BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3838122.2.1
(1865 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK072245.1| Oryza sativa (japonica cultivar-group) cDNA... 757 0.0
dbj|AP004851.3| Oryza sativa (japonica cultivar-group) geno... 531 e-148
gb|AACV01003168.1| Oryza sativa (japonica cultivar-group) c... 531 e-148
ref|NT_107175.1| Oryza sativa (japonica cultivar-group) 531 e-148
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 531 e-148
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 531 e-148
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 531 e-148
gb|C25279.1|C25279 C25279 Rice shoot Oryza sativa (japonica... 280 3e-072
gb|CB675354.1|CB675354 OSJNEe11A24.f OSJNEe Oryza sativa (j... 98 2e-017
dbj|AK065130.1| Oryza sativa (japonica cultivar-group) cDNA... 98 2e-017
dbj|AK099312.1| Oryza sativa (japonica cultivar-group) cDNA... 98 2e-017
gb|AACV01010189.1| Oryza sativa (japonica cultivar-group) c... 98 2e-017
ref|XM_473317.1| Oryza sativa (japonica cultivar-group), p... 98 2e-017
ref|NT_079865.2| Oryza sativa (japonica cultivar-group) 98 2e-017
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 98 2e-017
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 98 2e-017
emb|AL662998.4|OSJN00196 Oryza sativa genomic DNA, chromoso... 98 2e-017
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 98 2e-017
gb|CV721157.1|CV721157 YBH--03-B14.b1 Rice before heading y... 94 3e-016
dbj|AK072276.1| Oryza sativa (japonica cultivar-group) cDNA... 94 3e-016
gb|AACV01009704.1| Oryza sativa (japonica cultivar-group) c... 94 3e-016
ref|XM_472409.1| Oryza sativa (japonica cultivar-group), p... 94 3e-016
ref|NT_107198.1| Oryza sativa (japonica cultivar-group) 94 3e-016
gb|CH401189.1| Oryza sativa (japonica cultivar-group) chrom... 94 3e-016
gb|AY578159.1| Oryza sativa (japonica cultivar-group) cell-... 94 3e-016
emb|AL662945.3|OSJN00141 Oryza sativa genomic DNA, chromoso... 94 3e-016
dbj|AK099126.1| Oryza sativa (japonica cultivar-group) cDNA... 90 5e-015
dbj|AK120779.1| Oryza sativa (japonica cultivar-group) cDNA... 84 3e-013
gb|AACV01009702.1| Oryza sativa (japonica cultivar-group) c... 84 3e-013
ref|XM_472408.1| Oryza sativa (japonica cultivar-group), p... 84 3e-013
gb|AY578160.1| Oryza sativa (japonica cultivar-group) cell-... 84 3e-013
gb|AU184122.1|AU184122 AU184122 Rice root Oryza sativa (jap... 82 1e-012
gb|CB672111.1|CB672111 OSJNEe05P17.f OSJNEe Oryza sativa (j... 82 1e-012
gb|AC118133.4| Oryza sativa chromosome 3 BAC OSJNBb0016H12 ... 78 2e-011
gb|AY387483.1| Oryza sativa (japonica cultivar-group) BAC O... 78 2e-011
gb|AACV01007875.1| Oryza sativa (japonica cultivar-group) c... 78 2e-011
ref|XM_469625.1| Oryza sativa (japonica cultivar-group), mRNA 78 2e-011
ref|NT_079916.2| Oryza sativa (japonica cultivar-group) 78 2e-011
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 78 2e-011
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 78 2e-011
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 78 2e-011
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 78 2e-011
gb|AQ856945.1|AQ856945 nbeb0004J06r CUGI Rice BAC Library (... 70 5e-009
gb|AQ865627.1|AQ865627 nbeb0025D12r CUGI Rice BAC Library (... 70 5e-009
gb|C71989.1|C71989 C71989 Rice panicle at flowering stage O... 70 5e-009
gb|CB651234.1|CB651234 OSJNEb16B24.f OSJNEb Oryza sativa (j... 70 5e-009
gb|CB675355.1|CB675355 OSJNEe11A24.r OSJNEe Oryza sativa (j... 66 7e-008
gb|AY037871.2| Oryza sativa soluble acid invertase bfruct3 ... 60 5e-006
gb|AACV01006309.1| Oryza sativa (japonica cultivar-group) c... 56 7e-005
ref|XM_474245.1| Oryza sativa (japonica cultivar-group), p... 56 7e-005
ref|NT_107201.1| Oryza sativa (japonica cultivar-group) 56 7e-005
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 56 7e-005
gb|AY578163.1| Oryza sativa (japonica cultivar-group) cell-... 56 7e-005
emb|AL606646.3|OSJN00091 Oryza sativa genomic DNA, chromoso... 56 7e-005
gb|AY037870.2| Oryza sativa soluble acid invertase bfruct2 ... 52 0.001
dbj|AK061861.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.27
dbj|AK099005.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.27
gb|AACV01001385.1| Oryza sativa (japonica cultivar-group) c... 44 0.27
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 44 0.27
ref|NM_193158.1| Oryza sativa (japonica cultivar-group), p... 44 0.27
ref|NT_079926.2| Oryza sativa (japonica cultivar-group) 44 0.27
dbj|AP004357.4| Oryza sativa (japonica cultivar-group) geno... 44 0.27
dbj|AP003370.3| Oryza sativa (japonica cultivar-group) geno... 44 0.27
gb|CH401166.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.27
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.27
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 44 0.27
>dbj|AK072245.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002K22, full
insert sequence
Length = 2443
Score = 757 bits (382), Expect = 0.0
Identities = 808/947 (85%), Gaps = 11/947 (1%)
Strand = Plus / Minus
Query: 355 gccatgtagtcgtggttgtatgacgagtccatctcgtggacgacgagcttcgtggccgtg 414
||||||||| | |||||||| || ||||||||||||||||||||||||||| ||||||||
Sbjct: 2083 gccatgtaggcttggttgtaggaggagtccatctcgtggacgacgagcttcttggccgtg 2024
Query: 415 acccgcgcggcggtggcgttgttgaagaggaagacgccggcgttggcgtagatggcctcg 474
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2023 acgcgcgcgctggtggcgttgttgaagaggaagacgccggcgttggcgtagatggcctcc 1964
Query: 475 gtggggtagacgcgcgatgtggcggtggacctcccgccctgcgcgaagctctcgacgatg 534
|||||||| || ||||| || || ||||||||||| ||||||||||||||||||||||||
Sbjct: 1963 gtggggtacacccgcgacgtcgccgtggacctccccccctgcgcgaagctctcgacgatg 1904
Query: 535 gagtggtcgacgagcacccggagcgagagcgtggcctcgtcctccagcacggggacggcg 594
||||||||||||||||||||||| |||| || |||| | || ||||| |||||| ||
Sbjct: 1903 gagtggtcgacgagcacccggagggagaaggt---ctcgccgtcgagcaccgggacgacg 1847
Query: 595 ctgccgacgacgcgcttgacgatgtcggtggcgctggaggagcgggactcgtcctggcag 654
|||||||||| | ||||||||||||| |||| || || | |||||||||||||||
Sbjct: 1846 ttgccgacgaccctcttgacgatgtcgtcggcgtgcgacgacctcgactcgtcctggcag 1787
Query: 655 aagtgcgtggcgagggagccgtccaggcccttggccacgtagaagtagacggccgtctgc 714
|||||||| | || | |||||| |||||||||||||||||||| ||||| ||||||
Sbjct: 1786 aagtgcgtcgtgacgccgccgtcgctccccttggccacgtagaagtacacggcggtctgc 1727
Query: 715 t------cgcggcggaggcggcggtcggcgaggacgaacaggccgaagggccccagcgcg 768
| | | |||| |||| ||||||||| || | ||| |||||||| ||||| |||
Sbjct: 1726 tccccatccccgcggtggcgcttgtcggcgagcaccagcagcccgaaggggcccagggcg 1667
Query: 769 ccgcggccggcggcgcccccgctggtgctgcagttgtagcccacgtccgcctcgttgagc 828
|| |||||||| ||||| ||||||||||||||||||||||| ||||| |||||| || |
Sbjct: 1666 ccccggccggccgcgccgccgctggtgctgcagttgtagccgacgtcggcctcgagga-c 1608
Query: 829 gacat-gacggcgcggcggtccagctggaactccgcctcgatgtccagctgggtggcgcg 887
| | | ||||||| | |||| ||||||||||| || |||||| ||||| ||||||||
Sbjct: 1607 ggcgtcgacggcgagcgggtcgagctggaactcggcgaggatgtcgagctgcgtggcgcg 1548
Query: 888 gcggaggttgagcgggaacacggagccgtagtcgatggtgatgccgctgaggtcggtgga 947
| |||||||||||||||| |||||| ||||||||| ||||||||||| || |||||||||
Sbjct: 1547 gtggaggttgagcgggaagacggaggcgtagtcgacggtgatgccgccgaagtcggtgga 1488
Query: 948 gttggtgcgcagcgtctccacctcctccacgggccactgaagcaggttgctgcccgtctt 1007
|||||||||||||||||||||||||||||| ||||| || ||||||||||| ||||||||
Sbjct: 1487 gttggtgcgcagcgtctccacctcctccaccggccattgcagcaggttgctccccgtctt 1428
Query: 1008 ggtgtccaggagcaccgtccgggggataccctgcagcgacgcccatcccttggacacgtc 1067
||||||||| ||||||||| || || ||| || || ||||| ||||||| |||||
Sbjct: 1427 ggtgtccagctccaccgtccgaggaatcgactggagggaagcccaacccttggcgacgtc 1368
Query: 1068 cgcgcgctccgagtctgtctcgccgacccatccccacagcacgcggcggcgcttggccgg 1127
|||||||| ||||| |||||||||||||| ||||| || ||||||||||||||||||||
Sbjct: 1367 ggcgcgctcggagtcggtctcgccgacccaaccccagaggacgcggcggcgcttggccgg 1308
Query: 1128 gtcgtagaacgtcttggacgcgtagaacttgccccagtcgtagcgcaggccgatgccgac 1187
|||||||| |||||||| || ||||||||||||||||||||||| ||||||||||||||
Sbjct: 1307 atcgtagaaggtcttggaggcatagaacttgccccagtcgtagcggaggccgatgccgac 1248
Query: 1188 gtccctgccggcgtcgatcggcgtccaggcgttggcggccgcgtcgtacctccccagcgc 1247
||| | ||||||| | ||||||||| ||||| |||| ||||||||||||||||||
Sbjct: 1247 gtcggcggcggcgtccagcggcgtccacgcgttcctcgccgggtcgtacctccccagcgc 1188
Query: 1248 gtagtagtcgtggcggtcgtcgtccatgctggccttcatgacgtgca 1294
||||||||| ||||| |||||||||||||| |||||||| |||||||
Sbjct: 1187 gtagtagtcatggcgatcgtcgtccatgctcgccttcatcacgtgca 1141
Score = 349 bits (176), Expect = 3e-093
Identities = 397/470 (84%), Gaps = 3/470 (0%)
Strand = Plus / Minus
Query: 1381 gggtagaagtcgatgcactcccacatgccggtgccgtcgacgcggtgcagcaggcccggg 1440
|||||||||||||||||||||||||| || ||| | ||||||||||| || |||||||||
Sbjct: 1078 gggtagaagtcgatgcactcccacatccccgtggcctcgacgcggtggaggaggcccggg 1019
Query: 1441 aggagctcgaagtgcaccaggtccgtggtgcggtagacgacggcgatgcccgcgtggccg 1500
||||| ||| || || | ||| | |||||||||||||||||||||||| ||||||
Sbjct: 1018 aggaggtcgtaggtgacgaagtcggcggtgcggtagacgacggcgatgccggcgtgg--- 962
Query: 1501 tcgtcgtccttggagccgatgacgacgcgccatgcgccgtccgaggggtcgatccagacc 1560
