BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3871943.2.1
(1085 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_474065.1| Oryza sativa (japonica cultivar-group), p... 797 0.0
gb|AACV01010557.1| Oryza sativa (japonica cultivar-group) c... 791 0.0
ref|NT_107201.1| Oryza sativa (japonica cultivar-group) 791 0.0
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 791 0.0
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 791 0.0
emb|AL731607.3|OSJN00250 Oryza sativa genomic DNA, chromoso... 791 0.0
emb|AL606455.3|OSJN00015 Oryza sativa genomic DNA, chromoso... 791 0.0
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 791 0.0
dbj|AK100257.1| Oryza sativa (japonica cultivar-group) cDNA... 789 0.0
gb|AU172636.1|AU172636 AU172636 Rice panicle at flowering s... 119 3e-024
dbj|AK071728.1| Oryza sativa (japonica cultivar-group) cDNA... 101 8e-019
gb|AACV01017055.1| Oryza sativa (japonica cultivar-group) c... 101 8e-019
ref|XM_479611.1| Oryza sativa (japonica cultivar-group), mRNA 101 8e-019
dbj|AP004316.4| Oryza sativa (japonica cultivar-group) geno... 101 8e-019
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 101 8e-019
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 101 8e-019
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 101 8e-019
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 101 8e-019
gb|C98771.1|C98771 C98771 Rice panicle at flowering stage O... 96 5e-017
dbj|AK072369.1| Oryza sativa (japonica cultivar-group) cDNA... 96 5e-017
dbj|AK121454.1| Oryza sativa (japonica cultivar-group) cDNA... 96 5e-017
dbj|AP005551.3| Oryza sativa (japonica cultivar-group) geno... 96 5e-017
gb|AACV01009904.1| Oryza sativa (japonica cultivar-group) c... 96 5e-017
gb|AACV01020049.1| Oryza sativa (japonica cultivar-group) c... 96 5e-017
ref|XM_472740.1| Oryza sativa (japonica cultivar-group), p... 96 5e-017
ref|NT_079863.2| Oryza sativa (japonica cultivar-group) 96 5e-017
ref|NT_107084.1| Oryza sativa (japonica cultivar-group) 96 5e-017
gb|CH401242.1| Oryza sativa (japonica cultivar-group) chrom... 96 5e-017
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 96 5e-017
emb|AL606636.4|OSJN00075 Oryza sativa genomic DNA, chromoso... 96 5e-017
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 96 5e-017
gb|AQ864513.1|AQ864513 nbeb0023M19f CUGI Rice BAC Library (... 84 2e-013
dbj|AK072779.1| Oryza sativa (japonica cultivar-group) cDNA... 78 1e-011
dbj|AP003798.3| Oryza sativa (japonica cultivar-group) geno... 78 1e-011
gb|AACV01018605.1| Oryza sativa (japonica cultivar-group) c... 78 1e-011
ref|XM_482698.1| Oryza sativa (japonica cultivar-group), mRNA 78 1e-011
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 78 1e-011
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 78 1e-011
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 78 1e-011
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 78 1e-011
dbj|AK070513.1| Oryza sativa (japonica cultivar-group) cDNA... 74 2e-010
gb|AC118668.2| Genomic sequence for Oryza sativa, Nipponbar... 74 2e-010
gb|AACV01000523.1| Oryza sativa (japonica cultivar-group) c... 74 2e-010
gb|AACV01006428.1| Oryza sativa (japonica cultivar-group) c... 74 2e-010
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 74 2e-010
ref|NM_188648.1| Oryza sativa (japonica cultivar-group), Oz... 74 2e-010
ref|NT_036312.3| Oryza sativa (japonica cultivar-group) 74 2e-010
ref|NT_107192.1| Oryza sativa (japonica cultivar-group) 74 2e-010
dbj|AP002481.1| Oryza sativa (japonica cultivar-group) geno... 74 2e-010
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 74 2e-010
gb|CH401164.1| Oryza sativa (japonica cultivar-group) chrom... 74 2e-010
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 74 2e-010
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 74 2e-010
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 74 2e-010
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 74 2e-010
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 74 2e-010
gb|AZ128741.1|AZ128741 OSJNBb0099L14r CUGI Rice BAC Library... 72 7e-010
dbj|AK058651.1| Oryza sativa (japonica cultivar-group) cDNA... 70 3e-009
gb|AACV01018600.1| Oryza sativa (japonica cultivar-group) c... 70 3e-009
ref|XM_482697.1| Oryza sativa (japonica cultivar-group), mRNA 70 3e-009
dbj|AK105110.1| Oryza sativa (japonica cultivar-group) cDNA... 68 1e-008
dbj|AP004849.3| Oryza sativa (japonica cultivar-group) geno... 68 1e-008
gb|AACV01005539.1| Oryza sativa (japonica cultivar-group) c... 68 1e-008
ref|XM_468128.1| Oryza sativa (japonica cultivar-group), mRNA 68 1e-008
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 68 1e-008
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 68 1e-008
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 68 1e-008
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 68 1e-008
gb|C97105.1|C97105 C97105 Rice callus Oryza sativa (japonic... 64 2e-007
gb|AACV01010097.1| Oryza sativa (japonica cultivar-group) c... 62 7e-007
ref|XM_473158.1| Oryza sativa (japonica cultivar-group), p... 62 7e-007
ref|NT_079864.2| Oryza sativa (japonica cultivar-group) 62 7e-007
emb|AL606622.3|OSJN00059 Oryza sativa genomic DNA, chromoso... 62 7e-007
dbj|AP000570.1| Oryza sativa (japonica cultivar-group) geno... 58 1e-005
gb|AACV01000591.1| Oryza sativa (japonica cultivar-group) c... 58 1e-005
ref|NM_187890.1| Oryza sativa (japonica cultivar-group), Oz... 58 1e-005
dbj|AP000492.1| Oryza sativa (japonica cultivar-group) geno... 58 1e-005
dbj|AK069492.1| Oryza sativa (japonica cultivar-group) cDNA... 56 4e-005
dbj|AK100947.1| Oryza sativa (japonica cultivar-group) cDNA... 56 4e-005
dbj|AK107006.1| Oryza sativa (japonica cultivar-group) cDNA... 56 4e-005
dbj|AK107019.1| Oryza sativa (japonica cultivar-group) cDNA... 56 4e-005
dbj|AK107457.1| Oryza sativa (japonica cultivar-group) cDNA... 56 4e-005
gb|AC134348.2| Oryza sativa (japonica cultivar-group) chrom... 56 4e-005
dbj|AP004168.3| Oryza sativa (japonica cultivar-group) geno... 56 4e-005
dbj|AP003722.3| Oryza sativa (japonica cultivar-group) geno... 56 4e-005
gb|AC135929.2| Oryza sativa (japonica cultivar-group) chrom... 56 4e-005
gb|AACV01000866.1| Oryza sativa (japonica cultivar-group) c... 56 4e-005
gb|AACV01003929.1| Oryza sativa (japonica cultivar-group) c... 56 4e-005
gb|AACV01006830.1| Oryza sativa (japonica cultivar-group) c... 56 4e-005
ref|NM_183700.1| Oryza sativa (japonica cultivar-group), p... 56 4e-005
ref|XM_465003.1| Oryza sativa (japonica cultivar-group), mRNA 56 4e-005
ref|XM_470886.1| Oryza sativa (japonica cultivar-group), mRNA 56 4e-005
ref|XM_475113.1| Oryza sativa (japonica cultivar-group), p... 56 4e-005
ref|NT_079854.2| Oryza sativa (japonica cultivar-group) 56 4e-005
ref|NT_079961.2| Oryza sativa (japonica cultivar-group) 56 4e-005
ref|NT_107210.1| Oryza sativa (japonica cultivar-group) 56 4e-005
ref|NT_107178.1| Oryza sativa (japonica cultivar-group) 56 4e-005
gb|CH401174.1| Oryza sativa (japonica cultivar-group) chrom... 56 4e-005
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 56 4e-005
gb|CH401165.1| Oryza sativa (japonica cultivar-group) chrom... 56 4e-005
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 56 4e-005
gb|AC091787.6| Oryza sativa (japonica cultivar-group) chrom... 56 4e-005
dbj|AP003405.1| Oryza sativa (japonica cultivar-group) chro... 54 2e-004
dbj|AK101251.1| Oryza sativa (japonica cultivar-group) cDNA... 54 2e-004
dbj|AK101962.1| Oryza sativa (japonica cultivar-group) cDNA... 54 2e-004
dbj|AK105682.1| Oryza sativa (japonica cultivar-group) cDNA... 54 2e-004
dbj|AP004343.2| Oryza sativa (japonica cultivar-group) geno... 54 2e-004
dbj|AP006268.4| Oryza sativa (japonica cultivar-group) geno... 54 2e-004
gb|AACV01002792.1| Oryza sativa (japonica cultivar-group) c... 54 2e-004
gb|AACV01011953.1| Oryza sativa (japonica cultivar-group) c... 54 2e-004
gb|AACV01017005.1| Oryza sativa (japonica cultivar-group) c... 54 2e-004
ref|NM_190160.1| Oryza sativa (japonica cultivar-group), p... 54 2e-004
ref|XM_479497.1| Oryza sativa (japonica cultivar-group), mRNA 54 2e-004
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 54 2e-004
dbj|AP003227.3| Oryza sativa (japonica cultivar-group) geno... 54 2e-004
gb|CH401205.1| Oryza sativa (japonica cultivar-group) chrom... 54 2e-004
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 54 2e-004
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 54 2e-004
gb|CB651164.1|CB651164 OSJNEb16A10.r OSJNEb Oryza sativa (j... 50 0.003
gb|CB675160.1|CB675160 OSJNEe10L01.r OSJNEe Oryza sativa (j... 50 0.003
dbj|AK109763.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.003
dbj|AK120977.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.003
dbj|AP003345.3| Oryza sativa (japonica cultivar-group) geno... 50 0.003
gb|AACV01002476.1| Oryza sativa (japonica cultivar-group) c... 50 0.003
ref|NM_190847.1| Oryza sativa (japonica cultivar-group), p... 50 0.003
gb|AACV01002791.1| Oryza sativa (japonica cultivar-group) c... 48 0.010
>ref|XM_474065.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 2916
Score = 797 bits (402), Expect = 0.0
Identities = 618/690 (89%)
Strand = Plus / Minus
Query: 330 cccatgacgttgggcgtgccggtgctctgcagccatgacgcgccgtcgatgaaggcgccg 389
|||||||||||||||||| ||||| ||| ||||| | | ||||||||||||| |||||
Sbjct: 2903 cccatgacgttgggcgtggcggtgttcttgagccacgtcaagccgtcgatgaagacgccg 2844
Query: 390 gcggtgaatgccgtggcgtcggcctgtccgatgacgtggtagcctggccagttgaccctc 449
|||||||| |||||| |||||||| ||||||||| |||| || ||||| | ||||||
Sbjct: 2843 gcggtgaactgcgtggcctcggcctggccgatgacgcggtatcccggccacgtcaccctc 2784
Query: 450 ttgctggtgccggcgcccgggccggtgttggcgtactcggcgtagtagagcgtcttgagg 509
||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 2783 ttgcttgtgccggcgcctggcccggtgttggcgtactcggcgtagtagagcgtcttgagc 2724
Query: 510 ccgaggtcgcccatccactccgcccacccttccggcctgatgaggtcgccgatggtgctc 569
|| | ||||||||||||||||| |||||| |||||| |||||| |||||||||| ||||
Sbjct: 2723 cccacgtcgcccatccactccgaccacccctccggcttgatgaagtcgccgatgacgctc 2664
Query: 570 tccatcaccaccgtcctcgcgtactccttccacggccggccgaggtaggtggcgatctgg 629
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct: 2663 tccatcaccaccgtcctcgcgtactccttccatggccggccgaggtagctggcgatctgg 2604
Query: 630 aggcggtcggggaagagcgcctgctccggcacgatgcggcagccctggagcacgatgccc 689
|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 2603 aggcggacggggaagagcgcctgctccggcacgatgcggcaatcctggagcacgatgccg 2544
Query: 690 gtgggcatgttggggtccgtccgcccttgcgccgtcaccatgttggactggctgtccccg 749
||||||||||||||||| || ||||| ||||||||||||||||| | |||| |||||
Sbjct: 2543 gtgggcatgttggggtcggtgcgcccgtgcgccgtcaccatgttcgcctggttgtccatc 2484
Query: 750 ggcttgcgcaccgtcatgaggcagttctggaacagcgccgccgagttgccgaagatgaag 809
||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||| ||
Sbjct: 2483 ggcttccgcaccgtcatgaggcagctctggaacaccgccgccgagttgccgaagatgtag 2424
Query: 810 tccacggtgcccagcacctcgcagtcgcggaagaactgccggttggcgtgcacgtacagc 869
