BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3871923.2.1
(1030 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK058387.1| Oryza sativa (japonica cultivar-group) cDNA... 692 0.0
dbj|AK064945.1| Oryza sativa (japonica cultivar-group) cDNA... 692 0.0
ref|XM_473255.1| Oryza sativa (japonica cultivar-group), p... 692 0.0
dbj|AK070486.1| Oryza sativa (japonica cultivar-group) cDNA... 676 0.0
gb|CB647021.1|CB647021 OSJNEb09M07.f OSJNEb Oryza sativa (j... 464 e-128
gb|CB649274.1|CB649274 OSJNEb13B21.r OSJNEb Oryza sativa (j... 412 e-112
gb|CB680841.1|CB680841 OSJNEf06E13.r OSJNEf Oryza sativa (j... 377 e-102
gb|CB655463.1|CB655463 OSJNEc08O20.r OSJNEc Oryza sativa (j... 369 2e-099
gb|CB649820.1|CB649820 OSJNEb13P14.r OSJNEb Oryza sativa (j... 367 8e-099
ref|NM_197150.1| Oryza sativa (japonica cultivar-group) put... 327 7e-087
gb|AU163548.1|AU163548 AU163548 Rice panicle at flowering s... 319 2e-084
dbj|AK072452.1| Oryza sativa (japonica cultivar-group) cDNA... 319 2e-084
gb|AACV01010158.1| Oryza sativa (japonica cultivar-group) c... 230 1e-057
ref|NT_079865.2| Oryza sativa (japonica cultivar-group) 230 1e-057
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 230 1e-057
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 230 1e-057
emb|AL662976.3|OSJN00177 Oryza sativa genomic DNA, chromoso... 230 1e-057
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 230 1e-057
gb|CB638880.1|CB638880 OSJNEa07M11.r OSJNEa Oryza sativa (j... 228 5e-057
gb|CB683273.1|CB683273 OSJNEf11H02.f OSJNEf Oryza sativa (j... 143 2e-031
gb|AQ290249.1|AQ290249 nbxb0036H13f CUGI Rice BAC Library O... 141 9e-031
gb|AQ573943.1|AQ573943 nbxb0083E17r CUGI Rice BAC Library O... 141 9e-031
gb|CB647445.1|CB647445 OSJNEb10G02.r OSJNEb Oryza sativa (j... 137 1e-029
gb|AC068950.11| Oryza sativa chromosome 10 BAC OSJNBa0041P0... 135 5e-029
gb|AACV01021859.1| Oryza sativa (japonica cultivar-group) c... 135 5e-029
ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chr... 135 5e-029
gb|CH401254.1| Oryza sativa (japonica cultivar-group) chrom... 135 5e-029
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 135 5e-029
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 135 5e-029
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 135 5e-029
gb|CB649273.1|CB649273 OSJNEb13B21.f OSJNEb Oryza sativa (j... 115 5e-023
gb|AQ867058.1|AQ867058 nbeb0029P19r CUGI Rice BAC Library (... 111 8e-022
dbj|AG208304.1| Oryza sativa (japonica cultivar-group) DNA,... 111 8e-022
dbj|AK101159.1| Oryza sativa (japonica cultivar-group) cDNA... 100 3e-018
dbj|AK107445.1| Oryza sativa (japonica cultivar-group) cDNA... 100 3e-018
gb|AZ046666.1|AZ046666 nbeb0095E03f CUGI Rice BAC Library (... 88 1e-014
dbj|AG022223.1| Oryza sativa (japonica cultivar-group) DNA,... 88 1e-014
dbj|AG205510.1| Oryza sativa (japonica cultivar-group) DNA,... 88 1e-014
gb|CB637206.1|CB637206 OSJNEa03I01.r OSJNEa Oryza sativa (j... 86 4e-014
gb|CB647022.1|CB647022 OSJNEb09M07.r OSJNEb Oryza sativa (j... 74 2e-010
dbj|AG020765.1| Oryza sativa (japonica cultivar-group) DNA,... 52 6e-004
dbj|AG024277.1| Oryza sativa (japonica cultivar-group) DNA,... 52 6e-004
gb|C72303.1|C72303 C72303 Rice panicle at flowering stage O... 48 0.010
emb|BX569687.1|CNS09SBM Oryza sativa (japonica cultivar-gro... 44 0.15
dbj|AK067639.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.15
dbj|AK104709.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.15
emb|AL844499.5|CNS08CAW Oryza sativa chromosome 12, . BAC O... 44 0.15
ref|NT_107147.1| Oryza sativa (japonica cultivar-group) 44 0.15
gb|AACV01024542.1| Oryza sativa (japonica cultivar-group) c... 44 0.15
gb|CH401274.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.15
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.15
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 44 0.15
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.15
>dbj|AK058387.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-015-A01, full
insert sequence
Length = 1535
Score = 692 bits (349), Expect = 0.0
Identities = 686/797 (86%), Gaps = 2/797 (0%)
Strand = Plus / Plus
Query: 5 gcaccctgaccaancgctccttcatcaacatgtcgcgggactttgg-tactactggctna 63
|||| |||||||| |||||||||||||||||||| ||||||| || || |||||||| |
Sbjct: 410 gcacactgaccaagcgctccttcatcaacatgtcaagggacttcgggtattactggctga 469
Query: 64 g-ctcntnatttacctcctcgtcaccgtttgcatcggcacgatctacctggacgtcggca 122
| ||| | || || |||||||| ||||| ||||| ||||| |||||| ||||||||||
Sbjct: 470 ggctcctcatctatctcctcgtgaccgtctgcattggcaccatctactatgacgtcggca 529
Query: 123 ccaaatacacatccatcctggccagggctgcctgctccgcgttcgtctttgggttcgtta 182
|||| ||||||||||||||||| ||||||||||| |||| |||||||| || ||||| |
Sbjct: 530 ccaagtacacatccatcctggctagggctgcctgtaccgcattcgtcttcggattcgtca 589
Query: 183 cgttcatgtccattggaggattcccttcgttcgttgaagaaatgaaggtcttccagcggg 242
| |||||||| |||||||| |||||||| || ||||||||||||||||| ||||| |||
Sbjct: 590 ctttcatgtcaattggagggttcccttcatttgttgaagaaatgaaggttttccaaaggg 649
Query: 243 aacggctgaacgggcactacggtgtcgcggcgtttgtcatcagcaacaccatctcagcca 302
| |||||||| ||||| |||||||||||||| ||||||||||||||||| ||||| ||
Sbjct: 650 agcggctgaatgggcattacggtgtcgcggcttttgtcatcagcaacacaatctcggcgc 709
Query: 303 cgccgttcctgattctgatatgcttcttgtcgggaaccatatgctacttcatggtgcgcc 362
||| ||| || | ||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 710 tgccattcttggtcctgatatgcttcttgtcagggaccatatgctacttcatggtgcgcc 769
Query: 363 tccatcctggcttcgagcactacatcttcttcgtcttgaacctgtacgccagcgttacgg 422
| || || || ||| ||||||||||||||||| | ||||| ||||||||||| || |
Sbjct: 770 ttcacccaggtttctcccactacatcttcttcgttctcaacctctacgccagcgtcactg 829
Query: 423 tggtcgagagcttgatgatggcgattgccagtgtcattccaaatttcctcatgggtatca 482
|||| ||||||||||||||||| ||||| |||||||| || |||||||||||||| ||||
Sbjct: 830 tggttgagagcttgatgatggccattgcaagtgtcatccctaatttcctcatggggatca 889
Query: 483 tcataggggccgggattcagggaatattcatgctggtctctggctacttcagacttccat 542
| ||||| || ||||||||||||||||| ||||| |||||||| ||||| |||||||| |
Sbjct: 890 ttataggagctgggattcagggaatatttatgcttgtctctggatactttagacttcctt 949
Query: 543 acgacatcccgaagcccttttggagataccccatgcagtacatcagcttccactactggg 602
||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 950 acgacattccgaagcctgtttggagataccccatgcagtacatcagcttccattactggg 1009
Query: 603 cactgcagggccagtgccagaacgacatgaagggcctcgcggtcgacaaccaggacccgg 662
| |||||||| || |||||||| |||||| | || |||| | ||||||||| |||| |
Sbjct: 1010 cgctgcaggggcaatgccagaatgacatggatggtctcgtatttgacaaccagtacccag 1069
Query: 663 accaacccaagatccccggggacttcatcctcaagtacatcttccagatcaacgtggacc 722
||||||| |||||||| || |||||||| || |||||||| ||||||||||||||| |||
Sbjct: 1070 accaaccgaagatccctggagacttcattctgaagtacatattccagatcaacgtgcacc 1129
Query: 723 gttccaagtggatcgacctgtcggtcattttcagcatgatcttcatctaccgcatcctct 782
| || |||||||| || || || || ||||||||||||||||||||||||||||| || |
Sbjct: 1130 ggtcaaagtggattgatctctcagtaattttcagcatgatcttcatctaccgcattctgt 1189
Query: 783 tcttcctcatgatcaag 799
|||||||||||||||||
Sbjct: 1190 tcttcctcatgatcaag 1206
>dbj|AK064945.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000P15, full
insert sequence
Length = 2455
Score = 692 bits (349), Expect = 0.0
Identities = 686/797 (86%), Gaps = 2/797 (0%)
Strand = Plus / Plus
Query: 5 gcaccctgaccaancgctccttcatcaacatgtcgcgggactttgg-tactactggctna 63
|||| |||||||| |||||||||||||||||||| ||||||| || || |||||||| |
Sbjct: 1332 gcacactgaccaagcgctccttcatcaacatgtcaagggacttcgggtattactggctga 1391
Query: 64 g-ctcntnatttacctcctcgtcaccgtttgcatcggcacgatctacctggacgtcggca 122
| ||| | || || |||||||| ||||| ||||| ||||| |||||| ||||||||||
Sbjct: 1392 ggctcctcatctatctcctcgtgaccgtctgcattggcaccatctactatgacgtcggca 1451
Query: 123 ccaaatacacatccatcctggccagggctgcctgctccgcgttcgtctttgggttcgtta 182
|||| ||||||||||||||||| ||||||||||| |||| |||||||| || ||||| |
Sbjct: 1452 ccaagtacacatccatcctggctagggctgcctgtaccgcattcgtcttcggattcgtca 1511
Query: 183 cgttcatgtccattggaggattcccttcgttcgttgaagaaatgaaggtcttccagcggg 242
| |||||||| |||||||| |||||||| || ||||||||||||||||| ||||| |||
Sbjct: 1512 ctttcatgtcaattggagggttcccttcatttgttgaagaaatgaaggttttccaaaggg 1571
Query: 243 aacggctgaacgggcactacggtgtcgcggcgtttgtcatcagcaacaccatctcagcca 302
| |||||||| ||||| |||||||||||||| ||||||||||||||||| ||||| ||
Sbjct: 1572 agcggctgaatgggcattacggtgtcgcggcttttgtcatcagcaacacaatctcggcgc 1631
Query: 303 cgccgttcctgattctgatatgcttcttgtcgggaaccatatgctacttcatggtgcgcc 362
||| ||| || | ||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 1632 tgccattcttggtcctgatatgcttcttgtcagggaccatatgctacttcatggtgcgcc 1691
Query: 363 tccatcctggcttcgagcactacatcttcttcgtcttgaacctgtacgccagcgttacgg 422
| || || || ||| ||||||||||||||||| | ||||| ||||||||||| || |
Sbjct: 1692 ttcacccaggtttctcccactacatcttcttcgttctcaacctctacgccagcgtcactg 1751
Query: 423 tggtcgagagcttgatgatggcgattgccagtgtcattccaaatttcctcatgggtatca 482
|||| ||||||||||||||||| ||||| |||||||| || |||||||||||||| ||||
Sbjct: 1752 tggttgagagcttgatgatggccattgcaagtgtcatccctaatttcctcatggggatca 1811
Query: 483 tcataggggccgggattcagggaatattcatgctggtctctggctacttcagacttccat 542
| ||||| || ||||||||||||||||| ||||| |||||||| ||||| |||||||| |
Sbjct: 1812 ttataggagctgggattcagggaatatttatgcttgtctctggatactttagacttcctt 1871
Query: 543 acgacatcccgaagcccttttggagataccccatgcagtacatcagcttccactactggg 602
||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1872 acgacattccgaagcctgtttggagataccccatgcagtacatcagcttccattactggg 1931
Query: 603 cactgcagggccagtgccagaacgacatgaagggcctcgcggtcgacaaccaggacccgg 662
| |||||||| || |||||||| |||||| | || |||| | ||||||||| |||| |
Sbjct: 1932 cgctgcaggggcaatgccagaatgacatggatggtctcgtatttgacaaccagtacccag 1991
Query: 663 accaacccaagatccccggggacttcatcctcaagtacatcttccagatcaacgtggacc 722
||||||| |||||||| || |||||||| || |||||||| ||||||||||||||| |||
Sbjct: 1992 accaaccgaagatccctggagacttcattctgaagtacatattccagatcaacgtgcacc 2051
Query: 723 gttccaagtggatcgacctgtcggtcattttcagcatgatcttcatctaccgcatcctct 782
| || |||||||| || || || || ||||||||||||||||||||||||||||| || |
Sbjct: 2052 ggtcaaagtggattgatctctcagtaattttcagcatgatcttcatctaccgcattctgt 2111
Query: 783 tcttcctcatgatcaag 799
|||||||||||||||||
Sbjct: 2112 tcttcctcatgatcaag 2128
>ref|XM_473255.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 2079
Score = 692 bits (349), Expect = 0.0
Identities = 686/797 (86%), Gaps = 2/797 (0%)
Strand = Plus / Plus
Query: 5 gcaccctgaccaancgctccttcatcaacatgtcgcgggactttgg-tactactggctna 63
|||| |||||||| |||||||||||||||||||| ||||||| || || |||||||| |
Sbjct: 1148 gcacactgaccaagcgctccttcatcaacatgtcaagggacttcgggtattactggctga 1207
Query: 64 g-ctcntnatttacctcctcgtcaccgtttgcatcggcacgatctacctggacgtcggca 122
| ||| | || || |||||||| ||||| ||||| ||||| |||||| ||||||||||
Sbjct: 1208 ggctcctcatctatctcctcgtgaccgtctgcattggcaccatctactatgacgtcggca 1267
Query: 123 ccaaatacacatccatcctggccagggctgcctgctccgcgttcgtctttgggttcgtta 182
|||| ||||||||||||||||| ||||||||||| |||| |||||||| || ||||| |
Sbjct: 1268 ccaagtacacatccatcctggctagggctgcctgtaccgcattcgtcttcggattcgtca 1327
Query: 183 cgttcatgtccattggaggattcccttcgttcgttgaagaaatgaaggtcttccagcggg 242
| |||||||| |||||||| |||||||| || ||||||||||||||||| ||||| |||
Sbjct: 1328 ctttcatgtcaattggagggttcccttcatttgttgaagaaatgaaggttttccaaaggg 1387
