BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3866391.2.1
(613 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AQ870215.1|AQ870215 nbeb0036N08f CUGI Rice BAC Library (... 48 0.006
dbj|AP002968.2| Oryza sativa (japonica cultivar-group) geno... 48 0.006
dbj|AP003204.3| Oryza sativa (japonica cultivar-group) geno... 48 0.006
gb|AACV01001144.1| Oryza sativa (japonica cultivar-group) c... 48 0.006
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 48 0.006
ref|NM_193877.1| Oryza sativa (japonica cultivar-group), p... 48 0.006
ref|NT_079947.2| Oryza sativa (japonica cultivar-group) 48 0.006
gb|CH401165.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.006
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.006
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 48 0.006
dbj|AK058639.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.022
dbj|AP003909.3| Oryza sativa (japonica cultivar-group) geno... 46 0.022
dbj|AP004462.3| Oryza sativa (japonica cultivar-group) geno... 46 0.022
gb|AACV01017100.1| Oryza sativa (japonica cultivar-group) c... 46 0.022
ref|XM_479691.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.022
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 46 0.022
gb|CH401228.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.022
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.022
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 46 0.022
dbj|AK059010.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.087
dbj|AP006069.3| Oryza sativa (japonica cultivar-group) geno... 44 0.087
gb|AACV01004716.1| Oryza sativa (japonica cultivar-group) c... 44 0.087
gb|AACV01017101.1| Oryza sativa (japonica cultivar-group) c... 44 0.087
ref|XM_466323.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.087
ref|NT_107180.1| Oryza sativa (japonica cultivar-group) 44 0.087
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.087
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.087
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 44 0.087
gb|CA755419.1|CA755419 BR030020000_PLATE_C01_3_004.ab1 OA O... 42 0.35
dbj|AK108838.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.35
dbj|AK120987.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.35
dbj|AP005245.3| Oryza sativa (japonica cultivar-group) geno... 42 0.35
dbj|AP005254.3| Oryza sativa (japonica cultivar-group) geno... 42 0.35
gb|AC109595.2| Oryza sativa (japonica cultivar-group) chrom... 42 0.35
gb|AACV01001813.1| Oryza sativa (japonica cultivar-group) c... 42 0.35
gb|AACV01012211.1| Oryza sativa (japonica cultivar-group) c... 42 0.35
ref|XM_479689.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.35
ref|XM_479695.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.35
ref|NT_107212.1| Oryza sativa (japonica cultivar-group) 42 0.35
gb|CH401206.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.35
gb|CH401166.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.35
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.35
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 42 0.35
>gb|AQ870215.1|AQ870215 nbeb0036N08f CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0036N08f, DNA sequence
Length = 754
Score = 48.1 bits (24), Expect = 0.006
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 529 caaggggaacgacttccagtacataccgttcggcgc 564
|||||||| |||||| |||||||||||||||||||
Sbjct: 579 caaggggacggacttcgagtacataccgttcggcgc 544