| |||||||||||||||||||||| ||||| ||||||| ||||||||| |||| |
Sbjct: 961 tgctcgtccttggagccgatgacgatccgccagtcgccgtcggaggggtcgcgccaggcg 902
Query: 1561 gtggtggggtcgcggaagtccttgggcccgatgcccgggggcgggtacagcaccgggttg 1620
|||||||||||||||||||| | |||||| |||| ||||| || || ||||||
Sbjct: 901 gtggtggggtcgcggaagtcgcggtcgccgatggtgcggggagggtagaggacggggttg 842
Query: 1621 ccctcgtacttggtccagttggtgagcagcgggtcggcgtcgtcggcgggcacggccagg 1680
| | ||||||||||||||||||||| || |||||| || ||||| ||| ||||| |||
Sbjct: 841 gcgtggtacttggtccagttggtgaggagggggtcgtcggggtcggaggggacggcgagg 782
Query: 1681 cactgcacctggacggaggcgttggtggagcccctgtagagcattgcgaggcggccgtcg 1740
||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 781 cactggacctggacggaggcgttggtggagccggtgtagagcatggcgaggcggccgtcg 722
Query: 1741 gggagcgtggtggcggaccccgtccacacgccgttggtgtcgtaccactggtcgggcacc 1800
||||| ||||||||||| || ||||| ||||||||| |||||||||||||||||| |||
Sbjct: 721 gggagggtggtggcggagccggtccagacgccgttgacgtcgtaccactggtcgggaacc 662
Query: 1801 atggccagcgggaggcggcgccagcggatcaggtcgcgggacacggcgtg 1850
||||| || |||||| |||||||| ||| |||||||||||||| |||||
Sbjct: 661 atggcgagggggaggtggcgccagtggacgaggtcgcgggacaccgcgtg 612
>dbj|AP004851.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1359_D06
Length = 146805
Score = 531 bits (268), Expect = e-148
Identities = 571/669 (85%), Gaps = 11/669 (1%)
Strand = Plus / Minus
Query: 355 gccatgtagtcgtggttgtatgacgagtccatctcgtggacgacgagcttcgtggccgtg 414
||||||||| | |||||||| || ||||||||||||||||||||||||||| ||||||||
Sbjct: 75299 gccatgtaggcttggttgtaggaggagtccatctcgtggacgacgagcttcttggccgtg 75240
Query: 415 acccgcgcggcggtggcgttgttgaagaggaagacgccggcgttggcgtagatggcctcg 474
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75239 acgcgcgcgctggtggcgttgttgaagaggaagacgccggcgttggcgtagatggcctcc 75180
Query: 475 gtggggtagacgcgcgatgtggcggtggacctcccgccctgcgcgaagctctcgacgatg 534
|||||||| || ||||| || || ||||||||||| ||||||||||||||||||||||||
Sbjct: 75179 gtggggtacacccgcgacgtcgccgtggacctccccccctgcgcgaagctctcgacgatg 75120
Query: 535 gagtggtcgacgagcacccggagcgagagcgtggcctcgtcctccagcacggggacggcg 594
||||||||||||||||||||||| |||| || |||| | || ||||| |||||| ||
Sbjct: 75119 gagtggtcgacgagcacccggagggagaaggt---ctcgccgtcgagcaccgggacgacg 75063
Query: 595 ctgccgacgacgcgcttgacgatgtcggtggcgctggaggagcgggactcgtcctggcag 654
|||||||||| | ||||||||||||| |||| || || | |||||||||||||||
Sbjct: 75062 ttgccgacgaccctcttgacgatgtcgtcggcgtgcgacgacctcgactcgtcctggcag 75003
Query: 655 aagtgcgtggcgagggagccgtccaggcccttggccacgtagaagtagacggccgtctgc 714
|||||||| | || | |||||| |||||||||||||||||||| ||||| ||||||
Sbjct: 75002 aagtgcgtcgtgacgccgccgtcgctccccttggccacgtagaagtacacggcggtctgc 74943
Query: 715 t------cgcggcggaggcggcggtcggcgaggacgaacaggccgaagggccccagcgcg 768
| | | |||| |||| ||||||||| || | ||| |||||||| ||||| |||
Sbjct: 74942 tccccatccccgcggtggcgcttgtcggcgagcaccagcagcccgaaggggcccagggcg 74883
Query: 769 ccgcggccggcggcgcccccgctggtgctgcagttgtagcccacgtccgcctcgttgagc 828
|| |||||||| ||||| ||||||||||||||||||||||| ||||| |||||| || |
Sbjct: 74882 ccccggccggccgcgccgccgctggtgctgcagttgtagccgacgtcggcctcgagga-c 74824
Query: 829 gacat-gacggcgcggcggtccagctggaactccgcctcgatgtccagctgggtggcgcg 887
| | | ||||||| | |||| ||||||||||| || |||||| ||||| ||||||||
Sbjct: 74823 ggcgtcgacggcgagcgggtcgagctggaactcggcgaggatgtcgagctgcgtggcgcg 74764
Query: 888 gcggaggttgagcgggaacacggagccgtagtcgatggtgatgccgctgaggtcggtgga 947
| |||||||||||||||| |||||| ||||||||| ||||||||||| || |||||||||
Sbjct: 74763 gtggaggttgagcgggaagacggaggcgtagtcgacggtgatgccgccgaagtcggtgga 74704
Query: 948 gttggtgcgcagcgtctccacctcctccacgggccactgaagcaggttgctgcccgtctt 1007
|||||||||||||||||||||||||||||| ||||| || ||||||||||| ||||||||
Sbjct: 74703 gttggtgcgcagcgtctccacctcctccaccggccattgcagcaggttgctccccgtctt 74644
Query: 1008 ggtgtccag 1016
|||||||||
Sbjct: 74643 ggtgtccag 74635
Score = 349 bits (176), Expect = 3e-093
Identities = 397/470 (84%), Gaps = 3/470 (0%)
Strand = Plus / Minus
Query: 1381 gggtagaagtcgatgcactcccacatgccggtgccgtcgacgcggtgcagcaggcccggg 1440
|||||||||||||||||||||||||| || ||| | ||||||||||| || |||||||||
Sbjct: 73292 gggtagaagtcgatgcactcccacatccccgtggcctcgacgcggtggaggaggcccggg 73233
Query: 1441 aggagctcgaagtgcaccaggtccgtggtgcggtagacgacggcgatgcccgcgtggccg 1500
||||| ||| || || | ||| | |||||||||||||||||||||||| ||||||
Sbjct: 73232 aggaggtcgtaggtgacgaagtcggcggtgcggtagacgacggcgatgccggcgtgg--- 73176
Query: 1501 tcgtcgtccttggagccgatgacgacgcgccatgcgccgtccgaggggtcgatccagacc 1560
| |||||||||||||||||||||| ||||| ||||||| ||||||||| |||| |
Sbjct: 73175 tgctcgtccttggagccgatgacgatccgccagtcgccgtcggaggggtcgcgccaggcg 73116
Query: 1561 gtggtggggtcgcggaagtccttgggcccgatgcccgggggcgggtacagcaccgggttg 1620
|||||||||||||||||||| | |||||| |||| ||||| || || ||||||
Sbjct: 73115 gtggtggggtcgcggaagtcgcggtcgccgatggtgcggggagggtagaggacggggttg 73056
Query: 1621 ccctcgtacttggtccagttggtgagcagcgggtcggcgtcgtcggcgggcacggccagg 1680
| | ||||||||||||||||||||| || |||||| || ||||| ||| ||||| |||
Sbjct: 73055 gcgtggtacttggtccagttggtgaggagggggtcgtcggggtcggaggggacggcgagg 72996
Query: 1681 cactgcacctggacggaggcgttggtggagcccctgtagagcattgcgaggcggccgtcg 1740
||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 72995 cactggacctggacggaggcgttggtggagccggtgtagagcatggcgaggcggccgtcg 72936
Query: 1741 gggagcgtggtggcggaccccgtccacacgccgttggtgtcgtaccactggtcgggcacc 1800
||||| ||||||||||| || ||||| ||||||||| |||||||||||||||||| |||
Sbjct: 72935 gggagggtggtggcggagccggtccagacgccgttgacgtcgtaccactggtcgggaacc 72876
Query: 1801 atggccagcgggaggcggcgccagcggatcaggtcgcgggacacggcgtg 1850
||||| || |||||| |||||||| ||| |||||||||||||| |||||
Sbjct: 72875 atggcgagggggaggtggcgccagtggacgaggtcgcgggacaccgcgtg 72826
Score = 252 bits (127), Expect = 6e-064
Identities = 217/247 (87%)
Strand = Plus / Minus
Query: 1048 gcccatcccttggacacgtccgcgcgctccgagtctgtctcgccgacccatccccacagc 1107
||||| ||||||| ||||| |||||||| ||||| |||||||||||||| ||||| ||
Sbjct: 73601 gcccaacccttggcgacgtcggcgcgctcggagtcggtctcgccgacccaaccccagagg 73542
Query: 1108 acgcggcggcgcttggccgggtcgtagaacgtcttggacgcgtagaacttgccccagtcg 1167
|||||||||||||||||||| |||||||| |||||||| || ||||||||||||||||||
Sbjct: 73541 acgcggcggcgcttggccggatcgtagaaggtcttggaggcatagaacttgccccagtcg 73482
Query: 1168 tagcgcaggccgatgccgacgtccctgccggcgtcgatcggcgtccaggcgttggcggcc 1227
||||| ||||||||||||||||| | ||||||| | ||||||||| ||||| |||
Sbjct: 73481 tagcggaggccgatgccgacgtcggcggcggcgtccagcggcgtccacgcgttcctcgcc 73422
Query: 1228 gcgtcgtacctccccagcgcgtagtagtcgtggcggtcgtcgtccatgctggccttcatg 1287
| ||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||
Sbjct: 73421 gggtcgtacctccccagcgcgtagtagtcatggcgatcgtcgtccatgctcgccttcatc 73362
Query: 1288 acgtgca 1294
|||||||
Sbjct: 73361 acgtgca 73355
>gb|AACV01003168.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg003168, whole
genome shotgun sequence
Length = 12945
Score = 531 bits (268), Expect = e-148
Identities = 571/669 (85%), Gaps = 11/669 (1%)
Strand = Plus / Minus
Query: 355 gccatgtagtcgtggttgtatgacgagtccatctcgtggacgacgagcttcgtggccgtg 414
||||||||| | |||||||| || ||||||||||||||||||||||||||| ||||||||
Sbjct: 3128 gccatgtaggcttggttgtaggaggagtccatctcgtggacgacgagcttcttggccgtg 3069
Query: 415 acccgcgcggcggtggcgttgttgaagaggaagacgccggcgttggcgtagatggcctcg 474
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3068 acgcgcgcgctggtggcgttgttgaagaggaagacgccggcgttggcgtagatggcctcc 3009
Query: 475 gtggggtagacgcgcgatgtggcggtggacctcccgccctgcgcgaagctctcgacgatg 534
|||||||| || ||||| || || ||||||||||| ||||||||||||||||||||||||
Sbjct: 3008 gtggggtacacccgcgacgtcgccgtggacctccccccctgcgcgaagctctcgacgatg 2949
Query: 535 gagtggtcgacgagcacccggagcgagagcgtggcctcgtcctccagcacggggacggcg 594
||||||||||||||||||||||| |||| || |||| | || ||||| |||||| ||
Sbjct: 2948 gagtggtcgacgagcacccggagggagaaggt---ctcgccgtcgagcaccgggacgacg 2892
Query: 595 ctgccgacgacgcgcttgacgatgtcggtggcgctggaggagcgggactcgtcctggcag 654
|||||||||| | ||||||||||||| |||| || || | |||||||||||||||
Sbjct: 2891 ttgccgacgaccctcttgacgatgtcgtcggcgtgcgacgacctcgactcgtcctggcag 2832
Query: 655 aagtgcgtggcgagggagccgtccaggcccttggccacgtagaagtagacggccgtctgc 714
|||||||| | || | |||||| |||||||||||||||||||| ||||| ||||||
Sbjct: 2831 aagtgcgtcgtgacgccgccgtcgctccccttggccacgtagaagtacacggcggtctgc 2772
Query: 715 t------cgcggcggaggcggcggtcggcgaggacgaacaggccgaagggccccagcgcg 768
| | | |||| |||| ||||||||| || | ||| |||||||| ||||| |||
Sbjct: 2771 tccccatccccgcggtggcgcttgtcggcgagcaccagcagcccgaaggggcccagggcg 2712
Query: 769 ccgcggccggcggcgcccccgctggtgctgcagttgtagcccacgtccgcctcgttgagc 828
|| |||||||| ||||| ||||||||||||||||||||||| ||||| |||||| || |
Sbjct: 2711 ccccggccggccgcgccgccgctggtgctgcagttgtagccgacgtcggcctcgagga-c 2653
Query: 829 gacat-gacggcgcggcggtccagctggaactccgcctcgatgtccagctgggtggcgcg 887
| | | ||||||| | |||| ||||||||||| || |||||| ||||| ||||||||
Sbjct: 2652 ggcgtcgacggcgagcgggtcgagctggaactcggcgaggatgtcgagctgcgtggcgcg 2593
Query: 888 gcggaggttgagcgggaacacggagccgtagtcgatggtgatgccgctgaggtcggtgga 947
| |||||||||||||||| |||||| ||||||||| ||||||||||| || |||||||||
Sbjct: 2592 gtggaggttgagcgggaagacggaggcgtagtcgacggtgatgccgccgaagtcggtgga 2533