Query: 243 aacggctgaacgggcactacggtgtcgcggcgtttgtcatcagcaacaccatctcagcca 302
| |||||||| ||||| |||||||||||||| ||||||||||||||||| ||||| ||
Sbjct: 1388 agcggctgaatgggcattacggtgtcgcggcttttgtcatcagcaacacaatctcggcgc 1447
Query: 303 cgccgttcctgattctgatatgcttcttgtcgggaaccatatgctacttcatggtgcgcc 362
||| ||| || | ||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 1448 tgccattcttggtcctgatatgcttcttgtcagggaccatatgctacttcatggtgcgcc 1507
Query: 363 tccatcctggcttcgagcactacatcttcttcgtcttgaacctgtacgccagcgttacgg 422
| || || || ||| ||||||||||||||||| | ||||| ||||||||||| || |
Sbjct: 1508 ttcacccaggtttctcccactacatcttcttcgttctcaacctctacgccagcgtcactg 1567
Query: 423 tggtcgagagcttgatgatggcgattgccagtgtcattccaaatttcctcatgggtatca 482
|||| ||||||||||||||||| ||||| |||||||| || |||||||||||||| ||||
Sbjct: 1568 tggttgagagcttgatgatggccattgcaagtgtcatccctaatttcctcatggggatca 1627
Query: 483 tcataggggccgggattcagggaatattcatgctggtctctggctacttcagacttccat 542
| ||||| || ||||||||||||||||| ||||| |||||||| ||||| |||||||| |
Sbjct: 1628 ttataggagctgggattcagggaatatttatgcttgtctctggatactttagacttcctt 1687
Query: 543 acgacatcccgaagcccttttggagataccccatgcagtacatcagcttccactactggg 602
||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1688 acgacattccgaagcctgtttggagataccccatgcagtacatcagcttccattactggg 1747
Query: 603 cactgcagggccagtgccagaacgacatgaagggcctcgcggtcgacaaccaggacccgg 662
| |||||||| || |||||||| |||||| | || |||| | ||||||||| |||| |
Sbjct: 1748 cgctgcaggggcaatgccagaatgacatggatggtctcgtatttgacaaccagtacccag 1807
Query: 663 accaacccaagatccccggggacttcatcctcaagtacatcttccagatcaacgtggacc 722
||||||| |||||||| || |||||||| || |||||||| ||||||||||||||| |||
Sbjct: 1808 accaaccgaagatccctggagacttcattctgaagtacatattccagatcaacgtgcacc 1867
Query: 723 gttccaagtggatcgacctgtcggtcattttcagcatgatcttcatctaccgcatcctct 782
| || |||||||| || || || || ||||||||||||||||||||||||||||| || |
Sbjct: 1868 ggtcaaagtggattgatctctcagtaattttcagcatgatcttcatctaccgcattctgt 1927
Query: 783 tcttcctcatgatcaag 799
|||||||||||||||||
Sbjct: 1928 tcttcctcatgatcaag 1944
>dbj|AK070486.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023048A10, full
insert sequence
Length = 1770
Score = 676 bits (341), Expect = 0.0
Identities = 684/797 (85%), Gaps = 2/797 (0%)
Strand = Plus / Plus
Query: 5 gcaccctgaccaancgctccttcatcaacatgtcgcgggactttgg-tactactggctna 63
|||| |||||||| |||||||||||||||||||| ||||||| || || |||||||| |
Sbjct: 714 gcacactgaccaagcgctccttcatcaacatgtcaagggacttcgggtattactggctga 773
Query: 64 g-ctcntnatttacctcctcgtcaccgtttgcatcggcacgatctacctggacgtcggca 122
| ||| | || || |||||||| ||||| ||||| ||||| |||||| ||||||||||
Sbjct: 774 ggctcctcatctatctcctcgtgaccgtctgcattggcaccatctactatgacgtcggca 833
Query: 123 ccaaatacacatccatcctggccagggctgcctgctccgcgttcgtctttgggttcgtta 182
|||| ||||||||||||||||| ||||||||||| |||| |||||||| || ||||| |
Sbjct: 834 ccaagtacacatccatcctggctagggctgcctgtaccgcattcgtcttcggattcgtca 893
Query: 183 cgttcatgtccattggaggattcccttcgttcgttgaagaaatgaaggtcttccagcggg 242
| |||||||| |||||||| |||||||| | ||||||||||||||||| ||||| |||
Sbjct: 894 ctttcatgtcaattggagggttcccttcatctgttgaagaaatgaaggttttccaaaggg 953
Query: 243 aacggctgaacgggcactacggtgtcgcggcgtttgtcatcagcaacaccatctcagcca 302
| |||||||| ||||| |||||||||||||| ||||||||||||||||| ||||| ||
Sbjct: 954 agcggctgaatgggcattacggtgtcgcggcttttgtcatcagcaacacaatctcggcgc 1013
Query: 303 cgccgttcctgattctgatatgcttcttgtcgggaaccatatgctacttcatggtgcgcc 362
||| ||| || | ||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 1014 tgccattcttggtcctgatatgcttcttgtcagggaccatatgctacttcatggtgcgcc 1073
Query: 363 tccatcctggcttcgagcactacatcttcttcgtcttgaacctgtacgccagcgttacgg 422
| || || || ||| ||||||||||||||||| | |||| ||||||||||| || |
Sbjct: 1074 ttcacccaggtttctcccactacatcttcttcgttctcaacccctacgccagcgtcactg 1133
Query: 423 tggtcgagagcttgatgatggcgattgccagtgtcattccaaatttcctcatgggtatca 482
|||| ||||||||||||||||| ||||| |||||||| || |||||||||||||| ||||
Sbjct: 1134 tggttgagagcttgatgatggccattgcaagtgtcatccctaatttcctcatggggatca 1193
Query: 483 tcataggggccgggattcagggaatattcatgctggtctctggctacttcagacttccat 542
| ||||| || ||||||||||||||||| ||||| |||||||| ||||| |||||||| |
Sbjct: 1194 ttataggagctgggattcagggaatatttatgcttgtctctggatactttagacttcctt 1253
Query: 543 acgacatcccgaagcccttttggagataccccatgcagtacatcagcttccactactggg 602
||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1254 acgacattccgaagcctgtttggagataccccatgcagtacatcagcttccattactggg 1313
Query: 603 cactgcagggccagtgccagaacgacatgaagggcctcgcggtcgacaaccaggacccgg 662
| |||||||| || |||||||| |||||| | || |||| | ||||||||| |||| |
Sbjct: 1314 cgctgcaggggcaatgccagaatgacatggatggtctcgtatttgacaaccagtacccag 1373
Query: 663 accaacccaagatccccggggacttcatcctcaagtacatcttccagatcaacgtggacc 722
||||||| |||||||| || |||||||| || |||||||| ||||||||||||||| |||
Sbjct: 1374 accaaccgaagatccctggagacttcattctgaagtacatattccagatcaacgtgcacc 1433
Query: 723 gttccaagtggatcgacctgtcggtcattttcagcatgatcttcatctaccgcatcctct 782
| || |||||||| || || || || ||||||||||||||||||||||||||||| || |
Sbjct: 1434 ggtcaaagtggattgatctctcagtaattttcagcatgatcttcatctaccgcattctgt 1493
Query: 783 tcttcctcatgatcaag 799
|||||||||||||||||
Sbjct: 1494 tcttcctcatgatcaag 1510
>gb|CB647021.1|CB647021 OSJNEb09M07.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb09M07 5', mRNA sequence
Length = 778
Score = 464 bits (234), Expect = e-128
Identities = 484/566 (85%), Gaps = 2/566 (0%)
Strand = Plus / Plus
Query: 5 gcaccctgaccaancgctccttcatcaacatgtcgcgggactttgg-tactactggctna 63
|||| |||||||| |||||||||||||||||||| ||||||| || || |||||||| |
Sbjct: 213 gcacactgaccaagcgctccttcatcaacatgtcaagggacttcgggtattactggctga 272
Query: 64 g-ctcntnatttacctcctcgtcaccgtttgcatcggcacgatctacctggacgtcggca 122
| ||| | || || |||||||| ||||| ||||| ||||| |||||| ||||||||||
Sbjct: 273 ggctcctcatctatctcctcgtgaccgtctgcattggcaccatctactatgacgtcggca 332
Query: 123 ccaaatacacatccatcctggccagggctgcctgctccgcgttcgtctttgggttcgtta 182
|||| ||||||||||||||||| ||||||||||| |||| |||||||| || ||||| |
Sbjct: 333 ccaagtacacatccatcctggctagggctgcctgtaccgcattcgtcttcggattcgtca 392
Query: 183 cgttcatgtccattggaggattcccttcgttcgttgaagaaatgaaggtcttccagcggg 242
| |||||||| |||||||| |||||||| || ||||||||||||||||| ||||| |||
Sbjct: 393 ctttcatgtcaattggagggttcccttcatttgttgaagaaatgaaggttttccaaaggg 452
Query: 243 aacggctgaacgggcactacggtgtcgcggcgtttgtcatcagcaacaccatctcagcca 302
| |||||||| ||||| |||||||||||||| ||||||||||||||||| ||||| ||
Sbjct: 453 agcggctgaatgggcattacggtgtcgcggcttttgtcatcagcaacacaatctcggcgc 512
Query: 303 cgccgttcctgattctgatatgcttcttgtcgggaaccatatgctacttcatggtgcgcc 362
||| ||| || | ||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 513 tgccattcttggtcctgatatgcttcttgtcagggaccatatgctacttcatggtgcgcc 572
Query: 363 tccatcctggcttcgagcactacatcttcttcgtcttgaacctgtacgccagcgttacgg 422
| || || || ||| ||||||||||||||||| | ||||| ||||||||||| || |
Sbjct: 573 ttcacccaggtttctcccactacatcttcttcgttctcaacctctacgccagcgtcactg 632
Query: 423 tggtcgagagcttgatgatggcgattgccagtgtcattccaaatttcctcatgggtatca 482
|||| ||||||||||||||||| ||||| |||||||| || |||||||||||||| ||||
Sbjct: 633 tggttgagagcttgatgatggccattgcaagtgtcatccctaatttcctcatggggatca 692
Query: 483 tcataggggccgggattcagggaatattcatgctggtctctggctacttcagacttccat 542
| ||||| || |||||||| |||||||| ||||| |||||||| ||||| |||||||| |
Sbjct: 693 ttataggagctgggattcacggaatatttatgcttgtctctggatactttagacttcctt 752
Query: 543 acgacatcccgaagcccttttggaga 568
||||||| |||||||| ||||||||
Sbjct: 753 acgacattccgaagcctgtttggaga 778
>gb|CB649274.1|CB649274 OSJNEb13B21.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb13B21 3', mRNA sequence
Length = 743
Score = 412 bits (208), Expect = e-112
Identities = 367/420 (87%)
Strand = Plus / Minus
Query: 380 cactacatcttcttcgtcttgaacctgtacgccagcgttacggtggtcgagagcttgatg 439
||||||||||||||||| | ||||| ||||||||||| || ||||| ||||||||||||
Sbjct: 733 cactacatcttcttcgttctcaacctctacgccagcgtcactgtggttgagagcttgatg 674
Query: 440 atggcgattgccagtgtcattccaaatttcctcatgggtatcatcataggggccgggatt 499
||||| ||||| |||||||| || |||||||||||||| ||||| ||||| || ||||||
Sbjct: 673 atggccattgcaagtgtcatccctaatttcctcatggggatcattataggagctgggatt 614
Query: 500 cagggaatattcatgctggtctctggctacttcagacttccatacgacatcccgaagccc 559
||||||||||| ||||| |||||||| ||||| |||||||| |||||||| ||||||||
Sbjct: 613 cagggaatatttatgcttgtctctggatactttagacttccttacgacattccgaagcct 554
Query: 560 ttttggagataccccatgcagtacatcagcttccactactgggcactgcagggccagtgc 619
|||||||||||||||||||||||||||||||||| |||||||| |||||||| || |||
Sbjct: 553 gtttggagataccccatgcagtacatcagcttccattactgggcgctgcaggggcaatgc 494
Query: 620 cagaacgacatgaagggcctcgcggtcgacaaccaggacccggaccaacccaagatcccc 679
||||| |||||| | || |||| | ||||||||| |||| |||||||| ||||||||
Sbjct: 493 cagaatgacatggatggtctcgtatttgacaaccagtacccagaccaaccgaagatccct 434
Query: 680 ggggacttcatcctcaagtacatcttccagatcaacgtggaccgttccaagtggatcgac 739
|| |||||||| || |||||||| ||||||||||||||| |||| || |||||||| ||
Sbjct: 433 ggagacttcattctgaagtacatattccagatcaacgtgcaccggtcaaagtggattgat 374
Query: 740 ctgtcggtcattttcagcatgatcttcatctaccgcatcctcttcttcctcatgatcaag 799
|| || || ||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 373 ctctcagtaattttcagcatgatcttcatctaccgcattctgttcttcctcatgatcaag 314
>gb|CB680841.1|CB680841 OSJNEf06E13.r OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf06E13 3', mRNA sequence
Length = 812
Score = 377 bits (190), Expect = e-102
Identities = 331/378 (87%)
Strand = Plus / Minus
Query: 422 gtggtcgagagcttgatgatggcgattgccagtgtcattccaaatttcctcatgggtatc 481
||||| ||||||||||||||||| ||||| |||||||| || |||||||||||||| |||
Sbjct: 807 gtggttgagagcttgatgatggccattgcaagtgtcatccctaatttcctcatggggatc 748
Query: 482 atcataggggccgggattcagggaatattcatgctggtctctggctacttcagacttcca 541
|| ||||| || ||||||||||||||||| ||||| |||||||| ||||| ||||||||
Sbjct: 747 attataggagctgggattcagggaatatttatgcttgtctctggatactttagacttcct 688
Query: 542 tacgacatcccgaagcccttttggagataccccatgcagtacatcagcttccactactgg 601
|||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 687 tacgacattccgaagcctgtttggagataccccatgcagtacatcagcttccattactgg 628
Query: 602 gcactgcagggccagtgccagaacgacatgaagggcctcgcggtcgacaaccaggacccg 661
|| |||||||| || |||||||| |||||| | || |||| | ||||||||| ||||
Sbjct: 627 gcgctgcaggggcaatgccagaatgacatggatggtctcgtatttgacaaccagtaccca 568
Query: 662 gaccaacccaagatccccggggacttcatcctcaagtacatcttccagatcaacgtggac 721
|||||||| |||||||| || |||||||| || |||||||| ||||||||||||||| ||
Sbjct: 567 gaccaaccgaagatccctggagacttcattctgaagtacatattccagatcaacgtgcac 508
Query: 722 cgttccaagtggatcgacctgtcggtcattttcagcatgatcttcatctaccgcatcctc 781
|| || |||||||| || || || || ||||||||||||||||||||||||||||| ||
Sbjct: 507 cggtcaaagtggattgatctctcagtaattttcagcatgatcttcatctaccgcattctg 448
Query: 782 ttcttcctcatgatcaag 799
||||||||||||||||||
Sbjct: 447 ttcttcctcatgatcaag 430
>gb|CB655463.1|CB655463 OSJNEc08O20.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc08O20 3', mRNA sequence
Length = 714
Score = 369 bits (186), Expect = 2e-099
Identities = 330/378 (87%)
Strand = Plus / Minus
Query: 422 gtggtcgagagcttgatgatggcgattgccagtgtcattccaaatttcctcatgggtatc 481
||||| ||||||||||||||||| ||||| |||||||| || |||||||||||||| |||
Sbjct: 709 gtggttgagagcttgatgatggccattgcaagtgtcatccctaatttcctcatggggatc 650
Query: 482 atcataggggccgggattcagggaatattcatgctggtctctggctacttcagacttcca 541