>dbj|AP002968.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0416G11
Length = 138858
Score = 48.1 bits (24), Expect = 0.006
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 529 caaggggaacgacttccagtacataccgttcggcgc 564
|||||||| |||||| |||||||||||||||||||
Sbjct: 2124 caaggggacggacttcgagtacataccgttcggcgc 2089
>dbj|AP003204.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:B1111C09
Length = 156393
Score = 48.1 bits (24), Expect = 0.006
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 529 caaggggaacgacttccagtacataccgttcggcgc 564
|||||||| |||||| |||||||||||||||||||
Sbjct: 121736 caaggggacggacttcgagtacataccgttcggcgc 121701
>gb|AACV01001144.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg001144, whole
genome shotgun sequence
Length = 7261
Score = 48.1 bits (24), Expect = 0.006
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 529 caaggggaacgacttccagtacataccgttcggcgc 564
|||||||| |||||| |||||||||||||||||||
Sbjct: 3600 caaggggacggacttcgagtacataccgttcggcgc 3565
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 48.1 bits (24), Expect = 0.006
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 529 caaggggaacgacttccagtacataccgttcggcgc 564
|||||||| |||||| |||||||||||||||||||
Sbjct: 15562009 caaggggacggacttcgagtacataccgttcggcgc 15561974
>ref|NM_193877.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1557
Score = 48.1 bits (24), Expect = 0.006
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 529 caaggggaacgacttccagtacataccgttcggcgc 564
|||||||| |||||| |||||||||||||||||||
Sbjct: 1308 caaggggacggacttcgagtacataccgttcggcgc 1343
>ref|NT_079947.2| Oryza sativa (japonica cultivar-group)
Length = 1767736
Score = 48.1 bits (24), Expect = 0.006
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 529 caaggggaacgacttccagtacataccgttcggcgc 564
|||||||| |||||| |||||||||||||||||||
Sbjct: 590474 caaggggacggacttcgagtacataccgttcggcgc 590439
>gb|CH401165.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000002 genomic
scaffold, whole genome shotgun sequence
Length = 5008528
Score = 48.1 bits (24), Expect = 0.006
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 529 caaggggaacgacttccagtacataccgttcggcgc 564
|||||||| |||||| |||||||||||||||||||
Sbjct: 3978575 caaggggacggacttcgagtacataccgttcggcgc 3978540
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 48.1 bits (24), Expect = 0.006
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 529 caaggggaacgacttccagtacataccgttcggcgc 564
|||||||| |||||| |||||||||||||||||||
Sbjct: 15595070 caaggggacggacttcgagtacataccgttcggcgc 15595035
Score = 42.1 bits (21), Expect = 0.35
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 458 tgggagagagccgaggagttcatgcccgagcgcttcatgga 498
|||||||| |||||||||||||||| ||| | ||||||||
Sbjct: 23831911 tgggagaggcccgaggagttcatgccagagaggttcatgga 23831951
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 48.1 bits (24), Expect = 0.006
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 529 caaggggaacgacttccagtacataccgttcggcgc 564
|||||||| |||||| |||||||||||||||||||
Sbjct: 15564227 caaggggacggacttcgagtacataccgttcggcgc 15564192
>dbj|AK058639.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-D09, full
insert sequence
Length = 1395
Score = 46.1 bits (23), Expect = 0.022
Identities = 92/115 (80%)
Strand = Plus / Plus
Query: 123 tggtggtcatgttcgaagctggcactgacacatccttcatagtgctggaatacgccatgg 182
||||| |||||||||| | ||||| ||||| | | ||||| ||| |||||||||||||