|| | ||| ||| ||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct: 2423 tcgatggtccccgtcacctcgcagttccggaagaactgcctgttggcgtgcacgtacagc 2364
Query: 870 gtgtcctggtacccctcgaaccggcagttgtagaacaccgacttgtcgccctgcacgtgc 929
||||||||||||||||||||| ||||||| ||||||||||| |||| ||||||||||||
Sbjct: 2363 gtgtcctggtacccctcgaacttgcagttgaagaacaccgacatgtccccctgcacgtgc 2304
Query: 930 atcgccaccgcctggtgcccctccggccccgccgtgttcacgaaccccatcgacttgcag 989
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2303 agcgccaccgcctggtgcccctccggccccgccgtgttcacgaaccccatcgacttgcac 2244
Query: 990 atgaacccgttgccctcagcagagaaggtg 1019
| ||| || || ||||| || |||||||||
Sbjct: 2243 acgaatccattcccctccgccgagaaggtg 2214
>gb|AACV01010557.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010557, whole
genome shotgun sequence
Length = 69660
Score = 791 bits (399), Expect = 0.0
Identities = 594/659 (90%)
Strand = Plus / Minus
Query: 330 cccatgacgttgggcgtgccggtgctctgcagccatgacgcgccgtcgatgaaggcgccg 389
|||||||||||||||||| ||||| ||| ||||| | | ||||||||||||| |||||
Sbjct: 55642 cccatgacgttgggcgtggcggtgttcttgagccacgtcaagccgtcgatgaagacgccg 55583
Query: 390 gcggtgaatgccgtggcgtcggcctgtccgatgacgtggtagcctggccagttgaccctc 449
|||||||| |||||| |||||||| ||||||||| |||| || ||||| | ||||||
Sbjct: 55582 gcggtgaactgcgtggcctcggcctggccgatgacgcggtatcccggccacgtcaccctc 55523
Query: 450 ttgctggtgccggcgcccgggccggtgttggcgtactcggcgtagtagagcgtcttgagg 509
||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 55522 ttgcttgtgccggcgcctggcccggtgttggcgtactcggcgtagtagagcgtcttgagc 55463
Query: 510 ccgaggtcgcccatccactccgcccacccttccggcctgatgaggtcgccgatggtgctc 569
|| | ||||||||||||||||| |||||| |||||| |||||| |||||||||| ||||
Sbjct: 55462 cccacgtcgcccatccactccgaccacccctccggcttgatgaagtcgccgatgacgctc 55403
Query: 570 tccatcaccaccgtcctcgcgtactccttccacggccggccgaggtaggtggcgatctgg 629
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct: 55402 tccatcaccaccgtcctcgcgtactccttccatggccggccgaggtagctggcgatctgg 55343
Query: 630 aggcggtcggggaagagcgcctgctccggcacgatgcggcagccctggagcacgatgccc 689
|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 55342 aggcggacggggaagagcgcctgctccggcacgatgcggcaatcctggagcacgatgccg 55283
Query: 690 gtgggcatgttggggtccgtccgcccttgcgccgtcaccatgttggactggctgtccccg 749
||||||||||||||||| || ||||| ||||||||||||||||| | |||| |||||
Sbjct: 55282 gtgggcatgttggggtcggtgcgcccgtgcgccgtcaccatgttcgcctggttgtccatc 55223
Query: 750 ggcttgcgcaccgtcatgaggcagttctggaacagcgccgccgagttgccgaagatgaag 809
||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||| ||
Sbjct: 55222 ggcttccgcaccgtcatgaggcagctctggaacaccgccgccgagttgccgaagatgtag 55163
Query: 810 tccacggtgcccagcacctcgcagtcgcggaagaactgccggttggcgtgcacgtacagc 869
|| | ||| ||| ||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct: 55162 tcgatggtccccgtcacctcgcagttccggaagaactgcctgttggcgtgcacgtacagc 55103
Query: 870 gtgtcctggtacccctcgaaccggcagttgtagaacaccgacttgtcgccctgcacgtgc 929
||||||||||||||||||||| ||||||| ||||||||||| |||| ||||||||||||
Sbjct: 55102 gtgtcctggtacccctcgaacttgcagttgaagaacaccgacatgtccccctgcacgtgc 55043
Query: 930 atcgccaccgcctggtgcccctccggccccgccgtgttcacgaaccccatcgacttgca 988
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55042 agcgccaccgcctggtgcccctccggccccgccgtgttcacgaaccccatcgacttgca 54984
>ref|NT_107201.1| Oryza sativa (japonica cultivar-group)
Length = 2893592
Score = 791 bits (399), Expect = 0.0
Identities = 594/659 (90%)
Strand = Plus / Minus
Query: 330 cccatgacgttgggcgtgccggtgctctgcagccatgacgcgccgtcgatgaaggcgccg 389
|||||||||||||||||| ||||| ||| ||||| | | ||||||||||||| |||||
Sbjct: 57769 cccatgacgttgggcgtggcggtgttcttgagccacgtcaagccgtcgatgaagacgccg 57710
Query: 390 gcggtgaatgccgtggcgtcggcctgtccgatgacgtggtagcctggccagttgaccctc 449
|||||||| |||||| |||||||| ||||||||| |||| || ||||| | ||||||
Sbjct: 57709 gcggtgaactgcgtggcctcggcctggccgatgacgcggtatcccggccacgtcaccctc 57650
Query: 450 ttgctggtgccggcgcccgggccggtgttggcgtactcggcgtagtagagcgtcttgagg 509
||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 57649 ttgcttgtgccggcgcctggcccggtgttggcgtactcggcgtagtagagcgtcttgagc 57590
Query: 510 ccgaggtcgcccatccactccgcccacccttccggcctgatgaggtcgccgatggtgctc 569
|| | ||||||||||||||||| |||||| |||||| |||||| |||||||||| ||||
Sbjct: 57589 cccacgtcgcccatccactccgaccacccctccggcttgatgaagtcgccgatgacgctc 57530
Query: 570 tccatcaccaccgtcctcgcgtactccttccacggccggccgaggtaggtggcgatctgg 629
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct: 57529 tccatcaccaccgtcctcgcgtactccttccatggccggccgaggtagctggcgatctgg 57470
Query: 630 aggcggtcggggaagagcgcctgctccggcacgatgcggcagccctggagcacgatgccc 689
|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 57469 aggcggacggggaagagcgcctgctccggcacgatgcggcaatcctggagcacgatgccg 57410
Query: 690 gtgggcatgttggggtccgtccgcccttgcgccgtcaccatgttggactggctgtccccg 749
||||||||||||||||| || ||||| ||||||||||||||||| | |||| |||||
Sbjct: 57409 gtgggcatgttggggtcggtgcgcccgtgcgccgtcaccatgttcgcctggttgtccatc 57350
Query: 750 ggcttgcgcaccgtcatgaggcagttctggaacagcgccgccgagttgccgaagatgaag 809
||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||| ||
Sbjct: 57349 ggcttccgcaccgtcatgaggcagctctggaacaccgccgccgagttgccgaagatgtag 57290
Query: 810 tccacggtgcccagcacctcgcagtcgcggaagaactgccggttggcgtgcacgtacagc 869
|| | ||| ||| ||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct: 57289 tcgatggtccccgtcacctcgcagttccggaagaactgcctgttggcgtgcacgtacagc 57230
Query: 870 gtgtcctggtacccctcgaaccggcagttgtagaacaccgacttgtcgccctgcacgtgc 929
||||||||||||||||||||| ||||||| ||||||||||| |||| ||||||||||||
Sbjct: 57229 gtgtcctggtacccctcgaacttgcagttgaagaacaccgacatgtccccctgcacgtgc 57170
Query: 930 atcgccaccgcctggtgcccctccggccccgccgtgttcacgaaccccatcgacttgca 988
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57169 agcgccaccgcctggtgcccctccggccccgccgtgttcacgaaccccatcgacttgca 57111
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 791 bits (399), Expect = 0.0
Identities = 594/659 (90%)
Strand = Plus / Minus
Query: 330 cccatgacgttgggcgtgccggtgctctgcagccatgacgcgccgtcgatgaaggcgccg 389
|||||||||||||||||| ||||| ||| ||||| | | ||||||||||||| |||||
Sbjct: 10346513 cccatgacgttgggcgtggcggtgttcttgagccacgtcaagccgtcgatgaagacgccg 10346454
Query: 390 gcggtgaatgccgtggcgtcggcctgtccgatgacgtggtagcctggccagttgaccctc 449
|||||||| |||||| |||||||| ||||||||| |||| || ||||| | ||||||
Sbjct: 10346453 gcggtgaactgcgtggcctcggcctggccgatgacgcggtatcccggccacgtcaccctc 10346394
Query: 450 ttgctggtgccggcgcccgggccggtgttggcgtactcggcgtagtagagcgtcttgagg 509
||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 10346393 ttgcttgtgccggcgcctggcccggtgttggcgtactcggcgtagtagagcgtcttgagc 10346334
Query: 510 ccgaggtcgcccatccactccgcccacccttccggcctgatgaggtcgccgatggtgctc 569
|| | ||||||||||||||||| |||||| |||||| |||||| |||||||||| ||||
Sbjct: 10346333 cccacgtcgcccatccactccgaccacccctccggcttgatgaagtcgccgatgacgctc 10346274
Query: 570 tccatcaccaccgtcctcgcgtactccttccacggccggccgaggtaggtggcgatctgg 629
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct: 10346273 tccatcaccaccgtcctcgcgtactccttccatggccggccgaggtagctggcgatctgg 10346214
Query: 630 aggcggtcggggaagagcgcctgctccggcacgatgcggcagccctggagcacgatgccc 689
|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 10346213 aggcggacggggaagagcgcctgctccggcacgatgcggcaatcctggagcacgatgccg 10346154
Query: 690 gtgggcatgttggggtccgtccgcccttgcgccgtcaccatgttggactggctgtccccg 749
||||||||||||||||| || ||||| ||||||||||||||||| | |||| |||||
Sbjct: 10346153 gtgggcatgttggggtcggtgcgcccgtgcgccgtcaccatgttcgcctggttgtccatc 10346094
Query: 750 ggcttgcgcaccgtcatgaggcagttctggaacagcgccgccgagttgccgaagatgaag 809
||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||| ||
Sbjct: 10346093 ggcttccgcaccgtcatgaggcagctctggaacaccgccgccgagttgccgaagatgtag 10346034
Query: 810 tccacggtgcccagcacctcgcagtcgcggaagaactgccggttggcgtgcacgtacagc 869
|| | ||| ||| ||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct: 10346033 tcgatggtccccgtcacctcgcagttccggaagaactgcctgttggcgtgcacgtacagc 10345974
Query: 870 gtgtcctggtacccctcgaaccggcagttgtagaacaccgacttgtcgccctgcacgtgc 929
||||||||||||||||||||| ||||||| ||||||||||| |||| ||||||||||||
Sbjct: 10345973 gtgtcctggtacccctcgaacttgcagttgaagaacaccgacatgtccccctgcacgtgc 10345914
Query: 930 atcgccaccgcctggtgcccctccggccccgccgtgttcacgaaccccatcgacttgca 988
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10345913 agcgccaccgcctggtgcccctccggccccgccgtgttcacgaaccccatcgacttgca 10345855
Score = 95.6 bits (48), Expect = 5e-017
Identities = 117/140 (83%)
Strand = Plus / Plus
Query: 765 atgaggcagttctggaacagcgccgccgagttgccgaagatgaagtccacggtgcccagc 824
||||||||||||||||| | || || |||||||||||||||||||| | ||||||
Sbjct: 764980 atgaggcagttctggaagacggcggcggagttgccgaagatgaagtcgatggtgccggag 765039
Query: 825 acctcgcagtcgcggaagaactgccggttggcgtgcacgtacagcgtgtcctggtacccc 884
| |||||| |||||||||||| || ||||||||||||||| ||||||||| || |
Sbjct: 765040 atgacgcagttgcggaagaactggcgccgggcgtgcacgtacagggtgtcctggaacgcg 765099
Query: 885 tcgaaccggcagttgtagaa 904
||||||||||||||||||||
Sbjct: 765100 tcgaaccggcagttgtagaa 765119
Score = 71.9 bits (36), Expect = 7e-010
Identities = 63/72 (87%)
Strand = Plus / Plus
Query: 437 ccagttgaccctcttgctggtgccggcgcccgggccggtgttggcgtactcggcgtagta 496
||||||||| | |||||||||||||||||| |||||| |||| | |||||||||||||
Sbjct: 764652 ccagttgacgcgcttgctggtgccggcgccggggccgcggttgttgaactcggcgtagta 764711
Query: 497 gagcgtcttgag 508
|||||| |||||
Sbjct: 764712 gagcgtgttgag 764723
Score = 61.9 bits (31), Expect = 7e-007
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 841 agaactgccggttggcgtgcacgtacagcgtgtcctggtacccctcgaaccggcagttg 899
||||||| |||| ||| ||| || ||||||||||||||| |||||||| ||||||||||
Sbjct: 3502248 agaactggcggtaggcctgcgcgaacagcgtgtcctggttcccctcgatccggcagttg 3502306
Score = 54.0 bits (27), Expect = 2e-004
Identities = 111/139 (79%)
Strand = Plus / Plus
Query: 590 gtactccttccacggccggccgaggtaggtggcgatctggaggcggtcggggaagagcgc 649
|||||||||||| || ||||||||||||| || ||||| || | ||| |||||||||
Sbjct: 764805 gtactccttccatgggcggccgaggtaggaggggatcttgaacctgtccgggaagagctt 764864
Query: 650 ctgctccggcacgatgcggcagccctggagcacgatgcccgtgggcatgttggggtccgt 709
||| || ||||||| ||||||| ||||| |||| ||| | |||||||||||| ||
Sbjct: 764865 ctggtcgggcacgaggcggcagttctggatgacgaggccggacttcatgttggggtcggt 764924
Query: 710 ccgcccttgcgccgtcacc 728
|| || ||||||||||||
Sbjct: 764925 gcggccgtgcgccgtcacc 764943
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 791 bits (399), Expect = 0.0
Identities = 594/659 (90%)
Strand = Plus / Minus
Query: 330 cccatgacgttgggcgtgccggtgctctgcagccatgacgcgccgtcgatgaaggcgccg 389
|||||||||||||||||| ||||| ||| ||||| | | ||||||||||||| |||||
Sbjct: 29490612 cccatgacgttgggcgtggcggtgttcttgagccacgtcaagccgtcgatgaagacgccg 29490553
Query: 390 gcggtgaatgccgtggcgtcggcctgtccgatgacgtggtagcctggccagttgaccctc 449
|||||||| |||||| |||||||| ||||||||| |||| || ||||| | ||||||
Sbjct: 29490552 gcggtgaactgcgtggcctcggcctggccgatgacgcggtatcccggccacgtcaccctc 29490493
Query: 450 ttgctggtgccggcgcccgggccggtgttggcgtactcggcgtagtagagcgtcttgagg 509
||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 29490492 ttgcttgtgccggcgcctggcccggtgttggcgtactcggcgtagtagagcgtcttgagc 29490433