|| ||||| || |||||||||| |||||| ||||| |||||||| ||||| ||||||||
Sbjct: 649 attataggagctgggattcaggaaatatttatgcttgtctctggatactttagacttcct 590
Query: 542 tacgacatcccgaagcccttttggagataccccatgcagtacatcagcttccactactgg 601
|||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 589 tacgacattccgaagcctgtttggagataccccatgcagtacatcagcttccattactgg 530
Query: 602 gcactgcagggccagtgccagaacgacatgaagggcctcgcggtcgacaaccaggacccg 661
|| |||||||| || |||||||| |||||| | || |||| | ||||||||| ||||
Sbjct: 529 gcgctgcaggggcaatgccagaatgacatggatggtctcgtatttgacaaccagtaccca 470
Query: 662 gaccaacccaagatccccggggacttcatcctcaagtacatcttccagatcaacgtggac 721
|||||||| |||||||| || |||||||| || |||||||| ||||||||||||||| ||
Sbjct: 469 gaccaaccgaagatccctggagacttcattctgaagtacatattccagatcaacgtgcac 410
Query: 722 cgttccaagtggatcgacctgtcggtcattttcagcatgatcttcatctaccgcatcctc 781
|| || |||||||| || || || || ||||||||||||||||||||||||||||| ||
Sbjct: 409 cggtcaaagtggattgatctctcagtaattttcagcatgatcttcatctaccgcattctg 350
Query: 782 ttcttcctcatgatcaag 799
||||||||||||||||||
Sbjct: 349 ttcttcctcatgatcaag 332
>gb|CB649820.1|CB649820 OSJNEb13P14.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb13P14 3', mRNA sequence
Length = 801
Score = 367 bits (185), Expect = 8e-099
Identities = 325/372 (87%)
Strand = Plus / Minus
Query: 428 gagagcttgatgatggcgattgccagtgtcattccaaatttcctcatgggtatcatcata 487
||||||||||||||||| ||||| |||||||| | |||||||||||||| ||||| |||
Sbjct: 801 gagagcttgatgatggccattgcaagtgtcatccntaatttcctcatggggatcattata 742
Query: 488 ggggccgggattcagggaatattcatgctggtctctggctacttcagacttccatacgac 547
|| || ||||||||||||||||| ||||| |||||||| ||||| |||||||| ||||||
Sbjct: 741 ggagctgggattcagggaatatttatgcttgtctctggatactttagacttccttacgac 682
Query: 548 atcccgaagcccttttggagataccccatgcagtacatcagcttccactactgggcactg 607
|| |||||||| |||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 681 attccgaagcctgtttggagataccccatgcagtacatcagcttccattactgggcgctg 622
Query: 608 cagggccagtgccagaacgacatgaagggcctcgcggtcgacaaccaggacccggaccaa 667
||||| || |||||||| |||||| | || |||| | ||||||||| |||| ||||||
Sbjct: 621 caggggcaatgccagaatgacatggatggtctcgtatttgacaaccagtacccagaccaa 562
Query: 668 cccaagatccccggggacttcatcctcaagtacatcttccagatcaacgtggaccgttcc 727
|| |||||||| || |||||||| || |||||||| ||||||||||||||| |||| ||
Sbjct: 561 ccgaagatccctggagacttcattctgaagtacatattccagatcaacgtgcaccggtca 502
Query: 728 aagtggatcgacctgtcggtcattttcagcatgatcttcatctaccgcatcctcttcttc 787
|||||||| || || || || ||||||||||||||||||||||||||||| || ||||||
Sbjct: 501 aagtggattgatctctcagtaattttcagcatgatcttcatctaccgcattctgttcttc 442
Query: 788 ctcatgatcaag 799
||||||||||||
Sbjct: 441 ctcatgatcaag 430
>ref|NM_197150.1| Oryza sativa (japonica cultivar-group) putative ABC transporter
(OSJNBa0041P03.4), mRNA
Length = 2284
Score = 327 bits (165), Expect = 7e-087
Identities = 528/649 (81%)
Strand = Plus / Plus
Query: 164 ttcgtctttgggttcgttacgttcatgtccattggaggattcccttcgttcgttgaagaa 223
|||||||| || || || ||||||||||| |||||||||||||| || || || |||||
Sbjct: 1378 ttcgtcttcggctttgtcacgttcatgtcgattggaggattcccgtcttttgtggaagac 1437
Query: 224 atgaaggtcttccagcgggaacggctgaacgggcactacggtgtcgcggcgtttgtcatc 283
|||||||| || ||| | || |||| || |||||||| || || ||| || || ||
Sbjct: 1438 atgaaggtgtttcagagagagaggctcaatgggcactatggcgtgctggcattcgtgata 1497
Query: 284 agcaacaccatctcagccacgccgttcctgattctgatatgcttcttgtcgggaaccata 343
|||||||| ||||| || | ||| ||| |||| |||| |||| | || || || ||
Sbjct: 1498 agcaacacgatctcggcaatgccattcttgatcttgatcaccttcatctccgggacaatg 1557
Query: 344 tgctacttcatggtgcgcctccatcctggcttcgagcactacatcttcttcgtcttgaac 403
||||||||||||||||||||||| || |||||| ||||||| ||||||||||| | |
Sbjct: 1558 tgctacttcatggtgcgcctccacccgggcttcacgcactacctcttcttcgtcctctgc 1617
Query: 404 ctgtacgccagcgttacggtggtcgagagcttgatgatggcgattgccagtgtcattcca 463
|| ||||| ||||| || || |||||||||||||||||||| |||||||||||||| ||
Sbjct: 1618 ctctacgcaagcgtcaccgtcgtcgagagcttgatgatggccattgccagtgtcatcccc 1677
Query: 464 aatttcctcatgggtatcatcataggggccgggattcagggaatattcatgctggtctct 523
|| ||||||||||| |||||||| || || || |||||||| |||||||||||||| ||
Sbjct: 1678 aacttcctcatgggcatcatcatcggtgcaggaattcaggggatattcatgctggtttca 1737
Query: 524 ggctacttcagacttccatacgacatcccgaagcccttttggagataccccatgcagtac 583
|| |||||||| ||||| | |||||||| ||||| || ||||| || |||||| |||
Sbjct: 1738 ggatacttcaggcttccccatgacatcccaaagccattctggaggtatcccatgtcatac 1797
Query: 584 atcagcttccactactgggcactgcagggccagtgccagaacgacatgaagggcctcgcg 643
||||||||||||||||||||| ||||||| |||| |||||||||| |||||||||| | |
Sbjct: 1798 atcagcttccactactgggcattgcagggtcagtaccagaacgacctgaagggcctggtg 1857
Query: 644 gtcgacaaccaggacccggaccaacccaagatccccggggacttcatcctcaagtacatc 703
|||||||||||||| || | |||||||||||||| || | |||||| || || |
Sbjct: 1858 ttcgacaaccaggacgacgagctccccaagatccccggcgagtacatcctggagaacgtg 1917
Query: 704 ttccagatcaacgtggaccgttccaagtggatcgacctgtcggtcattttcagcatgatc 763
||||||||| ||||| ||| ||||||||| | ||||| | || | ||||||||||||
Sbjct: 1918 ttccagatcgacgtgagccgatccaagtggctggacctcgccgtgctcttcagcatgatc 1977
Query: 764 ttcatctaccgcatcctcttcttcctcatgatcaagatcaacgaggacg 812
|||||||||||| ||||||||||| |||||||||| ||| ||||||||
Sbjct: 1978 ttcatctaccgcctcctcttcttcgccatgatcaaggtcagcgaggacg 2026
Score = 52.0 bits (26), Expect = 6e-004
Identities = 36/38 (94%), Gaps = 1/38 (2%)
Strand = Plus / Plus
Query: 25 ttcatcaacatgtcgcgggactt-tggtactactggct 61
||||||||||||||||||||||| |||||||||||||
Sbjct: 1237 ttcatcaacatgtcgcgggacttcgggtactactggct 1274
>gb|AU163548.1|AU163548 AU163548 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E1402, mRNA sequence
Length = 704
Score = 319 bits (161), Expect = 2e-084
Identities = 392/469 (83%)
Strand = Plus / Plus
Query: 344 tgctacttcatggtgcgcctccatcctggcttcgagcactacatcttcttcgtcttgaac 403
||||||||||||||||||||||| || |||||| ||||||| ||||||||||| | |
Sbjct: 179 tgctacttcatggtgcgcctccacccgggcttcacgcactacctcttcttcgtcctctgc 238
Query: 404 ctgtacgccagcgttacggtggtcgagagcttgatgatggcgattgccagtgtcattcca 463
|| ||||| ||||| || || |||||||||||||||||||| |||||||||||||| ||
Sbjct: 239 ctctacgcaagcgtcaccgtcgtcgagagcttgatgatggccattgccagtgtcatcccc 298
Query: 464 aatttcctcatgggtatcatcataggggccgggattcagggaatattcatgctggtctct 523
|| ||||||||||| |||||||| || || || |||||||| |||||||||||||| ||
Sbjct: 299 aacttcctcatgggcatcatcatcggtgcaggaattcaggggatattcatgctggtttca 358
Query: 524 ggctacttcagacttccatacgacatcccgaagcccttttggagataccccatgcagtac 583
|| |||||||| ||||| | |||||||| ||||| || ||||| || |||||| |||
Sbjct: 359 ggatacttcaggcttccccatgacatcccaaagccattctggaggtatcccatgtcatac 418
Query: 584 atcagcttccactactgggcactgcagggccagtgccagaacgacatgaagggcctcgcg 643
||||||||||||||||||||| ||||||| |||| |||||||||| |||||||||| | |
Sbjct: 419 atcagcttccactactgggcattgcagggtcagtaccagaacgacctgaagggcctggtg 478
Query: 644 gtcgacaaccaggacccggaccaacccaagatccccggggacttcatcctcaagtacatc 703
|||||||||||||| || | |||||||||||||| || | |||||| || || |
Sbjct: 479 ttcgacaaccaggacgacgagctccccaagatccccggcgagtacatcctggagaacgtg 538
Query: 704 ttccagatcaacgtggaccgttccaagtggatcgacctgtcggtcattttcagcatgatc 763
||||||||| ||||| ||| ||||||||| | ||||| | || | ||||||||||||
Sbjct: 539 ttccagatcgacgtgagccgatccaagtggctggacctcgccgtgctcttcagcatgatc 598
Query: 764 ttcatctaccgcatcctcttcttcctcatgatcaagatcaacgaggacg 812
|||||||||||| ||||||||||| |||||||||| ||| ||||||||
Sbjct: 599 ttcatctaccgcctcctcttcttcgccatgatcaaggtcagcgaggacg 647
>dbj|AK072452.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023121D13, full
insert sequence
Length = 2554
Score = 319 bits (161), Expect = 2e-084
Identities = 527/649 (81%)
Strand = Plus / Plus
Query: 164 ttcgtctttgggttcgttacgttcatgtccattggaggattcccttcgttcgttgaagaa 223
|||||||| || || || ||||||||||| |||||||||||||| || || || |||||
Sbjct: 1494 ttcgtcttcggctttgtcacgttcatgtcgattggaggattcccgtcttttgtggaagac 1553
Query: 224 atgaaggtcttccagcgggaacggctgaacgggcactacggtgtcgcggcgtttgtcatc 283
|||||||| || ||| | || |||| || |||||||| || || ||| || || ||
Sbjct: 1554 atgaaggtgtttcagagagagaggctcaatgggcactatggcgtgctggcattcgtgata 1613
Query: 284 agcaacaccatctcagccacgccgttcctgattctgatatgcttcttgtcgggaaccata 343
|||||||| ||||| || | ||| ||| |||| |||| |||| | || || || ||
Sbjct: 1614 agcaacacgatctcggcaatgccattcttgatcttgatcaccttcatctccgggacaatg 1673
Query: 344 tgctacttcatggtgcgcctccatcctggcttcgagcactacatcttcttcgtcttgaac 403
||||||||||||||||||||||| || |||||| ||||||| ||||||||||| | |
Sbjct: 1674 tgctacttcatggtgcgcctccacccgggcttcacgcactacctcttcttcgtcctctgc 1733
Query: 404 ctgtacgccagcgttacggtggtcgagagcttgatgatggcgattgccagtgtcattcca 463
|| ||||| ||||| || || |||||||||||||||||||| |||||||||||||| ||
Sbjct: 1734 ctctacgcaagcgtcaccgtcgtcgagagcttgatgatggccattgccagtgtcatcccc 1793
Query: 464 aatttcctcatgggtatcatcataggggccgggattcagggaatattcatgctggtctct 523
|| ||||||||||| |||||||| || || || |||||||| || ||||||||||| ||
Sbjct: 1794 aacttcctcatgggcatcatcatcggtgcaggaattcaggggatgttcatgctggtttca 1853
Query: 524 ggctacttcagacttccatacgacatcccgaagcccttttggagataccccatgcagtac 583
|| |||||||| ||||| | |||||||| ||||| || ||||| || |||||| |||
Sbjct: 1854 ggatacttcaggcttccccatgacatcccaaagccattctggaggtatcccatgtcatac 1913
Query: 584 atcagcttccactactgggcactgcagggccagtgccagaacgacatgaagggcctcgcg 643
||||||||||||||||||||| ||||||| |||| |||||||||| |||||||||| | |
Sbjct: 1914 atcagcttccactactgggcattgcagggtcagtaccagaacgacctgaagggcctggtg 1973
Query: 644 gtcgacaaccaggacccggaccaacccaagatccccggggacttcatcctcaagtacatc 703
|||||||||||||| || | |||||||||||||| || | |||||| || || |
Sbjct: 1974 ttcgacaaccaggacgacgagctccccaagatccccggcgagtacatcctggagaacgtg 2033
Query: 704 ttccagatcaacgtggaccgttccaagtggatcgacctgtcggtcattttcagcatgatc 763
||||||||| ||||| ||| ||||||||| | ||||| | || | ||||||||||||
Sbjct: 2034 ttccagatcgacgtgagccgatccaagtggctggacctcgccgtgctcttcagcatgatc 2093
Query: 764 ttcatctaccgcatcctcttcttcctcatgatcaagatcaacgaggacg 812
|||||||||||| ||||||||||| |||||||||| ||| ||||||||
Sbjct: 2094 ttcatctaccgcctcctcttcttcgccatgatcaaggtcagcgaggacg 2142
Score = 52.0 bits (26), Expect = 6e-004
Identities = 36/38 (94%), Gaps = 1/38 (2%)
Strand = Plus / Plus
Query: 25 ttcatcaacatgtcgcgggactt-tggtactactggct 61
||||||||||||||||||||||| |||||||||||||
Sbjct: 1353 ttcatcaacatgtcgcgggacttcgggtactactggct 1390
>gb|AACV01010158.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010158, whole
genome shotgun sequence
Length = 45284
Score = 230 bits (116), Expect = 1e-057
Identities = 227/264 (85%)
Strand = Plus / Minus
Query: 240 gggaacggctgaacgggcactacggtgtcgcggcgtttgtcatcagcaacaccatctcag 299
|||| |||||||| ||||| |||||||||||||| ||||||||||||||||| ||||| |
Sbjct: 3346 gggagcggctgaatgggcattacggtgtcgcggcttttgtcatcagcaacacaatctcgg 3287
Query: 300 ccacgccgttcctgattctgatatgcttcttgtcgggaaccatatgctacttcatggtgc 359
| ||| ||| || | ||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 3286 cgctgccattcttggtcctgatatgcttcttgtcagggaccatatgctacttcatggtgc 3227
Query: 360 gcctccatcctggcttcgagcactacatcttcttcgtcttgaacctgtacgccagcgtta 419
|||| || || || ||| ||||||||||||||||| | ||||| ||||||||||| |
Sbjct: 3226 gccttcacccaggtttctcccactacatcttcttcgttctcaacctctacgccagcgtca 3167
Query: 420 cggtggtcgagagcttgatgatggcgattgccagtgtcattccaaatttcctcatgggta 479
| ||||| ||||||||||||||||| ||||| |||||||| || |||||||||||||| |