Sbjct: 1061 tggtgatcatgttcgagggcggcacggacacggcgtacatagagcttgaatacgccatgg 1120
Query: 183 ttcagctgatgcgaaacccccacctgatgaccaagctacaagccgaggtgaggag 237
|| |||| || || ||||| || ||| |||||||||| |||||||| |||||
Sbjct: 1121 ccgagttgattcggaagccccaactaatggccaagctacaggccgaggttaggag 1175
Score = 44.1 bits (22), Expect = 0.087
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 47 gagagtgatttcatccatgtcttgctctcccttcagca 84
||||||||||||||| ||||| | |||||| |||||||
Sbjct: 985 gagagtgatttcatcgatgtccttctctccattcagca 1022
>dbj|AP003909.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
clone:OJ1300_E01
Length = 103022
Score = 46.1 bits (23), Expect = 0.022
Identities = 92/115 (80%)
Strand = Plus / Minus
Query: 123 tggtggtcatgttcgaagctggcactgacacatccttcatagtgctggaatacgccatgg 182
||||| |||||||||| | ||||| ||||| | | ||||| ||| |||||||||||||
Sbjct: 57386 tggtgatcatgttcgagggcggcacggacacggcgtacatagagcttgaatacgccatgg 57327
Query: 183 ttcagctgatgcgaaacccccacctgatgaccaagctacaagccgaggtgaggag 237
|| |||| || || ||||| || ||| |||||||||| |||||||| |||||
Sbjct: 57326 ccgagttgattcggaagccccaactaatggccaagctacaggccgaggttaggag 57272
Score = 44.1 bits (22), Expect = 0.087
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 47 gagagtgatttcatccatgtcttgctctcccttcagca 84
||||||||||||||| ||||| | |||||| |||||||
Sbjct: 57462 gagagtgatttcatcgatgtccttctctccattcagca 57425
Score = 42.1 bits (21), Expect = 0.35
Identities = 90/113 (79%)
Strand = Plus / Minus
Query: 123 tggtggtcatgttcgaagctggcactgacacatccttcatagtgctggaatacgccatgg 182
|||| ||||||||||| ||||| || || ||||| | ||||| ||| || || |||||||
Sbjct: 49476 tggttgtcatgttcgaggctggaacagatacatcatacatagagctagagtatgccatgg 49417
Query: 183 ttcagctgatgcgaaacccccacctgatgaccaagctacaagccgaggtgagg 235
|||| || | || ||||| |||||| |||||||||| || |||||||||
Sbjct: 49416 ccgagctaatacagaagccccagctgatggccaagctacaggctgaggtgagg 49364
>dbj|AP004462.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8,
PAC clone:P0450B04
Length = 153268
Score = 46.1 bits (23), Expect = 0.022
Identities = 92/115 (80%)
Strand = Plus / Minus
Query: 123 tggtggtcatgttcgaagctggcactgacacatccttcatagtgctggaatacgccatgg 182
||||| |||||||||| | ||||| ||||| | | ||||| ||| |||||||||||||
Sbjct: 474 tggtgatcatgttcgagggcggcacggacacggcgtacatagagcttgaatacgccatgg 415
Query: 183 ttcagctgatgcgaaacccccacctgatgaccaagctacaagccgaggtgaggag 237
|| |||| || || ||||| || ||| |||||||||| |||||||| |||||
Sbjct: 414 ccgagttgattcggaagccccaactaatggccaagctacaggccgaggttaggag 360
Score = 44.1 bits (22), Expect = 0.087
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 47 gagagtgatttcatccatgtcttgctctcccttcagca 84
||||||||||||||| ||||| | |||||| |||||||
Sbjct: 550 gagagtgatttcatcgatgtccttctctccattcagca 513
>gb|AACV01017100.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg017100, whole
genome shotgun sequence
Length = 26249
Score = 46.1 bits (23), Expect = 0.022
Identities = 92/115 (80%)
Strand = Plus / Minus
Query: 123 tggtggtcatgttcgaagctggcactgacacatccttcatagtgctggaatacgccatgg 182
||||| |||||||||| | ||||| ||||| | | ||||| ||| |||||||||||||
Sbjct: 25675 tggtgatcatgttcgagggcggcacggacacggcgtacatagagcttgaatacgccatgg 25616
Query: 183 ttcagctgatgcgaaacccccacctgatgaccaagctacaagccgaggtgaggag 237
|| |||| || || ||||| || ||| |||||||||| |||||||| |||||
Sbjct: 25615 ccgagttgattcggaagccccaactaatggccaagctacaggccgaggttaggag 25561
Score = 44.1 bits (22), Expect = 0.087
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 47 gagagtgatttcatccatgtcttgctctcccttcagca 84