Query: 510 ccgaggtcgcccatccactccgcccacccttccggcctgatgaggtcgccgatggtgctc 569
|| | ||||||||||||||||| |||||| |||||| |||||| |||||||||| ||||
Sbjct: 29490432 cccacgtcgcccatccactccgaccacccctccggcttgatgaagtcgccgatgacgctc 29490373
Query: 570 tccatcaccaccgtcctcgcgtactccttccacggccggccgaggtaggtggcgatctgg 629
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct: 29490372 tccatcaccaccgtcctcgcgtactccttccatggccggccgaggtagctggcgatctgg 29490313
Query: 630 aggcggtcggggaagagcgcctgctccggcacgatgcggcagccctggagcacgatgccc 689
|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 29490312 aggcggacggggaagagcgcctgctccggcacgatgcggcaatcctggagcacgatgccg 29490253
Query: 690 gtgggcatgttggggtccgtccgcccttgcgccgtcaccatgttggactggctgtccccg 749
||||||||||||||||| || ||||| ||||||||||||||||| | |||| |||||
Sbjct: 29490252 gtgggcatgttggggtcggtgcgcccgtgcgccgtcaccatgttcgcctggttgtccatc 29490193
Query: 750 ggcttgcgcaccgtcatgaggcagttctggaacagcgccgccgagttgccgaagatgaag 809
||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||| ||
Sbjct: 29490192 ggcttccgcaccgtcatgaggcagctctggaacaccgccgccgagttgccgaagatgtag 29490133
Query: 810 tccacggtgcccagcacctcgcagtcgcggaagaactgccggttggcgtgcacgtacagc 869
|| | ||| ||| ||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct: 29490132 tcgatggtccccgtcacctcgcagttccggaagaactgcctgttggcgtgcacgtacagc 29490073
Query: 870 gtgtcctggtacccctcgaaccggcagttgtagaacaccgacttgtcgccctgcacgtgc 929
||||||||||||||||||||| ||||||| ||||||||||| |||| ||||||||||||
Sbjct: 29490072 gtgtcctggtacccctcgaacttgcagttgaagaacaccgacatgtccccctgcacgtgc 29490013
Query: 930 atcgccaccgcctggtgcccctccggccccgccgtgttcacgaaccccatcgacttgca 988
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29490012 agcgccaccgcctggtgcccctccggccccgccgtgttcacgaaccccatcgacttgca 29489954
Score = 95.6 bits (48), Expect = 5e-017
Identities = 117/140 (83%)
Strand = Plus / Plus
Query: 765 atgaggcagttctggaacagcgccgccgagttgccgaagatgaagtccacggtgcccagc 824
||||||||||||||||| | || || |||||||||||||||||||| | ||||||
Sbjct: 19909079 atgaggcagttctggaagacggcggcggagttgccgaagatgaagtcgatggtgccggag 19909138
Query: 825 acctcgcagtcgcggaagaactgccggttggcgtgcacgtacagcgtgtcctggtacccc 884
| |||||| |||||||||||| || ||||||||||||||| ||||||||| || |
Sbjct: 19909139 atgacgcagttgcggaagaactggcgccgggcgtgcacgtacagggtgtcctggaacgcg 19909198
Query: 885 tcgaaccggcagttgtagaa 904
||||||||||||||||||||
Sbjct: 19909199 tcgaaccggcagttgtagaa 19909218
Score = 71.9 bits (36), Expect = 7e-010
Identities = 63/72 (87%)
Strand = Plus / Plus
Query: 437 ccagttgaccctcttgctggtgccggcgcccgggccggtgttggcgtactcggcgtagta 496
||||||||| | |||||||||||||||||| |||||| |||| | |||||||||||||
Sbjct: 19908751 ccagttgacgcgcttgctggtgccggcgccggggccgcggttgttgaactcggcgtagta 19908810
Query: 497 gagcgtcttgag 508
|||||| |||||
Sbjct: 19908811 gagcgtgttgag 19908822
Score = 61.9 bits (31), Expect = 7e-007
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 841 agaactgccggttggcgtgcacgtacagcgtgtcctggtacccctcgaaccggcagttg 899
||||||| |||| ||| ||| || ||||||||||||||| |||||||| ||||||||||
Sbjct: 22646347 agaactggcggtaggcctgcgcgaacagcgtgtcctggttcccctcgatccggcagttg 22646405
Score = 54.0 bits (27), Expect = 2e-004
Identities = 111/139 (79%)
Strand = Plus / Plus
Query: 590 gtactccttccacggccggccgaggtaggtggcgatctggaggcggtcggggaagagcgc 649
|||||||||||| || ||||||||||||| || ||||| || | ||| |||||||||
Sbjct: 19908904 gtactccttccatgggcggccgaggtaggaggggatcttgaacctgtccgggaagagctt 19908963
Query: 650 ctgctccggcacgatgcggcagccctggagcacgatgcccgtgggcatgttggggtccgt 709
||| || ||||||| ||||||| ||||| |||| ||| | |||||||||||| ||
Sbjct: 19908964 ctggtcgggcacgaggcggcagttctggatgacgaggccggacttcatgttggggtcggt 19909023
Query: 710 ccgcccttgcgccgtcacc 728
|| || ||||||||||||
Sbjct: 19909024 gcggccgtgcgccgtcacc 19909042
>emb|AL731607.3|OSJN00250 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0063C18,
complete sequence
Length = 150416
Score = 791 bits (399), Expect = 0.0
Identities = 594/659 (90%)
Strand = Plus / Minus
Query: 330 cccatgacgttgggcgtgccggtgctctgcagccatgacgcgccgtcgatgaaggcgccg 389
|||||||||||||||||| ||||| ||| ||||| | | ||||||||||||| |||||
Sbjct: 22183 cccatgacgttgggcgtggcggtgttcttgagccacgtcaagccgtcgatgaagacgccg 22124
Query: 390 gcggtgaatgccgtggcgtcggcctgtccgatgacgtggtagcctggccagttgaccctc 449
|||||||| |||||| |||||||| ||||||||| |||| || ||||| | ||||||
Sbjct: 22123 gcggtgaactgcgtggcctcggcctggccgatgacgcggtatcccggccacgtcaccctc 22064
Query: 450 ttgctggtgccggcgcccgggccggtgttggcgtactcggcgtagtagagcgtcttgagg 509
||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 22063 ttgcttgtgccggcgcctggcccggtgttggcgtactcggcgtagtagagcgtcttgagc 22004
Query: 510 ccgaggtcgcccatccactccgcccacccttccggcctgatgaggtcgccgatggtgctc 569
|| | ||||||||||||||||| |||||| |||||| |||||| |||||||||| ||||
Sbjct: 22003 cccacgtcgcccatccactccgaccacccctccggcttgatgaagtcgccgatgacgctc 21944
Query: 570 tccatcaccaccgtcctcgcgtactccttccacggccggccgaggtaggtggcgatctgg 629
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct: 21943 tccatcaccaccgtcctcgcgtactccttccatggccggccgaggtagctggcgatctgg 21884
Query: 630 aggcggtcggggaagagcgcctgctccggcacgatgcggcagccctggagcacgatgccc 689
|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 21883 aggcggacggggaagagcgcctgctccggcacgatgcggcaatcctggagcacgatgccg 21824
Query: 690 gtgggcatgttggggtccgtccgcccttgcgccgtcaccatgttggactggctgtccccg 749
||||||||||||||||| || ||||| ||||||||||||||||| | |||| |||||
Sbjct: 21823 gtgggcatgttggggtcggtgcgcccgtgcgccgtcaccatgttcgcctggttgtccatc 21764
Query: 750 ggcttgcgcaccgtcatgaggcagttctggaacagcgccgccgagttgccgaagatgaag 809
||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||| ||
Sbjct: 21763 ggcttccgcaccgtcatgaggcagctctggaacaccgccgccgagttgccgaagatgtag 21704
Query: 810 tccacggtgcccagcacctcgcagtcgcggaagaactgccggttggcgtgcacgtacagc 869
|| | ||| ||| ||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct: 21703 tcgatggtccccgtcacctcgcagttccggaagaactgcctgttggcgtgcacgtacagc 21644
Query: 870 gtgtcctggtacccctcgaaccggcagttgtagaacaccgacttgtcgccctgcacgtgc 929
||||||||||||||||||||| ||||||| ||||||||||| |||| ||||||||||||
Sbjct: 21643 gtgtcctggtacccctcgaacttgcagttgaagaacaccgacatgtccccctgcacgtgc 21584
Query: 930 atcgccaccgcctggtgcccctccggccccgccgtgttcacgaaccccatcgacttgca 988
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21583 agcgccaccgcctggtgcccctccggccccgccgtgttcacgaaccccatcgacttgca 21525
>emb|AL606455.3|OSJN00015 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0079B02,
complete sequence
Length = 126659
Score = 791 bits (399), Expect = 0.0
Identities = 594/659 (90%)
Strand = Plus / Minus
Query: 330 cccatgacgttgggcgtgccggtgctctgcagccatgacgcgccgtcgatgaaggcgccg 389
|||||||||||||||||| ||||| ||| ||||| | | ||||||||||||| |||||
Sbjct: 57769 cccatgacgttgggcgtggcggtgttcttgagccacgtcaagccgtcgatgaagacgccg 57710
Query: 390 gcggtgaatgccgtggcgtcggcctgtccgatgacgtggtagcctggccagttgaccctc 449
|||||||| |||||| |||||||| ||||||||| |||| || ||||| | ||||||
Sbjct: 57709 gcggtgaactgcgtggcctcggcctggccgatgacgcggtatcccggccacgtcaccctc 57650
Query: 450 ttgctggtgccggcgcccgggccggtgttggcgtactcggcgtagtagagcgtcttgagg 509
||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 57649 ttgcttgtgccggcgcctggcccggtgttggcgtactcggcgtagtagagcgtcttgagc 57590
Query: 510 ccgaggtcgcccatccactccgcccacccttccggcctgatgaggtcgccgatggtgctc 569
|| | ||||||||||||||||| |||||| |||||| |||||| |||||||||| ||||
Sbjct: 57589 cccacgtcgcccatccactccgaccacccctccggcttgatgaagtcgccgatgacgctc 57530
Query: 570 tccatcaccaccgtcctcgcgtactccttccacggccggccgaggtaggtggcgatctgg 629
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct: 57529 tccatcaccaccgtcctcgcgtactccttccatggccggccgaggtagctggcgatctgg 57470
Query: 630 aggcggtcggggaagagcgcctgctccggcacgatgcggcagccctggagcacgatgccc 689
|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 57469 aggcggacggggaagagcgcctgctccggcacgatgcggcaatcctggagcacgatgccg 57410
Query: 690 gtgggcatgttggggtccgtccgcccttgcgccgtcaccatgttggactggctgtccccg 749
||||||||||||||||| || ||||| ||||||||||||||||| | |||| |||||
Sbjct: 57409 gtgggcatgttggggtcggtgcgcccgtgcgccgtcaccatgttcgcctggttgtccatc 57350
Query: 750 ggcttgcgcaccgtcatgaggcagttctggaacagcgccgccgagttgccgaagatgaag 809
||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||| ||
Sbjct: 57349 ggcttccgcaccgtcatgaggcagctctggaacaccgccgccgagttgccgaagatgtag 57290
Query: 810 tccacggtgcccagcacctcgcagtcgcggaagaactgccggttggcgtgcacgtacagc 869
|| | ||| ||| ||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct: 57289 tcgatggtccccgtcacctcgcagttccggaagaactgcctgttggcgtgcacgtacagc 57230
Query: 870 gtgtcctggtacccctcgaaccggcagttgtagaacaccgacttgtcgccctgcacgtgc 929
||||||||||||||||||||| ||||||| ||||||||||| |||| ||||||||||||
Sbjct: 57229 gtgtcctggtacccctcgaacttgcagttgaagaacaccgacatgtccccctgcacgtgc 57170
Query: 930 atcgccaccgcctggtgcccctccggccccgccgtgttcacgaaccccatcgacttgca 988
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57169 agcgccaccgcctggtgcccctccggccccgccgtgttcacgaaccccatcgacttgca 57111
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 791 bits (399), Expect = 0.0
Identities = 594/659 (90%)
Strand = Plus / Minus
Query: 330 cccatgacgttgggcgtgccggtgctctgcagccatgacgcgccgtcgatgaaggcgccg 389
|||||||||||||||||| ||||| ||| ||||| | | ||||||||||||| |||||
Sbjct: 32662748 cccatgacgttgggcgtggcggtgttcttgagccacgtcaagccgtcgatgaagacgccg 32662689
Query: 390 gcggtgaatgccgtggcgtcggcctgtccgatgacgtggtagcctggccagttgaccctc 449
|||||||| |||||| |||||||| ||||||||| |||| || ||||| | ||||||
Sbjct: 32662688 gcggtgaactgcgtggcctcggcctggccgatgacgcggtatcccggccacgtcaccctc 32662629
Query: 450 ttgctggtgccggcgcccgggccggtgttggcgtactcggcgtagtagagcgtcttgagg 509
||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 32662628 ttgcttgtgccggcgcctggcccggtgttggcgtactcggcgtagtagagcgtcttgagc 32662569
Query: 510 ccgaggtcgcccatccactccgcccacccttccggcctgatgaggtcgccgatggtgctc 569
|| | ||||||||||||||||| |||||| |||||| |||||| |||||||||| ||||
Sbjct: 32662568 cccacgtcgcccatccactccgaccacccctccggcttgatgaagtcgccgatgacgctc 32662509
Query: 570 tccatcaccaccgtcctcgcgtactccttccacggccggccgaggtaggtggcgatctgg 629
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct: 32662508 tccatcaccaccgtcctcgcgtactccttccatggccggccgaggtagctggcgatctgg 32662449
Query: 630 aggcggtcggggaagagcgcctgctccggcacgatgcggcagccctggagcacgatgccc 689
|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 32662448 aggcggacggggaagagcgcctgctccggcacgatgcggcaatcctggagcacgatgccg 32662389
Query: 690 gtgggcatgttggggtccgtccgcccttgcgccgtcaccatgttggactggctgtccccg 749
||||||||||||||||| || ||||| ||||||||||||||||| | |||| |||||
Sbjct: 32662388 gtgggcatgttggggtcggtgcgcccgtgcgccgtcaccatgttcgcctggttgtccatc 32662329
Query: 750 ggcttgcgcaccgtcatgaggcagttctggaacagcgccgccgagttgccgaagatgaag 809
||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||| ||
Sbjct: 32662328 ggcttccgcaccgtcatgaggcagctctggaacaccgccgccgagttgccgaagatgtag 32662269
Query: 810 tccacggtgcccagcacctcgcagtcgcggaagaactgccggttggcgtgcacgtacagc 869
|| | ||| ||| ||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct: 32662268 tcgatggtccccgtcacctcgcagttccggaagaactgcctgttggcgtgcacgtacagc 32662209