Query: 948 gttggtgcgcagcgtctccacctcctccacgggccactgaagcaggttgctgcccgtctt 1007
|||||||||||||||||||||||||||||| ||||| || ||||||||||| ||||||||
Sbjct: 2532 gttggtgcgcagcgtctccacctcctccaccggccattgcagcaggttgctccccgtctt 2473
Query: 1008 ggtgtccag 1016
|||||||||
Sbjct: 2472 ggtgtccag 2464
Score = 349 bits (176), Expect = 3e-093
Identities = 397/470 (84%), Gaps = 3/470 (0%)
Strand = Plus / Minus
Query: 1381 gggtagaagtcgatgcactcccacatgccggtgccgtcgacgcggtgcagcaggcccggg 1440
|||||||||||||||||||||||||| || ||| | ||||||||||| || |||||||||
Sbjct: 1121 gggtagaagtcgatgcactcccacatccccgtggcctcgacgcggtggaggaggcccggg 1062
Query: 1441 aggagctcgaagtgcaccaggtccgtggtgcggtagacgacggcgatgcccgcgtggccg 1500
||||| ||| || || | ||| | |||||||||||||||||||||||| ||||||
Sbjct: 1061 aggaggtcgtaggtgacgaagtcggcggtgcggtagacgacggcgatgccggcgtgg--- 1005
Query: 1501 tcgtcgtccttggagccgatgacgacgcgccatgcgccgtccgaggggtcgatccagacc 1560
| |||||||||||||||||||||| ||||| ||||||| ||||||||| |||| |
Sbjct: 1004 tgctcgtccttggagccgatgacgatccgccagtcgccgtcggaggggtcgcgccaggcg 945
Query: 1561 gtggtggggtcgcggaagtccttgggcccgatgcccgggggcgggtacagcaccgggttg 1620
|||||||||||||||||||| | |||||| |||| ||||| || || ||||||
Sbjct: 944 gtggtggggtcgcggaagtcgcggtcgccgatggtgcggggagggtagaggacggggttg 885
Query: 1621 ccctcgtacttggtccagttggtgagcagcgggtcggcgtcgtcggcgggcacggccagg 1680
| | ||||||||||||||||||||| || |||||| || ||||| ||| ||||| |||
Sbjct: 884 gcgtggtacttggtccagttggtgaggagggggtcgtcggggtcggaggggacggcgagg 825
Query: 1681 cactgcacctggacggaggcgttggtggagcccctgtagagcattgcgaggcggccgtcg 1740
||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 824 cactggacctggacggaggcgttggtggagccggtgtagagcatggcgaggcggccgtcg 765
Query: 1741 gggagcgtggtggcggaccccgtccacacgccgttggtgtcgtaccactggtcgggcacc 1800
||||| ||||||||||| || ||||| ||||||||| |||||||||||||||||| |||
Sbjct: 764 gggagggtggtggcggagccggtccagacgccgttgacgtcgtaccactggtcgggaacc 705
Query: 1801 atggccagcgggaggcggcgccagcggatcaggtcgcgggacacggcgtg 1850
||||| || |||||| |||||||| ||| |||||||||||||| |||||
Sbjct: 704 atggcgagggggaggtggcgccagtggacgaggtcgcgggacaccgcgtg 655
Score = 252 bits (127), Expect = 6e-064
Identities = 217/247 (87%)
Strand = Plus / Minus
Query: 1048 gcccatcccttggacacgtccgcgcgctccgagtctgtctcgccgacccatccccacagc 1107
||||| ||||||| ||||| |||||||| ||||| |||||||||||||| ||||| ||
Sbjct: 1430 gcccaacccttggcgacgtcggcgcgctcggagtcggtctcgccgacccaaccccagagg 1371
Query: 1108 acgcggcggcgcttggccgggtcgtagaacgtcttggacgcgtagaacttgccccagtcg 1167
|||||||||||||||||||| |||||||| |||||||| || ||||||||||||||||||
Sbjct: 1370 acgcggcggcgcttggccggatcgtagaaggtcttggaggcatagaacttgccccagtcg 1311
Query: 1168 tagcgcaggccgatgccgacgtccctgccggcgtcgatcggcgtccaggcgttggcggcc 1227
||||| ||||||||||||||||| | ||||||| | ||||||||| ||||| |||
Sbjct: 1310 tagcggaggccgatgccgacgtcggcggcggcgtccagcggcgtccacgcgttcctcgcc 1251
Query: 1228 gcgtcgtacctccccagcgcgtagtagtcgtggcggtcgtcgtccatgctggccttcatg 1287
| ||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||
Sbjct: 1250 gggtcgtacctccccagcgcgtagtagtcatggcgatcgtcgtccatgctcgccttcatc 1191
Query: 1288 acgtgca 1294
|||||||
Sbjct: 1190 acgtgca 1184
>ref|NT_107175.1| Oryza sativa (japonica cultivar-group)
Length = 2882457
Score = 531 bits (268), Expect = e-148
Identities = 571/669 (85%), Gaps = 11/669 (1%)
Strand = Plus / Minus
Query: 355 gccatgtagtcgtggttgtatgacgagtccatctcgtggacgacgagcttcgtggccgtg 414
||||||||| | |||||||| || ||||||||||||||||||||||||||| ||||||||
Sbjct: 346515 gccatgtaggcttggttgtaggaggagtccatctcgtggacgacgagcttcttggccgtg 346456
Query: 415 acccgcgcggcggtggcgttgttgaagaggaagacgccggcgttggcgtagatggcctcg 474
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346455 acgcgcgcgctggtggcgttgttgaagaggaagacgccggcgttggcgtagatggcctcc 346396
Query: 475 gtggggtagacgcgcgatgtggcggtggacctcccgccctgcgcgaagctctcgacgatg 534
|||||||| || ||||| || || ||||||||||| ||||||||||||||||||||||||
Sbjct: 346395 gtggggtacacccgcgacgtcgccgtggacctccccccctgcgcgaagctctcgacgatg 346336
Query: 535 gagtggtcgacgagcacccggagcgagagcgtggcctcgtcctccagcacggggacggcg 594
||||||||||||||||||||||| |||| || |||| | || ||||| |||||| ||
Sbjct: 346335 gagtggtcgacgagcacccggagggagaaggt---ctcgccgtcgagcaccgggacgacg 346279
Query: 595 ctgccgacgacgcgcttgacgatgtcggtggcgctggaggagcgggactcgtcctggcag 654
|||||||||| | ||||||||||||| |||| || || | |||||||||||||||
Sbjct: 346278 ttgccgacgaccctcttgacgatgtcgtcggcgtgcgacgacctcgactcgtcctggcag 346219
Query: 655 aagtgcgtggcgagggagccgtccaggcccttggccacgtagaagtagacggccgtctgc 714
|||||||| | || | |||||| |||||||||||||||||||| ||||| ||||||
Sbjct: 346218 aagtgcgtcgtgacgccgccgtcgctccccttggccacgtagaagtacacggcggtctgc 346159
Query: 715 t------cgcggcggaggcggcggtcggcgaggacgaacaggccgaagggccccagcgcg 768
| | | |||| |||| ||||||||| || | ||| |||||||| ||||| |||
Sbjct: 346158 tccccatccccgcggtggcgcttgtcggcgagcaccagcagcccgaaggggcccagggcg 346099
Query: 769 ccgcggccggcggcgcccccgctggtgctgcagttgtagcccacgtccgcctcgttgagc 828
|| |||||||| ||||| ||||||||||||||||||||||| ||||| |||||| || |
Sbjct: 346098 ccccggccggccgcgccgccgctggtgctgcagttgtagccgacgtcggcctcgagga-c 346040
Query: 829 gacat-gacggcgcggcggtccagctggaactccgcctcgatgtccagctgggtggcgcg 887
| | | ||||||| | |||| ||||||||||| || |||||| ||||| ||||||||
Sbjct: 346039 ggcgtcgacggcgagcgggtcgagctggaactcggcgaggatgtcgagctgcgtggcgcg 345980
Query: 888 gcggaggttgagcgggaacacggagccgtagtcgatggtgatgccgctgaggtcggtgga 947
| |||||||||||||||| |||||| ||||||||| ||||||||||| || |||||||||
Sbjct: 345979 gtggaggttgagcgggaagacggaggcgtagtcgacggtgatgccgccgaagtcggtgga 345920
Query: 948 gttggtgcgcagcgtctccacctcctccacgggccactgaagcaggttgctgcccgtctt 1007
|||||||||||||||||||||||||||||| ||||| || ||||||||||| ||||||||
Sbjct: 345919 gttggtgcgcagcgtctccacctcctccaccggccattgcagcaggttgctccccgtctt 345860
Query: 1008 ggtgtccag 1016
|||||||||
Sbjct: 345859 ggtgtccag 345851
Score = 349 bits (176), Expect = 3e-093
Identities = 397/470 (84%), Gaps = 3/470 (0%)
Strand = Plus / Minus
Query: 1381 gggtagaagtcgatgcactcccacatgccggtgccgtcgacgcggtgcagcaggcccggg 1440
|||||||||||||||||||||||||| || ||| | ||||||||||| || |||||||||
Sbjct: 344508 gggtagaagtcgatgcactcccacatccccgtggcctcgacgcggtggaggaggcccggg 344449
Query: 1441 aggagctcgaagtgcaccaggtccgtggtgcggtagacgacggcgatgcccgcgtggccg 1500
||||| ||| || || | ||| | |||||||||||||||||||||||| ||||||
Sbjct: 344448 aggaggtcgtaggtgacgaagtcggcggtgcggtagacgacggcgatgccggcgtgg--- 344392
Query: 1501 tcgtcgtccttggagccgatgacgacgcgccatgcgccgtccgaggggtcgatccagacc 1560
| |||||||||||||||||||||| ||||| ||||||| ||||||||| |||| |
Sbjct: 344391 tgctcgtccttggagccgatgacgatccgccagtcgccgtcggaggggtcgcgccaggcg 344332
Query: 1561 gtggtggggtcgcggaagtccttgggcccgatgcccgggggcgggtacagcaccgggttg 1620
|||||||||||||||||||| | |||||| |||| ||||| || || ||||||
Sbjct: 344331 gtggtggggtcgcggaagtcgcggtcgccgatggtgcggggagggtagaggacggggttg 344272
Query: 1621 ccctcgtacttggtccagttggtgagcagcgggtcggcgtcgtcggcgggcacggccagg 1680
| | ||||||||||||||||||||| || |||||| || ||||| ||| ||||| |||
Sbjct: 344271 gcgtggtacttggtccagttggtgaggagggggtcgtcggggtcggaggggacggcgagg 344212
Query: 1681 cactgcacctggacggaggcgttggtggagcccctgtagagcattgcgaggcggccgtcg 1740
||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 344211 cactggacctggacggaggcgttggtggagccggtgtagagcatggcgaggcggccgtcg 344152
Query: 1741 gggagcgtggtggcggaccccgtccacacgccgttggtgtcgtaccactggtcgggcacc 1800
||||| ||||||||||| || ||||| ||||||||| |||||||||||||||||| |||
Sbjct: 344151 gggagggtggtggcggagccggtccagacgccgttgacgtcgtaccactggtcgggaacc 344092
Query: 1801 atggccagcgggaggcggcgccagcggatcaggtcgcgggacacggcgtg 1850
||||| || |||||| |||||||| ||| |||||||||||||| |||||
Sbjct: 344091 atggcgagggggaggtggcgccagtggacgaggtcgcgggacaccgcgtg 344042
Score = 252 bits (127), Expect = 6e-064
Identities = 217/247 (87%)
Strand = Plus / Minus
Query: 1048 gcccatcccttggacacgtccgcgcgctccgagtctgtctcgccgacccatccccacagc 1107
||||| ||||||| ||||| |||||||| ||||| |||||||||||||| ||||| ||
Sbjct: 344817 gcccaacccttggcgacgtcggcgcgctcggagtcggtctcgccgacccaaccccagagg 344758
Query: 1108 acgcggcggcgcttggccgggtcgtagaacgtcttggacgcgtagaacttgccccagtcg 1167
|||||||||||||||||||| |||||||| |||||||| || ||||||||||||||||||
Sbjct: 344757 acgcggcggcgcttggccggatcgtagaaggtcttggaggcatagaacttgccccagtcg 344698
Query: 1168 tagcgcaggccgatgccgacgtccctgccggcgtcgatcggcgtccaggcgttggcggcc 1227
||||| ||||||||||||||||| | ||||||| | ||||||||| ||||| |||
Sbjct: 344697 tagcggaggccgatgccgacgtcggcggcggcgtccagcggcgtccacgcgttcctcgcc 344638
Query: 1228 gcgtcgtacctccccagcgcgtagtagtcgtggcggtcgtcgtccatgctggccttcatg 1287
| ||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||
Sbjct: 344637 gggtcgtacctccccagcgcgtagtagtcatggcgatcgtcgtccatgctcgccttcatc 344578
Query: 1288 acgtgca 1294
|||||||
Sbjct: 344577 acgtgca 344571
>gb|CH401169.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000006
genomic scaffold, whole genome shotgun sequence
Length = 13452964
Score = 531 bits (268), Expect = e-148
Identities = 571/669 (85%), Gaps = 11/669 (1%)
Strand = Plus / Minus
Query: 355 gccatgtagtcgtggttgtatgacgagtccatctcgtggacgacgagcttcgtggccgtg 414
||||||||| | |||||||| || ||||||||||||||||||||||||||| ||||||||