||||||||||||||| ||||| | |||||| |||||||
Sbjct: 25751 gagagtgatttcatcgatgtccttctctccattcagca 25714
Score = 42.1 bits (21), Expect = 0.35
Identities = 90/113 (79%)
Strand = Plus / Minus
Query: 123 tggtggtcatgttcgaagctggcactgacacatccttcatagtgctggaatacgccatgg 182
|||| ||||||||||| ||||| || || ||||| | ||||| ||| || || |||||||
Sbjct: 17765 tggttgtcatgttcgaggctggaacagatacatcatacatagagctagagtatgccatgg 17706
Query: 183 ttcagctgatgcgaaacccccacctgatgaccaagctacaagccgaggtgagg 235
|||| || | || ||||| |||||| |||||||||| || |||||||||
Sbjct: 17705 ccgagctaatacagaagccccagctgatggccaagctacaggctgaggtgagg 17653
>ref|XM_479691.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1395
Score = 46.1 bits (23), Expect = 0.022
Identities = 92/115 (80%)
Strand = Plus / Plus
Query: 123 tggtggtcatgttcgaagctggcactgacacatccttcatagtgctggaatacgccatgg 182
||||| |||||||||| | ||||| ||||| | | ||||| ||| |||||||||||||
Sbjct: 1061 tggtgatcatgttcgagggcggcacggacacggcgtacatagagcttgaatacgccatgg 1120
Query: 183 ttcagctgatgcgaaacccccacctgatgaccaagctacaagccgaggtgaggag 237
|| |||| || || ||||| || ||| |||||||||| |||||||| |||||
Sbjct: 1121 ccgagttgattcggaagccccaactaatggccaagctacaggccgaggttaggag 1175
Score = 44.1 bits (22), Expect = 0.087
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 47 gagagtgatttcatccatgtcttgctctcccttcagca 84
||||||||||||||| ||||| | |||||| |||||||
Sbjct: 985 gagagtgatttcatcgatgtccttctctccattcagca 1022
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 46.1 bits (23), Expect = 0.022
Identities = 92/115 (80%)
Strand = Plus / Minus
Query: 123 tggtggtcatgttcgaagctggcactgacacatccttcatagtgctggaatacgccatgg 182
||||| |||||||||| | ||||| ||||| | | ||||| ||| |||||||||||||
Sbjct: 57386 tggtgatcatgttcgagggcggcacggacacggcgtacatagagcttgaatacgccatgg 57327
Query: 183 ttcagctgatgcgaaacccccacctgatgaccaagctacaagccgaggtgaggag 237
|| |||| || || ||||| || ||| |||||||||| |||||||| |||||
Sbjct: 57326 ccgagttgattcggaagccccaactaatggccaagctacaggccgaggttaggag 57272
Score = 44.1 bits (22), Expect = 0.087
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 47 gagagtgatttcatccatgtcttgctctcccttcagca 84
||||||||||||||| ||||| | |||||| |||||||
Sbjct: 57462 gagagtgatttcatcgatgtccttctctccattcagca 57425
Score = 42.1 bits (21), Expect = 0.35
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 458 tgggagagagccgaggagttcatgcccgagcgcttcatgga 498
|||||||| |||||||||||||||| ||| | ||||||||
Sbjct: 24859976 tgggagaggcccgaggagttcatgccagagaggttcatgga 24860016
Score = 42.1 bits (21), Expect = 0.35
Identities = 90/113 (79%)
Strand = Plus / Minus
Query: 123 tggtggtcatgttcgaagctggcactgacacatccttcatagtgctggaatacgccatgg 182
|||| ||||||||||| ||||| || || ||||| | ||||| ||| || || |||||||
Sbjct: 49476 tggttgtcatgttcgaggctggaacagatacatcatacatagagctagagtatgccatgg 49417
Query: 183 ttcagctgatgcgaaacccccacctgatgaccaagctacaagccgaggtgagg 235
|||| || | || ||||| |||||| |||||||||| || |||||||||
Sbjct: 49416 ccgagctaatacagaagccccagctgatggccaagctacaggctgaggtgagg 49364
>gb|CH401228.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000065
genomic scaffold, whole genome shotgun sequence
Length = 5026603
Score = 46.1 bits (23), Expect = 0.022
Identities = 92/115 (80%)
Strand = Plus / Minus
Query: 123 tggtggtcatgttcgaagctggcactgacacatccttcatagtgctggaatacgccatgg 182
||||| |||||||||| | ||||| ||||| | | ||||| ||| |||||||||||||
Sbjct: 295623 tggtgatcatgttcgagggcggcacggacacggcgtacatagagcttgaatacgccatgg 295564