Query: 870 gtgtcctggtacccctcgaaccggcagttgtagaacaccgacttgtcgccctgcacgtgc 929
||||||||||||||||||||| ||||||| ||||||||||| |||| ||||||||||||
Sbjct: 32662208 gtgtcctggtacccctcgaacttgcagttgaagaacaccgacatgtccccctgcacgtgc 32662149
Query: 930 atcgccaccgcctggtgcccctccggccccgccgtgttcacgaaccccatcgacttgca 988
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32662148 agcgccaccgcctggtgcccctccggccccgccgtgttcacgaaccccatcgacttgca 32662090
Score = 95.6 bits (48), Expect = 5e-017
Identities = 117/140 (83%)
Strand = Plus / Plus
Query: 765 atgaggcagttctggaacagcgccgccgagttgccgaagatgaagtccacggtgcccagc 824
||||||||||||||||| | || || |||||||||||||||||||| | ||||||
Sbjct: 22885807 atgaggcagttctggaagacggcggcggagttgccgaagatgaagtcgatggtgccggag 22885866
Query: 825 acctcgcagtcgcggaagaactgccggttggcgtgcacgtacagcgtgtcctggtacccc 884
| |||||| |||||||||||| || ||||||||||||||| ||||||||| || |
Sbjct: 22885867 atgacgcagttgcggaagaactggcgccgggcgtgcacgtacagggtgtcctggaacgcg 22885926
Query: 885 tcgaaccggcagttgtagaa 904
||||||||||||||||||||
Sbjct: 22885927 tcgaaccggcagttgtagaa 22885946
Score = 71.9 bits (36), Expect = 7e-010
Identities = 63/72 (87%)
Strand = Plus / Plus
Query: 437 ccagttgaccctcttgctggtgccggcgcccgggccggtgttggcgtactcggcgtagta 496
||||||||| | |||||||||||||||||| |||||| |||| | |||||||||||||
Sbjct: 22885479 ccagttgacgcgcttgctggtgccggcgccggggccgcggttgttgaactcggcgtagta 22885538
Query: 497 gagcgtcttgag 508
|||||| |||||
Sbjct: 22885539 gagcgtgttgag 22885550
Score = 61.9 bits (31), Expect = 7e-007
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 841 agaactgccggttggcgtgcacgtacagcgtgtcctggtacccctcgaaccggcagttg 899
||||||| |||| ||| ||| || ||||||||||||||| |||||||| ||||||||||
Sbjct: 25619756 agaactggcggtaggcctgcgcgaacagcgtgtcctggttcccctcgatccggcagttg 25619814
Score = 54.0 bits (27), Expect = 2e-004
Identities = 111/139 (79%)
Strand = Plus / Plus
Query: 590 gtactccttccacggccggccgaggtaggtggcgatctggaggcggtcggggaagagcgc 649
|||||||||||| || ||||||||||||| || ||||| || | ||| |||||||||
Sbjct: 22885632 gtactccttccatgggcggccgaggtaggaggggatcttgaacctgtccgggaagagctt 22885691
Query: 650 ctgctccggcacgatgcggcagccctggagcacgatgcccgtgggcatgttggggtccgt 709
||| || ||||||| ||||||| ||||| |||| ||| | |||||||||||| ||
Sbjct: 22885692 ctggtcgggcacgaggcggcagttctggatgacgaggccggacttcatgttggggtcggt 22885751
Query: 710 ccgcccttgcgccgtcacc 728
|| || ||||||||||||
Sbjct: 22885752 gcggccgtgcgccgtcacc 22885770
>dbj|AK100257.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023061N09, full
insert sequence
Length = 3236
Score = 789 bits (398), Expect = 0.0
Identities = 617/690 (89%)
Strand = Plus / Minus
Query: 330 cccatgacgttgggcgtgccggtgctctgcagccatgacgcgccgtcgatgaaggcgccg 389
|||||||||||||||||| ||||| ||| ||||| | | ||||||||||||| |||||
Sbjct: 2943 cccatgacgttgggcgtggcggtgttcttgagccacgtcaagccgtcgatgaagacgccg 2884
Query: 390 gcggtgaatgccgtggcgtcggcctgtccgatgacgtggtagcctggccagttgaccctc 449
|||||||| |||||| |||||||| ||||||||| |||| || ||||| | ||||||
Sbjct: 2883 gcggtgaactgcgtggcctcggcctggccgatgacgcggtatcccggccacgtcaccctc 2824
Query: 450 ttgctggtgccggcgcccgggccggtgttggcgtactcggcgtagtagagcgtcttgagg 509
||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 2823 ttgcttgtgccggcgcctggcccggtgttggcgtactcggcgtagtagagcgtcttgagc 2764
Query: 510 ccgaggtcgcccatccactccgcccacccttccggcctgatgaggtcgccgatggtgctc 569
|| | ||||||||||||||||| |||||| |||||| |||||| |||||||||| ||||
Sbjct: 2763 cccacgtcgcccatccactccgaccacccctccggcttgatgaagtcgccgatgacgctc 2704
Query: 570 tccatcaccaccgtcctcgcgtactccttccacggccggccgaggtaggtggcgatctgg 629
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct: 2703 tccatcaccaccgtcctcgcgtactccttccatggccggccgaggtagctggcgatctgg 2644
Query: 630 aggcggtcggggaagagcgcctgctccggcacgatgcggcagccctggagcacgatgccc 689
|||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct: 2643 aggcggacggggaagagcgcctgctccggcacgatgtggcaatcctggagcacgatgccg 2584
Query: 690 gtgggcatgttggggtccgtccgcccttgcgccgtcaccatgttggactggctgtccccg 749
||||||||||||||||| || ||||| ||||||||||||||||| | |||| |||||
Sbjct: 2583 gtgggcatgttggggtcggtgcgcccgtgcgccgtcaccatgttcgcctggttgtccatc 2524
Query: 750 ggcttgcgcaccgtcatgaggcagttctggaacagcgccgccgagttgccgaagatgaag 809
||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||| ||
Sbjct: 2523 ggcttccgcaccgtcatgaggcagctctggaacaccgccgccgagttgccgaagatgtag 2464
Query: 810 tccacggtgcccagcacctcgcagtcgcggaagaactgccggttggcgtgcacgtacagc 869
|| | ||| ||| ||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct: 2463 tcgatggtccccgtcacctcgcagttccggaagaactgcctgttggcgtgcacgtacagc 2404
Query: 870 gtgtcctggtacccctcgaaccggcagttgtagaacaccgacttgtcgccctgcacgtgc 929
||||||||||||||||||||| ||||||| ||||||||||| |||| ||||||||||||
Sbjct: 2403 gtgtcctggtacccctcgaacttgcagttgaagaacaccgacatgtccccctgcacgtgc 2344
Query: 930 atcgccaccgcctggtgcccctccggccccgccgtgttcacgaaccccatcgacttgcag 989
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2343 agcgccaccgcctggtgcccctccggccccgccgtgttcacgaaccccatcgacttgcac 2284
Query: 990 atgaacccgttgccctcagcagagaaggtg 1019
| ||| || || ||||| || |||||||||
Sbjct: 2283 acgaatccattcccctccgccgagaaggtg 2254
>gb|AU172636.1|AU172636 AU172636 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E3074, mRNA sequence
Length = 436
Score = 119 bits (60), Expect = 3e-024
Identities = 129/152 (84%)
Strand = Plus / Minus
Query: 330 cccatgacgttgggcgtgccggtgctctgcagccatgacgcgccgtcgatgaaggcgccg 389
|||||||||||||||||| ||||| ||| ||||| | | ||||||||||||| |||||
Sbjct: 152 cccatgacgttgggcgtggcggtgttcttgagccacgtcaagccgtcgatgaagacgccg 93
Query: 390 gcggtgaatgccgtggcgtcggcctgtccgatgacgtggtagcctggccagttgaccctc 449
|||||||| |||||| |||||||| ||||||||| |||| || ||||| | ||||||
Sbjct: 92 gcggtgaactgcgtggcctcggcctggccgatgacgcggtatcccggccacgtcaccctc 33
Query: 450 ttgctggtgccggcgcccgggccggtgttggc 481
||||| ||||||||||| || |||||||||||
Sbjct: 32 ttgcttgtgccggcgcctggcccggtgttggc 1
>dbj|AK071728.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023112F11, full
insert sequence
Length = 2119
Score = 101 bits (51), Expect = 8e-019
Identities = 117/139 (84%)
Strand = Plus / Minus
Query: 830 gcagtcgcggaagaactgccggttggcgtgcacgtacagcgtgtcctggtacccctcgaa 889
|||||||||||||||||| || | |||||| ||||||||||||||||||||| |||||
Sbjct: 1272 gcagtcgcggaagaactggcgctgcgcgtgcgggtacagcgtgtcctggtacccgtcgaa 1213
Query: 890 ccggcagttgtagaacaccgacttgtcgccctgcacgtgcatcgccaccgcctggtgccc 949
| ||| | ||||||||||| | |||||| |||| || | | ||||||||||||||
Sbjct: 1212 ctcgcactggtagaacaccgccatgtcgctctgcgcgcggagagccaccgcctggtggtt 1153
Query: 950 ctccggccccgccgtgttc 968
|||||||||||||||||||
Sbjct: 1152 ctccggccccgccgtgttc 1134
>gb|AACV01017055.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg017055,
whole genome shotgun sequence
Length = 2557
Score = 101 bits (51), Expect = 8e-019
Identities = 117/139 (84%)
Strand = Plus / Plus
Query: 830 gcagtcgcggaagaactgccggttggcgtgcacgtacagcgtgtcctggtacccctcgaa 889
|||||||||||||||||| || | |||||| ||||||||||||||||||||| |||||
Sbjct: 805 gcagtcgcggaagaactggcgctgcgcgtgcgggtacagcgtgtcctggtacccgtcgaa 864
Query: 890 ccggcagttgtagaacaccgacttgtcgccctgcacgtgcatcgccaccgcctggtgccc 949
| ||| | ||||||||||| | |||||| |||| || | | ||||||||||||||
Sbjct: 865 ctcgcactggtagaacaccgccatgtcgctctgcgcgcggagagccaccgcctggtggtt 924
Query: 950 ctccggccccgccgtgttc 968
|||||||||||||||||||
Sbjct: 925 ctccggccccgccgtgttc 943
>ref|XM_479611.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2119
Score = 101 bits (51), Expect = 8e-019
Identities = 117/139 (84%)
Strand = Plus / Minus
Query: 830 gcagtcgcggaagaactgccggttggcgtgcacgtacagcgtgtcctggtacccctcgaa 889
|||||||||||||||||| || | |||||| ||||||||||||||||||||| |||||
Sbjct: 1272 gcagtcgcggaagaactggcgctgcgcgtgcgggtacagcgtgtcctggtacccgtcgaa 1213
Query: 890 ccggcagttgtagaacaccgacttgtcgccctgcacgtgcatcgccaccgcctggtgccc 949
| ||| | ||||||||||| | |||||| |||| || | | ||||||||||||||
Sbjct: 1212 ctcgcactggtagaacaccgccatgtcgctctgcgcgcggagagccaccgcctggtggtt 1153
Query: 950 ctccggccccgccgtgttc 968
|||||||||||||||||||
Sbjct: 1152 ctccggccccgccgtgttc 1134
>dbj|AP004316.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
clone:P0597G07
Length = 152928
Score = 101 bits (51), Expect = 8e-019
Identities = 117/139 (84%)
Strand = Plus / Minus
Query: 830 gcagtcgcggaagaactgccggttggcgtgcacgtacagcgtgtcctggtacccctcgaa 889
|||||||||||||||||| || | |||||| ||||||||||||||||||||| |||||
Sbjct: 124425 gcagtcgcggaagaactggcgctgcgcgtgcgggtacagcgtgtcctggtacccgtcgaa 124366
Query: 890 ccggcagttgtagaacaccgacttgtcgccctgcacgtgcatcgccaccgcctggtgccc 949
| ||| | ||||||||||| | |||||| |||| || | | ||||||||||||||
Sbjct: 124365 ctcgcactggtagaacaccgccatgtcgctctgcgcgcggagagccaccgcctggtggtt 124306
Query: 950 ctccggccccgccgtgttc 968
|||||||||||||||||||
Sbjct: 124305 ctccggccccgccgtgttc 124287
>ref|NT_079899.2| Oryza sativa (japonica cultivar-group)
Length = 17249721
Score = 101 bits (51), Expect = 8e-019
Identities = 117/139 (84%)
Strand = Plus / Minus
Query: 830 gcagtcgcggaagaactgccggttggcgtgcacgtacagcgtgtcctggtacccctcgaa 889
|||||||||||||||||| || | |||||| ||||||||||||||||||||| |||||
Sbjct: 16948741 gcagtcgcggaagaactggcgctgcgcgtgcgggtacagcgtgtcctggtacccgtcgaa 16948682
Query: 890 ccggcagttgtagaacaccgacttgtcgccctgcacgtgcatcgccaccgcctggtgccc 949
| ||| | ||||||||||| | |||||| |||| || | | ||||||||||||||
Sbjct: 16948681 ctcgcactggtagaacaccgccatgtcgctctgcgcgcggagagccaccgcctggtggtt 16948622
Query: 950 ctccggccccgccgtgttc 968
|||||||||||||||||||
Sbjct: 16948621 ctccggccccgccgtgttc 16948603
Score = 54.0 bits (27), Expect = 2e-004
Identities = 120/151 (79%)
Strand = Plus / Plus
Query: 797 gccgaagatgaagtccacggtgcccagcacctcgcagtcgcggaagaactgccggttggc 856
|||||||||||||||||| ||||| | |||||||||||| ||||||| || |
Sbjct: 16119217 gccgaagatgaagtccaccgtgccgtagatgtcgcagtcgcggtagaactggcgaagcga 16119276
Query: 857 gtgcacgtacagcgtgtcctggtacccctcgaaccggcagttgtagaacaccgacttgtc 916
|||| ||||||||||||||||||| ||| |||| | ||| ||||||| ||||| |||
Sbjct: 16119277 gtgcgcgtacagcgtgtcctggtagcccgcgaagctgcaccggtagaacgccgacaggtc 16119336
Query: 917 gccctgcacgtgcatcgccaccgcctggtgc 947
| | | ||| ||| ||||||||||||||||
Sbjct: 16119337 ggcgttcacccgcagcgccaccgcctggtgc 16119367
>gb|CH401226.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000063 genomic
scaffold, whole genome shotgun sequence
Length = 15204090
Score = 101 bits (51), Expect = 8e-019
Identities = 117/139 (84%)
Strand = Plus / Minus
Query: 830 gcagtcgcggaagaactgccggttggcgtgcacgtacagcgtgtcctggtacccctcgaa 889
|||||||||||||||||| || | |||||| ||||||||||||||||||||| |||||
Sbjct: 14934302 gcagtcgcggaagaactggcgctgcgcgtgcgggtacagcgtgtcctggtacccgtcgaa 14934243
Query: 890 ccggcagttgtagaacaccgacttgtcgccctgcacgtgcatcgccaccgcctggtgccc 949
| ||| | ||||||||||| | |||||| |||| || | | ||||||||||||||
Sbjct: 14934242 ctcgcactggtagaacaccgccatgtcgctctgcgcgcggagagccaccgcctggtggtt 14934183
Query: 950 ctccggccccgccgtgttc 968
|||||||||||||||||||
Sbjct: 14934182 ctccggccccgccgtgttc 14934164
Score = 54.0 bits (27), Expect = 2e-004
Identities = 120/151 (79%)
Strand = Plus / Plus
Query: 797 gccgaagatgaagtccacggtgcccagcacctcgcagtcgcggaagaactgccggttggc 856