Sbjct: 3166 ctgtggttgagagcttgatgatggccattgcaagtgtcatccctaatttcctcatgggga 3107
Query: 480 tcatcataggggccgggattcagg 503
|||| ||||| || ||||||||||
Sbjct: 3106 tcattataggagctgggattcagg 3083
Score = 161 bits (81), Expect = 9e-037
Identities = 135/153 (88%)
Strand = Plus / Minus
Query: 647 gacaaccaggacccggaccaacccaagatccccggggacttcatcctcaagtacatcttc 706
||||||||| |||| |||||||| |||||||| || |||||||| || |||||||| |||
Sbjct: 2253 gacaaccagtacccagaccaaccgaagatccctggagacttcattctgaagtacatattc 2194
Query: 707 cagatcaacgtggaccgttccaagtggatcgacctgtcggtcattttcagcatgatcttc 766
|||||||||||| |||| || |||||||| || || || || ||||||||||||||||||
Sbjct: 2193 cagatcaacgtgcaccggtcaaagtggattgatctctcagtaattttcagcatgatcttc 2134
Query: 767 atctaccgcatcctcttcttcctcatgatcaag 799
||||||||||| || ||||||||||||||||||
Sbjct: 2133 atctaccgcattctgttcttcctcatgatcaag 2101
Score = 141 bits (71), Expect = 9e-031
Identities = 101/111 (90%)
Strand = Plus / Minus
Query: 501 agggaatattcatgctggtctctggctacttcagacttccatacgacatcccgaagccct 560
|||||||||| ||||| |||||||| ||||| |||||||| |||||||| ||||||||
Sbjct: 2488 agggaatatttatgcttgtctctggatactttagacttccttacgacattccgaagcctg 2429
Query: 561 tttggagataccccatgcagtacatcagcttccactactgggcactgcagg 611
|||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 2428 tttggagataccccatgcagtacatcagcttccattactgggcgctgcagg 2378
Score = 105 bits (53), Expect = 5e-020
Identities = 120/141 (85%), Gaps = 2/141 (1%)
Strand = Plus / Minus
Query: 5 gcaccctgaccaancgctccttcatcaacatgtcgcgggactttgg-tactactggctna 63
|||| |||||||| |||||||||||||||||||| ||||||| || || |||||||| |
Sbjct: 3812 gcacactgaccaagcgctccttcatcaacatgtcaagggacttcgggtattactggctga 3753
Query: 64 g-ctcntnatttacctcctcgtcaccgtttgcatcggcacgatctacctggacgtcggca 122
| ||| | || || |||||||| ||||| ||||| ||||| |||||| ||||||||||
Sbjct: 3752 ggctcctcatctatctcctcgtgaccgtctgcattggcaccatctactatgacgtcggca 3693
Query: 123 ccaaatacacatccatcctgg 143
|||| ||||||||||||||||
Sbjct: 3692 ccaagtacacatccatcctgg 3672
Score = 83.8 bits (42), Expect = 2e-013
Identities = 75/86 (87%)
Strand = Plus / Minus
Query: 146 agggctgcctgctccgcgttcgtctttgggttcgttacgttcatgtccattggaggattc 205
||||||||||| |||| |||||||| || ||||| || |||||||| |||||||| |||
Sbjct: 3521 agggctgcctgtaccgcattcgtcttcggattcgtcactttcatgtcaattggagggttc 3462
Query: 206 ccttcgttcgttgaagaaatgaaggt 231
||||| || |||||||||||||||||
Sbjct: 3461 ccttcatttgttgaagaaatgaaggt 3436
>ref|NT_079865.2| Oryza sativa (japonica cultivar-group)
Length = 3674553
Score = 230 bits (116), Expect = 1e-057
Identities = 227/264 (85%)
Strand = Plus / Plus
Query: 240 gggaacggctgaacgggcactacggtgtcgcggcgtttgtcatcagcaacaccatctcag 299
|||| |||||||| ||||| |||||||||||||| ||||||||||||||||| ||||| |
Sbjct: 149883 gggagcggctgaatgggcattacggtgtcgcggcttttgtcatcagcaacacaatctcgg 149942
Query: 300 ccacgccgttcctgattctgatatgcttcttgtcgggaaccatatgctacttcatggtgc 359
| ||| ||| || | ||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 149943 cgctgccattcttggtcctgatatgcttcttgtcagggaccatatgctacttcatggtgc 150002
Query: 360 gcctccatcctggcttcgagcactacatcttcttcgtcttgaacctgtacgccagcgtta 419
|||| || || || ||| ||||||||||||||||| | ||||| ||||||||||| |
Sbjct: 150003 gccttcacccaggtttctcccactacatcttcttcgttctcaacctctacgccagcgtca 150062
Query: 420 cggtggtcgagagcttgatgatggcgattgccagtgtcattccaaatttcctcatgggta 479
| ||||| ||||||||||||||||| ||||| |||||||| || |||||||||||||| |
Sbjct: 150063 ctgtggttgagagcttgatgatggccattgcaagtgtcatccctaatttcctcatgggga 150122
Query: 480 tcatcataggggccgggattcagg 503
|||| ||||| || ||||||||||
Sbjct: 150123 tcattataggagctgggattcagg 150146
Score = 161 bits (81), Expect = 9e-037
Identities = 135/153 (88%)
Strand = Plus / Plus
Query: 647 gacaaccaggacccggaccaacccaagatccccggggacttcatcctcaagtacatcttc 706
||||||||| |||| |||||||| |||||||| || |||||||| || |||||||| |||
Sbjct: 150976 gacaaccagtacccagaccaaccgaagatccctggagacttcattctgaagtacatattc 151035
Query: 707 cagatcaacgtggaccgttccaagtggatcgacctgtcggtcattttcagcatgatcttc 766
|||||||||||| |||| || |||||||| || || || || ||||||||||||||||||
Sbjct: 151036 cagatcaacgtgcaccggtcaaagtggattgatctctcagtaattttcagcatgatcttc 151095
Query: 767 atctaccgcatcctcttcttcctcatgatcaag 799
||||||||||| || ||||||||||||||||||
Sbjct: 151096 atctaccgcattctgttcttcctcatgatcaag 151128
Score = 141 bits (71), Expect = 9e-031
Identities = 101/111 (90%)
Strand = Plus / Plus
Query: 501 agggaatattcatgctggtctctggctacttcagacttccatacgacatcccgaagccct 560
|||||||||| ||||| |||||||| ||||| |||||||| |||||||| ||||||||
Sbjct: 150741 agggaatatttatgcttgtctctggatactttagacttccttacgacattccgaagcctg 150800
Query: 561 tttggagataccccatgcagtacatcagcttccactactgggcactgcagg 611
|||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 150801 tttggagataccccatgcagtacatcagcttccattactgggcgctgcagg 150851
Score = 105 bits (53), Expect = 5e-020
Identities = 120/141 (85%), Gaps = 2/141 (1%)
Strand = Plus / Plus
Query: 5 gcaccctgaccaancgctccttcatcaacatgtcgcgggactttgg-tactactggctna 63
|||| |||||||| |||||||||||||||||||| ||||||| || || |||||||| |
Sbjct: 149417 gcacactgaccaagcgctccttcatcaacatgtcaagggacttcgggtattactggctga 149476
Query: 64 g-ctcntnatttacctcctcgtcaccgtttgcatcggcacgatctacctggacgtcggca 122
| ||| | || || |||||||| ||||| ||||| ||||| |||||| ||||||||||
Sbjct: 149477 ggctcctcatctatctcctcgtgaccgtctgcattggcaccatctactatgacgtcggca 149536
Query: 123 ccaaatacacatccatcctgg 143
|||| ||||||||||||||||
Sbjct: 149537 ccaagtacacatccatcctgg 149557
Score = 83.8 bits (42), Expect = 2e-013
Identities = 75/86 (87%)
Strand = Plus / Plus
Query: 146 agggctgcctgctccgcgttcgtctttgggttcgttacgttcatgtccattggaggattc 205
||||||||||| |||| |||||||| || ||||| || |||||||| |||||||| |||
Sbjct: 149708 agggctgcctgtaccgcattcgtcttcggattcgtcactttcatgtcaattggagggttc 149767
Query: 206 ccttcgttcgttgaagaaatgaaggt 231
||||| || |||||||||||||||||
Sbjct: 149768 ccttcatttgttgaagaaatgaaggt 149793
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 230 bits (116), Expect = 1e-057
Identities = 227/264 (85%)
Strand = Plus / Plus
Query: 240 gggaacggctgaacgggcactacggtgtcgcggcgtttgtcatcagcaacaccatctcag 299
|||| |||||||| ||||| |||||||||||||| ||||||||||||||||| ||||| |
Sbjct: 4208259 gggagcggctgaatgggcattacggtgtcgcggcttttgtcatcagcaacacaatctcgg 4208318
Query: 300 ccacgccgttcctgattctgatatgcttcttgtcgggaaccatatgctacttcatggtgc 359
| ||| ||| || | ||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 4208319 cgctgccattcttggtcctgatatgcttcttgtcagggaccatatgctacttcatggtgc 4208378
Query: 360 gcctccatcctggcttcgagcactacatcttcttcgtcttgaacctgtacgccagcgtta 419
|||| || || || ||| ||||||||||||||||| | ||||| ||||||||||| |
Sbjct: 4208379 gccttcacccaggtttctcccactacatcttcttcgttctcaacctctacgccagcgtca 4208438
Query: 420 cggtggtcgagagcttgatgatggcgattgccagtgtcattccaaatttcctcatgggta 479
| ||||| ||||||||||||||||| ||||| |||||||| || |||||||||||||| |
Sbjct: 4208439 ctgtggttgagagcttgatgatggccattgcaagtgtcatccctaatttcctcatgggga 4208498
Query: 480 tcatcataggggccgggattcagg 503
|||| ||||| || ||||||||||
Sbjct: 4208499 tcattataggagctgggattcagg 4208522
Score = 161 bits (81), Expect = 9e-037
Identities = 135/153 (88%)
Strand = Plus / Plus
Query: 647 gacaaccaggacccggaccaacccaagatccccggggacttcatcctcaagtacatcttc 706
||||||||| |||| |||||||| |||||||| || |||||||| || |||||||| |||
Sbjct: 4209352 gacaaccagtacccagaccaaccgaagatccctggagacttcattctgaagtacatattc 4209411
Query: 707 cagatcaacgtggaccgttccaagtggatcgacctgtcggtcattttcagcatgatcttc 766
|||||||||||| |||| || |||||||| || || || || ||||||||||||||||||
Sbjct: 4209412 cagatcaacgtgcaccggtcaaagtggattgatctctcagtaattttcagcatgatcttc 4209471
Query: 767 atctaccgcatcctcttcttcctcatgatcaag 799
||||||||||| || ||||||||||||||||||
Sbjct: 4209472 atctaccgcattctgttcttcctcatgatcaag 4209504
Score = 141 bits (71), Expect = 9e-031
Identities = 101/111 (90%)
Strand = Plus / Plus
Query: 501 agggaatattcatgctggtctctggctacttcagacttccatacgacatcccgaagccct 560
|||||||||| ||||| |||||||| ||||| |||||||| |||||||| ||||||||
Sbjct: 4209117 agggaatatttatgcttgtctctggatactttagacttccttacgacattccgaagcctg 4209176
Query: 561 tttggagataccccatgcagtacatcagcttccactactgggcactgcagg 611
|||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 4209177 tttggagataccccatgcagtacatcagcttccattactgggcgctgcagg 4209227
Score = 105 bits (53), Expect = 5e-020
Identities = 120/141 (85%), Gaps = 2/141 (1%)
Strand = Plus / Plus
Query: 5 gcaccctgaccaancgctccttcatcaacatgtcgcgggactttgg-tactactggctna 63
|||| |||||||| |||||||||||||||||||| ||||||| || || |||||||| |
Sbjct: 4207793 gcacactgaccaagcgctccttcatcaacatgtcaagggacttcgggtattactggctga 4207852
Query: 64 g-ctcntnatttacctcctcgtcaccgtttgcatcggcacgatctacctggacgtcggca 122
| ||| | || || |||||||| ||||| ||||| ||||| |||||| ||||||||||
Sbjct: 4207853 ggctcctcatctatctcctcgtgaccgtctgcattggcaccatctactatgacgtcggca 4207912
Query: 123 ccaaatacacatccatcctgg 143
|||| ||||||||||||||||
Sbjct: 4207913 ccaagtacacatccatcctgg 4207933
Score = 83.8 bits (42), Expect = 2e-013
Identities = 75/86 (87%)
Strand = Plus / Plus
Query: 146 agggctgcctgctccgcgttcgtctttgggttcgttacgttcatgtccattggaggattc 205
||||||||||| |||| |||||||| || ||||| || |||||||| |||||||| |||
Sbjct: 4208084 agggctgcctgtaccgcattcgtcttcggattcgtcactttcatgtcaattggagggttc 4208143
Query: 206 ccttcgttcgttgaagaaatgaaggt 231
||||| || |||||||||||||||||
Sbjct: 4208144 ccttcatttgttgaagaaatgaaggt 4208169
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 230 bits (116), Expect = 1e-057
Identities = 227/264 (85%)
Strand = Plus / Plus
Query: 240 gggaacggctgaacgggcactacggtgtcgcggcgtttgtcatcagcaacaccatctcag 299
|||| |||||||| ||||| |||||||||||||| ||||||||||||||||| ||||| |
Sbjct: 23352358 gggagcggctgaatgggcattacggtgtcgcggcttttgtcatcagcaacacaatctcgg 23352417
Query: 300 ccacgccgttcctgattctgatatgcttcttgtcgggaaccatatgctacttcatggtgc 359
| ||| ||| || | ||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 23352418 cgctgccattcttggtcctgatatgcttcttgtcagggaccatatgctacttcatggtgc 23352477
Query: 360 gcctccatcctggcttcgagcactacatcttcttcgtcttgaacctgtacgccagcgtta 419
|||| || || || ||| ||||||||||||||||| | ||||| ||||||||||| |
Sbjct: 23352478 gccttcacccaggtttctcccactacatcttcttcgttctcaacctctacgccagcgtca 23352537
Query: 420 cggtggtcgagagcttgatgatggcgattgccagtgtcattccaaatttcctcatgggta 479
| ||||| ||||||||||||||||| ||||| |||||||| || |||||||||||||| |
Sbjct: 23352538 ctgtggttgagagcttgatgatggccattgcaagtgtcatccctaatttcctcatgggga 23352597
Query: 480 tcatcataggggccgggattcagg 503
|||| ||||| || ||||||||||
Sbjct: 23352598 tcattataggagctgggattcagg 23352621
Score = 161 bits (81), Expect = 9e-037
Identities = 135/153 (88%)
Strand = Plus / Plus
Query: 647 gacaaccaggacccggaccaacccaagatccccggggacttcatcctcaagtacatcttc 706
||||||||| |||| |||||||| |||||||| || |||||||| || |||||||| |||
Sbjct: 23353451 gacaaccagtacccagaccaaccgaagatccctggagacttcattctgaagtacatattc 23353510
Query: 707 cagatcaacgtggaccgttccaagtggatcgacctgtcggtcattttcagcatgatcttc 766
|||||||||||| |||| || |||||||| || || || || ||||||||||||||||||
Sbjct: 23353511 cagatcaacgtgcaccggtcaaagtggattgatctctcagtaattttcagcatgatcttc 23353570
Query: 767 atctaccgcatcctcttcttcctcatgatcaag 799
||||||||||| || ||||||||||||||||||
Sbjct: 23353571 atctaccgcattctgttcttcctcatgatcaag 23353603
Score = 141 bits (71), Expect = 9e-031
Identities = 101/111 (90%)
Strand = Plus / Plus