Query: 183 ttcagctgatgcgaaacccccacctgatgaccaagctacaagccgaggtgaggag 237
|| |||| || || ||||| || ||| |||||||||| |||||||| |||||
Sbjct: 295563 ccgagttgattcggaagccccaactaatggccaagctacaggccgaggttaggag 295509
Score = 44.1 bits (22), Expect = 0.087
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 47 gagagtgatttcatccatgtcttgctctcccttcagca 84
||||||||||||||| ||||| | |||||| |||||||
Sbjct: 296338 gagagtgatttcatcgatgtccttctctccattcagca 296301
Score = 44.1 bits (22), Expect = 0.087
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 47 gagagtgatttcatccatgtcttgctctcccttcagca 84
||||||||||||||| ||||| | |||||| |||||||
Sbjct: 295699 gagagtgatttcatcgatgtccttctctccattcagca 295662
Score = 42.1 bits (21), Expect = 0.35
Identities = 90/113 (79%)
Strand = Plus / Minus
Query: 123 tggtggtcatgttcgaagctggcactgacacatccttcatagtgctggaatacgccatgg 182
|||| ||||||||||| ||||| || || ||||| | ||||| ||| || || |||||||
Sbjct: 287713 tggttgtcatgttcgaggctggaacagatacatcatacatagagctagagtatgccatgg 287654
Query: 183 ttcagctgatgcgaaacccccacctgatgaccaagctacaagccgaggtgagg 235
|||| || | || ||||| |||||| |||||||||| || |||||||||
Sbjct: 287653 ccgagctaatacagaagccccagctgatggccaagctacaggctgaggtgagg 287601
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 46.1 bits (23), Expect = 0.022
Identities = 92/115 (80%)
Strand = Plus / Minus
Query: 123 tggtggtcatgttcgaagctggcactgacacatccttcatagtgctggaatacgccatgg 182
||||| |||||||||| | ||||| ||||| | | ||||| ||| |||||||||||||
Sbjct: 295623 tggtgatcatgttcgagggcggcacggacacggcgtacatagagcttgaatacgccatgg 295564
Query: 183 ttcagctgatgcgaaacccccacctgatgaccaagctacaagccgaggtgaggag 237
|| |||| || || ||||| || ||| |||||||||| |||||||| |||||
Sbjct: 295563 ccgagttgattcggaagccccaactaatggccaagctacaggccgaggttaggag 295509
Score = 44.1 bits (22), Expect = 0.087
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 47 gagagtgatttcatccatgtcttgctctcccttcagca 84
||||||||||||||| ||||| | |||||| |||||||
Sbjct: 296338 gagagtgatttcatcgatgtccttctctccattcagca 296301
Score = 44.1 bits (22), Expect = 0.087
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 47 gagagtgatttcatccatgtcttgctctcccttcagca 84
||||||||||||||| ||||| | |||||| |||||||
Sbjct: 295699 gagagtgatttcatcgatgtccttctctccattcagca 295662
Score = 42.1 bits (21), Expect = 0.35
Identities = 90/113 (79%)
Strand = Plus / Minus
Query: 123 tggtggtcatgttcgaagctggcactgacacatccttcatagtgctggaatacgccatgg 182
|||| ||||||||||| ||||| || || ||||| | ||||| ||| || || |||||||
Sbjct: 287713 tggttgtcatgttcgaggctggaacagatacatcatacatagagctagagtatgccatgg 287654
Query: 183 ttcagctgatgcgaaacccccacctgatgaccaagctacaagccgaggtgagg 235
|||| || | || ||||| |||||| |||||||||| || |||||||||
Sbjct: 287653 ccgagctaatacagaagccccagctgatggccaagctacaggctgaggtgagg 287601
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8,
complete sequence
Length = 28434780
Score = 46.1 bits (23), Expect = 0.022
Identities = 92/115 (80%)
Strand = Plus / Minus
Query: 123 tggtggtcatgttcgaagctggcactgacacatccttcatagtgctggaatacgccatgg 182
||||| |||||||||| | ||||| ||||| | | ||||| ||| |||||||||||||
Sbjct: 290960 tggtgatcatgttcgagggcggcacggacacggcgtacatagagcttgaatacgccatgg 290901
Query: 183 ttcagctgatgcgaaacccccacctgatgaccaagctacaagccgaggtgaggag 237
|| |||| || || ||||| || ||| |||||||||| |||||||| |||||
Sbjct: 290900 ccgagttgattcggaagccccaactaatggccaagctacaggccgaggttaggag 290846
Score = 44.1 bits (22), Expect = 0.087