Sbjct: 330946 gccatgtaggcttggttgtaggaggagtccatctcgtggacgacgagcttcttggccgtg 330887
Query: 415 acccgcgcggcggtggcgttgttgaagaggaagacgccggcgttggcgtagatggcctcg 474
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330886 acgcgcgcgctggtggcgttgttgaagaggaagacgccggcgttggcgtagatggcctcc 330827
Query: 475 gtggggtagacgcgcgatgtggcggtggacctcccgccctgcgcgaagctctcgacgatg 534
|||||||| || ||||| || || ||||||||||| ||||||||||||||||||||||||
Sbjct: 330826 gtggggtacacccgcgacgtcgccgtggacctccccccctgcgcgaagctctcgacgatg 330767
Query: 535 gagtggtcgacgagcacccggagcgagagcgtggcctcgtcctccagcacggggacggcg 594
||||||||||||||||||||||| |||| || |||| | || ||||| |||||| ||
Sbjct: 330766 gagtggtcgacgagcacccggagggagaaggt---ctcgccgtcgagcaccgggacgacg 330710
Query: 595 ctgccgacgacgcgcttgacgatgtcggtggcgctggaggagcgggactcgtcctggcag 654
|||||||||| | ||||||||||||| |||| || || | |||||||||||||||
Sbjct: 330709 ttgccgacgaccctcttgacgatgtcgtcggcgtgcgacgacctcgactcgtcctggcag 330650
Query: 655 aagtgcgtggcgagggagccgtccaggcccttggccacgtagaagtagacggccgtctgc 714
|||||||| | || | |||||| |||||||||||||||||||| ||||| ||||||
Sbjct: 330649 aagtgcgtcgtgacgccgccgtcgctccccttggccacgtagaagtacacggcggtctgc 330590
Query: 715 t------cgcggcggaggcggcggtcggcgaggacgaacaggccgaagggccccagcgcg 768
| | | |||| |||| ||||||||| || | ||| |||||||| ||||| |||
Sbjct: 330589 tccccatccccgcggtggcgcttgtcggcgagcaccagcagcccgaaggggcccagggcg 330530
Query: 769 ccgcggccggcggcgcccccgctggtgctgcagttgtagcccacgtccgcctcgttgagc 828
|| |||||||| ||||| ||||||||||||||||||||||| ||||| |||||| || |
Sbjct: 330529 ccccggccggccgcgccgccgctggtgctgcagttgtagccgacgtcggcctcgagga-c 330471
Query: 829 gacat-gacggcgcggcggtccagctggaactccgcctcgatgtccagctgggtggcgcg 887
| | | ||||||| | |||| ||||||||||| || |||||| ||||| ||||||||
Sbjct: 330470 ggcgtcgacggcgagcgggtcgagctggaactcggcgaggatgtcgagctgcgtggcgcg 330411
Query: 888 gcggaggttgagcgggaacacggagccgtagtcgatggtgatgccgctgaggtcggtgga 947
| |||||||||||||||| |||||| ||||||||| ||||||||||| || |||||||||
Sbjct: 330410 gtggaggttgagcgggaagacggaggcgtagtcgacggtgatgccgccgaagtcggtgga 330351
Query: 948 gttggtgcgcagcgtctccacctcctccacgggccactgaagcaggttgctgcccgtctt 1007
|||||||||||||||||||||||||||||| ||||| || ||||||||||| ||||||||
Sbjct: 330350 gttggtgcgcagcgtctccacctcctccaccggccattgcagcaggttgctccccgtctt 330291
Query: 1008 ggtgtccag 1016
|||||||||
Sbjct: 330290 ggtgtccag 330282
Score = 349 bits (176), Expect = 3e-093
Identities = 397/470 (84%), Gaps = 3/470 (0%)
Strand = Plus / Minus
Query: 1381 gggtagaagtcgatgcactcccacatgccggtgccgtcgacgcggtgcagcaggcccggg 1440
|||||||||||||||||||||||||| || ||| | ||||||||||| || |||||||||
Sbjct: 328939 gggtagaagtcgatgcactcccacatccccgtggcctcgacgcggtggaggaggcccggg 328880
Query: 1441 aggagctcgaagtgcaccaggtccgtggtgcggtagacgacggcgatgcccgcgtggccg 1500
||||| ||| || || | ||| | |||||||||||||||||||||||| ||||||
Sbjct: 328879 aggaggtcgtaggtgacgaagtcggcggtgcggtagacgacggcgatgccggcgtgg--- 328823
Query: 1501 tcgtcgtccttggagccgatgacgacgcgccatgcgccgtccgaggggtcgatccagacc 1560
| |||||||||||||||||||||| ||||| ||||||| ||||||||| |||| |
Sbjct: 328822 tgctcgtccttggagccgatgacgatccgccagtcgccgtcggaggggtcgcgccaggcg 328763
Query: 1561 gtggtggggtcgcggaagtccttgggcccgatgcccgggggcgggtacagcaccgggttg 1620
|||||||||||||||||||| | |||||| |||| ||||| || || ||||||
Sbjct: 328762 gtggtggggtcgcggaagtcgcggtcgccgatggtgcggggagggtagaggacggggttg 328703
Query: 1621 ccctcgtacttggtccagttggtgagcagcgggtcggcgtcgtcggcgggcacggccagg 1680
| | ||||||||||||||||||||| || |||||| || ||||| ||| ||||| |||
Sbjct: 328702 gcgtggtacttggtccagttggtgaggagggggtcgtcggggtcggaggggacggcgagg 328643
Query: 1681 cactgcacctggacggaggcgttggtggagcccctgtagagcattgcgaggcggccgtcg 1740
||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 328642 cactggacctggacggaggcgttggtggagccggtgtagagcatggcgaggcggccgtcg 328583
Query: 1741 gggagcgtggtggcggaccccgtccacacgccgttggtgtcgtaccactggtcgggcacc 1800
||||| ||||||||||| || ||||| ||||||||| |||||||||||||||||| |||
Sbjct: 328582 gggagggtggtggcggagccggtccagacgccgttgacgtcgtaccactggtcgggaacc 328523
Query: 1801 atggccagcgggaggcggcgccagcggatcaggtcgcgggacacggcgtg 1850
||||| || |||||| |||||||| ||| |||||||||||||| |||||
Sbjct: 328522 atggcgagggggaggtggcgccagtggacgaggtcgcgggacaccgcgtg 328473
Score = 252 bits (127), Expect = 6e-064
Identities = 217/247 (87%)
Strand = Plus / Minus
Query: 1048 gcccatcccttggacacgtccgcgcgctccgagtctgtctcgccgacccatccccacagc 1107
||||| ||||||| ||||| |||||||| ||||| |||||||||||||| ||||| ||
Sbjct: 329248 gcccaacccttggcgacgtcggcgcgctcggagtcggtctcgccgacccaaccccagagg 329189
Query: 1108 acgcggcggcgcttggccgggtcgtagaacgtcttggacgcgtagaacttgccccagtcg 1167
|||||||||||||||||||| |||||||| |||||||| || ||||||||||||||||||
Sbjct: 329188 acgcggcggcgcttggccggatcgtagaaggtcttggaggcatagaacttgccccagtcg 329129
Query: 1168 tagcgcaggccgatgccgacgtccctgccggcgtcgatcggcgtccaggcgttggcggcc 1227
||||| ||||||||||||||||| | ||||||| | ||||||||| ||||| |||
Sbjct: 329128 tagcggaggccgatgccgacgtcggcggcggcgtccagcggcgtccacgcgttcctcgcc 329069
Query: 1228 gcgtcgtacctccccagcgcgtagtagtcgtggcggtcgtcgtccatgctggccttcatg 1287
| ||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||
Sbjct: 329068 gggtcgtacctccccagcgcgtagtagtcatggcgatcgtcgtccatgctcgccttcatc 329009
Query: 1288 acgtgca 1294
|||||||
Sbjct: 329008 acgtgca 329002
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 531 bits (268), Expect = e-148
Identities = 571/669 (85%), Gaps = 11/669 (1%)
Strand = Plus / Minus
Query: 355 gccatgtagtcgtggttgtatgacgagtccatctcgtggacgacgagcttcgtggccgtg 414
||||||||| | |||||||| || ||||||||||||||||||||||||||| ||||||||
Sbjct: 330946 gccatgtaggcttggttgtaggaggagtccatctcgtggacgacgagcttcttggccgtg 330887
Query: 415 acccgcgcggcggtggcgttgttgaagaggaagacgccggcgttggcgtagatggcctcg 474
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330886 acgcgcgcgctggtggcgttgttgaagaggaagacgccggcgttggcgtagatggcctcc 330827
Query: 475 gtggggtagacgcgcgatgtggcggtggacctcccgccctgcgcgaagctctcgacgatg 534
|||||||| || ||||| || || ||||||||||| ||||||||||||||||||||||||
Sbjct: 330826 gtggggtacacccgcgacgtcgccgtggacctccccccctgcgcgaagctctcgacgatg 330767
Query: 535 gagtggtcgacgagcacccggagcgagagcgtggcctcgtcctccagcacggggacggcg 594
||||||||||||||||||||||| |||| || |||| | || ||||| |||||| ||
Sbjct: 330766 gagtggtcgacgagcacccggagggagaaggt---ctcgccgtcgagcaccgggacgacg 330710
Query: 595 ctgccgacgacgcgcttgacgatgtcggtggcgctggaggagcgggactcgtcctggcag 654
|||||||||| | ||||||||||||| |||| || || | |||||||||||||||
Sbjct: 330709 ttgccgacgaccctcttgacgatgtcgtcggcgtgcgacgacctcgactcgtcctggcag 330650
Query: 655 aagtgcgtggcgagggagccgtccaggcccttggccacgtagaagtagacggccgtctgc 714
|||||||| | || | |||||| |||||||||||||||||||| ||||| ||||||
Sbjct: 330649 aagtgcgtcgtgacgccgccgtcgctccccttggccacgtagaagtacacggcggtctgc 330590
Query: 715 t------cgcggcggaggcggcggtcggcgaggacgaacaggccgaagggccccagcgcg 768
| | | |||| |||| ||||||||| || | ||| |||||||| ||||| |||
Sbjct: 330589 tccccatccccgcggtggcgcttgtcggcgagcaccagcagcccgaaggggcccagggcg 330530
Query: 769 ccgcggccggcggcgcccccgctggtgctgcagttgtagcccacgtccgcctcgttgagc 828
|| |||||||| ||||| ||||||||||||||||||||||| ||||| |||||| || |
Sbjct: 330529 ccccggccggccgcgccgccgctggtgctgcagttgtagccgacgtcggcctcgagga-c 330471
Query: 829 gacat-gacggcgcggcggtccagctggaactccgcctcgatgtccagctgggtggcgcg 887
| | | ||||||| | |||| ||||||||||| || |||||| ||||| ||||||||
Sbjct: 330470 ggcgtcgacggcgagcgggtcgagctggaactcggcgaggatgtcgagctgcgtggcgcg 330411
Query: 888 gcggaggttgagcgggaacacggagccgtagtcgatggtgatgccgctgaggtcggtgga 947
| |||||||||||||||| |||||| ||||||||| ||||||||||| || |||||||||
Sbjct: 330410 gtggaggttgagcgggaagacggaggcgtagtcgacggtgatgccgccgaagtcggtgga 330351
Query: 948 gttggtgcgcagcgtctccacctcctccacgggccactgaagcaggttgctgcccgtctt 1007
|||||||||||||||||||||||||||||| ||||| || ||||||||||| ||||||||
Sbjct: 330350 gttggtgcgcagcgtctccacctcctccaccggccattgcagcaggttgctccccgtctt 330291
Query: 1008 ggtgtccag 1016
|||||||||
Sbjct: 330290 ggtgtccag 330282
Score = 349 bits (176), Expect = 3e-093
Identities = 397/470 (84%), Gaps = 3/470 (0%)
Strand = Plus / Minus
Query: 1381 gggtagaagtcgatgcactcccacatgccggtgccgtcgacgcggtgcagcaggcccggg 1440
|||||||||||||||||||||||||| || ||| | ||||||||||| || |||||||||
Sbjct: 328939 gggtagaagtcgatgcactcccacatccccgtggcctcgacgcggtggaggaggcccggg 328880
Query: 1441 aggagctcgaagtgcaccaggtccgtggtgcggtagacgacggcgatgcccgcgtggccg 1500
||||| ||| || || | ||| | |||||||||||||||||||||||| ||||||
Sbjct: 328879 aggaggtcgtaggtgacgaagtcggcggtgcggtagacgacggcgatgccggcgtgg--- 328823
Query: 1501 tcgtcgtccttggagccgatgacgacgcgccatgcgccgtccgaggggtcgatccagacc 1560
| |||||||||||||||||||||| ||||| ||||||| ||||||||| |||| |
Sbjct: 328822 tgctcgtccttggagccgatgacgatccgccagtcgccgtcggaggggtcgcgccaggcg 328763
Query: 1561 gtggtggggtcgcggaagtccttgggcccgatgcccgggggcgggtacagcaccgggttg 1620
|||||||||||||||||||| | |||||| |||| ||||| || || ||||||
Sbjct: 328762 gtggtggggtcgcggaagtcgcggtcgccgatggtgcggggagggtagaggacggggttg 328703
Query: 1621 ccctcgtacttggtccagttggtgagcagcgggtcggcgtcgtcggcgggcacggccagg 1680
| | ||||||||||||||||||||| || |||||| || ||||| ||| ||||| |||
Sbjct: 328702 gcgtggtacttggtccagttggtgaggagggggtcgtcggggtcggaggggacggcgagg 328643