Query: 501 agggaatattcatgctggtctctggctacttcagacttccatacgacatcccgaagccct 560
|||||||||| ||||| |||||||| ||||| |||||||| |||||||| ||||||||
Sbjct: 23353216 agggaatatttatgcttgtctctggatactttagacttccttacgacattccgaagcctg 23353275
Query: 561 tttggagataccccatgcagtacatcagcttccactactgggcactgcagg 611
|||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 23353276 tttggagataccccatgcagtacatcagcttccattactgggcgctgcagg 23353326
Score = 105 bits (53), Expect = 5e-020
Identities = 120/141 (85%), Gaps = 2/141 (1%)
Strand = Plus / Plus
Query: 5 gcaccctgaccaancgctccttcatcaacatgtcgcgggactttgg-tactactggctna 63
|||| |||||||| |||||||||||||||||||| ||||||| || || |||||||| |
Sbjct: 23351892 gcacactgaccaagcgctccttcatcaacatgtcaagggacttcgggtattactggctga 23351951
Query: 64 g-ctcntnatttacctcctcgtcaccgtttgcatcggcacgatctacctggacgtcggca 122
| ||| | || || |||||||| ||||| ||||| ||||| |||||| ||||||||||
Sbjct: 23351952 ggctcctcatctatctcctcgtgaccgtctgcattggcaccatctactatgacgtcggca 23352011
Query: 123 ccaaatacacatccatcctgg 143
|||| ||||||||||||||||
Sbjct: 23352012 ccaagtacacatccatcctgg 23352032
Score = 83.8 bits (42), Expect = 2e-013
Identities = 75/86 (87%)
Strand = Plus / Plus
Query: 146 agggctgcctgctccgcgttcgtctttgggttcgttacgttcatgtccattggaggattc 205
||||||||||| |||| |||||||| || ||||| || |||||||| |||||||| |||
Sbjct: 23352183 agggctgcctgtaccgcattcgtcttcggattcgtcactttcatgtcaattggagggttc 23352242
Query: 206 ccttcgttcgttgaagaaatgaaggt 231
||||| || |||||||||||||||||
Sbjct: 23352243 ccttcatttgttgaagaaatgaaggt 23352268
>emb|AL662976.3|OSJN00177 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0074L08,
complete sequence
Length = 171551
Score = 230 bits (116), Expect = 1e-057
Identities = 227/264 (85%)
Strand = Plus / Plus
Query: 240 gggaacggctgaacgggcactacggtgtcgcggcgtttgtcatcagcaacaccatctcag 299
|||| |||||||| ||||| |||||||||||||| ||||||||||||||||| ||||| |
Sbjct: 13939 gggagcggctgaatgggcattacggtgtcgcggcttttgtcatcagcaacacaatctcgg 13998
Query: 300 ccacgccgttcctgattctgatatgcttcttgtcgggaaccatatgctacttcatggtgc 359
| ||| ||| || | ||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 13999 cgctgccattcttggtcctgatatgcttcttgtcagggaccatatgctacttcatggtgc 14058
Query: 360 gcctccatcctggcttcgagcactacatcttcttcgtcttgaacctgtacgccagcgtta 419
|||| || || || ||| ||||||||||||||||| | ||||| ||||||||||| |
Sbjct: 14059 gccttcacccaggtttctcccactacatcttcttcgttctcaacctctacgccagcgtca 14118
Query: 420 cggtggtcgagagcttgatgatggcgattgccagtgtcattccaaatttcctcatgggta 479
| ||||| ||||||||||||||||| ||||| |||||||| || |||||||||||||| |
Sbjct: 14119 ctgtggttgagagcttgatgatggccattgcaagtgtcatccctaatttcctcatgggga 14178
Query: 480 tcatcataggggccgggattcagg 503
|||| ||||| || ||||||||||
Sbjct: 14179 tcattataggagctgggattcagg 14202
Score = 161 bits (81), Expect = 9e-037
Identities = 135/153 (88%)
Strand = Plus / Plus
Query: 647 gacaaccaggacccggaccaacccaagatccccggggacttcatcctcaagtacatcttc 706
||||||||| |||| |||||||| |||||||| || |||||||| || |||||||| |||
Sbjct: 15032 gacaaccagtacccagaccaaccgaagatccctggagacttcattctgaagtacatattc 15091
Query: 707 cagatcaacgtggaccgttccaagtggatcgacctgtcggtcattttcagcatgatcttc 766
|||||||||||| |||| || |||||||| || || || || ||||||||||||||||||
Sbjct: 15092 cagatcaacgtgcaccggtcaaagtggattgatctctcagtaattttcagcatgatcttc 15151
Query: 767 atctaccgcatcctcttcttcctcatgatcaag 799
||||||||||| || ||||||||||||||||||
Sbjct: 15152 atctaccgcattctgttcttcctcatgatcaag 15184
Score = 141 bits (71), Expect = 9e-031
Identities = 101/111 (90%)
Strand = Plus / Plus
Query: 501 agggaatattcatgctggtctctggctacttcagacttccatacgacatcccgaagccct 560
|||||||||| ||||| |||||||| ||||| |||||||| |||||||| ||||||||
Sbjct: 14797 agggaatatttatgcttgtctctggatactttagacttccttacgacattccgaagcctg 14856
Query: 561 tttggagataccccatgcagtacatcagcttccactactgggcactgcagg 611
|||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 14857 tttggagataccccatgcagtacatcagcttccattactgggcgctgcagg 14907
Score = 105 bits (53), Expect = 5e-020
Identities = 120/141 (85%), Gaps = 2/141 (1%)
Strand = Plus / Plus
Query: 5 gcaccctgaccaancgctccttcatcaacatgtcgcgggactttgg-tactactggctna 63
|||| |||||||| |||||||||||||||||||| ||||||| || || |||||||| |
Sbjct: 13473 gcacactgaccaagcgctccttcatcaacatgtcaagggacttcgggtattactggctga 13532
Query: 64 g-ctcntnatttacctcctcgtcaccgtttgcatcggcacgatctacctggacgtcggca 122
| ||| | || || |||||||| ||||| ||||| ||||| |||||| ||||||||||
Sbjct: 13533 ggctcctcatctatctcctcgtgaccgtctgcattggcaccatctactatgacgtcggca 13592
Query: 123 ccaaatacacatccatcctgg 143
|||| ||||||||||||||||
Sbjct: 13593 ccaagtacacatccatcctgg 13613
Score = 83.8 bits (42), Expect = 2e-013
Identities = 75/86 (87%)
Strand = Plus / Plus
Query: 146 agggctgcctgctccgcgttcgtctttgggttcgttacgttcatgtccattggaggattc 205
||||||||||| |||| |||||||| || ||||| || |||||||| |||||||| |||
Sbjct: 13764 agggctgcctgtaccgcattcgtcttcggattcgtcactttcatgtcaattggagggttc 13823
Query: 206 ccttcgttcgttgaagaaatgaaggt 231
||||| || |||||||||||||||||
Sbjct: 13824 ccttcatttgttgaagaaatgaaggt 13849
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 230 bits (116), Expect = 1e-057
Identities = 227/264 (85%)
Strand = Plus / Plus
Query: 240 gggaacggctgaacgggcactacggtgtcgcggcgtttgtcatcagcaacaccatctcag 299
|||| |||||||| ||||| |||||||||||||| ||||||||||||||||| ||||| |
Sbjct: 26373306 gggagcggctgaatgggcattacggtgtcgcggcttttgtcatcagcaacacaatctcgg 26373365
Query: 300 ccacgccgttcctgattctgatatgcttcttgtcgggaaccatatgctacttcatggtgc 359
| ||| ||| || | ||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 26373366 cgctgccattcttggtcctgatatgcttcttgtcagggaccatatgctacttcatggtgc 26373425
Query: 360 gcctccatcctggcttcgagcactacatcttcttcgtcttgaacctgtacgccagcgtta 419
|||| || || || ||| ||||||||||||||||| | ||||| ||||||||||| |
Sbjct: 26373426 gccttcacccaggtttctcccactacatcttcttcgttctcaacctctacgccagcgtca 26373485
Query: 420 cggtggtcgagagcttgatgatggcgattgccagtgtcattccaaatttcctcatgggta 479
| ||||| ||||||||||||||||| ||||| |||||||| || |||||||||||||| |
Sbjct: 26373486 ctgtggttgagagcttgatgatggccattgcaagtgtcatccctaatttcctcatgggga 26373545
Query: 480 tcatcataggggccgggattcagg 503
|||| ||||| || ||||||||||
Sbjct: 26373546 tcattataggagctgggattcagg 26373569
Score = 161 bits (81), Expect = 9e-037
Identities = 135/153 (88%)
Strand = Plus / Plus
Query: 647 gacaaccaggacccggaccaacccaagatccccggggacttcatcctcaagtacatcttc 706
||||||||| |||| |||||||| |||||||| || |||||||| || |||||||| |||
Sbjct: 26374399 gacaaccagtacccagaccaaccgaagatccctggagacttcattctgaagtacatattc 26374458
Query: 707 cagatcaacgtggaccgttccaagtggatcgacctgtcggtcattttcagcatgatcttc 766
|||||||||||| |||| || |||||||| || || || || ||||||||||||||||||
Sbjct: 26374459 cagatcaacgtgcaccggtcaaagtggattgatctctcagtaattttcagcatgatcttc 26374518
Query: 767 atctaccgcatcctcttcttcctcatgatcaag 799
||||||||||| || ||||||||||||||||||
Sbjct: 26374519 atctaccgcattctgttcttcctcatgatcaag 26374551
Score = 141 bits (71), Expect = 9e-031
Identities = 101/111 (90%)
Strand = Plus / Plus
Query: 501 agggaatattcatgctggtctctggctacttcagacttccatacgacatcccgaagccct 560
|||||||||| ||||| |||||||| ||||| |||||||| |||||||| ||||||||
Sbjct: 26374164 agggaatatttatgcttgtctctggatactttagacttccttacgacattccgaagcctg 26374223
Query: 561 tttggagataccccatgcagtacatcagcttccactactgggcactgcagg 611
|||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 26374224 tttggagataccccatgcagtacatcagcttccattactgggcgctgcagg 26374274
Score = 105 bits (53), Expect = 5e-020
Identities = 120/141 (85%), Gaps = 2/141 (1%)
Strand = Plus / Plus
Query: 5 gcaccctgaccaancgctccttcatcaacatgtcgcgggactttgg-tactactggctna 63
|||| |||||||| |||||||||||||||||||| ||||||| || || |||||||| |
Sbjct: 26372840 gcacactgaccaagcgctccttcatcaacatgtcaagggacttcgggtattactggctga 26372899
Query: 64 g-ctcntnatttacctcctcgtcaccgtttgcatcggcacgatctacctggacgtcggca 122
| ||| | || || |||||||| ||||| ||||| ||||| |||||| ||||||||||
Sbjct: 26372900 ggctcctcatctatctcctcgtgaccgtctgcattggcaccatctactatgacgtcggca 26372959
Query: 123 ccaaatacacatccatcctgg 143
|||| ||||||||||||||||
Sbjct: 26372960 ccaagtacacatccatcctgg 26372980
Score = 83.8 bits (42), Expect = 2e-013
Identities = 75/86 (87%)
Strand = Plus / Plus
Query: 146 agggctgcctgctccgcgttcgtctttgggttcgttacgttcatgtccattggaggattc 205
||||||||||| |||| |||||||| || ||||| || |||||||| |||||||| |||
Sbjct: 26373131 agggctgcctgtaccgcattcgtcttcggattcgtcactttcatgtcaattggagggttc 26373190
Query: 206 ccttcgttcgttgaagaaatgaaggt 231
||||| || |||||||||||||||||
Sbjct: 26373191 ccttcatttgttgaagaaatgaaggt 26373216
>gb|CB638880.1|CB638880 OSJNEa07M11.r OSJNEa Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEa07M11 3', mRNA sequence
Length = 612
Score = 228 bits (115), Expect = 5e-057
Identities = 205/235 (87%)
Strand = Plus / Minus
Query: 565 gagataccccatgcagtacatcagcttccactactgggcactgcagggccagtgccagaa 624
|||||||||||||||||||||||||||||| |||||||| |||||||| || ||||||||
Sbjct: 612 gagataccccatgcagtacatcagcttccattactgggcgctgcaggggcaatgccagaa 553
Query: 625 cgacatgaagggcctcgcggtcgacaaccaggacccggaccaacccaagatccccgggga 684
|||||| | || |||| | ||||||||| |||| |||||||| |||||||| || ||
Sbjct: 552 tgacatggatggtctcgtatttgacaaccagtacccagaccaaccgaagatccctggaga 493
Query: 685 cttcatcctcaagtacatcttccagatcaacgtggaccgttccaagtggatcgacctgtc 744
|||||| || |||||||| ||||||||||||||| |||| || |||||||| || || ||
Sbjct: 492 cttcattctgaagtacatattccagatcaacgtgcaccggtcaaagtggattgatctctc 433
Query: 745 ggtcattttcagcatgatcttcatctaccgcatcctcttcttcctcatgatcaag 799
|| ||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 432 agtaattttcagcatgatcttcatctaccgcattctgttcttcctcatgatcaag 378
>gb|CB683273.1|CB683273 OSJNEf11H02.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf11H02 5', mRNA sequence
Length = 841
Score = 143 bits (72), Expect = 2e-031
Identities = 175/208 (84%), Gaps = 2/208 (0%)
Strand = Plus / Plus
Query: 5 gcaccctgaccaancgctccttcatcaacatgtcgcgggactttgg-tactactggctna 63
|||| |||||||| |||||||||||||||||||| ||||||| || || |||||||| |
Sbjct: 629 gcacactgaccaagcgctccttcatcaacatgtcaagggacttcgggtattactggctga 688
Query: 64 g-ctcntnatttacctcctcgtcaccgtttgcatcggcacgatctacctggacgtcggca 122
| ||| | || || |||||||| ||||| ||||| ||||| |||||| ||||||||||
Sbjct: 689 ggctcctcatctatctcctcgtgaccgtctgcattggcaccatctactatgacgtcggca 748
Query: 123 ccaaatacacatccatcctggccagggctgcctgctccgcgttcgtctttgggttcgtta 182
|||| ||||||||||||||||| ||| ||||||| |||| |||||||| || ||||| |
Sbjct: 749 ccaagtacacatccatcctggctaggactgcctgtaccgcattcgtcttcggattcgtca 808
Query: 183 cgttcatgtccattggaggattcccttc 210
| |||||||| ||||||| ||||||||
Sbjct: 809 ctttcatgtcagttggagggttcccttc 836
>gb|AQ290249.1|AQ290249 nbxb0036H13f CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0036H13f, DNA sequence
Length = 594
Score = 141 bits (71), Expect = 9e-031
Identities = 101/111 (90%)
Strand = Plus / Plus
Query: 501 agggaatattcatgctggtctctggctacttcagacttccatacgacatcccgaagccct 560
|||||||||| ||||| |||||||| ||||| |||||||| |||||||| ||||||||
Sbjct: 256 agggaatatttatgcttgtctctggatactttagacttccttacgacattccgaagcctg 315
Query: 561 tttggagataccccatgcagtacatcagcttccactactgggcactgcagg 611
|||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 316 tttggagataccccatgcagtacatcagcttccattactgggcgctgcagg 366
Score = 89.7 bits (45), Expect = 3e-015
Identities = 78/89 (87%)
Strand = Plus / Plus
Query: 647 gacaaccaggacccggaccaacccaagatccccggggacttcatcctcaagtacatcttc 706