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 47 gagagtgatttcatccatgtcttgctctcccttcagca 84
||||||||||||||| ||||| | |||||| |||||||
Sbjct: 291036 gagagtgatttcatcgatgtccttctctccattcagca 290999
Score = 42.1 bits (21), Expect = 0.35
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 458 tgggagagagccgaggagttcatgcccgagcgcttcatgga 498
|||||||| |||||||||||||||| ||| | ||||||||
Sbjct: 25098063 tgggagaggcccgaggagttcatgccagagaggttcatgga 25098103
Score = 42.1 bits (21), Expect = 0.35
Identities = 90/113 (79%)
Strand = Plus / Minus
Query: 123 tggtggtcatgttcgaagctggcactgacacatccttcatagtgctggaatacgccatgg 182
|||| ||||||||||| ||||| || || ||||| | ||||| ||| || || |||||||
Sbjct: 283050 tggttgtcatgttcgaggctggaacagatacatcatacatagagctagagtatgccatgg 282991
Query: 183 ttcagctgatgcgaaacccccacctgatgaccaagctacaagccgaggtgagg 235
|||| || | || ||||| |||||| |||||||||| || |||||||||
Sbjct: 282990 ccgagctaatacagaagccccagctgatggccaagctacaggctgaggtgagg 282938
>dbj|AK059010.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-020-H10, full
insert sequence
Length = 1669
Score = 44.1 bits (22), Expect = 0.087
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 458 tgggagagagccgaggagttcatgcccgagcgcttcatggag 499
|||||||| |||| |||||| |||| |||||||||||||||
Sbjct: 1244 tgggagaggcccgacgagttcgtgccggagcgcttcatggag 1285
>dbj|AP006069.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0025F02
Length = 156545
Score = 44.1 bits (22), Expect = 0.087
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 458 tgggagagagccgaggagttcatgcccgagcgcttcatggag 499
|||||||| |||| |||||| |||| |||||||||||||||
Sbjct: 64641 tgggagaggcccgacgagttcgtgccggagcgcttcatggag 64682
>gb|AACV01004716.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg004716,
whole genome shotgun sequence
Length = 12474
Score = 44.1 bits (22), Expect = 0.087
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 458 tgggagagagccgaggagttcatgcccgagcgcttcatggag 499
|||||||| |||| |||||| |||| |||||||||||||||
Sbjct: 409 tgggagaggcccgacgagttcgtgccggagcgcttcatggag 368
>gb|AACV01017101.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg017101, whole
genome shotgun sequence
Length = 12787
Score = 44.1 bits (22), Expect = 0.087
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 47 gagagtgatttcatccatgtcttgctctcccttcagca 84
||||||||||||||| ||||| | |||||| |||||||
Sbjct: 12697 gagagtgatttcatcgatgtccttctctccattcagca 12734
>ref|XM_466323.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1669
Score = 44.1 bits (22), Expect = 0.087
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 458 tgggagagagccgaggagttcatgcccgagcgcttcatggag 499
|||||||| |||| |||||| |||| |||||||||||||||
Sbjct: 1244 tgggagaggcccgacgagttcgtgccggagcgcttcatggag 1285
>ref|NT_107180.1| Oryza sativa (japonica cultivar-group)
Length = 6019143
Score = 44.1 bits (22), Expect = 0.087
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 458 tgggagagagccgaggagttcatgcccgagcgcttcatggag 499
|||||||| |||| |||||| |||| |||||||||||||||
Sbjct: 2867486 tgggagaggcccgacgagttcgtgccggagcgcttcatggag 2867527
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 44.1 bits (22), Expect = 0.087
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 458 tgggagagagccgaggagttcatgcccgagcgcttcatggag 499
|||||||| |||| |||||| |||| |||||||||||||||
Sbjct: 8017566 tgggagaggcccgacgagttcgtgccggagcgcttcatggag 8017607
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 44.1 bits (22), Expect = 0.087