Query: 1681 cactgcacctggacggaggcgttggtggagcccctgtagagcattgcgaggcggccgtcg 1740
||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 328642 cactggacctggacggaggcgttggtggagccggtgtagagcatggcgaggcggccgtcg 328583
Query: 1741 gggagcgtggtggcggaccccgtccacacgccgttggtgtcgtaccactggtcgggcacc 1800
||||| ||||||||||| || ||||| ||||||||| |||||||||||||||||| |||
Sbjct: 328582 gggagggtggtggcggagccggtccagacgccgttgacgtcgtaccactggtcgggaacc 328523
Query: 1801 atggccagcgggaggcggcgccagcggatcaggtcgcgggacacggcgtg 1850
||||| || |||||| |||||||| ||| |||||||||||||| |||||
Sbjct: 328522 atggcgagggggaggtggcgccagtggacgaggtcgcgggacaccgcgtg 328473
Score = 252 bits (127), Expect = 6e-064
Identities = 217/247 (87%)
Strand = Plus / Minus
Query: 1048 gcccatcccttggacacgtccgcgcgctccgagtctgtctcgccgacccatccccacagc 1107
||||| ||||||| ||||| |||||||| ||||| |||||||||||||| ||||| ||
Sbjct: 329248 gcccaacccttggcgacgtcggcgcgctcggagtcggtctcgccgacccaaccccagagg 329189
Query: 1108 acgcggcggcgcttggccgggtcgtagaacgtcttggacgcgtagaacttgccccagtcg 1167
|||||||||||||||||||| |||||||| |||||||| || ||||||||||||||||||
Sbjct: 329188 acgcggcggcgcttggccggatcgtagaaggtcttggaggcatagaacttgccccagtcg 329129
Query: 1168 tagcgcaggccgatgccgacgtccctgccggcgtcgatcggcgtccaggcgttggcggcc 1227
||||| ||||||||||||||||| | ||||||| | ||||||||| ||||| |||
Sbjct: 329128 tagcggaggccgatgccgacgtcggcggcggcgtccagcggcgtccacgcgttcctcgcc 329069
Query: 1228 gcgtcgtacctccccagcgcgtagtagtcgtggcggtcgtcgtccatgctggccttcatg 1287
| ||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||
Sbjct: 329068 gggtcgtacctccccagcgcgtagtagtcatggcgatcgtcgtccatgctcgccttcatc 329009
Query: 1288 acgtgca 1294
|||||||
Sbjct: 329008 acgtgca 329002
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
complete sequence
Length = 35954743
Score = 531 bits (268), Expect = e-148
Identities = 571/669 (85%), Gaps = 11/669 (1%)
Strand = Plus / Minus
Query: 355 gccatgtagtcgtggttgtatgacgagtccatctcgtggacgacgagcttcgtggccgtg 414
||||||||| | |||||||| || ||||||||||||||||||||||||||| ||||||||
Sbjct: 346515 gccatgtaggcttggttgtaggaggagtccatctcgtggacgacgagcttcttggccgtg 346456
Query: 415 acccgcgcggcggtggcgttgttgaagaggaagacgccggcgttggcgtagatggcctcg 474
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346455 acgcgcgcgctggtggcgttgttgaagaggaagacgccggcgttggcgtagatggcctcc 346396
Query: 475 gtggggtagacgcgcgatgtggcggtggacctcccgccctgcgcgaagctctcgacgatg 534
|||||||| || ||||| || || ||||||||||| ||||||||||||||||||||||||
Sbjct: 346395 gtggggtacacccgcgacgtcgccgtggacctccccccctgcgcgaagctctcgacgatg 346336
Query: 535 gagtggtcgacgagcacccggagcgagagcgtggcctcgtcctccagcacggggacggcg 594
||||||||||||||||||||||| |||| || |||| | || ||||| |||||| ||
Sbjct: 346335 gagtggtcgacgagcacccggagggagaaggt---ctcgccgtcgagcaccgggacgacg 346279
Query: 595 ctgccgacgacgcgcttgacgatgtcggtggcgctggaggagcgggactcgtcctggcag 654
|||||||||| | ||||||||||||| |||| || || | |||||||||||||||
Sbjct: 346278 ttgccgacgaccctcttgacgatgtcgtcggcgtgcgacgacctcgactcgtcctggcag 346219
Query: 655 aagtgcgtggcgagggagccgtccaggcccttggccacgtagaagtagacggccgtctgc 714
|||||||| | || | |||||| |||||||||||||||||||| ||||| ||||||
Sbjct: 346218 aagtgcgtcgtgacgccgccgtcgctccccttggccacgtagaagtacacggcggtctgc 346159
Query: 715 t------cgcggcggaggcggcggtcggcgaggacgaacaggccgaagggccccagcgcg 768
| | | |||| |||| ||||||||| || | ||| |||||||| ||||| |||
Sbjct: 346158 tccccatccccgcggtggcgcttgtcggcgagcaccagcagcccgaaggggcccagggcg 346099
Query: 769 ccgcggccggcggcgcccccgctggtgctgcagttgtagcccacgtccgcctcgttgagc 828
|| |||||||| ||||| ||||||||||||||||||||||| ||||| |||||| || |
Sbjct: 346098 ccccggccggccgcgccgccgctggtgctgcagttgtagccgacgtcggcctcgagga-c 346040
Query: 829 gacat-gacggcgcggcggtccagctggaactccgcctcgatgtccagctgggtggcgcg 887
| | | ||||||| | |||| ||||||||||| || |||||| ||||| ||||||||
Sbjct: 346039 ggcgtcgacggcgagcgggtcgagctggaactcggcgaggatgtcgagctgcgtggcgcg 345980
Query: 888 gcggaggttgagcgggaacacggagccgtagtcgatggtgatgccgctgaggtcggtgga 947
| |||||||||||||||| |||||| ||||||||| ||||||||||| || |||||||||
Sbjct: 345979 gtggaggttgagcgggaagacggaggcgtagtcgacggtgatgccgccgaagtcggtgga 345920
Query: 948 gttggtgcgcagcgtctccacctcctccacgggccactgaagcaggttgctgcccgtctt 1007
|||||||||||||||||||||||||||||| ||||| || ||||||||||| ||||||||
Sbjct: 345919 gttggtgcgcagcgtctccacctcctccaccggccattgcagcaggttgctccccgtctt 345860
Query: 1008 ggtgtccag 1016
|||||||||
Sbjct: 345859 ggtgtccag 345851
Score = 349 bits (176), Expect = 3e-093
Identities = 397/470 (84%), Gaps = 3/470 (0%)
Strand = Plus / Minus
Query: 1381 gggtagaagtcgatgcactcccacatgccggtgccgtcgacgcggtgcagcaggcccggg 1440
|||||||||||||||||||||||||| || ||| | ||||||||||| || |||||||||
Sbjct: 344508 gggtagaagtcgatgcactcccacatccccgtggcctcgacgcggtggaggaggcccggg 344449
Query: 1441 aggagctcgaagtgcaccaggtccgtggtgcggtagacgacggcgatgcccgcgtggccg 1500
||||| ||| || || | ||| | |||||||||||||||||||||||| ||||||
Sbjct: 344448 aggaggtcgtaggtgacgaagtcggcggtgcggtagacgacggcgatgccggcgtgg--- 344392
Query: 1501 tcgtcgtccttggagccgatgacgacgcgccatgcgccgtccgaggggtcgatccagacc 1560
| |||||||||||||||||||||| ||||| ||||||| ||||||||| |||| |
Sbjct: 344391 tgctcgtccttggagccgatgacgatccgccagtcgccgtcggaggggtcgcgccaggcg 344332
Query: 1561 gtggtggggtcgcggaagtccttgggcccgatgcccgggggcgggtacagcaccgggttg 1620
|||||||||||||||||||| | |||||| |||| ||||| || || ||||||
Sbjct: 344331 gtggtggggtcgcggaagtcgcggtcgccgatggtgcggggagggtagaggacggggttg 344272
Query: 1621 ccctcgtacttggtccagttggtgagcagcgggtcggcgtcgtcggcgggcacggccagg 1680
| | ||||||||||||||||||||| || |||||| || ||||| ||| ||||| |||
Sbjct: 344271 gcgtggtacttggtccagttggtgaggagggggtcgtcggggtcggaggggacggcgagg 344212
Query: 1681 cactgcacctggacggaggcgttggtggagcccctgtagagcattgcgaggcggccgtcg 1740
||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 344211 cactggacctggacggaggcgttggtggagccggtgtagagcatggcgaggcggccgtcg 344152
Query: 1741 gggagcgtggtggcggaccccgtccacacgccgttggtgtcgtaccactggtcgggcacc 1800
||||| ||||||||||| || ||||| ||||||||| |||||||||||||||||| |||
Sbjct: 344151 gggagggtggtggcggagccggtccagacgccgttgacgtcgtaccactggtcgggaacc 344092
Query: 1801 atggccagcgggaggcggcgccagcggatcaggtcgcgggacacggcgtg 1850
||||| || |||||| |||||||| ||| |||||||||||||| |||||
Sbjct: 344091 atggcgagggggaggtggcgccagtggacgaggtcgcgggacaccgcgtg 344042
Score = 252 bits (127), Expect = 6e-064
Identities = 217/247 (87%)
Strand = Plus / Minus
Query: 1048 gcccatcccttggacacgtccgcgcgctccgagtctgtctcgccgacccatccccacagc 1107
||||| ||||||| ||||| |||||||| ||||| |||||||||||||| ||||| ||
Sbjct: 344817 gcccaacccttggcgacgtcggcgcgctcggagtcggtctcgccgacccaaccccagagg 344758
Query: 1108 acgcggcggcgcttggccgggtcgtagaacgtcttggacgcgtagaacttgccccagtcg 1167
|||||||||||||||||||| |||||||| |||||||| || ||||||||||||||||||
Sbjct: 344757 acgcggcggcgcttggccggatcgtagaaggtcttggaggcatagaacttgccccagtcg 344698
Query: 1168 tagcgcaggccgatgccgacgtccctgccggcgtcgatcggcgtccaggcgttggcggcc 1227
||||| ||||||||||||||||| | ||||||| | ||||||||| ||||| |||
Sbjct: 344697 tagcggaggccgatgccgacgtcggcggcggcgtccagcggcgtccacgcgttcctcgcc 344638
Query: 1228 gcgtcgtacctccccagcgcgtagtagtcgtggcggtcgtcgtccatgctggccttcatg 1287
| ||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||
Sbjct: 344637 gggtcgtacctccccagcgcgtagtagtcatggcgatcgtcgtccatgctcgccttcatc 344578
Query: 1288 acgtgca 1294
|||||||
Sbjct: 344577 acgtgca 344571
>gb|C25279.1|C25279 C25279 Rice shoot Oryza sativa (japonica cultivar-group) cDNA clone
S5777_1A, mRNA sequence
Length = 293
Score = 280 bits (141), Expect = 3e-072
Identities = 191/208 (91%)
Strand = Plus / Minus
Query: 355 gccatgtagtcgtggttgtatgacgagtccatctcgtggacgacgagcttcgtggccgtg 414
||||||||| | |||||||| || ||||||||||||||||||||||||||| |||||||
Sbjct: 214 gccatgtaggcttggttgtaggaggagtccatctcgtggacgacgagcttcttggccgtn 155
Query: 415 acccgcgcggcggtggcgttgttgaagaggaagacgccggcgttggcgtagatggcctcg 474
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 acgcgcgcgctggtggcgttgttgaagaggaagacgccggcgttggcgtagatggcctcc 95
Query: 475 gtggggtagacgcgcgatgtggcggtggacctcccgccctgcgcgaagctctcgacgatg 534
|||||||| || ||||| || || ||||||||||| ||||||||||||||||||||||||
Sbjct: 94 gtggggtacacccgcgacgtcgccgtggacctccccccctgcgcgaagctctcgacgatg 35
Query: 535 gagtggtcgacgagcacccggagcgaga 562
||||||||||||||||||||||| ||||
Sbjct: 34 gagtggtcgacgagcacccggagggaga 7
>gb|CB675354.1|CB675354 OSJNEe11A24.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe11A24 5', mRNA sequence
Length = 779
Score = 97.6 bits (49), Expect = 2e-017
Identities = 112/133 (84%)
Strand = Plus / Minus
Query: 1084 gtctcgccgacccatccccacagcacgcggcggcgcttggccgggtcgtagaacgtcttg 1143
|||||||||| ||| ||||| |||||||| || ||| | | ||||||||||||||||||
Sbjct: 779 gtctcgccgatccacccccatagcacgcgacgccgcccgacggggtcgtagaacgtcttg 720
Query: 1144 gacgcgtagaacttgccccagtcgtagcgcaggccgatgccgacgtccctgccggcgtcg 1203
||||||||||||||||| ||||||| || || ||||| |||||||| || |||||| |
Sbjct: 719 gacgcgtagaacttgccgtagtcgtaccggagcccgatcccgacgtcgatgtcggcgttg 660
Query: 1204 atcggcgtccagg 1216
|||||||||||
Sbjct: 659 tccggcgtccagg 647
Score = 81.8 bits (41), Expect = 1e-012
Identities = 80/93 (86%)
Strand = Plus / Minus