||||||||| |||| |||||||| |||||||| || |||||||| || |||||||| |||
Sbjct: 492 gacaaccagtacccagaccaaccgaagatccctggagacttcattctgaagtacatattc 551
Query: 707 cagatcaacgtggaccgttccaagtggat 735
|||||||||||| |||| || ||||||||
Sbjct: 552 cagatcaacgtgcaccggtcaaagtggat 580
>gb|AQ573943.1|AQ573943 nbxb0083E17r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0083E17r, DNA sequence
Length = 529
Score = 141 bits (71), Expect = 9e-031
Identities = 101/111 (90%)
Strand = Plus / Plus
Query: 501 agggaatattcatgctggtctctggctacttcagacttccatacgacatcccgaagccct 560
|||||||||| ||||| |||||||| ||||| |||||||| |||||||| ||||||||
Sbjct: 257 agggaatatttatgcttgtctctggatactttagacttccttacgacattccgaagcctg 316
Query: 561 tttggagataccccatgcagtacatcagcttccactactgggcactgcagg 611
|||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 317 tttggagataccccatgcagtacatcagcttccattactgggcgctgcagg 367
>gb|CB647445.1|CB647445 OSJNEb10G02.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb10G02 3', mRNA sequence
Length = 641
Score = 137 bits (69), Expect = 1e-029
Identities = 132/153 (86%)
Strand = Plus / Minus
Query: 647 gacaaccaggacccggaccaacccaagatccccggggacttcatcctcaagtacatcttc 706
||||||||| |||| ||||||| |||||||| || |||||||| | |||||||| |||
Sbjct: 601 gacaaccagtacccagaccaacggaagatccctggagacttcattgtgaagtacatattc 542
Query: 707 cagatcaacgtggaccgttccaagtggatcgacctgtcggtcattttcagcatgatcttc 766
|||||||||||| ||| || |||||||| || || || || ||||||||||||||||||
Sbjct: 541 cagatcaacgtgcgccggtcaaagtggattgatctctcagtaattttcagcatgatcttc 482
Query: 767 atctaccgcatcctcttcttcctcatgatcaag 799
||||||||||| || ||||||||||||||||||
Sbjct: 481 atctaccgcattctgttcttcctcatgatcaag 449
>gb|AC068950.11| Oryza sativa chromosome 10 BAC OSJNBa0041P03 genomic sequence, complete
sequence
Length = 139614
Score = 135 bits (68), Expect = 5e-029
Identities = 137/160 (85%)
Strand = Plus / Minus
Query: 344 tgctacttcatggtgcgcctccatcctggcttcgagcactacatcttcttcgtcttgaac 403
||||||||||||||||||||||| || |||||| ||||||| ||||||||||| | |
Sbjct: 77493 tgctacttcatggtgcgcctccacccgggcttcacgcactacctcttcttcgtcctctgc 77434
Query: 404 ctgtacgccagcgttacggtggtcgagagcttgatgatggcgattgccagtgtcattcca 463
|| ||||| ||||| || || |||||||||||||||||||| |||||||||||||| ||
Sbjct: 77433 ctctacgcaagcgtcaccgtcgtcgagagcttgatgatggccattgccagtgtcatcccc 77374
Query: 464 aatttcctcatgggtatcatcataggggccgggattcagg 503
|| ||||||||||| |||||||| || || || |||||||
Sbjct: 77373 aacttcctcatgggcatcatcatcggtgcaggaattcagg 77334
Score = 117 bits (59), Expect = 1e-023
Identities = 170/207 (82%)
Strand = Plus / Minus
Query: 606 tgcagggccagtgccagaacgacatgaagggcctcgcggtcgacaaccaggacccggacc 665
||||||| |||| |||||||||| |||||||||| | | |||||||||||||| || |
Sbjct: 76406 tgcagggtcagtaccagaacgacctgaagggcctggtgttcgacaaccaggacgacgagc 76347
Query: 666 aacccaagatccccggggacttcatcctcaagtacatcttccagatcaacgtggaccgtt 725
|||||||||||||| || | |||||| || || | ||||||||| ||||| ||| |
Sbjct: 76346 tccccaagatccccggcgagtacatcctggagaacgtgttccagatcgacgtgagccgat 76287
Query: 726 ccaagtggatcgacctgtcggtcattttcagcatgatcttcatctaccgcatcctcttct 785
|||||||| | ||||| | || | |||||||||||||||||||||||| |||||||||
Sbjct: 76286 ccaagtggctggacctcgccgtgctcttcagcatgatcttcatctaccgcctcctcttct 76227
Query: 786 tcctcatgatcaagatcaacgaggacg 812
|| |||||||||| ||| ||||||||
Sbjct: 76226 tcgccatgatcaaggtcagcgaggacg 76200
Score = 87.7 bits (44), Expect = 1e-014
Identities = 95/112 (84%)
Strand = Plus / Minus
Query: 500 cagggaatattcatgctggtctctggctacttcagacttccatacgacatcccgaagccc 559
||||| |||||||||||||| || || |||||||| ||||| | |||||||| |||||
Sbjct: 77126 caggggatattcatgctggtttcaggatacttcaggcttccccatgacatcccaaagcca 77067
Query: 560 ttttggagataccccatgcagtacatcagcttccactactgggcactgcagg 611
|| ||||| || |||||| |||||||||||||||||||||||| ||||||
Sbjct: 77066 ttctggaggtatcccatgtcatacatcagcttccactactgggcattgcagg 77015
Score = 56.0 bits (28), Expect = 4e-005
Identities = 58/68 (85%)
Strand = Plus / Minus
Query: 164 ttcgtctttgggttcgttacgttcatgtccattggaggattcccttcgttcgttgaagaa 223
|||||||| || || || ||||||||||| |||||||||||||| || || || |||||
Sbjct: 77765 ttcgtcttcggctttgtcacgttcatgtcgattggaggattcccgtcttttgtggaagac 77706
Query: 224 atgaaggt 231
||||||||
Sbjct: 77705 atgaaggt 77698
Score = 52.0 bits (26), Expect = 6e-004
Identities = 36/38 (94%), Gaps = 1/38 (2%)
Strand = Plus / Minus
Query: 25 ttcatcaacatgtcgcgggactt-tggtactactggct 61
||||||||||||||||||||||| |||||||||||||
Sbjct: 78034 ttcatcaacatgtcgcgggacttcgggtactactggct 77997
>gb|AACV01021859.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg021859, whole
genome shotgun sequence
Length = 9795
Score = 135 bits (68), Expect = 5e-029
Identities = 137/160 (85%)
Strand = Plus / Plus
Query: 344 tgctacttcatggtgcgcctccatcctggcttcgagcactacatcttcttcgtcttgaac 403
||||||||||||||||||||||| || |||||| ||||||| ||||||||||| | |
Sbjct: 5193 tgctacttcatggtgcgcctccacccgggcttcacgcactacctcttcttcgtcctctgc 5252
Query: 404 ctgtacgccagcgttacggtggtcgagagcttgatgatggcgattgccagtgtcattcca 463
|| ||||| ||||| || || |||||||||||||||||||| |||||||||||||| ||
Sbjct: 5253 ctctacgcaagcgtcaccgtcgtcgagagcttgatgatggccattgccagtgtcatcccc 5312
Query: 464 aatttcctcatgggtatcatcataggggccgggattcagg 503
|| ||||||||||| |||||||| || || || |||||||
Sbjct: 5313 aacttcctcatgggcatcatcatcggtgcaggaattcagg 5352
Score = 117 bits (59), Expect = 1e-023
Identities = 170/207 (82%)
Strand = Plus / Plus
Query: 606 tgcagggccagtgccagaacgacatgaagggcctcgcggtcgacaaccaggacccggacc 665
||||||| |||| |||||||||| |||||||||| | | |||||||||||||| || |
Sbjct: 6280 tgcagggtcagtaccagaacgacctgaagggcctggtgttcgacaaccaggacgacgagc 6339
Query: 666 aacccaagatccccggggacttcatcctcaagtacatcttccagatcaacgtggaccgtt 725
|||||||||||||| || | |||||| || || | ||||||||| ||||| ||| |
Sbjct: 6340 tccccaagatccccggcgagtacatcctggagaacgtgttccagatcgacgtgagccgat 6399
Query: 726 ccaagtggatcgacctgtcggtcattttcagcatgatcttcatctaccgcatcctcttct 785
|||||||| | ||||| | || | |||||||||||||||||||||||| |||||||||
Sbjct: 6400 ccaagtggctggacctcgccgtgctcttcagcatgatcttcatctaccgcctcctcttct 6459
Query: 786 tcctcatgatcaagatcaacgaggacg 812
|| |||||||||| ||| ||||||||
Sbjct: 6460 tcgccatgatcaaggtcagcgaggacg 6486
Score = 87.7 bits (44), Expect = 1e-014
Identities = 95/112 (84%)
Strand = Plus / Plus
Query: 500 cagggaatattcatgctggtctctggctacttcagacttccatacgacatcccgaagccc 559
||||| |||||||||||||| || || |||||||| ||||| | |||||||| |||||
Sbjct: 5560 caggggatattcatgctggtttcaggatacttcaggcttccccatgacatcccaaagcca 5619
Query: 560 ttttggagataccccatgcagtacatcagcttccactactgggcactgcagg 611
|| ||||| || |||||| |||||||||||||||||||||||| ||||||
Sbjct: 5620 ttctggaggtatcccatgtcatacatcagcttccactactgggcattgcagg 5671
Score = 56.0 bits (28), Expect = 4e-005
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 164 ttcgtctttgggttcgttacgttcatgtccattggaggattcccttcgttcgttgaagaa 223
|||||||| || || || ||||||||||| |||||||||||||| || || || |||||
Sbjct: 4921 ttcgtcttcggctttgtcacgttcatgtcgattggaggattcccgtcttttgtggaagac 4980
Query: 224 atgaaggt 231
||||||||
Sbjct: 4981 atgaaggt 4988
Score = 52.0 bits (26), Expect = 6e-004
Identities = 36/38 (94%), Gaps = 1/38 (2%)
Strand = Plus / Plus
Query: 25 ttcatcaacatgtcgcgggactt-tggtactactggct 61
||||||||||||||||||||||| |||||||||||||
Sbjct: 4652 ttcatcaacatgtcgcgggacttcgggtactactggct 4689
>ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chromosome 10
Length = 4609300
Score = 135 bits (68), Expect = 5e-029
Identities = 137/160 (85%)
Strand = Plus / Plus
Query: 344 tgctacttcatggtgcgcctccatcctggcttcgagcactacatcttcttcgtcttgaac 403
||||||||||||||||||||||| || |||||| ||||||| ||||||||||| | |
Sbjct: 192533 tgctacttcatggtgcgcctccacccgggcttcacgcactacctcttcttcgtcctctgc 192592
Query: 404 ctgtacgccagcgttacggtggtcgagagcttgatgatggcgattgccagtgtcattcca 463
|| ||||| ||||| || || |||||||||||||||||||| |||||||||||||| ||
Sbjct: 192593 ctctacgcaagcgtcaccgtcgtcgagagcttgatgatggccattgccagtgtcatcccc 192652
Query: 464 aatttcctcatgggtatcatcataggggccgggattcagg 503
|| ||||||||||| |||||||| || || || |||||||
Sbjct: 192653 aacttcctcatgggcatcatcatcggtgcaggaattcagg 192692
Score = 117 bits (59), Expect = 1e-023
Identities = 170/207 (82%)
Strand = Plus / Plus
Query: 606 tgcagggccagtgccagaacgacatgaagggcctcgcggtcgacaaccaggacccggacc 665
||||||| |||| |||||||||| |||||||||| | | |||||||||||||| || |
Sbjct: 193620 tgcagggtcagtaccagaacgacctgaagggcctggtgttcgacaaccaggacgacgagc 193679
Query: 666 aacccaagatccccggggacttcatcctcaagtacatcttccagatcaacgtggaccgtt 725
|||||||||||||| || | |||||| || || | ||||||||| ||||| ||| |
Sbjct: 193680 tccccaagatccccggcgagtacatcctggagaacgtgttccagatcgacgtgagccgat 193739
Query: 726 ccaagtggatcgacctgtcggtcattttcagcatgatcttcatctaccgcatcctcttct 785
|||||||| | ||||| | || | |||||||||||||||||||||||| |||||||||
Sbjct: 193740 ccaagtggctggacctcgccgtgctcttcagcatgatcttcatctaccgcctcctcttct 193799
Query: 786 tcctcatgatcaagatcaacgaggacg 812
|| |||||||||| ||| ||||||||
Sbjct: 193800 tcgccatgatcaaggtcagcgaggacg 193826
Score = 87.7 bits (44), Expect = 1e-014
Identities = 95/112 (84%)
Strand = Plus / Plus
Query: 500 cagggaatattcatgctggtctctggctacttcagacttccatacgacatcccgaagccc 559
||||| |||||||||||||| || || |||||||| ||||| | |||||||| |||||
Sbjct: 192900 caggggatattcatgctggtttcaggatacttcaggcttccccatgacatcccaaagcca 192959
Query: 560 ttttggagataccccatgcagtacatcagcttccactactgggcactgcagg 611
|| ||||| || |||||| |||||||||||||||||||||||| ||||||
Sbjct: 192960 ttctggaggtatcccatgtcatacatcagcttccactactgggcattgcagg 193011
Score = 56.0 bits (28), Expect = 4e-005
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 164 ttcgtctttgggttcgttacgttcatgtccattggaggattcccttcgttcgttgaagaa 223
|||||||| || || || ||||||||||| |||||||||||||| || || || |||||
Sbjct: 192261 ttcgtcttcggctttgtcacgttcatgtcgattggaggattcccgtcttttgtggaagac 192320
Query: 224 atgaaggt 231
||||||||
Sbjct: 192321 atgaaggt 192328
Score = 52.0 bits (26), Expect = 6e-004
Identities = 36/38 (94%), Gaps = 1/38 (2%)
Strand = Plus / Plus
Query: 25 ttcatcaacatgtcgcgggactt-tggtactactggct 61
||||||||||||||||||||||| |||||||||||||
Sbjct: 191992 ttcatcaacatgtcgcgggacttcgggtactactggct 192029
>gb|CH401254.1| Oryza sativa (japonica cultivar-group) chromosome 10 scaffold000091 genomic
scaffold, whole genome shotgun sequence
Length = 10615099
Score = 135 bits (68), Expect = 5e-029
Identities = 137/160 (85%)
Strand = Plus / Plus
Query: 344 tgctacttcatggtgcgcctccatcctggcttcgagcactacatcttcttcgtcttgaac 403
||||||||||||||||||||||| || |||||| ||||||| ||||||||||| | |
Sbjct: 6254955 tgctacttcatggtgcgcctccacccgggcttcacgcactacctcttcttcgtcctctgc 6255014
Query: 404 ctgtacgccagcgttacggtggtcgagagcttgatgatggcgattgccagtgtcattcca 463
|| ||||| ||||| || || |||||||||||||||||||| |||||||||||||| ||
Sbjct: 6255015 ctctacgcaagcgtcaccgtcgtcgagagcttgatgatggccattgccagtgtcatcccc 6255074
Query: 464 aatttcctcatgggtatcatcataggggccgggattcagg 503
|| ||||||||||| |||||||| || || || |||||||
Sbjct: 6255075 aacttcctcatgggcatcatcatcggtgcaggaattcagg 6255114
Score = 117 bits (59), Expect = 1e-023
Identities = 170/207 (82%)
Strand = Plus / Plus
Query: 606 tgcagggccagtgccagaacgacatgaagggcctcgcggtcgacaaccaggacccggacc 665
||||||| |||| |||||||||| |||||||||| | | |||||||||||||| || |
Sbjct: 6256042 tgcagggtcagtaccagaacgacctgaagggcctggtgttcgacaaccaggacgacgagc 6256101