|||||||||||||||||| ||||| | |||||||||||| ||||||| || |
Sbjct: 14081198 gccgaagatgaagtccaccgtgccgtagatgtcgcagtcgcggtagaactggcgaagcga 14081257
Query: 857 gtgcacgtacagcgtgtcctggtacccctcgaaccggcagttgtagaacaccgacttgtc 916
|||| ||||||||||||||||||| ||| |||| | ||| ||||||| ||||| |||
Sbjct: 14081258 gtgcgcgtacagcgtgtcctggtagcccgcgaagctgcaccggtagaacgccgacaggtc 14081317
Query: 917 gccctgcacgtgcatcgccaccgcctggtgc 947
| | | ||| ||| ||||||||||||||||
Sbjct: 14081318 ggcgttcacccgcagcgccaccgcctggtgc 14081348
>gb|CM000144.1| Oryza sativa (japonica cultivar-group) chromosome 7, whole genome shotgun
sequence
Length = 28626509
Score = 101 bits (51), Expect = 8e-019
Identities = 117/139 (84%)
Strand = Plus / Minus
Query: 830 gcagtcgcggaagaactgccggttggcgtgcacgtacagcgtgtcctggtacccctcgaa 889
|||||||||||||||||| || | |||||| ||||||||||||||||||||| |||||
Sbjct: 28333741 gcagtcgcggaagaactggcgctgcgcgtgcgggtacagcgtgtcctggtacccgtcgaa 28333682
Query: 890 ccggcagttgtagaacaccgacttgtcgccctgcacgtgcatcgccaccgcctggtgccc 949
| ||| | ||||||||||| | |||||| |||| || | | ||||||||||||||
Sbjct: 28333681 ctcgcactggtagaacaccgccatgtcgctctgcgcgcggagagccaccgcctggtggtt 28333622
Query: 950 ctccggccccgccgtgttc 968
|||||||||||||||||||
Sbjct: 28333621 ctccggccccgccgtgttc 28333603
Score = 54.0 bits (27), Expect = 2e-004
Identities = 120/151 (79%)
Strand = Plus / Plus
Query: 797 gccgaagatgaagtccacggtgcccagcacctcgcagtcgcggaagaactgccggttggc 856
|||||||||||||||||| ||||| | |||||||||||| ||||||| || |
Sbjct: 27480637 gccgaagatgaagtccaccgtgccgtagatgtcgcagtcgcggtagaactggcgaagcga 27480696
Query: 857 gtgcacgtacagcgtgtcctggtacccctcgaaccggcagttgtagaacaccgacttgtc 916
|||| ||||||||||||||||||| ||| |||| | ||| ||||||| ||||| |||
Sbjct: 27480697 gtgcgcgtacagcgtgtcctggtagcccgcgaagctgcaccggtagaacgccgacaggtc 27480756
Query: 917 gccctgcacgtgcatcgccaccgcctggtgc 947
| | | ||| ||| ||||||||||||||||
Sbjct: 27480757 ggcgttcacccgcagcgccaccgcctggtgc 27480787
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
sequence
Length = 29644043
Score = 101 bits (51), Expect = 8e-019
Identities = 117/139 (84%)
Strand = Plus / Minus
Query: 830 gcagtcgcggaagaactgccggttggcgtgcacgtacagcgtgtcctggtacccctcgaa 889
|||||||||||||||||| || | |||||| ||||||||||||||||||||| |||||
Sbjct: 29335736 gcagtcgcggaagaactggcgctgcgcgtgcgggtacagcgtgtcctggtacccgtcgaa 29335677
Query: 890 ccggcagttgtagaacaccgacttgtcgccctgcacgtgcatcgccaccgcctggtgccc 949
| ||| | ||||||||||| | |||||| |||| || | | ||||||||||||||
Sbjct: 29335676 ctcgcactggtagaacaccgccatgtcgctctgcgcgcggagagccaccgcctggtggtt 29335617
Query: 950 ctccggccccgccgtgttc 968
|||||||||||||||||||
Sbjct: 29335616 ctccggccccgccgtgttc 29335598
Score = 54.0 bits (27), Expect = 2e-004
Identities = 120/151 (79%)
Strand = Plus / Plus
Query: 797 gccgaagatgaagtccacggtgcccagcacctcgcagtcgcggaagaactgccggttggc 856
|||||||||||||||||| ||||| | |||||||||||| ||||||| || |
Sbjct: 28506212 gccgaagatgaagtccaccgtgccgtagatgtcgcagtcgcggtagaactggcgaagcga 28506271
Query: 857 gtgcacgtacagcgtgtcctggtacccctcgaaccggcagttgtagaacaccgacttgtc 916
|||| ||||||||||||||||||| ||| |||| | ||| ||||||| ||||| |||
Sbjct: 28506272 gtgcgcgtacagcgtgtcctggtagcccgcgaagctgcaccggtagaacgccgacaggtc 28506331
Query: 917 gccctgcacgtgcatcgccaccgcctggtgc 947
| | | ||| ||| ||||||||||||||||
Sbjct: 28506332 ggcgttcacccgcagcgccaccgcctggtgc 28506362
>gb|C98771.1|C98771 C98771 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E3080_1A, mRNA sequence
Length = 461
Score = 95.6 bits (48), Expect = 5e-017
Identities = 117/140 (83%)
Strand = Plus / Minus
Query: 765 atgaggcagttctggaacagcgccgccgagttgccgaagatgaagtccacggtgcccagc 824
||||||||||||||||| | || || |||||||||||||||||||| | ||||||
Sbjct: 222 atgaggcagttctggaagacggcggcggagttgccgaagatgaagtcgatggtgccggag 163
Query: 825 acctcgcagtcgcggaagaactgccggttggcgtgcacgtacagcgtgtcctggtacccc 884
| |||||| |||||||||||| || ||||||||||||||| ||||||||| || |
Sbjct: 162 atgacgcagttgcggaagaactggcgccgggcgtgcacgtacagggtgtcctggaacgcg 103
Query: 885 tcgaaccggcagttgtagaa 904
||||||||||||||||||||
Sbjct: 102 tcgaaccggcagttgtagaa 83
>dbj|AK072369.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023064J16, full
insert sequence
Length = 2346
Score = 95.6 bits (48), Expect = 5e-017
Identities = 126/152 (82%)
Strand = Plus / Minus
Query: 829 cgcagtcgcggaagaactgccggttggcgtgcacgtacagcgtgtcctggtacccctcga 888
|||||| |||| |||||||| |||| |||| ||||||||||||||||| |||| || |
Sbjct: 1475 cgcagttgcggtagaactgcgccttggagtgcgcgtacagcgtgtcctggaacccgtcca 1416
Query: 889 accggcagttgtagaacaccgacttgtcgccctgcacgtgcatcgccaccgcctggtgcc 948
|| ||||||| ||||||||||||||| |||||| ||| ||||||||||||||||
Sbjct: 1415 tccagcagttgaggaacaccgacttgtccgactgcaccagcagcgccaccgcctggtgct 1356
Query: 949 cctccggccccgccgtgttcacgaaccccatc 980
| ||| ||||||||||||| ||||||||||
Sbjct: 1355 tcgccgcccccgccgtgttctggaaccccatc 1324
Score = 67.9 bits (34), Expect = 1e-008
Identities = 34/34 (100%)
Strand = Plus / Minus
Query: 475 tgttggcgtactcggcgtagtagagcgtcttgag 508
||||||||||||||||||||||||||||||||||
Sbjct: 1832 tgttggcgtactcggcgtagtagagcgtcttgag 1799
>dbj|AK121454.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023142P03, full
insert sequence
Length = 2002
Score = 95.6 bits (48), Expect = 5e-017
Identities = 117/140 (83%)
Strand = Plus / Minus
Query: 765 atgaggcagttctggaacagcgccgccgagttgccgaagatgaagtccacggtgcccagc 824
||||||||||||||||| | || || |||||||||||||||||||| | ||||||
Sbjct: 1276 atgaggcagttctggaagacggcggcggagttgccgaagatgaagtcgatggtgccggag 1217
Query: 825 acctcgcagtcgcggaagaactgccggttggcgtgcacgtacagcgtgtcctggtacccc 884
| |||||| |||||||||||| || ||||||||||||||| ||||||||| || |
Sbjct: 1216 atgacgcagttgcggaagaactggcgccgggcgtgcacgtacagggtgtcctggaacgcg 1157
Query: 885 tcgaaccggcagttgtagaa 904
||||||||||||||||||||
Sbjct: 1156 tcgaaccggcagttgtagaa 1137
Score = 71.9 bits (36), Expect = 7e-010
Identities = 63/72 (87%)
Strand = Plus / Minus
Query: 437 ccagttgaccctcttgctggtgccggcgcccgggccggtgttggcgtactcggcgtagta 496
||||||||| | |||||||||||||||||| |||||| |||| | |||||||||||||
Sbjct: 1604 ccagttgacgcgcttgctggtgccggcgccggggccgcggttgttgaactcggcgtagta 1545
Query: 497 gagcgtcttgag 508
|||||| |||||
Sbjct: 1544 gagcgtgttgag 1533
Score = 54.0 bits (27), Expect = 2e-004
Identities = 111/139 (79%)
Strand = Plus / Minus
Query: 590 gtactccttccacggccggccgaggtaggtggcgatctggaggcggtcggggaagagcgc 649
|||||||||||| || ||||||||||||| || ||||| || | ||| |||||||||
Sbjct: 1451 gtactccttccatgggcggccgaggtaggaggggatcttgaacctgtccgggaagagctt 1392
Query: 650 ctgctccggcacgatgcggcagccctggagcacgatgcccgtgggcatgttggggtccgt 709
||| || ||||||| ||||||| ||||| |||| ||| | |||||||||||| ||
Sbjct: 1391 ctggtcgggcacgaggcggcagttctggatgacgaggccggacttcatgttggggtcggt 1332
Query: 710 ccgcccttgcgccgtcacc 728
|| || ||||||||||||
Sbjct: 1331 gcggccgtgcgccgtcacc 1313
>dbj|AP005551.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
clone:OJ1081_G10
Length = 107955
Score = 95.6 bits (48), Expect = 5e-017
Identities = 126/152 (82%)
Strand = Plus / Plus
Query: 829 cgcagtcgcggaagaactgccggttggcgtgcacgtacagcgtgtcctggtacccctcga 888
|||||| |||| |||||||| |||| |||| ||||||||||||||||| |||| || |
Sbjct: 30977 cgcagttgcggtagaactgcgccttggagtgcgcgtacagcgtgtcctggaacccgtcca 31036
Query: 889 accggcagttgtagaacaccgacttgtcgccctgcacgtgcatcgccaccgcctggtgcc 948
|| ||||||| ||||||||||||||| |||||| ||| ||||||||||||||||
Sbjct: 31037 tccagcagttgaggaacaccgacttgtccgactgcaccagcagcgccaccgcctggtgct 31096
Query: 949 cctccggccccgccgtgttcacgaaccccatc 980
| ||| ||||||||||||| ||||||||||
Sbjct: 31097 tcgccgcccccgccgtgttctggaaccccatc 31128
Score = 67.9 bits (34), Expect = 1e-008
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 475 tgttggcgtactcggcgtagtagagcgtcttgag 508
||||||||||||||||||||||||||||||||||
Sbjct: 30620 tgttggcgtactcggcgtagtagagcgtcttgag 30653
>gb|AACV01009904.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg009904, whole
genome shotgun sequence
Length = 51710
Score = 95.6 bits (48), Expect = 5e-017
Identities = 117/140 (83%)
Strand = Plus / Plus
Query: 765 atgaggcagttctggaacagcgccgccgagttgccgaagatgaagtccacggtgcccagc 824
||||||||||||||||| | || || |||||||||||||||||||| | ||||||
Sbjct: 36954 atgaggcagttctggaagacggcggcggagttgccgaagatgaagtcgatggtgccggag 37013
Query: 825 acctcgcagtcgcggaagaactgccggttggcgtgcacgtacagcgtgtcctggtacccc 884
| |||||| |||||||||||| || ||||||||||||||| ||||||||| || |
Sbjct: 37014 atgacgcagttgcggaagaactggcgccgggcgtgcacgtacagggtgtcctggaacgcg 37073
Query: 885 tcgaaccggcagttgtagaa 904
||||||||||||||||||||
Sbjct: 37074 tcgaaccggcagttgtagaa 37093
Score = 71.9 bits (36), Expect = 7e-010
Identities = 63/72 (87%)
Strand = Plus / Plus
Query: 437 ccagttgaccctcttgctggtgccggcgcccgggccggtgttggcgtactcggcgtagta 496
||||||||| | |||||||||||||||||| |||||| |||| | |||||||||||||
Sbjct: 36626 ccagttgacgcgcttgctggtgccggcgccggggccgcggttgttgaactcggcgtagta 36685
Query: 497 gagcgtcttgag 508
|||||| |||||
Sbjct: 36686 gagcgtgttgag 36697
Score = 54.0 bits (27), Expect = 2e-004
Identities = 111/139 (79%)
Strand = Plus / Plus
Query: 590 gtactccttccacggccggccgaggtaggtggcgatctggaggcggtcggggaagagcgc 649
|||||||||||| || ||||||||||||| || ||||| || | ||| |||||||||
Sbjct: 36779 gtactccttccatgggcggccgaggtaggaggggatcttgaacctgtccgggaagagctt 36838
Query: 650 ctgctccggcacgatgcggcagccctggagcacgatgcccgtgggcatgttggggtccgt 709
||| || ||||||| ||||||| ||||| |||| ||| | |||||||||||| ||
Sbjct: 36839 ctggtcgggcacgaggcggcagttctggatgacgaggccggacttcatgttggggtcggt 36898
Query: 710 ccgcccttgcgccgtcacc 728
|| || ||||||||||||
Sbjct: 36899 gcggccgtgcgccgtcacc 36917
>gb|AACV01020049.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg020049, whole
genome shotgun sequence
Length = 25091
Score = 95.6 bits (48), Expect = 5e-017
Identities = 126/152 (82%)
Strand = Plus / Minus
Query: 829 cgcagtcgcggaagaactgccggttggcgtgcacgtacagcgtgtcctggtacccctcga 888
|||||| |||| |||||||| |||| |||| ||||||||||||||||| |||| || |
Sbjct: 9254 cgcagttgcggtagaactgcgccttggagtgcgcgtacagcgtgtcctggaacccgtcca 9195
Query: 889 accggcagttgtagaacaccgacttgtcgccctgcacgtgcatcgccaccgcctggtgcc 948
|| ||||||| ||||||||||||||| |||||| ||| ||||||||||||||||
Sbjct: 9194 tccagcagttgaggaacaccgacttgtccgactgcaccagcagcgccaccgcctggtgct 9135
Query: 949 cctccggccccgccgtgttcacgaaccccatc 980
| ||| ||||||||||||| ||||||||||
Sbjct: 9134 tcgccgcccccgccgtgttctggaaccccatc 9103
Score = 67.9 bits (34), Expect = 1e-008
Identities = 34/34 (100%)
Strand = Plus / Minus
Query: 475 tgttggcgtactcggcgtagtagagcgtcttgag 508
||||||||||||||||||||||||||||||||||
Sbjct: 9611 tgttggcgtactcggcgtagtagagcgtcttgag 9578
>ref|XM_472740.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1707
Score = 95.6 bits (48), Expect = 5e-017
Identities = 117/140 (83%)
Strand = Plus / Minus
Query: 765 atgaggcagttctggaacagcgccgccgagttgccgaagatgaagtccacggtgcccagc 824
||||||||||||||||| | || || |||||||||||||||||||| | ||||||
Sbjct: 1259 atgaggcagttctggaagacggcggcggagttgccgaagatgaagtcgatggtgccggag 1200
Query: 825 acctcgcagtcgcggaagaactgccggttggcgtgcacgtacagcgtgtcctggtacccc 884
| |||||| |||||||||||| || ||||||||||||||| ||||||||| || |
Sbjct: 1199 atgacgcagttgcggaagaactggcgccgggcgtgcacgtacagggtgtcctggaacgcg 1140