Query: 1762 gtccacacgccgttggtgtcgtaccactggtcgggcaccatggccagcgggaggcggcgc 1821
||||| ||||||||| |||||||||| ||||||||||||||||| ||||| ||| | ||
Sbjct: 125 gtccagacgccgttgatgtcgtaccagtggtcgggcaccatggcgagcggcaggtgcagc 66
Query: 1822 cagcggatcaggtcgcgggacacggcgtggccc 1854
||| |||| || ||||| |||||||| ||||||
Sbjct: 65 cagtggatgagatcgcgcgacacggcatggccc 33
Score = 50.1 bits (25), Expect = 0.004
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 1381 gggtagaagtcgatgcactcccacatgccggtgccgtcgacgcggtgcagcag 1433
||||| ||||| | ||||||||||||||||||||| | |||| |||||||||
Sbjct: 503 gggtacaagtccacgcactcccacatgccggtgcccttgacgacgtgcagcag 451
Score = 50.1 bits (25), Expect = 0.004
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 1567 gggtcgcggaagtccttgggcccgatgcccgggggcgggtacagcaccgggtt 1619
||||||||||||||| | ||||||||||||| ||||| ||||||||||||
Sbjct: 320 gggtcgcggaagtccgtcagcccgatgcccggcggcggcaccagcaccgggtt 268
>dbj|AK065130.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001P13, full
insert sequence
Length = 2255
Score = 97.6 bits (49), Expect = 2e-017
Identities = 112/133 (84%)
Strand = Plus / Minus
Query: 1084 gtctcgccgacccatccccacagcacgcggcggcgcttggccgggtcgtagaacgtcttg 1143
|||||||||| ||| ||||| |||||||| || ||| | | ||||||||||||||||||
Sbjct: 1363 gtctcgccgatccacccccatagcacgcgacgccgcccgacggggtcgtagaacgtcttg 1304
Query: 1144 gacgcgtagaacttgccccagtcgtagcgcaggccgatgccgacgtccctgccggcgtcg 1203
||||||||||||||||| ||||||| || || ||||| |||||||| || |||||| |
Sbjct: 1303 gacgcgtagaacttgccgtagtcgtaccggagcccgatcccgacgtcgatgtcggcgttg 1244
Query: 1204 atcggcgtccagg 1216
|||||||||||
Sbjct: 1243 tccggcgtccagg 1231
Score = 81.8 bits (41), Expect = 1e-012
Identities = 80/93 (86%)
Strand = Plus / Minus
Query: 1762 gtccacacgccgttggtgtcgtaccactggtcgggcaccatggccagcgggaggcggcgc 1821
||||| ||||||||| |||||||||| ||||||||||||||||| ||||| ||| | ||
Sbjct: 709 gtccagacgccgttgatgtcgtaccagtggtcgggcaccatggcgagcggcaggtgcagc 650
Query: 1822 cagcggatcaggtcgcgggacacggcgtggccc 1854
||| |||| || ||||| |||||||| ||||||
Sbjct: 649 cagtggatgagatcgcgcgacacggcatggccc 617
Score = 69.9 bits (35), Expect = 5e-009
Identities = 50/55 (90%)
Strand = Plus / Minus
Query: 962 tctccacctcctccacgggccactgaagcaggttgctgcccgtcttggtgtccag 1016
||||||||||| |||| |||||||| |||||||||||||| ||||| ||||||||
Sbjct: 1485 tctccacctccaccaccggccactggagcaggttgctgccagtcttcgtgtccag 1431
Score = 50.1 bits (25), Expect = 0.004
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 1381 gggtagaagtcgatgcactcccacatgccggtgccgtcgacgcggtgcagcag 1433
||||| ||||| | ||||||||||||||||||||| | |||| |||||||||
Sbjct: 1087 gggtacaagtccacgcactcccacatgccggtgcccttgacgacgtgcagcag 1035
Score = 50.1 bits (25), Expect = 0.004
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 1567 gggtcgcggaagtccttgggcccgatgcccgggggcgggtacagcaccgggtt 1619
||||||||||||||| | ||||||||||||| ||||| ||||||||||||
Sbjct: 904 gggtcgcggaagtccgtcagcccgatgcccggcggcggcaccagcaccgggtt 852
>dbj|AK099312.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023147H06, full
insert sequence
Length = 2243
Score = 97.6 bits (49), Expect = 2e-017
Identities = 112/133 (84%)
Strand = Plus / Minus
Query: 1084 gtctcgccgacccatccccacagcacgcggcggcgcttggccgggtcgtagaacgtcttg 1143
|||||||||| ||| ||||| |||||||| || ||| | | ||||||||||||||||||
Sbjct: 1364 gtctcgccgatccacccccatagcacgcgacgccgcccgacggggtcgtagaacgtcttg 1305
Query: 1144 gacgcgtagaacttgccccagtcgtagcgcaggccgatgccgacgtccctgccggcgtcg 1203
||||||||||||||||| ||||||| || || ||||| |||||||| || |||||| |
Sbjct: 1304 gacgcgtagaacttgccgtagtcgtaccggagcccgatcccgacgtcgatgtcggcgttg 1245
Query: 1204 atcggcgtccagg 1216
|||||||||||
Sbjct: 1244 tccggcgtccagg 1232
Score = 81.8 bits (41), Expect = 1e-012
Identities = 80/93 (86%)
Strand = Plus / Minus
Query: 1762 gtccacacgccgttggtgtcgtaccactggtcgggcaccatggccagcgggaggcggcgc 1821
||||| ||||||||| |||||||||| ||||||||||||||||| ||||| ||| | ||
Sbjct: 710 gtccagacgccgttgatgtcgtaccagtggtcgggcaccatggcgagcggcaggtgcagc 651
Query: 1822 cagcggatcaggtcgcgggacacggcgtggccc 1854
||| |||| || ||||| |||||||| ||||||
Sbjct: 650 cagtggatgagatcgcgcgacacggcatggccc 618
Score = 69.9 bits (35), Expect = 5e-009
Identities = 50/55 (90%)
Strand = Plus / Minus
Query: 962 tctccacctcctccacgggccactgaagcaggttgctgcccgtcttggtgtccag 1016
||||||||||| |||| |||||||| |||||||||||||| ||||| ||||||||
Sbjct: 1486 tctccacctccaccaccggccactggagcaggttgctgccagtcttcgtgtccag 1432
Score = 50.1 bits (25), Expect = 0.004
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 1381 gggtagaagtcgatgcactcccacatgccggtgccgtcgacgcggtgcagcag 1433
||||| ||||| | ||||||||||||||||||||| | |||| |||||||||
Sbjct: 1088 gggtacaagtccacgcactcccacatgccggtgcccttgacgacgtgcagcag 1036
Score = 50.1 bits (25), Expect = 0.004
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 1567 gggtcgcggaagtccttgggcccgatgcccgggggcgggtacagcaccgggtt 1619
||||||||||||||| | ||||||||||||| ||||| ||||||||||||
Sbjct: 905 gggtcgcggaagtccgtcagcccgatgcccggcggcggcaccagcaccgggtt 853
>gb|AACV01010189.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010189, whole
genome shotgun sequence
Length = 16013
Score = 97.6 bits (49), Expect = 2e-017
Identities = 112/133 (84%)
Strand = Plus / Plus
Query: 1084 gtctcgccgacccatccccacagcacgcggcggcgcttggccgggtcgtagaacgtcttg 1143
|||||||||| ||| ||||| |||||||| || ||| | | ||||||||||||||||||
Sbjct: 7384 gtctcgccgatccacccccatagcacgcgacgccgcccgacggggtcgtagaacgtcttg 7443
Query: 1144 gacgcgtagaacttgccccagtcgtagcgcaggccgatgccgacgtccctgccggcgtcg 1203
||||||||||||||||| ||||||| || || ||||| |||||||| || |||||| |
Sbjct: 7444 gacgcgtagaacttgccgtagtcgtaccggagcccgatcccgacgtcgatgtcggcgttg 7503
Query: 1204 atcggcgtccagg 1216
|||||||||||
Sbjct: 7504 tccggcgtccagg 7516
Score = 81.8 bits (41), Expect = 1e-012
Identities = 80/93 (86%)
Strand = Plus / Plus
Query: 1762 gtccacacgccgttggtgtcgtaccactggtcgggcaccatggccagcgggaggcggcgc 1821
||||| ||||||||| |||||||||| ||||||||||||||||| ||||| ||| | ||
Sbjct: 8038 gtccagacgccgttgatgtcgtaccagtggtcgggcaccatggcgagcggcaggtgcagc 8097
Query: 1822 cagcggatcaggtcgcgggacacggcgtggccc 1854
||| |||| || ||||| |||||||| ||||||
Sbjct: 8098 cagtggatgagatcgcgcgacacggcatggccc 8130
Score = 69.9 bits (35), Expect = 5e-009
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 962 tctccacctcctccacgggccactgaagcaggttgctgcccgtcttggtgtccag 1016
||||||||||| |||| |||||||| |||||||||||||| ||||| ||||||||
Sbjct: 3842 tctccacctccaccaccggccactggagcaggttgctgccagtcttcgtgtccag 3896
Score = 50.1 bits (25), Expect = 0.004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 1567 gggtcgcggaagtccttgggcccgatgcccgggggcgggtacagcaccgggtt 1619
||||||||||||||| | ||||||||||||| ||||| ||||||||||||
Sbjct: 7843 gggtcgcggaagtccgtcagcccgatgcccggcggcggcaccagcaccgggtt 7895
Score = 50.1 bits (25), Expect = 0.004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 1381 gggtagaagtcgatgcactcccacatgccggtgccgtcgacgcggtgcagcag 1433
||||| ||||| | ||||||||||||||||||||| | |||| |||||||||
Sbjct: 7660 gggtacaagtccacgcactcccacatgccggtgcccttgacgacgtgcagcag 7712
>ref|XM_473317.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 2001
Score = 97.6 bits (49), Expect = 2e-017
Identities = 112/133 (84%)
Strand = Plus / Minus
Query: 1084 gtctcgccgacccatccccacagcacgcggcggcgcttggccgggtcgtagaacgtcttg 1143
|||||||||| ||| ||||| |||||||| || ||| | | ||||||||||||||||||
Sbjct: 1217 gtctcgccgatccacccccatagcacgcgacgccgcccgacggggtcgtagaacgtcttg 1158
Query: 1144 gacgcgtagaacttgccccagtcgtagcgcaggccgatgccgacgtccctgccggcgtcg 1203
||||||||||||||||| ||||||| || || ||||| |||||||| || |||||| |
Sbjct: 1157 gacgcgtagaacttgccgtagtcgtaccggagcccgatcccgacgtcgatgtcggcgttg 1098
Query: 1204 atcggcgtccagg 1216
|||||||||||
Sbjct: 1097 tccggcgtccagg 1085
Score = 81.8 bits (41), Expect = 1e-012
Identities = 80/93 (86%)
Strand = Plus / Minus
Query: 1762 gtccacacgccgttggtgtcgtaccactggtcgggcaccatggccagcgggaggcggcgc 1821
||||| ||||||||| |||||||||| ||||||||||||||||| ||||| ||| | ||
Sbjct: 563 gtccagacgccgttgatgtcgtaccagtggtcgggcaccatggcgagcggcaggtgcagc 504
Query: 1822 cagcggatcaggtcgcgggacacggcgtggccc 1854
||| |||| || ||||| |||||||| ||||||
Sbjct: 503 cagtggatgagatcgcgcgacacggcatggccc 471
Score = 69.9 bits (35), Expect = 5e-009
Identities = 50/55 (90%)
Strand = Plus / Minus
Query: 962 tctccacctcctccacgggccactgaagcaggttgctgcccgtcttggtgtccag 1016
||||||||||| |||| |||||||| |||||||||||||| ||||| ||||||||
Sbjct: 1390 tctccacctccaccaccggccactggagcaggttgctgccagtcttcgtgtccag 1336
Score = 50.1 bits (25), Expect = 0.004
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 1381 gggtagaagtcgatgcactcccacatgccggtgccgtcgacgcggtgcagcag 1433
||||| ||||| | ||||||||||||||||||||| | |||| |||||||||
Sbjct: 941 gggtacaagtccacgcactcccacatgccggtgcccttgacgacgtgcagcag 889
Score = 50.1 bits (25), Expect = 0.004
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 1567 gggtcgcggaagtccttgggcccgatgcccgggggcgggtacagcaccgggtt 1619
||||||||||||||| | ||||||||||||| ||||| ||||||||||||
Sbjct: 758 gggtcgcggaagtccgtcagcccgatgcccggcggcggcaccagcaccgggtt 706
>ref|NT_079865.2| Oryza sativa (japonica cultivar-group)
Length = 3674553