Query: 666 aacccaagatccccggggacttcatcctcaagtacatcttccagatcaacgtggaccgtt 725
|||||||||||||| || | |||||| || || | ||||||||| ||||| ||| |
Sbjct: 6256102 tccccaagatccccggcgagtacatcctggagaacgtgttccagatcgacgtgagccgat 6256161
Query: 726 ccaagtggatcgacctgtcggtcattttcagcatgatcttcatctaccgcatcctcttct 785
|||||||| | ||||| | || | |||||||||||||||||||||||| |||||||||
Sbjct: 6256162 ccaagtggctggacctcgccgtgctcttcagcatgatcttcatctaccgcctcctcttct 6256221
Query: 786 tcctcatgatcaagatcaacgaggacg 812
|| |||||||||| ||| ||||||||
Sbjct: 6256222 tcgccatgatcaaggtcagcgaggacg 6256248
Score = 87.7 bits (44), Expect = 1e-014
Identities = 95/112 (84%)
Strand = Plus / Plus
Query: 500 cagggaatattcatgctggtctctggctacttcagacttccatacgacatcccgaagccc 559
||||| |||||||||||||| || || |||||||| ||||| | |||||||| |||||
Sbjct: 6255322 caggggatattcatgctggtttcaggatacttcaggcttccccatgacatcccaaagcca 6255381
Query: 560 ttttggagataccccatgcagtacatcagcttccactactgggcactgcagg 611
|| ||||| || |||||| |||||||||||||||||||||||| ||||||
Sbjct: 6255382 ttctggaggtatcccatgtcatacatcagcttccactactgggcattgcagg 6255433
Score = 56.0 bits (28), Expect = 4e-005
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 164 ttcgtctttgggttcgttacgttcatgtccattggaggattcccttcgttcgttgaagaa 223
|||||||| || || || ||||||||||| |||||||||||||| || || || |||||
Sbjct: 6254683 ttcgtcttcggctttgtcacgttcatgtcgattggaggattcccgtcttttgtggaagac 6254742
Query: 224 atgaaggt 231
||||||||
Sbjct: 6254743 atgaaggt 6254750
Score = 52.0 bits (26), Expect = 6e-004
Identities = 36/38 (94%), Gaps = 1/38 (2%)
Strand = Plus / Plus
Query: 25 ttcatcaacatgtcgcgggactt-tggtactactggct 61
||||||||||||||||||||||| |||||||||||||
Sbjct: 6254414 ttcatcaacatgtcgcgggacttcgggtactactggct 6254451
>gb|CM000147.1| Oryza sativa (japonica cultivar-group) chromosome 10, whole genome shotgun
sequence
Length = 21480893
Score = 135 bits (68), Expect = 5e-029
Identities = 137/160 (85%)
Strand = Plus / Plus
Query: 344 tgctacttcatggtgcgcctccatcctggcttcgagcactacatcttcttcgtcttgaac 403
||||||||||||||||||||||| || |||||| ||||||| ||||||||||| | |
Sbjct: 17120749 tgctacttcatggtgcgcctccacccgggcttcacgcactacctcttcttcgtcctctgc 17120808
Query: 404 ctgtacgccagcgttacggtggtcgagagcttgatgatggcgattgccagtgtcattcca 463
|| ||||| ||||| || || |||||||||||||||||||| |||||||||||||| ||
Sbjct: 17120809 ctctacgcaagcgtcaccgtcgtcgagagcttgatgatggccattgccagtgtcatcccc 17120868
Query: 464 aatttcctcatgggtatcatcataggggccgggattcagg 503
|| ||||||||||| |||||||| || || || |||||||
Sbjct: 17120869 aacttcctcatgggcatcatcatcggtgcaggaattcagg 17120908
Score = 117 bits (59), Expect = 1e-023
Identities = 170/207 (82%)
Strand = Plus / Plus
Query: 606 tgcagggccagtgccagaacgacatgaagggcctcgcggtcgacaaccaggacccggacc 665
||||||| |||| |||||||||| |||||||||| | | |||||||||||||| || |
Sbjct: 17121836 tgcagggtcagtaccagaacgacctgaagggcctggtgttcgacaaccaggacgacgagc 17121895
Query: 666 aacccaagatccccggggacttcatcctcaagtacatcttccagatcaacgtggaccgtt 725
|||||||||||||| || | |||||| || || | ||||||||| ||||| ||| |
Sbjct: 17121896 tccccaagatccccggcgagtacatcctggagaacgtgttccagatcgacgtgagccgat 17121955
Query: 726 ccaagtggatcgacctgtcggtcattttcagcatgatcttcatctaccgcatcctcttct 785
|||||||| | ||||| | || | |||||||||||||||||||||||| |||||||||
Sbjct: 17121956 ccaagtggctggacctcgccgtgctcttcagcatgatcttcatctaccgcctcctcttct 17122015
Query: 786 tcctcatgatcaagatcaacgaggacg 812
|| |||||||||| ||| ||||||||
Sbjct: 17122016 tcgccatgatcaaggtcagcgaggacg 17122042
Score = 87.7 bits (44), Expect = 1e-014
Identities = 95/112 (84%)
Strand = Plus / Plus
Query: 500 cagggaatattcatgctggtctctggctacttcagacttccatacgacatcccgaagccc 559
||||| |||||||||||||| || || |||||||| ||||| | |||||||| |||||
Sbjct: 17121116 caggggatattcatgctggtttcaggatacttcaggcttccccatgacatcccaaagcca 17121175
Query: 560 ttttggagataccccatgcagtacatcagcttccactactgggcactgcagg 611
|| ||||| || |||||| |||||||||||||||||||||||| ||||||
Sbjct: 17121176 ttctggaggtatcccatgtcatacatcagcttccactactgggcattgcagg 17121227
Score = 56.0 bits (28), Expect = 4e-005
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 164 ttcgtctttgggttcgttacgttcatgtccattggaggattcccttcgttcgttgaagaa 223
|||||||| || || || ||||||||||| |||||||||||||| || || || |||||
Sbjct: 17120477 ttcgtcttcggctttgtcacgttcatgtcgattggaggattcccgtcttttgtggaagac 17120536
Query: 224 atgaaggt 231
||||||||
Sbjct: 17120537 atgaaggt 17120544
Score = 52.0 bits (26), Expect = 6e-004
Identities = 36/38 (94%), Gaps = 1/38 (2%)
Strand = Plus / Plus
Query: 25 ttcatcaacatgtcgcgggactt-tggtactactggct 61
||||||||||||||||||||||| |||||||||||||
Sbjct: 17120208 ttcatcaacatgtcgcgggacttcgggtactactggct 17120245
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
sequence
Length = 22685906
Score = 135 bits (68), Expect = 5e-029
Identities = 137/160 (85%)
Strand = Plus / Plus
Query: 344 tgctacttcatggtgcgcctccatcctggcttcgagcactacatcttcttcgtcttgaac 403
||||||||||||||||||||||| || |||||| ||||||| ||||||||||| | |
Sbjct: 18273677 tgctacttcatggtgcgcctccacccgggcttcacgcactacctcttcttcgtcctctgc 18273736
Query: 404 ctgtacgccagcgttacggtggtcgagagcttgatgatggcgattgccagtgtcattcca 463
|| ||||| ||||| || || |||||||||||||||||||| |||||||||||||| ||
Sbjct: 18273737 ctctacgcaagcgtcaccgtcgtcgagagcttgatgatggccattgccagtgtcatcccc 18273796
Query: 464 aatttcctcatgggtatcatcataggggccgggattcagg 503
|| ||||||||||| |||||||| || || || |||||||
Sbjct: 18273797 aacttcctcatgggcatcatcatcggtgcaggaattcagg 18273836
Score = 117 bits (59), Expect = 1e-023
Identities = 170/207 (82%)
Strand = Plus / Plus
Query: 606 tgcagggccagtgccagaacgacatgaagggcctcgcggtcgacaaccaggacccggacc 665
||||||| |||| |||||||||| |||||||||| | | |||||||||||||| || |
Sbjct: 18274764 tgcagggtcagtaccagaacgacctgaagggcctggtgttcgacaaccaggacgacgagc 18274823
Query: 666 aacccaagatccccggggacttcatcctcaagtacatcttccagatcaacgtggaccgtt 725
|||||||||||||| || | |||||| || || | ||||||||| ||||| ||| |
Sbjct: 18274824 tccccaagatccccggcgagtacatcctggagaacgtgttccagatcgacgtgagccgat 18274883
Query: 726 ccaagtggatcgacctgtcggtcattttcagcatgatcttcatctaccgcatcctcttct 785
|||||||| | ||||| | || | |||||||||||||||||||||||| |||||||||
Sbjct: 18274884 ccaagtggctggacctcgccgtgctcttcagcatgatcttcatctaccgcctcctcttct 18274943
Query: 786 tcctcatgatcaagatcaacgaggacg 812
|| |||||||||| ||| ||||||||
Sbjct: 18274944 tcgccatgatcaaggtcagcgaggacg 18274970
Score = 87.7 bits (44), Expect = 1e-014
Identities = 95/112 (84%)
Strand = Plus / Plus
Query: 500 cagggaatattcatgctggtctctggctacttcagacttccatacgacatcccgaagccc 559
||||| |||||||||||||| || || |||||||| ||||| | |||||||| |||||
Sbjct: 18274044 caggggatattcatgctggtttcaggatacttcaggcttccccatgacatcccaaagcca 18274103
Query: 560 ttttggagataccccatgcagtacatcagcttccactactgggcactgcagg 611
|| ||||| || |||||| |||||||||||||||||||||||| ||||||
Sbjct: 18274104 ttctggaggtatcccatgtcatacatcagcttccactactgggcattgcagg 18274155
Score = 56.0 bits (28), Expect = 4e-005
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 164 ttcgtctttgggttcgttacgttcatgtccattggaggattcccttcgttcgttgaagaa 223
|||||||| || || || ||||||||||| |||||||||||||| || || || |||||
Sbjct: 18273405 ttcgtcttcggctttgtcacgttcatgtcgattggaggattcccgtcttttgtggaagac 18273464
Query: 224 atgaaggt 231
||||||||
Sbjct: 18273465 atgaaggt 18273472
Score = 52.0 bits (26), Expect = 6e-004
Identities = 36/38 (94%), Gaps = 1/38 (2%)
Strand = Plus / Plus
Query: 25 ttcatcaacatgtcgcgggactt-tggtactactggct 61
||||||||||||||||||||||| |||||||||||||
Sbjct: 18273136 ttcatcaacatgtcgcgggacttcgggtactactggct 18273173
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
Length = 22698374
Score = 135 bits (68), Expect = 5e-029
Identities = 137/160 (85%)
Strand = Plus / Plus
Query: 344 tgctacttcatggtgcgcctccatcctggcttcgagcactacatcttcttcgtcttgaac 403
||||||||||||||||||||||| || |||||| ||||||| ||||||||||| | |
Sbjct: 18282930 tgctacttcatggtgcgcctccacccgggcttcacgcactacctcttcttcgtcctctgc 18282989
Query: 404 ctgtacgccagcgttacggtggtcgagagcttgatgatggcgattgccagtgtcattcca 463
|| ||||| ||||| || || |||||||||||||||||||| |||||||||||||| ||
Sbjct: 18282990 ctctacgcaagcgtcaccgtcgtcgagagcttgatgatggccattgccagtgtcatcccc 18283049
Query: 464 aatttcctcatgggtatcatcataggggccgggattcagg 503
|| ||||||||||| |||||||| || || || |||||||
Sbjct: 18283050 aacttcctcatgggcatcatcatcggtgcaggaattcagg 18283089
Score = 117 bits (59), Expect = 1e-023
Identities = 170/207 (82%)
Strand = Plus / Plus
Query: 606 tgcagggccagtgccagaacgacatgaagggcctcgcggtcgacaaccaggacccggacc 665
||||||| |||| |||||||||| |||||||||| | | |||||||||||||| || |
Sbjct: 18284017 tgcagggtcagtaccagaacgacctgaagggcctggtgttcgacaaccaggacgacgagc 18284076
Query: 666 aacccaagatccccggggacttcatcctcaagtacatcttccagatcaacgtggaccgtt 725
|||||||||||||| || | |||||| || || | ||||||||| ||||| ||| |
Sbjct: 18284077 tccccaagatccccggcgagtacatcctggagaacgtgttccagatcgacgtgagccgat 18284136
Query: 726 ccaagtggatcgacctgtcggtcattttcagcatgatcttcatctaccgcatcctcttct 785
|||||||| | ||||| | || | |||||||||||||||||||||||| |||||||||
Sbjct: 18284137 ccaagtggctggacctcgccgtgctcttcagcatgatcttcatctaccgcctcctcttct 18284196
Query: 786 tcctcatgatcaagatcaacgaggacg 812
|| |||||||||| ||| ||||||||
Sbjct: 18284197 tcgccatgatcaaggtcagcgaggacg 18284223
Score = 87.7 bits (44), Expect = 1e-014
Identities = 95/112 (84%)
Strand = Plus / Plus
Query: 500 cagggaatattcatgctggtctctggctacttcagacttccatacgacatcccgaagccc 559
||||| |||||||||||||| || || |||||||| ||||| | |||||||| |||||
Sbjct: 18283297 caggggatattcatgctggtttcaggatacttcaggcttccccatgacatcccaaagcca 18283356
Query: 560 ttttggagataccccatgcagtacatcagcttccactactgggcactgcagg 611
|| ||||| || |||||| |||||||||||||||||||||||| ||||||
Sbjct: 18283357 ttctggaggtatcccatgtcatacatcagcttccactactgggcattgcagg 18283408
Score = 56.0 bits (28), Expect = 4e-005
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 164 ttcgtctttgggttcgttacgttcatgtccattggaggattcccttcgttcgttgaagaa 223
|||||||| || || || ||||||||||| |||||||||||||| || || || |||||
Sbjct: 18282658 ttcgtcttcggctttgtcacgttcatgtcgattggaggattcccgtcttttgtggaagac 18282717
Query: 224 atgaaggt 231
||||||||
Sbjct: 18282718 atgaaggt 18282725
Score = 52.0 bits (26), Expect = 6e-004
Identities = 36/38 (94%), Gaps = 1/38 (2%)
Strand = Plus / Plus
Query: 25 ttcatcaacatgtcgcgggactt-tggtactactggct 61
||||||||||||||||||||||| |||||||||||||
Sbjct: 18282389 ttcatcaacatgtcgcgggacttcgggtactactggct 18282426
>gb|CB649273.1|CB649273 OSJNEb13B21.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb13B21 5', mRNA sequence
Length = 823
Score = 115 bits (58), Expect = 5e-023
Identities = 131/154 (85%), Gaps = 2/154 (1%)
Strand = Plus / Plus
Query: 5 gcaccctgaccaancgctccttcatcaacatgtcgcgggactttgg-tactactggctna 63
|||| |||||||| |||||||||||||||||||| ||||||| || || |||||||| |
Sbjct: 663 gcacactgaccaagcgctccttcatcaacatgtcaagggacttcgggtattactggctga 722
Query: 64 g-ctcntnatttacctcctcgtcaccgtttgcatcggcacgatctacctggacgtcggca 122
| ||| | || || |||||||| ||||| ||||| ||||| |||||| ||||||||||
Sbjct: 723 ggctcctcatctatctcctcgtgaccgtctgcattggcaccatctactatgacgtcggca 782
Query: 123 ccaaatacacatccatcctggccagggctgcctg 156
|||| ||||||||||||||| | |||||||||||
Sbjct: 783 ccaagtacacatccatcctgactagggctgcctg 816
>gb|AQ867058.1|AQ867058 nbeb0029P19r CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0029P19r, DNA sequence
Length = 495
Score = 111 bits (56), Expect = 8e-022
Identities = 147/176 (83%), Gaps = 1/176 (0%)