Query: 885 tcgaaccggcagttgtagaa 904
||||||||||||||||||||
Sbjct: 1139 tcgaaccggcagttgtagaa 1120
Score = 71.9 bits (36), Expect = 7e-010
Identities = 63/72 (87%)
Strand = Plus / Minus
Query: 437 ccagttgaccctcttgctggtgccggcgcccgggccggtgttggcgtactcggcgtagta 496
||||||||| | |||||||||||||||||| |||||| |||| | |||||||||||||
Sbjct: 1587 ccagttgacgcgcttgctggtgccggcgccggggccgcggttgttgaactcggcgtagta 1528
Query: 497 gagcgtcttgag 508
|||||| |||||
Sbjct: 1527 gagcgtgttgag 1516
Score = 54.0 bits (27), Expect = 2e-004
Identities = 111/139 (79%)
Strand = Plus / Minus
Query: 590 gtactccttccacggccggccgaggtaggtggcgatctggaggcggtcggggaagagcgc 649
|||||||||||| || ||||||||||||| || ||||| || | ||| |||||||||
Sbjct: 1434 gtactccttccatgggcggccgaggtaggaggggatcttgaacctgtccgggaagagctt 1375
Query: 650 ctgctccggcacgatgcggcagccctggagcacgatgcccgtgggcatgttggggtccgt 709
||| || ||||||| ||||||| ||||| |||| ||| | |||||||||||| ||
Sbjct: 1374 ctggtcgggcacgaggcggcagttctggatgacgaggccggacttcatgttggggtcggt 1315
Query: 710 ccgcccttgcgccgtcacc 728
|| || ||||||||||||
Sbjct: 1314 gcggccgtgcgccgtcacc 1296
>ref|NT_079863.2| Oryza sativa (japonica cultivar-group)
Length = 2656602
Score = 95.6 bits (48), Expect = 5e-017
Identities = 117/140 (83%)
Strand = Plus / Plus
Query: 765 atgaggcagttctggaacagcgccgccgagttgccgaagatgaagtccacggtgcccagc 824
||||||||||||||||| | || || |||||||||||||||||||| | ||||||
Sbjct: 489560 atgaggcagttctggaagacggcggcggagttgccgaagatgaagtcgatggtgccggag 489619
Query: 825 acctcgcagtcgcggaagaactgccggttggcgtgcacgtacagcgtgtcctggtacccc 884
| |||||| |||||||||||| || ||||||||||||||| ||||||||| || |
Sbjct: 489620 atgacgcagttgcggaagaactggcgccgggcgtgcacgtacagggtgtcctggaacgcg 489679
Query: 885 tcgaaccggcagttgtagaa 904
||||||||||||||||||||
Sbjct: 489680 tcgaaccggcagttgtagaa 489699
Score = 71.9 bits (36), Expect = 7e-010
Identities = 63/72 (87%)
Strand = Plus / Plus
Query: 437 ccagttgaccctcttgctggtgccggcgcccgggccggtgttggcgtactcggcgtagta 496
||||||||| | |||||||||||||||||| |||||| |||| | |||||||||||||
Sbjct: 489232 ccagttgacgcgcttgctggtgccggcgccggggccgcggttgttgaactcggcgtagta 489291
Query: 497 gagcgtcttgag 508
|||||| |||||
Sbjct: 489292 gagcgtgttgag 489303
Score = 54.0 bits (27), Expect = 2e-004
Identities = 111/139 (79%)
Strand = Plus / Plus
Query: 590 gtactccttccacggccggccgaggtaggtggcgatctggaggcggtcggggaagagcgc 649
|||||||||||| || ||||||||||||| || ||||| || | ||| |||||||||
Sbjct: 489385 gtactccttccatgggcggccgaggtaggaggggatcttgaacctgtccgggaagagctt 489444
Query: 650 ctgctccggcacgatgcggcagccctggagcacgatgcccgtgggcatgttggggtccgt 709
||| || ||||||| ||||||| ||||| |||| ||| | |||||||||||| ||
Sbjct: 489445 ctggtcgggcacgaggcggcagttctggatgacgaggccggacttcatgttggggtcggt 489504
Query: 710 ccgcccttgcgccgtcacc 728
|| || ||||||||||||
Sbjct: 489505 gcggccgtgcgccgtcacc 489523
>ref|NT_107084.1| Oryza sativa (japonica cultivar-group)
Length = 4175757
Score = 95.6 bits (48), Expect = 5e-017
Identities = 126/152 (82%)
Strand = Plus / Plus
Query: 829 cgcagtcgcggaagaactgccggttggcgtgcacgtacagcgtgtcctggtacccctcga 888
|||||| |||| |||||||| |||| |||| ||||||||||||||||| |||| || |
Sbjct: 1559654 cgcagttgcggtagaactgcgccttggagtgcgcgtacagcgtgtcctggaacccgtcca 1559713
Query: 889 accggcagttgtagaacaccgacttgtcgccctgcacgtgcatcgccaccgcctggtgcc 948
|| ||||||| ||||||||||||||| |||||| ||| ||||||||||||||||
Sbjct: 1559714 tccagcagttgaggaacaccgacttgtccgactgcaccagcagcgccaccgcctggtgct 1559773
Query: 949 cctccggccccgccgtgttcacgaaccccatc 980
| ||| ||||||||||||| ||||||||||
Sbjct: 1559774 tcgccgcccccgccgtgttctggaaccccatc 1559805
Score = 67.9 bits (34), Expect = 1e-008
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 475 tgttggcgtactcggcgtagtagagcgtcttgag 508
||||||||||||||||||||||||||||||||||
Sbjct: 1559297 tgttggcgtactcggcgtagtagagcgtcttgag 1559330
>gb|CH401242.1| Oryza sativa (japonica cultivar-group) chromosome 9 scaffold000079 genomic
scaffold, whole genome shotgun sequence
Length = 12069826
Score = 95.6 bits (48), Expect = 5e-017
Identities = 126/152 (82%)
Strand = Plus / Plus
Query: 829 cgcagtcgcggaagaactgccggttggcgtgcacgtacagcgtgtcctggtacccctcga 888
|||||| |||| |||||||| |||| |||| ||||||||||||||||| |||| || |
Sbjct: 5178820 cgcagttgcggtagaactgcgccttggagtgcgcgtacagcgtgtcctggaacccgtcca 5178879
Query: 889 accggcagttgtagaacaccgacttgtcgccctgcacgtgcatcgccaccgcctggtgcc 948
|| ||||||| ||||||||||||||| |||||| ||| ||||||||||||||||
Sbjct: 5178880 tccagcagttgaggaacaccgacttgtccgactgcaccagcagcgccaccgcctggtgct 5178939
Query: 949 cctccggccccgccgtgttcacgaaccccatc 980
| ||| ||||||||||||| ||||||||||
Sbjct: 5178940 tcgccgcccccgccgtgttctggaaccccatc 5178971
Score = 67.9 bits (34), Expect = 1e-008
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 475 tgttggcgtactcggcgtagtagagcgtcttgag 508
||||||||||||||||||||||||||||||||||
Sbjct: 5178463 tgttggcgtactcggcgtagtagagcgtcttgag 5178496
>gb|CM000146.1| Oryza sativa (japonica cultivar-group) chromosome 9, whole genome shotgun
sequence
Length = 21543637
Score = 95.6 bits (48), Expect = 5e-017
Identities = 126/152 (82%)
Strand = Plus / Plus
Query: 829 cgcagtcgcggaagaactgccggttggcgtgcacgtacagcgtgtcctggtacccctcga 888
|||||| |||| |||||||| |||| |||| ||||||||||||||||| |||| || |
Sbjct: 14652631 cgcagttgcggtagaactgcgccttggagtgcgcgtacagcgtgtcctggaacccgtcca 14652690
Query: 889 accggcagttgtagaacaccgacttgtcgccctgcacgtgcatcgccaccgcctggtgcc 948
|| ||||||| ||||||||||||||| |||||| ||| ||||||||||||||||
Sbjct: 14652691 tccagcagttgaggaacaccgacttgtccgactgcaccagcagcgccaccgcctggtgct 14652750
Query: 949 cctccggccccgccgtgttcacgaaccccatc 980
| ||| ||||||||||||| ||||||||||
Sbjct: 14652751 tcgccgcccccgccgtgttctggaaccccatc 14652782
Score = 67.9 bits (34), Expect = 1e-008
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 475 tgttggcgtactcggcgtagtagagcgtcttgag 508
||||||||||||||||||||||||||||||||||
Sbjct: 14652274 tgttggcgtactcggcgtagtagagcgtcttgag 14652307
>emb|AL606636.4|OSJN00075 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0036B21,
complete sequence
Length = 138969
Score = 95.6 bits (48), Expect = 5e-017
Identities = 117/140 (83%)
Strand = Plus / Plus
Query: 765 atgaggcagttctggaacagcgccgccgagttgccgaagatgaagtccacggtgcccagc 824
||||||||||||||||| | || || |||||||||||||||||||| | ||||||
Sbjct: 94582 atgaggcagttctggaagacggcggcggagttgccgaagatgaagtcgatggtgccggag 94641
Query: 825 acctcgcagtcgcggaagaactgccggttggcgtgcacgtacagcgtgtcctggtacccc 884
| |||||| |||||||||||| || ||||||||||||||| ||||||||| || |
Sbjct: 94642 atgacgcagttgcggaagaactggcgccgggcgtgcacgtacagggtgtcctggaacgcg 94701
Query: 885 tcgaaccggcagttgtagaa 904
||||||||||||||||||||
Sbjct: 94702 tcgaaccggcagttgtagaa 94721
Score = 71.9 bits (36), Expect = 7e-010
Identities = 63/72 (87%)
Strand = Plus / Plus
Query: 437 ccagttgaccctcttgctggtgccggcgcccgggccggtgttggcgtactcggcgtagta 496
||||||||| | |||||||||||||||||| |||||| |||| | |||||||||||||
Sbjct: 94254 ccagttgacgcgcttgctggtgccggcgccggggccgcggttgttgaactcggcgtagta 94313
Query: 497 gagcgtcttgag 508
|||||| |||||
Sbjct: 94314 gagcgtgttgag 94325
Score = 54.0 bits (27), Expect = 2e-004
Identities = 111/139 (79%)
Strand = Plus / Plus
Query: 590 gtactccttccacggccggccgaggtaggtggcgatctggaggcggtcggggaagagcgc 649
|||||||||||| || ||||||||||||| || ||||| || | ||| |||||||||
Sbjct: 94407 gtactccttccatgggcggccgaggtaggaggggatcttgaacctgtccgggaagagctt 94466
Query: 650 ctgctccggcacgatgcggcagccctggagcacgatgcccgtgggcatgttggggtccgt 709
||| || ||||||| ||||||| ||||| |||| ||| | |||||||||||| ||
Sbjct: 94467 ctggtcgggcacgaggcggcagttctggatgacgaggccggacttcatgttggggtcggt 94526
Query: 710 ccgcccttgcgccgtcacc 728
|| || ||||||||||||
Sbjct: 94527 gcggccgtgcgccgtcacc 94545
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
sequence
Length = 22696651
Score = 95.6 bits (48), Expect = 5e-017
Identities = 126/152 (82%)
Strand = Plus / Plus
Query: 829 cgcagtcgcggaagaactgccggttggcgtgcacgtacagcgtgtcctggtacccctcga 888
|||||| |||| |||||||| |||| |||| ||||||||||||||||| |||| || |
Sbjct: 15867851 cgcagttgcggtagaactgcgccttggagtgcgcgtacagcgtgtcctggaacccgtcca 15867910
Query: 889 accggcagttgtagaacaccgacttgtcgccctgcacgtgcatcgccaccgcctggtgcc 948
|| ||||||| ||||||||||||||| |||||| ||| ||||||||||||||||
Sbjct: 15867911 tccagcagttgaggaacaccgacttgtccgactgcaccagcagcgccaccgcctggtgct 15867970
Query: 949 cctccggccccgccgtgttcacgaaccccatc 980
| ||| ||||||||||||| ||||||||||
Sbjct: 15867971 tcgccgcccccgccgtgttctggaaccccatc 15868002
Score = 67.9 bits (34), Expect = 1e-008
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 475 tgttggcgtactcggcgtagtagagcgtcttgag 508
||||||||||||||||||||||||||||||||||
Sbjct: 15867494 tgttggcgtactcggcgtagtagagcgtcttgag 15867527
>gb|AQ864513.1|AQ864513 nbeb0023M19f CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0023M19f, DNA sequence
Length = 740
Score = 83.8 bits (42), Expect = 2e-013
Identities = 102/118 (86%), Gaps = 3/118 (2%)
Strand = Plus / Minus
Query: 871 tgtcctggtacccctcgaaccggcagttgtagaacaccgacttgtcgccctgcacgtgca 930
|||||||| ||||||||||| | ||||| ||||||| ||| |||| || ||||||| |
Sbjct: 682 tgtcctgg-acccctcgaactg-cagttaaagaacac-gacatgtccccttgcacgtcaa 626
Query: 931 tcgccaccgcctggtgcccctccggccccgccgtgttcacgaaccccatcgacttgca 988
||||||||| |||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 625 gcgccaccgcgtggtgccctccgggccccgccgtgttcacgaaccccatcgacttgca 568
>dbj|AK072779.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023141O18, full
insert sequence
Length = 2268
Score = 77.8 bits (39), Expect = 1e-011
Identities = 147/183 (80%)
Strand = Plus / Minus
Query: 765 atgaggcagttctggaacagcgccgccgagttgccgaagatgaagtccacggtgcccagc 824
|||| |||||||||||||| |||||| | || ||||||||||||||| ||||||||
Sbjct: 1660 atgacgcagttctggaacaccgccgcggcgtcgccgaagatgaagtcgacggtgccggag 1601
Query: 825 acctcgcagtcgcggaagaactgccggttggcgtgcacgtacagcgtgtcctggtacccc 884
| |||||| |||| |||||||| |||| |||| |||| ||||||||||||| ||||
Sbjct: 1600 atgacgcagttgcggtagaactgcgccttggagtgcgcgtagagcgtgtcctggtgcccc 1541
Query: 885 tcgaaccggcagttgtagaacaccgacttgtcgccctgcacgtgcatcgccaccgcctgg 944
|| | ||||||||| ||| | |||||||| |||||| ||| |||||||||||||
Sbjct: 1540 tccatgcggcagttgaggaagatggacttgtccgactgcaccagcagcgccaccgcctgg 1481
Query: 945 tgc 947
|||
Sbjct: 1480 tgc 1478
>dbj|AP003798.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
clone:OJ1005_H01
Length = 128124
Score = 77.8 bits (39), Expect = 1e-011
Identities = 147/183 (80%)
Strand = Plus / Plus
Query: 765 atgaggcagttctggaacagcgccgccgagttgccgaagatgaagtccacggtgcccagc 824
|||| |||||||||||||| |||||| | || ||||||||||||||| ||||||||
Sbjct: 60727 atgacgcagttctggaacaccgccgcggcgtcgccgaagatgaagtcgacggtgccggag 60786
Query: 825 acctcgcagtcgcggaagaactgccggttggcgtgcacgtacagcgtgtcctggtacccc 884
| |||||| |||| |||||||| |||| |||| |||| ||||||||||||| ||||
Sbjct: 60787 atgacgcagttgcggtagaactgcgccttggagtgcgcgtagagcgtgtcctggtgcccc 60846
Query: 885 tcgaaccggcagttgtagaacaccgacttgtcgccctgcacgtgcatcgccaccgcctgg 944
|| | ||||||||| ||| | |||||||| |||||| ||| |||||||||||||
Sbjct: 60847 tccatgcggcagttgaggaagatggacttgtccgactgcaccagcagcgccaccgcctgg 60906
Query: 945 tgc 947
|||
Sbjct: 60907 tgc 60909
Score = 69.9 bits (35), Expect = 3e-009