Score = 97.6 bits (49), Expect = 2e-017
Identities = 112/133 (84%)
Strand = Plus / Minus
Query: 1084 gtctcgccgacccatccccacagcacgcggcggcgcttggccgggtcgtagaacgtcttg 1143
|||||||||| ||| ||||| |||||||| || ||| | | ||||||||||||||||||
Sbjct: 517087 gtctcgccgatccacccccatagcacgcgacgccgcccgacggggtcgtagaacgtcttg 517028
Query: 1144 gacgcgtagaacttgccccagtcgtagcgcaggccgatgccgacgtccctgccggcgtcg 1203
||||||||||||||||| ||||||| || || ||||| |||||||| || |||||| |
Sbjct: 517027 gacgcgtagaacttgccgtagtcgtaccggagcccgatcccgacgtcgatgtcggcgttg 516968
Query: 1204 atcggcgtccagg 1216
|||||||||||
Sbjct: 516967 tccggcgtccagg 516955
Score = 81.8 bits (41), Expect = 1e-012
Identities = 80/93 (86%)
Strand = Plus / Minus
Query: 1762 gtccacacgccgttggtgtcgtaccactggtcgggcaccatggccagcgggaggcggcgc 1821
||||| ||||||||| |||||||||| ||||||||||||||||| ||||| ||| | ||
Sbjct: 516433 gtccagacgccgttgatgtcgtaccagtggtcgggcaccatggcgagcggcaggtgcagc 516374
Query: 1822 cagcggatcaggtcgcgggacacggcgtggccc 1854
||| |||| || ||||| |||||||| ||||||
Sbjct: 516373 cagtggatgagatcgcgcgacacggcatggccc 516341
Score = 69.9 bits (35), Expect = 5e-009
Identities = 50/55 (90%)
Strand = Plus / Minus
Query: 962 tctccacctcctccacgggccactgaagcaggttgctgcccgtcttggtgtccag 1016
||||||||||| |||| |||||||| |||||||||||||| ||||| ||||||||
Sbjct: 520629 tctccacctccaccaccggccactggagcaggttgctgccagtcttcgtgtccag 520575
Score = 50.1 bits (25), Expect = 0.004
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 1381 gggtagaagtcgatgcactcccacatgccggtgccgtcgacgcggtgcagcag 1433
||||| ||||| | ||||||||||||||||||||| | |||| |||||||||
Sbjct: 516811 gggtacaagtccacgcactcccacatgccggtgcccttgacgacgtgcagcag 516759
Score = 50.1 bits (25), Expect = 0.004
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 1567 gggtcgcggaagtccttgggcccgatgcccgggggcgggtacagcaccgggtt 1619
||||||||||||||| | ||||||||||||| ||||| ||||||||||||
Sbjct: 516628 gggtcgcggaagtccgtcagcccgatgcccggcggcggcaccagcaccgggtt 516576
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 97.6 bits (49), Expect = 2e-017
Identities = 112/133 (84%)
Strand = Plus / Minus
Query: 1084 gtctcgccgacccatccccacagcacgcggcggcgcttggccgggtcgtagaacgtcttg 1143
|||||||||| ||| ||||| |||||||| || ||| | | ||||||||||||||||||
Sbjct: 4573292 gtctcgccgatccacccccatagcacgcgacgccgcccgacggggtcgtagaacgtcttg 4573233
Query: 1144 gacgcgtagaacttgccccagtcgtagcgcaggccgatgccgacgtccctgccggcgtcg 1203
||||||||||||||||| ||||||| || || ||||| |||||||| || |||||| |
Sbjct: 4573232 gacgcgtagaacttgccgtagtcgtaccggagcccgatcccgacgtcgatgtcggcgttg 4573173
Query: 1204 atcggcgtccagg 1216
|||||||||||
Sbjct: 4573172 tccggcgtccagg 4573160
Score = 81.8 bits (41), Expect = 1e-012
Identities = 80/93 (86%)
Strand = Plus / Minus
Query: 1762 gtccacacgccgttggtgtcgtaccactggtcgggcaccatggccagcgggaggcggcgc 1821
||||| ||||||||| |||||||||| ||||||||||||||||| ||||| ||| | ||
Sbjct: 4572638 gtccagacgccgttgatgtcgtaccagtggtcgggcaccatggcgagcggcaggtgcagc 4572579
Query: 1822 cagcggatcaggtcgcgggacacggcgtggccc 1854
||| |||| || ||||| |||||||| ||||||
Sbjct: 4572578 cagtggatgagatcgcgcgacacggcatggccc 4572546
Score = 69.9 bits (35), Expect = 5e-009
Identities = 50/55 (90%)
Strand = Plus / Minus
Query: 962 tctccacctcctccacgggccactgaagcaggttgctgcccgtcttggtgtccag 1016
||||||||||| |||| |||||||| |||||||||||||| ||||| ||||||||
Sbjct: 4576834 tctccacctccaccaccggccactggagcaggttgctgccagtcttcgtgtccag 4576780
Score = 50.1 bits (25), Expect = 0.004
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 1381 gggtagaagtcgatgcactcccacatgccggtgccgtcgacgcggtgcagcag 1433
||||| ||||| | ||||||||||||||||||||| | |||| |||||||||
Sbjct: 4573016 gggtacaagtccacgcactcccacatgccggtgcccttgacgacgtgcagcag 4572964
Score = 50.1 bits (25), Expect = 0.004
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 1567 gggtcgcggaagtccttgggcccgatgcccgggggcgggtacagcaccgggtt 1619
||||||||||||||| | ||||||||||||| ||||| ||||||||||||
Sbjct: 4572833 gggtcgcggaagtccgtcagcccgatgcccggcggcggcaccagcaccgggtt 4572781
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 97.6 bits (49), Expect = 2e-017
Identities = 112/133 (84%)
Strand = Plus / Minus
Query: 1084 gtctcgccgacccatccccacagcacgcggcggcgcttggccgggtcgtagaacgtcttg 1143
|||||||||| ||| ||||| |||||||| || ||| | | ||||||||||||||||||
Sbjct: 23717391 gtctcgccgatccacccccatagcacgcgacgccgcccgacggggtcgtagaacgtcttg 23717332
Query: 1144 gacgcgtagaacttgccccagtcgtagcgcaggccgatgccgacgtccctgccggcgtcg 1203
||||||||||||||||| ||||||| || || ||||| |||||||| || |||||| |
Sbjct: 23717331 gacgcgtagaacttgccgtagtcgtaccggagcccgatcccgacgtcgatgtcggcgttg 23717272
Query: 1204 atcggcgtccagg 1216
|||||||||||
Sbjct: 23717271 tccggcgtccagg 23717259
Score = 93.7 bits (47), Expect = 3e-016
Identities = 71/79 (89%)
Strand = Plus / Minus
Query: 1094 cccatccccacagcacgcggcggcgcttggccgggtcgtagaacgtcttggacgcgtaga 1153
|||||||||| || | |||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 17563338 cccatccccagaggatgcggcggcgcttcgccgggtcgtagaacgtcttggaggcgtaga 17563279
Query: 1154 acttgccccagtcgtagcg 1172
| ||||| ||||||||||
Sbjct: 17563278 agttgccgtagtcgtagcg 17563260
Score = 83.8 bits (42), Expect = 3e-013
Identities = 63/70 (90%)
Strand = Plus / Minus
Query: 1110 gcggcggcgcttggccgggtcgtagaacgtcttggacgcgtagaacttgccccagtcgta 1169
||||||||||||||||||||||||||||| |||||| |||||||| | ||| |||||||
Sbjct: 17550917 gcggcggcgcttggccgggtcgtagaacgacttggatgcgtagaagtcgccgtagtcgta 17550858
Query: 1170 gcgcaggccg 1179
||| ||||||
Sbjct: 17550857 gcggaggccg 17550848
Score = 81.8 bits (41), Expect = 1e-012
Identities = 80/93 (86%)
Strand = Plus / Minus
Query: 1762 gtccacacgccgttggtgtcgtaccactggtcgggcaccatggccagcgggaggcggcgc 1821
||||| ||||||||| |||||||||| ||||||||||||||||| ||||| ||| | ||
Sbjct: 23716737 gtccagacgccgttgatgtcgtaccagtggtcgggcaccatggcgagcggcaggtgcagc 23716678
Query: 1822 cagcggatcaggtcgcgggacacggcgtggccc 1854
||| |||| || ||||| |||||||| ||||||
Sbjct: 23716677 cagtggatgagatcgcgcgacacggcatggccc 23716645
Score = 69.9 bits (35), Expect = 5e-009
Identities = 50/55 (90%)
Strand = Plus / Minus
Query: 962 tctccacctcctccacgggccactgaagcaggttgctgcccgtcttggtgtccag 1016
||||||||||| |||| |||||||| |||||||||||||| ||||| ||||||||
Sbjct: 23720933 tctccacctccaccaccggccactggagcaggttgctgccagtcttcgtgtccag 23720879
Score = 50.1 bits (25), Expect = 0.004
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 1381 gggtagaagtcgatgcactcccacatgccggtgccgtcgacgcggtgcagcag 1433
||||| ||||| | ||||||||||||||||||||| | |||| |||||||||
Sbjct: 23717115 gggtacaagtccacgcactcccacatgccggtgcccttgacgacgtgcagcag 23717063
Score = 50.1 bits (25), Expect = 0.004
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 1567 gggtcgcggaagtccttgggcccgatgcccgggggcgggtacagcaccgggtt 1619
||||||||||||||| | ||||||||||||| ||||| ||||||||||||
Sbjct: 23716932 gggtcgcggaagtccgtcagcccgatgcccggcggcggcaccagcaccgggtt 23716880
>emb|AL662998.4|OSJN00196 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0020O11,
complete sequence
Length = 113677
Score = 97.6 bits (49), Expect = 2e-017
Identities = 112/133 (84%)
Strand = Plus / Plus
Query: 1084 gtctcgccgacccatccccacagcacgcggcggcgcttggccgggtcgtagaacgtcttg 1143
|||||||||| ||| ||||| |||||||| || ||| | | ||||||||||||||||||
Sbjct: 42696 gtctcgccgatccacccccatagcacgcgacgccgcccgacggggtcgtagaacgtcttg 42755
Query: 1144 gacgcgtagaacttgccccagtcgtagcgcaggccgatgccgacgtccctgccggcgtcg 1203
||||||||||||||||| ||||||| || || ||||| |||||||| || |||||| |
Sbjct: 42756 gacgcgtagaacttgccgtagtcgtaccggagcccgatcccgacgtcgatgtcggcgttg 42815
Query: 1204 atcggcgtccagg 1216
|||||||||||
Sbjct: 42816 tccggcgtccagg 42828
Score = 81.8 bits (41), Expect = 1e-012
Identities = 80/93 (86%)
Strand = Plus / Plus
Query: 1762 gtccacacgccgttggtgtcgtaccactggtcgggcaccatggccagcgggaggcggcgc 1821
||||| ||||||||| |||||||||| ||||||||||||||||| ||||| ||| | ||
Sbjct: 43350 gtccagacgccgttgatgtcgtaccagtggtcgggcaccatggcgagcggcaggtgcagc 43409
Query: 1822 cagcggatcaggtcgcgggacacggcgtggccc 1854
||| |||| || ||||| |||||||| ||||||
Sbjct: 43410 cagtggatgagatcgcgcgacacggcatggccc 43442
Score = 69.9 bits (35), Expect = 5e-009
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 962 tctccacctcctccacgggccactgaagcaggttgctgcccgtcttggtgtccag 1016
||||||||||| |||| |||||||| |||||||||||||| ||||| ||||||||
Sbjct: 39154 tctccacctccaccaccggccactggagcaggttgctgccagtcttcgtgtccag 39208
Score = 50.1 bits (25), Expect = 0.004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 1567 gggtcgcggaagtccttgggcccgatgcccgggggcgggtacagcaccgggtt 1619
||||||||||||||| | ||||||||||||| ||||| ||||||||||||
Sbjct: 43155 gggtcgcggaagtccgtcagcccgatgcccggcggcggcaccagcaccgggtt 43207
Score = 50.1 bits (25), Expect = 0.004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 1381 gggtagaagtcgatgcactcccacatgccggtgccgtcgacgcggtgcagcag 1433
||||| ||||| | ||||||||||||||||||||| | |||| |||||||||
Sbjct: 42972 gggtacaagtccacgcactcccacatgccggtgcccttgacgacgtgcagcag 43024
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 97.6 bits (49), Expect = 2e-017
Identities = 112/133 (84%)
Strand = Plus / Minus
Query: 1084 gtctcgccgacccatccccacagcacgcggcggcgcttggccgggtcgtagaacgtcttg 1143