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 458 tgggagagagccgaggagttcatgcccgagcgcttcatggag 499
|||||||| |||| |||||| |||| |||||||||||||||
Sbjct: 21470630 tgggagaggcccgacgagttcgtgccggagcgcttcatggag 21470671
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 44.1 bits (22), Expect = 0.087
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 458 tgggagagagccgaggagttcatgcccgagcgcttcatggag 499
|||||||| |||| |||||| |||| |||||||||||||||
Sbjct: 21683244 tgggagaggcccgacgagttcgtgccggagcgcttcatggag 21683285
>gb|CA755419.1|CA755419 BR030020000_PLATE_C01_3_004.ab1 OA Oryza sativa (japonica
cultivar-group) cDNA clone
BR030020000_PLATE_C01_3_004.ab1 similar to cytochrome
P450 [Nepeta racemosa], mRNA sequence
Length = 614
Score = 42.1 bits (21), Expect = 0.35
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 294 cctacctcaaggcagtcgtcaaagagacgctgcggctccac 334
||||||||||||| || || || |||||||| |||||||||
Sbjct: 271 cctacctcaaggccgtggtgaaggagacgctccggctccac 311
>dbj|AK108838.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-151-H01, full
insert sequence
Length = 983
Score = 42.1 bits (21), Expect = 0.35
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 112 caaggcgcagctggtggtcat 132
|||||||||||||||||||||
Sbjct: 474 caaggcgcagctggtggtcat 494
>dbj|AK120987.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023042L02, full
insert sequence
Length = 1723
Score = 42.1 bits (21), Expect = 0.35
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 294 cctacctcaaggcagtcgtcaaagagacgctgcggctccac 334
||||||||||||| || || || |||||||| |||||||||
Sbjct: 1146 cctacctcaaggccgtggtgaaggagacgctccggctccac 1186
>dbj|AP005245.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
clone:OSJNBa0025J22
Length = 175355
Score = 42.1 bits (21), Expect = 0.35
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 458 tgggagagagccgaggagttcatgcccgagcgcttcatgga 498
|||||||| |||||||||||||||| ||| | ||||||||
Sbjct: 154179 tgggagaggcccgaggagttcatgccagagaggttcatgga 154219
>dbj|AP005254.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
clone:OSJNBb0064I19
Length = 111644
Score = 42.1 bits (21), Expect = 0.35
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 458 tgggagagagccgaggagttcatgcccgagcgcttcatgga 498
|||||||| |||||||||||||||| ||| | ||||||||
Sbjct: 2238 tgggagaggcccgaggagttcatgccagagaggttcatgga 2278
>gb|AC109595.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1212_B02,
complete sequence
Length = 125650
Score = 42.1 bits (21), Expect = 0.35
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 294 cctacctcaaggcagtcgtcaaagagacgctgcggctccac 334
||||||||||||| || || || |||||||| |||||||||
Sbjct: 70904 cctacctcaaggccgtggtgaaggagacgctccggctccac 70864
>gb|AACV01001813.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg001813, whole
genome shotgun sequence
Length = 23254
Score = 42.1 bits (21), Expect = 0.35
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 458 tgggagagagccgaggagttcatgcccgagcgcttcatgga 498
|||||||| |||||||||||||||| ||| | ||||||||
Sbjct: 6894 tgggagaggcccgaggagttcatgccagagaggttcatgga 6934
>gb|AACV01012211.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg012211, whole
genome shotgun sequence
Length = 47359
Score = 42.1 bits (21), Expect = 0.35
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 294 cctacctcaaggcagtcgtcaaagagacgctgcggctccac 334
||||||||||||| || || || |||||||| |||||||||
Sbjct: 36282 cctacctcaaggccgtggtgaaggagacgctccggctccac 36242