Identities = 104/127 (81%)
Strand = Plus / Minus
Query: 770 gcagttctggaacagcgccgccgagttgccgaagatgaagtccacggtgcccagcacctc 829
|||||||||||||| || || | ||||||||||| |||||| |||||||| ||
Sbjct: 59390 gcagttctggaacacggcggcggcgttgccgaagacgaagtcgacggtgccggagacgcg 59331
Query: 830 gcagtcgcggaagaactgccggttggcgtgcacgtacagcgtgtcctggtacccctcgaa 889
|||||||||| ||||||| ||| | |||| ||||||||||||||||||| ||||||||
Sbjct: 59330 gcagtcgcggtagaactggcggagcgagtgcgcgtacagcgtgtcctggtagccctcgaa 59271
Query: 890 ccggcag 896
|| ||||
Sbjct: 59270 cccgcag 59264
Score = 46.1 bits (23), Expect = 0.040
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 590 gtactccttccacggccggccgaggta 616
||||| |||||||||||||||||||||
Sbjct: 59600 gtactgcttccacggccggccgaggta 59574
Score = 46.1 bits (23), Expect = 0.040
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 932 cgccaccgcctggtgcccctccggccccgccgtgttcacgaac 974
|||||||||||||||| | |||||||||||||||| |||||
Sbjct: 59228 cgccaccgcctggtgcttcgacggccccgccgtgttctcgaac 59186
>gb|AACV01018605.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg018605, whole
genome shotgun sequence
Length = 17328
Score = 77.8 bits (39), Expect = 1e-011
Identities = 147/183 (80%)
Strand = Plus / Minus
Query: 765 atgaggcagttctggaacagcgccgccgagttgccgaagatgaagtccacggtgcccagc 824
|||| |||||||||||||| |||||| | || ||||||||||||||| ||||||||
Sbjct: 15613 atgacgcagttctggaacaccgccgcggcgtcgccgaagatgaagtcgacggtgccggag 15554
Query: 825 acctcgcagtcgcggaagaactgccggttggcgtgcacgtacagcgtgtcctggtacccc 884
| |||||| |||| |||||||| |||| |||| |||| ||||||||||||| ||||
Sbjct: 15553 atgacgcagttgcggtagaactgcgccttggagtgcgcgtagagcgtgtcctggtgcccc 15494
Query: 885 tcgaaccggcagttgtagaacaccgacttgtcgccctgcacgtgcatcgccaccgcctgg 944
|| | ||||||||| ||| | |||||||| |||||| ||| |||||||||||||
Sbjct: 15493 tccatgcggcagttgaggaagatggacttgtccgactgcaccagcagcgccaccgcctgg 15434
Query: 945 tgc 947
|||
Sbjct: 15433 tgc 15431
Score = 61.9 bits (31), Expect = 7e-007
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 830 gcagtcgcggaagaactgccggttggcgtgcacgtacagcgtgtcctggtacccctcgaa 889
|||||||||| ||||||| ||| | |||| ||||||||||||||||||| ||||||||
Sbjct: 17012 gcagtcgcggtagaactggcggagcgagtgcgcgtacagcgtgtcctggtagccctcgaa 17071
Query: 890 ccggcag 896
|| ||||
Sbjct: 17072 cccgcag 17078
Score = 46.1 bits (23), Expect = 0.040
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 932 cgccaccgcctggtgcccctccggccccgccgtgttcacgaac 974
|||||||||||||||| | |||||||||||||||| |||||
Sbjct: 17114 cgccaccgcctggtgcttcgacggccccgccgtgttctcgaac 17156
Score = 46.1 bits (23), Expect = 0.040
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 590 gtactccttccacggccggccgaggta 616
||||| |||||||||||||||||||||
Sbjct: 16742 gtactgcttccacggccggccgaggta 16768
>ref|XM_482698.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2268
Score = 77.8 bits (39), Expect = 1e-011
Identities = 147/183 (80%)
Strand = Plus / Minus
Query: 765 atgaggcagttctggaacagcgccgccgagttgccgaagatgaagtccacggtgcccagc 824
|||| |||||||||||||| |||||| | || ||||||||||||||| ||||||||
Sbjct: 1660 atgacgcagttctggaacaccgccgcggcgtcgccgaagatgaagtcgacggtgccggag 1601
Query: 825 acctcgcagtcgcggaagaactgccggttggcgtgcacgtacagcgtgtcctggtacccc 884
| |||||| |||| |||||||| |||| |||| |||| ||||||||||||| ||||
Sbjct: 1600 atgacgcagttgcggtagaactgcgccttggagtgcgcgtagagcgtgtcctggtgcccc 1541
Query: 885 tcgaaccggcagttgtagaacaccgacttgtcgccctgcacgtgcatcgccaccgcctgg 944
|| | ||||||||| ||| | |||||||| |||||| ||| |||||||||||||
Sbjct: 1540 tccatgcggcagttgaggaagatggacttgtccgactgcaccagcagcgccaccgcctgg 1481
Query: 945 tgc 947
|||
Sbjct: 1480 tgc 1478
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 77.8 bits (39), Expect = 1e-011
Identities = 147/183 (80%)
Strand = Plus / Plus
Query: 765 atgaggcagttctggaacagcgccgccgagttgccgaagatgaagtccacggtgcccagc 824
|||| |||||||||||||| |||||| | || ||||||||||||||| ||||||||
Sbjct: 21736891 atgacgcagttctggaacaccgccgcggcgtcgccgaagatgaagtcgacggtgccggag 21736950
Query: 825 acctcgcagtcgcggaagaactgccggttggcgtgcacgtacagcgtgtcctggtacccc 884
| |||||| |||| |||||||| |||| |||| |||| ||||||||||||| ||||
Sbjct: 21736951 atgacgcagttgcggtagaactgcgccttggagtgcgcgtagagcgtgtcctggtgcccc 21737010
Query: 885 tcgaaccggcagttgtagaacaccgacttgtcgccctgcacgtgcatcgccaccgcctgg 944
|| | ||||||||| ||| | |||||||| |||||| ||| |||||||||||||
Sbjct: 21737011 tccatgcggcagttgaggaagatggacttgtccgactgcaccagcagcgccaccgcctgg 21737070
Query: 945 tgc 947
|||
Sbjct: 21737071 tgc 21737073
Score = 69.9 bits (35), Expect = 3e-009
Identities = 104/127 (81%)
Strand = Plus / Minus
Query: 770 gcagttctggaacagcgccgccgagttgccgaagatgaagtccacggtgcccagcacctc 829
|||||||||||||| || || | ||||||||||| |||||| |||||||| ||
Sbjct: 21735554 gcagttctggaacacggcggcggcgttgccgaagacgaagtcgacggtgccggagacgcg 21735495
Query: 830 gcagtcgcggaagaactgccggttggcgtgcacgtacagcgtgtcctggtacccctcgaa 889
|||||||||| ||||||| ||| | |||| ||||||||||||||||||| ||||||||
Sbjct: 21735494 gcagtcgcggtagaactggcggagcgagtgcgcgtacagcgtgtcctggtagccctcgaa 21735435
Query: 890 ccggcag 896
|| ||||
Sbjct: 21735434 cccgcag 21735428
Score = 46.1 bits (23), Expect = 0.040
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 590 gtactccttccacggccggccgaggta 616
||||| |||||||||||||||||||||
Sbjct: 21735764 gtactgcttccacggccggccgaggta 21735738
Score = 46.1 bits (23), Expect = 0.040
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 932 cgccaccgcctggtgcccctccggccccgccgtgttcacgaac 974
|||||||||||||||| | |||||||||||||||| |||||
Sbjct: 21735392 cgccaccgcctggtgcttcgacggccccgccgtgttctcgaac 21735350
>gb|CH401230.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000067 genomic
scaffold, whole genome shotgun sequence
Length = 19501165
Score = 77.8 bits (39), Expect = 1e-011
Identities = 147/183 (80%)
Strand = Plus / Plus
Query: 765 atgaggcagttctggaacagcgccgccgagttgccgaagatgaagtccacggtgcccagc 824
|||| |||||||||||||| |||||| | || ||||||||||||||| ||||||||
Sbjct: 13249212 atgacgcagttctggaacaccgccgcggcgtcgccgaagatgaagtcgacggtgccggag 13249271
Query: 825 acctcgcagtcgcggaagaactgccggttggcgtgcacgtacagcgtgtcctggtacccc 884
| |||||| |||| |||||||| |||| |||| |||| ||||||||||||| ||||
Sbjct: 13249272 atgacgcagttgcggtagaactgcgccttggagtgcgcgtagagcgtgtcctggtgcccc 13249331
Query: 885 tcgaaccggcagttgtagaacaccgacttgtcgccctgcacgtgcatcgccaccgcctgg 944
|| | ||||||||| ||| | |||||||| |||||| ||| |||||||||||||
Sbjct: 13249332 tccatgcggcagttgaggaagatggacttgtccgactgcaccagcagcgccaccgcctgg 13249391
Query: 945 tgc 947
|||
Sbjct: 13249392 tgc 13249394
Score = 69.9 bits (35), Expect = 3e-009
Identities = 104/127 (81%)
Strand = Plus / Minus
Query: 770 gcagttctggaacagcgccgccgagttgccgaagatgaagtccacggtgcccagcacctc 829
|||||||||||||| || || | ||||||||||| |||||| |||||||| ||
Sbjct: 13221300 gcagttctggaacacggcggcggcgttgccgaagacgaagtcgacggtgccggagacgcg 13221241
Query: 830 gcagtcgcggaagaactgccggttggcgtgcacgtacagcgtgtcctggtacccctcgaa 889
|||||||||| ||||||| ||| | |||| ||||||||||||||||||| ||||||||
Sbjct: 13221240 gcagtcgcggtagaactggcggagcgagtgcgcgtacagcgtgtcctggtagccctcgaa 13221181
Query: 890 ccggcag 896
|| ||||
Sbjct: 13221180 cccgcag 13221174
Score = 61.9 bits (31), Expect = 7e-007
Identities = 58/67 (86%)
Strand = Plus / Minus
Query: 830 gcagtcgcggaagaactgccggttggcgtgcacgtacagcgtgtcctggtacccctcgaa 889
|||||||||| ||||||| ||| | |||| ||||||||||||||||||| ||||||||
Sbjct: 13247813 gcagtcgcggtagaactggcggagcgagtgcgcgtacagcgtgtcctggtagccctcgaa 13247754
Query: 890 ccggcag 896
|| ||||
Sbjct: 13247753 cccgcag 13247747
Score = 46.1 bits (23), Expect = 0.040
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 590 gtactccttccacggccggccgaggta 616
||||| |||||||||||||||||||||
Sbjct: 13248083 gtactgcttccacggccggccgaggta 13248057
Score = 46.1 bits (23), Expect = 0.040
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 932 cgccaccgcctggtgcccctccggccccgccgtgttcacgaac 974
|||||||||||||||| | |||||||||||||||| |||||
Sbjct: 13247711 cgccaccgcctggtgcttcgacggccccgccgtgttctcgaac 13247669
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 77.8 bits (39), Expect = 1e-011
Identities = 147/183 (80%)
Strand = Plus / Plus
Query: 765 atgaggcagttctggaacagcgccgccgagttgccgaagatgaagtccacggtgcccagc 824
|||| |||||||||||||| |||||| | || ||||||||||||||| ||||||||
Sbjct: 20851218 atgacgcagttctggaacaccgccgcggcgtcgccgaagatgaagtcgacggtgccggag 20851277
Query: 825 acctcgcagtcgcggaagaactgccggttggcgtgcacgtacagcgtgtcctggtacccc 884
| |||||| |||| |||||||| |||| |||| |||| ||||||||||||| ||||
Sbjct: 20851278 atgacgcagttgcggtagaactgcgccttggagtgcgcgtagagcgtgtcctggtgcccc 20851337
Query: 885 tcgaaccggcagttgtagaacaccgacttgtcgccctgcacgtgcatcgccaccgcctgg 944
|| | ||||||||| ||| | |||||||| |||||| ||| |||||||||||||
Sbjct: 20851338 tccatgcggcagttgaggaagatggacttgtccgactgcaccagcagcgccaccgcctgg 20851397
Query: 945 tgc 947
|||
Sbjct: 20851398 tgc 20851400
Score = 69.9 bits (35), Expect = 3e-009
Identities = 104/127 (81%)
Strand = Plus / Minus
Query: 770 gcagttctggaacagcgccgccgagttgccgaagatgaagtccacggtgcccagcacctc 829
|||||||||||||| || || | ||||||||||| |||||| |||||||| ||
Sbjct: 20823306 gcagttctggaacacggcggcggcgttgccgaagacgaagtcgacggtgccggagacgcg 20823247
Query: 830 gcagtcgcggaagaactgccggttggcgtgcacgtacagcgtgtcctggtacccctcgaa 889
|||||||||| ||||||| ||| | |||| ||||||||||||||||||| ||||||||
Sbjct: 20823246 gcagtcgcggtagaactggcggagcgagtgcgcgtacagcgtgtcctggtagccctcgaa 20823187
Query: 890 ccggcag 896
|| ||||
Sbjct: 20823186 cccgcag 20823180
Score = 61.9 bits (31), Expect = 7e-007
Identities = 58/67 (86%)
Strand = Plus / Minus
Query: 830 gcagtcgcggaagaactgccggttggcgtgcacgtacagcgtgtcctggtacccctcgaa 889
|||||||||| ||||||| ||| | |||| ||||||||||||||||||| ||||||||
Sbjct: 20849819 gcagtcgcggtagaactggcggagcgagtgcgcgtacagcgtgtcctggtagccctcgaa 20849760
Query: 890 ccggcag 896
|| ||||
Sbjct: 20849759 cccgcag 20849753
Score = 46.1 bits (23), Expect = 0.040
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 590 gtactccttccacggccggccgaggta 616
||||| |||||||||||||||||||||
Sbjct: 20850089 gtactgcttccacggccggccgaggta 20850063
Score = 46.1 bits (23), Expect = 0.040
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 932 cgccaccgcctggtgcccctccggccccgccgtgttcacgaac 974
|||||||||||||||| | |||||||||||||||| |||||
Sbjct: 20849717 cgccaccgcctggtgcttcgacggccccgccgtgttctcgaac 20849675
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 77.8 bits (39), Expect = 1e-011
Identities = 147/183 (80%)
Strand = Plus / Plus
Query: 765 atgaggcagttctggaacagcgccgccgagttgccgaagatgaagtccacggtgcccagc 824
|||| |||||||||||||| |||||| | || ||||||||||||||| ||||||||
Sbjct: 21974978 atgacgcagttctggaacaccgccgcggcgtcgccgaagatgaagtcgacggtgccggag 21975037
Query: 825 acctcgcagtcgcggaagaactgccggttggcgtgcacgtacagcgtgtcctggtacccc 884
| |||||| |||| |||||||| |||| |||| |||| ||||||||||||| ||||
Sbjct: 21975038 atgacgcagttgcggtagaactgcgccttggagtgcgcgtagagcgtgtcctggtgcccc 21975097
Query: 885 tcgaaccggcagttgtagaacaccgacttgtcgccctgcacgtgcatcgccaccgcctgg 944
|| | ||||||||| ||| | |||||||| |||||| ||| |||||||||||||
Sbjct: 21975098 tccatgcggcagttgaggaagatggacttgtccgactgcaccagcagcgccaccgcctgg 21975157
Query: 945 tgc 947
|||
Sbjct: 21975158 tgc 21975160