Strand = Plus / Plus
Query: 327 tcttgtcgggaaccatatgctacttcatggtgcgcc-tccatcctggcttcgagcactac 385
||||||| || ||||||||||||||||||||||||| | || || || ||| ||||||
Sbjct: 233 tcttgtcagggaccatatgctacttcatggtgcgcccttcacccaggtttctcccactac 292
Query: 386 atcttcttcgtcttgaacctgtacgccagcgttacggtggtcgagagcttgatgatggcg 445
||||||||||| | ||| | ||||||||||| || | ||| ||||||||||| |||||
Sbjct: 293 atcttcttcgttctcaacttctacgccagcgtaactggggttgagagcttgataatggcc 352
Query: 446 attgccagtgtcattccaaatttcctcatgggtatcatcataggggccgggattca 501
||||| ||||| || || |||||||||||||| ||||| ||||| || ||||||||
Sbjct: 353 attgcaagtgtaatccctaatttcctcatggggatcattataggagctgggattca 408
>dbj|AG208304.1| Oryza sativa (japonica cultivar-group) DNA, clone:NE2030_0_504_1A,
3' flanking sequence of Tos17 insertion in rice strain
NE2030, genomic survey sequence
Length = 570
Score = 111 bits (56), Expect = 8e-022
Identities = 101/116 (87%)
Strand = Plus / Minus
Query: 344 tgctacttcatggtgcgcctccatcctggcttcgagcactacatcttcttcgtcttgaac 403
||||||||||||||||||||||| || |||||| ||||||| ||||||||||| | |
Sbjct: 119 tgctacttcatggtgcgcctccacccgggcttcacgcactacctcttcttcgtcctctgc 60
Query: 404 ctgtacgccagcgttacggtggtcgagagcttgatgatggcgattgccagtgtcat 459
|| ||||| ||||| || || |||||||||||||||||||| ||||||||||||||
Sbjct: 59 ctctacgcaagcgtcaccgtcgtcgagagcttgatgatggccattgccagtgtcat 4
Score = 56.0 bits (28), Expect = 4e-005
Identities = 58/68 (85%)
Strand = Plus / Minus
Query: 164 ttcgtctttgggttcgttacgttcatgtccattggaggattcccttcgttcgttgaagaa 223
|||||||| || || || ||||||||||| |||||||||||||| || || || |||||
Sbjct: 391 ttcgtcttcggctttgtcacgttcatgtcgattggaggattcccgtcttttgtggaagac 332
Query: 224 atgaaggt 231
||||||||
Sbjct: 331 atgaaggt 324
>dbj|AK101159.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033027K17, full
insert sequence
Length = 1627
Score = 99.6 bits (50), Expect = 3e-018
Identities = 117/138 (84%), Gaps = 2/138 (1%)
Strand = Plus / Minus
Query: 5 gcaccctgaccaancgctccttcatcaacatgtcgcgggactttgg-tactactggctna 63
|||| |||||||| |||||||||||||||||||| ||||||| || || |||||||| |
Sbjct: 1257 gcacactgaccaagcgctccttcatcaacatgtcaagggacttcgggtattactggctga 1198
Query: 64 g-ctcntnatttacctcctcgtcaccgtttgcatcggcacgatctacctggacgtcggca 122
| ||| | || || |||||||| ||||| ||||| ||||| |||||| ||||||||||
Sbjct: 1197 ggctcctcatctatctcctcgtgaccgtctgcattggcaccatctactatgacgtcggca 1138
Query: 123 ccaaatacacatccatcc 140
|||| |||||||||||||
Sbjct: 1137 ccaagtacacatccatcc 1120
>dbj|AK107445.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-128-B10, full
insert sequence
Length = 1874
Score = 99.6 bits (50), Expect = 3e-018
Identities = 117/138 (84%), Gaps = 2/138 (1%)
Strand = Plus / Minus
Query: 5 gcaccctgaccaancgctccttcatcaacatgtcgcgggactttgg-tactactggctna 63
|||| |||||||| |||||||||||||||||||| ||||||| || || |||||||| |
Sbjct: 548 gcacactgaccaagcgctccttcatcaacatgtcaagggacttcgggtattactggctga 489
Query: 64 g-ctcntnatttacctcctcgtcaccgtttgcatcggcacgatctacctggacgtcggca 122
| ||| | || || |||||||| ||||| ||||| ||||| |||||| ||||||||||
Sbjct: 488 ggctcctcatctatctcctcgtgaccgtctgcattggcaccatctactatgacgtcggca 429
Query: 123 ccaaatacacatccatcc 140
|||| |||||||||||||
Sbjct: 428 ccaagtacacatccatcc 411
>gb|AZ046666.1|AZ046666 nbeb0095E03f CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone OSJNBb0095E03f, DNA
sequence
Length = 456
Score = 87.7 bits (44), Expect = 1e-014
Identities = 95/112 (84%)
Strand = Plus / Plus
Query: 500 cagggaatattcatgctggtctctggctacttcagacttccatacgacatcccgaagccc 559
||||| |||||||||||||| || || |||||||| ||||| | |||||||| |||||
Sbjct: 223 caggggatattcatgctggtttcaggatacttcaggcttccccatgacatcccaaagcca 282
Query: 560 ttttggagataccccatgcagtacatcagcttccactactgggcactgcagg 611
|| ||||| || |||||| |||||||||||||||||||||||| ||||||
Sbjct: 283 ttctggaggtatcccatgtcatacatcagcttccactactgggcattgcagg 334
>dbj|AG022223.1| Oryza sativa (japonica cultivar-group) DNA, clone:T05012T, 3'
flanking sequence of Tos17 insertion in rice strain
NC2467, genomic survey sequence
Length = 444
Score = 87.7 bits (44), Expect = 1e-014
Identities = 95/112 (84%)
Strand = Plus / Plus
Query: 500 cagggaatattcatgctggtctctggctacttcagacttccatacgacatcccgaagccc 559
||||| |||||||||||||| || || |||||||| ||||| | |||||||| |||||
Sbjct: 262 caggggatattcatgctggtttcaggatacttcaggcttccccatgacatcccaaagcca 321
Query: 560 ttttggagataccccatgcagtacatcagcttccactactgggcactgcagg 611
|| ||||| || |||||| |||||||||||||||||||||||| ||||||
Sbjct: 322 ttctggaggtatcccatgtcatacatcagcttccactactgggcattgcagg 373
Score = 44.1 bits (22), Expect = 0.15
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 450 ccagtgtcattccaaatttcctcatgggtatcatcataggggccgggattcagg 503
|||||||||| || || ||||||||||| |||||||| || || || |||||||
Sbjct: 1 ccagtgtcatccccaacttcctcatgggcatcatcatcggtgcaggaattcagg 54
>dbj|AG205510.1| Oryza sativa (japonica cultivar-group) DNA, clone:T06602T, 3'
flanking sequence of Tos17 insertion in rice strain
NC2736, genomic survey sequence
Length = 437
Score = 87.7 bits (44), Expect = 1e-014
Identities = 95/112 (84%)
Strand = Plus / Plus
Query: 500 cagggaatattcatgctggtctctggctacttcagacttccatacgacatcccgaagccc 559
||||| |||||||||||||| || || |||||||| ||||| | |||||||| |||||
Sbjct: 262 caggggatattcatgctggtttcaggatacttcaggcttccccatgacatcccaaagcca 321
Query: 560 ttttggagataccccatgcagtacatcagcttccactactgggcactgcagg 611
|| ||||| || |||||| |||||||||||||||||||||||| ||||||
Sbjct: 322 ttctggaggtatcccatgtcatacatcagcttccactactgggcattgcagg 373
Score = 44.1 bits (22), Expect = 0.15
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 450 ccagtgtcattccaaatttcctcatgggtatcatcataggggccgggattcagg 503
|||||||||| || || ||||||||||| |||||||| || || || |||||||
Sbjct: 1 ccagtgtcatccccaacttcctcatgggcatcatcatcggtgcaggaattcagg 54
>gb|CB637206.1|CB637206 OSJNEa03I01.r OSJNEa Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEa03I01 3', mRNA sequence
Length = 406
Score = 85.7 bits (43), Expect = 4e-014
Identities = 49/51 (96%)
Strand = Plus / Minus
Query: 749 attttcagcatgatcttcatctaccgcatcctcttcttcctcatgatcaag 799
||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 379 attttcagcatgatcttcatctaccgcattctgttcttcctcatgatcaag 329
>gb|CB647022.1|CB647022 OSJNEb09M07.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb09M07 3', mRNA sequence
Length = 610
Score = 73.8 bits (37), Expect = 2e-010
Identities = 46/49 (93%)
Strand = Plus / Minus
Query: 751 tttcagcatgatcttcatctaccgcatcctcttcttcctcatgatcaag 799
|||||||||||| |||||||||||||| || ||||||||||||||||||
Sbjct: 604 tttcagcatgatgttcatctaccgcattctgttcttcctcatgatcaag 556
>dbj|AG020765.1| Oryza sativa (japonica cultivar-group) DNA, clone:H0070_5_105_1A,
3' flanking sequence of Tos17 insertion in rice strain
H0070, genomic survey sequence
Length = 568
Score = 52.0 bits (26), Expect = 6e-004
Identities = 36/38 (94%), Gaps = 1/38 (2%)
Strand = Plus / Plus
Query: 25 ttcatcaacatgtcgcgggactt-tggtactactggct 61
||||||||||||||||||||||| |||||||||||||
Sbjct: 264 ttcatcaacatgtcgcgggacttcgggtactactggct 301
>dbj|AG024277.1| Oryza sativa (japonica cultivar-group) DNA,
clone:ND4017_0_402_1A, 3' flanking sequence of Tos17
insertion in rice strain ND4017, genomic survey
sequence
Length = 652
Score = 52.0 bits (26), Expect = 6e-004
Identities = 36/38 (94%), Gaps = 1/38 (2%)
Strand = Plus / Minus
Query: 25 ttcatcaacatgtcgcgggactt-tggtactactggct 61
||||||||||||||||||||||| |||||||||||||
Sbjct: 62 ttcatcaacatgtcgcgggacttcgggtactactggct 25
>gb|C72303.1|C72303 C72303 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E1402_1A, mRNA sequence
Length = 333
Score = 48.1 bits (24), Expect = 0.010
Identities = 34/36 (94%), Gaps = 1/36 (2%)
Strand = Plus / Plus
Query: 27 catcaacatgtcgcgggactt-tggtactactggct 61
||||||||||||||||||||| |||||||||||||
Sbjct: 273 catcaacatgtcgcgggacttcgggtactactggct 308
>emb|BX569687.1|CNS09SBM Oryza sativa (japonica cultivar-group) chromosome 12 clone
OSJNBb0092K12, *** SEQUENCING IN PROGRESS ***
Length = 129539
Score = 44.1 bits (22), Expect = 0.15
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 467 ttcctcatgggtatcatcataggggccgggattcaggg 504
||||||||||| |||||||| || |||||||| |||||
Sbjct: 59268 ttcctcatgggaatcatcatcggtgccgggatacaggg 59231
>dbj|AK067639.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013108J11, full
insert sequence
Length = 2643
Score = 44.1 bits (22), Expect = 0.15
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 467 ttcctcatgggtatcatcataggggccgggattcaggg 504
||||||||||| |||||||| || |||||||| |||||
Sbjct: 1816 ttcctcatgggaatcatcatcggtgccgggatacaggg 1853
Score = 44.1 bits (22), Expect = 0.15
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 185 ttcatgtccattggaggattcccttcgttcgttgaaga 222
|||||| | ||||||||||||||||| ||||| |||||
Sbjct: 1534 ttcatggcaattggaggattcccttctttcgtagaaga 1571
>dbj|AK104709.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-E10, full
insert sequence
Length = 1185
Score = 44.1 bits (22), Expect = 0.15
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 467 ttcctcatgggtatcatcataggggccgggattcaggg 504
||||||||||| |||||||| || |||||||| |||||
Sbjct: 589 ttcctcatgggaatcatcatcggtgccgggatacaggg 626
>emb|AL844499.5|CNS08CAW Oryza sativa chromosome 12, . BAC OSJNBb0092K12 of library OSJNBb from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 129540
Score = 44.1 bits (22), Expect = 0.15
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 467 ttcctcatgggtatcatcataggggccgggattcaggg 504
||||||||||| |||||||| || |||||||| |||||
Sbjct: 59269 ttcctcatgggaatcatcatcggtgccgggatacaggg 59232
>ref|NT_107147.1| Oryza sativa (japonica cultivar-group)
Length = 1769098
Score = 44.1 bits (22), Expect = 0.15
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 467 ttcctcatgggtatcatcataggggccgggattcaggg 504
||||||||||| |||||||| || |||||||| |||||
Sbjct: 558706 ttcctcatgggaatcatcatcggtgccgggatacaggg 558669
>gb|AACV01024542.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg024542, whole
genome shotgun sequence
Length = 25392
Score = 44.1 bits (22), Expect = 0.15
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 467 ttcctcatgggtatcatcataggggccgggattcaggg 504
||||||||||| |||||||| || |||||||| |||||
Sbjct: 8741 ttcctcatgggaatcatcatcggtgccgggatacaggg 8704
>gb|CH401274.1| Oryza sativa (japonica cultivar-group) chromosome 12 scaffold000111 genomic
scaffold, whole genome shotgun sequence
Length = 3984395
Score = 44.1 bits (22), Expect = 0.15
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 467 ttcctcatgggtatcatcataggggccgggattcaggg 504
||||||||||| |||||||| || |||||||| |||||
Sbjct: 2040561 ttcctcatgggaatcatcatcggtgccgggatacaggg 2040524
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,237,926
Number of Sequences: 438736
Number of extensions: 1237926
Number of successful extensions: 7313
Number of sequences better than 0.5: 53
Number of HSP's better than 0.5 without gapping: 52
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 6966
Number of HSP's gapped (non-prelim): 282
length of query: 1030
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1009
effective length of database: 2,791,206,460
effective search space: 2816327318140
effective search space used: 2816327318140
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)