>ref|XM_479689.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1605
Score = 42.1 bits (21), Expect = 0.35
Identities = 90/113 (79%)
Strand = Plus / Plus
Query: 123 tggtggtcatgttcgaagctggcactgacacatccttcatagtgctggaatacgccatgg 182
|||| ||||||||||| ||||| || || ||||| | ||||| ||| || || |||||||
Sbjct: 986 tggttgtcatgttcgaggctggaacagatacatcatacatagagctagagtatgccatgg 1045
Query: 183 ttcagctgatgcgaaacccccacctgatgaccaagctacaagccgaggtgagg 235
|||| || | || ||||| |||||| |||||||||| || |||||||||
Sbjct: 1046 ccgagctaatacagaagccccagctgatggccaagctacaggctgaggtgagg 1098
>ref|XM_479695.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1587
Score = 42.1 bits (21), Expect = 0.35
Identities = 90/113 (79%)
Strand = Plus / Plus
Query: 125 gtggtcatgttcgaagctggcactgacacatccttcatagtgctggaatacgccatggtt 184
|||| |||||| ||||| ||||| |||||||| | | |||| || |||| |||||||||
Sbjct: 976 gtggacatgtttgaagcaggcacggacacatcgtacttagttctagaatctgccatggtt 1035
Query: 185 cagctgatgcgaaacccccacctgatgaccaagctacaagccgaggtgaggag 237
|||| ||||| || || ||||| | |||||||| | | ||||||||||||
Sbjct: 1036 gagctcatgcgcaagccacacctcctagccaagctaaaggacgaggtgaggag 1088
>ref|NT_107212.1| Oryza sativa (japonica cultivar-group)
Length = 2712182
Score = 42.1 bits (21), Expect = 0.35
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 294 cctacctcaaggcagtcgtcaaagagacgctgcggctccac 334
||||||||||||| || || || |||||||| |||||||||
Sbjct: 1954228 cctacctcaaggccgtggtgaaggagacgctccggctccac 1954188
>gb|CH401206.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000043 genomic
scaffold, whole genome shotgun sequence
Length = 11965857
Score = 42.1 bits (21), Expect = 0.35
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 294 cctacctcaaggcagtcgtcaaagagacgctgcggctccac 334
||||||||||||| || || || |||||||| |||||||||
Sbjct: 3001836 cctacctcaaggccgtggtgaaggagacgctccggctccac 3001796
>gb|CH401166.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000003 genomic
scaffold, whole genome shotgun sequence
Length = 8539496
Score = 42.1 bits (21), Expect = 0.35
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 458 tgggagagagccgaggagttcatgcccgagcgcttcatgga 498
|||||||| |||||||||||||||| ||| | ||||||||
Sbjct: 7206788 tgggagaggcccgaggagttcatgccagagaggttcatgga 7206828
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 42.1 bits (21), Expect = 0.35
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 294 cctacctcaaggcagtcgtcaaagagacgctgcggctccac 334
||||||||||||| || || || |||||||| |||||||||
Sbjct: 20302149 cctacctcaaggccgtggtgaaggagacgctccggctccac 20302109
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 42.1 bits (21), Expect = 0.35
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 294 cctacctcaaggcagtcgtcaaagagacgctgcggctccac 334
||||||||||||| || || || |||||||| |||||||||
Sbjct: 20648864 cctacctcaaggccgtggtgaaggagacgctccggctccac 20648824
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 799,361
Number of Sequences: 438736
Number of extensions: 799361
Number of successful extensions: 18877
Number of sequences better than 0.5: 43
Number of HSP's better than 0.5 without gapping: 45
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 18121
Number of HSP's gapped (non-prelim): 758
length of query: 613
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 592
effective length of database: 2,791,206,460
effective search space: 1652394224320
effective search space used: 1652394224320
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)