjct: 502 cccaccatcttcggtgccggcggcggc 528
>ref|NM_188963.2| Oryza sativa (japonica cultivar-group), mRNA
Length = 1145
Score = 46.1 bits (23), Expect = 0.020
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 357 cggcggcggcggcggcctcgagc 379
|||||||||||||||||||||||
Sbjct: 425 cggcggcggcggcggcctcgagc 447
>ref|XM_507234.1| PREDICTED Oryza sativa (japonica cultivar-group), P0456B03.120 mRNA
Length = 1152
Score = 46.1 bits (23), Expect = 0.020
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 357 cggcggcggcggcggcctcgagc 379
|||||||||||||||||||||||
Sbjct: 428 cggcggcggcggcggcctcgagc 450
>gb|CH401376.1| Oryza sativa (japonica cultivar-group) scaffold000254 genomic
scaffold, whole genome shotgun sequence
Length = 20954
Score = 46.1 bits (23), Expect = 0.020
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 340 cccaccatcttcggtcccggcggcggc 366
||||||||||||||| |||||||||||
Sbjct: 502 cccaccatcttcggtgccggcggcggc 528
>gb|CH401312.1| Oryza sativa (japonica cultivar-group) scaffold000151 genomic
scaffold, whole genome shotgun sequence
Length = 33446
Score = 46.1 bits (23), Expect = 0.020
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 340 cccaccatcttcggtcccggcggcggc 366
||||||||||||||| |||||||||||
Sbjct: 278 cccaccatcttcggtgccggcggcggc 252
>dbj|AK111454.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-183-C02, full
insert sequence
Length = 1569
Score = 44.1 bits (22), Expect = 0.079
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 357 cggcggcggcggcggcctcgagctgg 382
|||||||||||||||| |||||||||
Sbjct: 556 cggcggcggcggcggcgtcgagctgg 531
>dbj|AP005683.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
clone:OJ1585_D02
Length = 103172
Score = 44.1 bits (22), Expect = 0.079
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 491 tgctgaagaagtacccggcacggctggccgtcacctcctacacctgcttcttcg 544
||||||||||||||||||| ||||| | | || | |||||||||||||||||
Sbjct: 62355 tgctgaagaagtacccggcgaggctgtcaatgacgtactacacctgcttcttcg 62408
>gb|AACV01018660.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg018660, whole
genome shotgun sequence
Length = 44297
Score = 44.1 bits (22), Expect = 0.079
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 491 tgctgaagaagtacccggcacggctggccgtcacctcctacacctgcttcttcg 544
||||||||||||||||||| ||||| | | || | |||||||||||||||||
Sbjct: 40580 tgctgaagaagtacccggcgaggctgtcaatgacgtactacacctgcttcttcg 40633
>ref|NM_190000.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1035
Score = 44.1 bits (22), Expect = 0.079
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 357 cggcggcggcggcggcctcgagctgg 382
|||||||||||||||| |||||||||
Sbjct: 205 cggcggcggcggcggcgtcgagctgg 180
>ref|NT_079923.2| Oryza sativa (japonica cultivar-group)
Length = 2970704
Score = 44.1 bits (22), Expect = 0.079
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 357 cggcggcggcggcggcctcgagctgg 382
|||||||||||||||| |||||||||
Sbjct: 451590 cggcggcggcggcggcgtcgagctgg 451615
>ref|NT_107084.1| Oryza sativa (japonica cultivar-group)
Length = 4175757
Score = 44.1 bits (22), Expect = 0.079
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 491 tgctgaagaagtacccggcacggctggccgtcacctcctacacctgcttcttcg 544
||||||||||||||||||| ||||| | | || | |||||||||||||||||
Sbjct: 154593 tgctgaagaagtacccggcgaggctgtcaatgacgtactacacctgcttcttcg 154646
>dbj|AP004330.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:OSJNBa0052O12
Length = 167881
Score = 44.1 bits (22), Expect = 0.079
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 357 cggcggcggcggcggcctcgagctgg 382
|||||||||||||||| |||||||||
Sbjct: 45272 cggcggcggcggcggcgtcgagctgg 45297
>gb|CH401230.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000067 genomic
scaffold, whole genome shotgun sequence
Length = 19501165
Score = 44.1 bits (22), Expect = 0.079
Identities = 46/54 (85%)
Strand = Plus / Minus
Query: 491 tgctgaagaagtacccggcacggctggccgtcacctcctacacctgcttcttcg 544
||||||||||||||||||| ||||| | | || | |||||||||||||||||
Sbjct: 13931096 tgctgaagaagtacccggcgaggctgtcaatgacgtactacacctgcttcttcg 13931043
Score = 42.1 bits (21), Expect = 0.31
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 355 cccggcggcggcggcggcctc 375
|||||||||||||||||||||
Sbjct: 14628810 cccggcggcggcggcggcctc 14628830
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 44.1 bits (22), Expect = 0.079
Identities = 46/54 (85%)
Strand = Plus / Minus
Query: 491 tgctgaagaagtacccggcacggctggccgtcacctcctacacctgcttcttcg 544
||||||||||||||||||| ||||| | | || | |||||||||||||||||
Sbjct: 21533102 tgctgaagaagtacccggcgaggctgtcaatgacgtactacacctgcttcttcg 21533049
Score = 42.1 bits (21), Expect = 0.31
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 355 cccggcggcggcggcggcctc 375
|||||||||||||||||||||
Sbjct: 22230816 cccggcggcggcggcggcctc 22230836
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
sequence
Length = 22696651
Score = 44.1 bits (22), Expect = 0.079
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 491 tgctgaagaagtacccggcacggctggccgtcacctcctacacctgcttcttcg 544
||||||||||||||||||| ||||| | | || | |||||||||||||||||
Sbjct: 14462790 tgctgaagaagtacccggcgaggctgtcaatgacgtactacacctgcttcttcg 14462843
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,044,652
Number of Sequences: 438736
Number of extensions: 2044652
Number of successful extensions: 336385
Number of sequences better than 0.5: 124
Number of HSP's better than 0.5 without gapping: 135
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 305926
Number of HSP's gapped (non-prelim): 30397
length of query: 559
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 538
effective length of database: 2,791,206,460
effective search space: 1501669075480
effective search space used: 1501669075480
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)