Score = 69.9 bits (35), Expect = 3e-009
Identities = 104/127 (81%)
Strand = Plus / Minus
Query: 770 gcagttctggaacagcgccgccgagttgccgaagatgaagtccacggtgcccagcacctc 829
|||||||||||||| || || | ||||||||||| |||||| |||||||| ||
Sbjct: 21973641 gcagttctggaacacggcggcggcgttgccgaagacgaagtcgacggtgccggagacgcg 21973582
Query: 830 gcagtcgcggaagaactgccggttggcgtgcacgtacagcgtgtcctggtacccctcgaa 889
|||||||||| ||||||| ||| | |||| ||||||||||||||||||| ||||||||
Sbjct: 21973581 gcagtcgcggtagaactggcggagcgagtgcgcgtacagcgtgtcctggtagccctcgaa 21973522
Query: 890 ccggcag 896
|| ||||
Sbjct: 21973521 cccgcag 21973515
Score = 46.1 bits (23), Expect = 0.040
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 590 gtactccttccacggccggccgaggta 616
||||| |||||||||||||||||||||
Sbjct: 21973851 gtactgcttccacggccggccgaggta 21973825
Score = 46.1 bits (23), Expect = 0.040
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 932 cgccaccgcctggtgcccctccggccccgccgtgttcacgaac 974
|||||||||||||||| | |||||||||||||||| |||||
Sbjct: 21973479 cgccaccgcctggtgcttcgacggccccgccgtgttctcgaac 21973437
>dbj|AK070513.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023057H15, full
insert sequence
Length = 2099
Score = 73.8 bits (37), Expect = 2e-010
Identities = 97/117 (82%)
Strand = Plus / Minus
Query: 830 gcagtcgcggaagaactgccggttggcgtgcacgtacagcgtgtcctggtacccctcgaa 889
|||||||||| || |||||| | ||| ||| ||| ||||||||||||| ||| |||||
Sbjct: 1273 gcagtcgcggtagtactgcctgctggtgtgggtgtagagcgtgtcctggtgcccgtcgaa 1214
Query: 890 ccggcagttgtagaacaccgacttgtcgccctgcacgtgcatcgccaccgcctggtg 946
| |||| | ||||||| |||||| ||||| ||||||| | | |||||||||||||||
Sbjct: 1213 ctggcactcgtagaacgccgactggtcgctctgcacgcggagcgccaccgcctggtg 1157
Score = 44.1 bits (22), Expect = 0.16
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 581 cgtcctcgcgtactccttccacggccggccgagg 614
||||| || ||||||||||||||| |||||||||
Sbjct: 1522 cgtccgcgagtactccttccacgggcggccgagg 1489
>gb|AC118668.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
OSJNBa0036G02, from chromosome 3, complete sequence
Length = 153308
Score = 73.8 bits (37), Expect = 2e-010
Identities = 97/117 (82%)
Strand = Plus / Plus
Query: 830 gcagtcgcggaagaactgccggttggcgtgcacgtacagcgtgtcctggtacccctcgaa 889
|||||||||| || |||||| | ||| ||| ||| ||||||||||||| ||| |||||
Sbjct: 93334 gcagtcgcggtagtactgcctgctggtgtgggtgtagagcgtgtcctggtgcccgtcgaa 93393
Query: 890 ccggcagttgtagaacaccgacttgtcgccctgcacgtgcatcgccaccgcctggtg 946
| |||| | ||||||| |||||| ||||| ||||||| | | |||||||||||||||
Sbjct: 93394 ctggcactcgtagaacgccgactggtcgctctgcacgcggagcgccaccgcctggtg 93450
Score = 44.1 bits (22), Expect = 0.16
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 581 cgtcctcgcgtactccttccacggccggccgagg 614
||||| || ||||||||||||||| |||||||||
Sbjct: 93085 cgtccgcgagtactccttccacgggcggccgagg 93118
>gb|AACV01000523.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg000523, whole
genome shotgun sequence
Length = 18295
Score = 73.8 bits (37), Expect = 2e-010
Identities = 52/57 (91%)
Strand = Plus / Plus
Query: 828 tcgcagtcgcggaagaactgccggttggcgtgcacgtacagcgtgtcctggtacccc 884
|||||||||||| |||||||||| | |||||| |||||||||||||||||||||||
Sbjct: 17188 tcgcagtcgcggtagaactgccgctgcgcgtgcgcgtacagcgtgtcctggtacccc 17244
>gb|AACV01006428.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006428, whole
genome shotgun sequence
Length = 19243
Score = 73.8 bits (37), Expect = 2e-010
Identities = 97/117 (82%)
Strand = Plus / Minus
Query: 830 gcagtcgcggaagaactgccggttggcgtgcacgtacagcgtgtcctggtacccctcgaa 889
|||||||||| || |||||| | ||| ||| ||| ||||||||||||| ||| |||||
Sbjct: 3733 gcagtcgcggtagtactgcctgctggtgtgggtgtagagcgtgtcctggtgcccgtcgaa 3674
Query: 890 ccggcagttgtagaacaccgacttgtcgccctgcacgtgcatcgccaccgcctggtg 946
| |||| | ||||||| |||||| ||||| ||||||| | | |||||||||||||||
Sbjct: 3673 ctggcactcgtagaacgccgactggtcgctctgcacgcggagcgccaccgcctggtg 3617
Score = 44.1 bits (22), Expect = 0.16
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 581 cgtcctcgcgtactccttccacggccggccgagg 614
||||| || ||||||||||||||| |||||||||
Sbjct: 3982 cgtccgcgagtactccttccacgggcggccgagg 3949
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 73.8 bits (37), Expect = 2e-010
Identities = 52/57 (91%)
Strand = Plus / Minus
Query: 828 tcgcagtcgcggaagaactgccggttggcgtgcacgtacagcgtgtcctggtacccc 884
|||||||||||| |||||||||| | |||||| |||||||||||||||||||||||
Sbjct: 7427588 tcgcagtcgcggtagaactgccgctgcgcgtgcgcgtacagcgtgtcctggtacccc 7427532
Score = 58.0 bits (29), Expect = 1e-005
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 932 cgccaccgcctggtgcccctccggccccgccgtgttc 968
|||||||||||||||| || |||||||||||||||||
Sbjct: 8445143 cgccaccgcctggtgcgccgccggccccgccgtgttc 8445179
Score = 56.0 bits (28), Expect = 4e-005
Identities = 67/80 (83%)
Strand = Plus / Plus
Query: 423 acgtggtagcctggccagttgaccctcttgctggtgccggcgcccgggccggtgttggcg 482
|||||||| || |||||| | |||||| |||||||| | || || | ||||| |||| |
Sbjct: 11696317 acgtggtaccccggccaggtcaccctcctgctggtgtccgccccggcgccggagttgttg 11696376
Query: 483 tactcggcgtagtagagcgt 502
||||||||||||||||||||
Sbjct: 11696377 tactcggcgtagtagagcgt 11696396
Score = 54.0 bits (27), Expect = 2e-004
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 841 agaactgccggttggcgtgcacgtacagcgtgtcctggt 879
|||||||||| |||||||| ||||||||||||||||||
Sbjct: 38281561 agaactgccgcatggcgtgcgcgtacagcgtgtcctggt 38281599
Score = 54.0 bits (27), Expect = 2e-004
Identities = 78/95 (82%)
Strand = Plus / Plus
Query: 794 gttgccgaagatgaagtccacggtgcccagcacctcgcagtcgcggaagaactgccggtt 853
|||||||||||||||||| |||||||| || |||||||||| ||||||| |||
Sbjct: 8445005 gttgccgaagatgaagtcgacggtgccggagacgcggcagtcgcggtagaactggcggag 8445064
Query: 854 ggcgtgcacgtacagcgtgtcctggtacccctcga 888
|| |||| |||| ||||||||||||| |||||||
Sbjct: 8445065 ggagtgcgcgtagagcgtgtcctggtggccctcga 8445099
Score = 52.0 bits (26), Expect = 6e-004
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 828 tcgcagtcgcggaagaactgccggttggcgtgcacgtacagcgtgtcctggtacccctcg 887
|||||| ||||| ||||||||||| | |||| ||||||||||||||||||| |||||
Sbjct: 11696725 tcgcaggcgcggtagaactgccggagcgagtgcgtgtacagcgtgtcctggtacgcctcg 11696784
Query: 888 aa 889
||
Sbjct: 11696785 aa 11696786
Score = 50.1 bits (25), Expect = 0.003
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 578 caccgtcctcgcgtactccttccacggccggcc 610
|||||||| || |||||||||||||||||||||
Sbjct: 33533585 caccgtccgcgagtactccttccacggccggcc 33533553
Score = 48.1 bits (24), Expect = 0.010
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 789 gccgagttgccgaagatgaagtccacggtgcc 820
|||||||||||||||| |||||| ||||||||
Sbjct: 38281509 gccgagttgccgaagacgaagtcgacggtgcc 38281540
Score = 48.1 bits (24), Expect = 0.010
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 481 cgtactcggcgtagtagagcgtcttgag 508
|||||||| |||||||||||||||||||
Sbjct: 38281177 cgtactcgccgtagtagagcgtcttgag 38281204
>ref|NM_188648.1| Oryza sativa (japonica cultivar-group), Ozsa8251 predicted mRNA
Length = 1866
Score = 73.8 bits (37), Expect = 2e-010
Identities = 52/57 (91%)
Strand = Plus / Minus
Query: 828 tcgcagtcgcggaagaactgccggttggcgtgcacgtacagcgtgtcctggtacccc 884
|||||||||||| |||||||||| | |||||| |||||||||||||||||||||||
Sbjct: 1337 tcgcagtcgcggtagaactgccgctgcgcgtgcgcgtacagcgtgtcctggtacccc 1281
>ref|NT_036312.3| Oryza sativa (japonica cultivar-group)
Length = 10050053
Score = 73.8 bits (37), Expect = 2e-010
Identities = 52/57 (91%)
Strand = Plus / Minus
Query: 828 tcgcagtcgcggaagaactgccggttggcgtgcacgtacagcgtgtcctggtacccc 884
|||||||||||| |||||||||| | |||||| |||||||||||||||||||||||
Sbjct: 7427428 tcgcagtcgcggtagaactgccgctgcgcgtgcgcgtacagcgtgtcctggtacccc 7427372
Score = 58.0 bits (29), Expect = 1e-005
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 932 cgccaccgcctggtgcccctccggccccgccgtgttc 968
|||||||||||||||| || |||||||||||||||||
Sbjct: 8444983 cgccaccgcctggtgcgccgccggccccgccgtgttc 8445019
Score = 54.0 bits (27), Expect = 2e-004
Identities = 78/95 (82%)
Strand = Plus / Plus
Query: 794 gttgccgaagatgaagtccacggtgcccagcacctcgcagtcgcggaagaactgccggtt 853
|||||||||||||||||| |||||||| || |||||||||| ||||||| |||
Sbjct: 8444845 gttgccgaagatgaagtcgacggtgccggagacgcggcagtcgcggtagaactggcggag 8444904
Query: 854 ggcgtgcacgtacagcgtgtcctggtacccctcga 888
|| |||| |||| ||||||||||||| |||||||
Sbjct: 8444905 ggagtgcgcgtagagcgtgtcctggtggccctcga 8444939
>ref|NT_107192.1| Oryza sativa (japonica cultivar-group)
Length = 4781381
Score = 73.8 bits (37), Expect = 2e-010
Identities = 97/117 (82%)
Strand = Plus / Plus
Query: 830 gcagtcgcggaagaactgccggttggcgtgcacgtacagcgtgtcctggtacccctcgaa 889
|||||||||| || |||||| | ||| ||| ||| ||||||||||||| ||| |||||
Sbjct: 1881438 gcagtcgcggtagtactgcctgctggtgtgggtgtagagcgtgtcctggtgcccgtcgaa 1881497
Query: 890 ccggcagttgtagaacaccgacttgtcgccctgcacgtgcatcgccaccgcctggtg 946
| |||| | ||||||| |||||| ||||| ||||||| | | |||||||||||||||
Sbjct: 1881498 ctggcactcgtagaacgccgactggtcgctctgcacgcggagcgccaccgcctggtg 1881554
Score = 44.1 bits (22), Expect = 0.16
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 581 cgtcctcgcgtactccttccacggccggccgagg 614
||||| || ||||||||||||||| |||||||||
Sbjct: 1881189 cgtccgcgagtactccttccacgggcggccgagg 1881222
>dbj|AP002481.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
clone:P0702F03
Length = 141111
Score = 73.8 bits (37), Expect = 2e-010
Identities = 52/57 (91%)
Strand = Plus / Minus
Query: 828 tcgcagtcgcggaagaactgccggttggcgtgcacgtacagcgtgtcctggtacccc 884
|||||||||||| |||||||||| | |||||| |||||||||||||||||||||||
Sbjct: 90834 tcgcagtcgcggtagaactgccgctgcgcgtgcgcgtacagcgtgtcctggtacccc 90778
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
scaffold, whole genome shotgun sequence
Length = 13858245
Score = 73.8 bits (37), Expect = 2e-010
Identities = 97/117 (82%)
Strand = Plus / Plus
Query: 830 gcagtcgcggaagaactgccggttggcgtgcacgtacagcgtgtcctggtacccctcgaa 889
|||||||||| || |||||| | ||| ||| ||| ||||||||||||| ||| |||||
Sbjct: 10613748 gcagtcgcggtagtactgcctgctggtgtgggtgtagagcgtgtcctggtgcccgtcgaa 10613807
Query: 890 ccggcagttgtagaacaccgacttgtcgccctgcacgtgcatcgccaccgcctggtg 946
| |||| | ||||||| |||||| ||||| ||||||| | | |||||||||||||||
Sbjct: 10613808 ctggcactcgtagaacgccgactggtcgctctgcacgcggagcgccaccgcctggtg 10613864
Score = 44.1 bits (22), Expect = 0.16
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 581 cgtcctcgcgtactccttccacggccggccgagg 614
||||| || ||||||||||||||| |||||||||
Sbjct: 10613499 cgtccgcgagtactccttccacgggcggccgagg 10613532
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,458,562
Number of Sequences: 438736
Number of extensions: 1458562
Number of successful extensions: 10011
Number of sequences better than 0.5: 126
Number of HSP's better than 0.5 without gapping: 142
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 8332
Number of HSP's gapped (non-prelim): 1638
length of query: 1085
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1064
effective length of database: 2,791,206,460
effective search space: 2969843673440
effective search space used: 2969843673440
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)