|||||||||| ||| ||||| |||||||| || ||| | | ||||||||||||||||||
Sbjct: 26740499 gtctcgccgatccacccccatagcacgcgacgccgcccgacggggtcgtagaacgtcttg 26740440
Query: 1144 gacgcgtagaacttgccccagtcgtagcgcaggccgatgccgacgtccctgccggcgtcg 1203
||||||||||||||||| ||||||| || || ||||| |||||||| || |||||| |
Sbjct: 26740439 gacgcgtagaacttgccgtagtcgtaccggagcccgatcccgacgtcgatgtcggcgttg 26740380
Query: 1204 atcggcgtccagg 1216
|||||||||||
Sbjct: 26740379 tccggcgtccagg 26740367
Score = 93.7 bits (47), Expect = 3e-016
Identities = 71/79 (89%)
Strand = Plus / Minus
Query: 1094 cccatccccacagcacgcggcggcgcttggccgggtcgtagaacgtcttggacgcgtaga 1153
|||||||||| || | |||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 20433383 cccatccccagaggatgcggcggcgcttcgccgggtcgtagaacgtcttggaggcgtaga 20433324
Query: 1154 acttgccccagtcgtagcg 1172
| ||||| ||||||||||
Sbjct: 20433323 agttgccgtagtcgtagcg 20433305
Score = 83.8 bits (42), Expect = 3e-013
Identities = 63/70 (90%)
Strand = Plus / Minus
Query: 1110 gcggcggcgcttggccgggtcgtagaacgtcttggacgcgtagaacttgccccagtcgta 1169
||||||||||||||||||||||||||||| |||||| |||||||| | ||| |||||||
Sbjct: 20422592 gcggcggcgcttggccgggtcgtagaacgacttggatgcgtagaagtcgccgtagtcgta 20422533
Query: 1170 gcgcaggccg 1179
||| ||||||
Sbjct: 20422532 gcggaggccg 20422523
Score = 81.8 bits (41), Expect = 1e-012
Identities = 80/93 (86%)
Strand = Plus / Minus
Query: 1762 gtccacacgccgttggtgtcgtaccactggtcgggcaccatggccagcgggaggcggcgc 1821
||||| ||||||||| |||||||||| ||||||||||||||||| ||||| ||| | ||
Sbjct: 26739845 gtccagacgccgttgatgtcgtaccagtggtcgggcaccatggcgagcggcaggtgcagc 26739786
Query: 1822 cagcggatcaggtcgcgggacacggcgtggccc 1854
||| |||| || ||||| |||||||| ||||||
Sbjct: 26739785 cagtggatgagatcgcgcgacacggcatggccc 26739753
Score = 69.9 bits (35), Expect = 5e-009
Identities = 50/55 (90%)
Strand = Plus / Minus
Query: 962 tctccacctcctccacgggccactgaagcaggttgctgcccgtcttggtgtccag 1016
||||||||||| |||| |||||||| |||||||||||||| ||||| ||||||||
Sbjct: 26744041 tctccacctccaccaccggccactggagcaggttgctgccagtcttcgtgtccag 26743987
Score = 56.0 bits (28), Expect = 7e-005
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 1100 cccacagcacgcggcggcgcttggccgggtcgtagaacgtcttggacgcgta 1151
||||||||||||| || |||| ||| ||||||||||||||||||||||||
Sbjct: 33975917 cccacagcacgcgccgtttcttgcccgcgtcgtagaacgtcttggacgcgta 33975968
Score = 50.1 bits (25), Expect = 0.004
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 1381 gggtagaagtcgatgcactcccacatgccggtgccgtcgacgcggtgcagcag 1433
||||| ||||| | ||||||||||||||||||||| | |||| |||||||||
Sbjct: 26740223 gggtacaagtccacgcactcccacatgccggtgcccttgacgacgtgcagcag 26740171
Score = 50.1 bits (25), Expect = 0.004
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 1567 gggtcgcggaagtccttgggcccgatgcccgggggcgggtacagcaccgggtt 1619
||||||||||||||| | ||||||||||||| ||||| ||||||||||||
Sbjct: 26740040 gggtcgcggaagtccgtcagcccgatgcccggcggcggcaccagcaccgggtt 26739988
>gb|CV721157.1|CV721157 YBH--03-B14.b1 Rice before heading yeast two hybrid lambda phage cDNA
library (YBH) Oryza sativa (japonica cultivar-group) cDNA
clone YBH--03-B14, mRNA sequence
Length = 290
Score = 93.7 bits (47), Expect = 3e-016
Identities = 92/107 (85%)
Strand = Plus / Plus
Query: 1084 gtctcgccgacccatccccacagcacgcggcggcgcttggccgggtcgtagaacgtcttg 1143
|||||||||| ||| ||||| |||||||| || ||| | | ||||||||||||||||||
Sbjct: 175 gtctcgccgatccacccccatagcacgcgacgccgcccgacggggtcgtagaacgtcttg 234
Query: 1144 gacgcgtagaacttgccccagtcgtagcgcaggccgatgccgacgtc 1190
||||||||||||||||| ||||||| || || ||||| ||||||||
Sbjct: 235 gacgcgtagaacttgccgtagtcgtaccggagcccgatcccgacgtc 281
Score = 69.9 bits (35), Expect = 5e-009
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 962 tctccacctcctccacgggccactgaagcaggttgctgcccgtcttggtgtccag 1016
||||||||||| |||| |||||||| |||||||||||||| ||||| ||||||||
Sbjct: 53 tctccacctccaccaccggccactggagcaggttgctgccagtcttcgtgtccag 107
>dbj|AK072276.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023010O04, full
insert sequence
Length = 2089
Score = 93.7 bits (47), Expect = 3e-016
Identities = 71/79 (89%)
Strand = Plus / Minus
Query: 1094 cccatccccacagcacgcggcggcgcttggccgggtcgtagaacgtcttggacgcgtaga 1153
|||||||||| || | |||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 1091 cccatccccagaggatgcggcggcgcttcgccgggtcgtagaacgtcttggaggcgtaga 1032
Query: 1154 acttgccccagtcgtagcg 1172
| ||||| ||||||||||
Sbjct: 1031 agttgccgtagtcgtagcg 1013
>gb|AACV01009704.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg009704, whole
genome shotgun sequence
Length = 16702
Score = 93.7 bits (47), Expect = 3e-016
Identities = 71/79 (89%)
Strand = Plus / Plus
Query: 1094 cccatccccacagcacgcggcggcgcttggccgggtcgtagaacgtcttggacgcgtaga 1153
|||||||||| || | |||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 14168 cccatccccagaggatgcggcggcgcttcgccgggtcgtagaacgtcttggaggcgtaga 14227
Query: 1154 acttgccccagtcgtagcg 1172
| ||||| ||||||||||
Sbjct: 14228 agttgccgtagtcgtagcg 14246
>ref|XM_472409.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1788
Score = 93.7 bits (47), Expect = 3e-016
Identities = 71/79 (89%)
Strand = Plus / Minus
Query: 1094 cccatccccacagcacgcggcggcgcttggccgggtcgtagaacgtcttggacgcgtaga 1153
|||||||||| || | |||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 1030 cccatccccagaggatgcggcggcgcttcgccgggtcgtagaacgtcttggaggcgtaga 971
Query: 1154 acttgccccagtcgtagcg 1172
| ||||| ||||||||||
Sbjct: 970 agttgccgtagtcgtagcg 952
>ref|NT_107198.1| Oryza sativa (japonica cultivar-group)
Length = 632744
Score = 93.7 bits (47), Expect = 3e-016
Identities = 71/79 (89%)
Strand = Plus / Minus
Query: 1094 cccatccccacagcacgcggcggcgcttggccgggtcgtagaacgtcttggacgcgtaga 1153
|||||||||| || | |||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 164016 cccatccccagaggatgcggcggcgcttcgccgggtcgtagaacgtcttggaggcgtaga 163957
Query: 1154 acttgccccagtcgtagcg 1172
| ||||| ||||||||||
Sbjct: 163956 agttgccgtagtcgtagcg 163938
Score = 83.8 bits (42), Expect = 3e-013
Identities = 63/70 (90%)
Strand = Plus / Minus
Query: 1110 gcggcggcgcttggccgggtcgtagaacgtcttggacgcgtagaacttgccccagtcgta 1169
||||||||||||||||||||||||||||| |||||| |||||||| | ||| |||||||
Sbjct: 153225 gcggcggcgcttggccgggtcgtagaacgacttggatgcgtagaagtcgccgtagtcgta 153166
Query: 1170 gcgcaggccg 1179
||| ||||||
Sbjct: 153165 gcggaggccg 153156
>gb|CH401189.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000026 genomic
scaffold, whole genome shotgun sequence
Length = 11796637
Score = 93.7 bits (47), Expect = 3e-016
Identities = 71/79 (89%)
Strand = Plus / Minus
Query: 1094 cccatccccacagcacgcggcggcgcttggccgggtcgtagaacgtcttggacgcgtaga 1153
|||||||||| || | |||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 10215976 cccatccccagaggatgcggcggcgcttcgccgggtcgtagaacgtcttggaggcgtaga 10215917
Query: 1154 acttgccccagtcgtagcg 1172
| ||||| ||||||||||
Sbjct: 10215916 agttgccgtagtcgtagcg 10215898
Score = 83.8 bits (42), Expect = 3e-013
Identities = 63/70 (90%)
Strand = Plus / Minus
Query: 1110 gcggcggcgcttggccgggtcgtagaacgtcttggacgcgtagaacttgccccagtcgta 1169
||||||||||||||||||||||||||||| |||||| |||||||| | ||| |||||||
Sbjct: 10203555 gcggcggcgcttggccgggtcgtagaacgacttggatgcgtagaagtcgccgtagtcgta 10203496
Query: 1170 gcgcaggccg 1179
||| ||||||
Sbjct: 10203495 gcggaggccg 10203486
>gb|AY578159.1| Oryza sativa (japonica cultivar-group) cell-wall invertase 2 mRNA,
complete cds
Length = 1995
Score = 93.7 bits (47), Expect = 3e-016
Identities = 71/79 (89%)
Strand = Plus / Minus
Query: 1094 cccatccccacagcacgcggcggcgcttggccgggtcgtagaacgtcttggacgcgtaga 1153
|||||||||| || | |||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 1084 cccatccccagaggatgcggcggcgcttcgccgggtcgtagaacgtcttggaggcgtaga 1025
Query: 1154 acttgccccagtcgtagcg 1172
| ||||| ||||||||||
Sbjct: 1024 agttgccgtagtcgtagcg 1006
>emb|AL662945.3|OSJN00141 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ000126_13,
complete sequence
Length = 113960
Score = 93.7 bits (47), Expect = 3e-016
Identities = 71/79 (89%)
Strand = Plus / Minus
Query: 1094 cccatccccacagcacgcggcggcgcttggccgggtcgtagaacgtcttggacgcgtaga 1153
|||||||||| || | |||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 46803 cccatccccagaggatgcggcggcgcttcgccgggtcgtagaacgtcttggaggcgtaga 46744
Query: 1154 acttgccccagtcgtagcg 1172
| ||||| ||||||||||
Sbjct: 46743 agttgccgtagtcgtagcg 46725
Score = 83.8 bits (42), Expect = 3e-013
Identities = 63/70 (90%)
Strand = Plus / Minus
Query: 1110 gcggcggcgcttggccgggtcgtagaacgtcttggacgcgtagaacttgccccagtcgta 1169
||||||||||||||||||||||||||||| |||||| |||||||| | ||| |||||||
Sbjct: 36012 gcggcggcgcttggccgggtcgtagaacgacttggatgcgtagaagtcgccgtagtcgta 35953
Query: 1170 gcgcaggccg 1179
||| ||||||
Sbjct: 35952 gcggaggccg 35943
>dbj|AK099126.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023042C22, full
insert sequence
Length = 1376
Score = 89.7 bits (45), Expect = 5e-015
Identities = 111/133 (83%)
Strand = Plus / Minus
Query: 1084 gtctcgccgacccatccccacagcacgcggcggcgcttggccgggtcgtagaacgtcttg 1143
|||||||| | ||| ||||| |||||||| || ||| | | ||||||||||||||||||
Sbjct: 1300 gtctcgccaatccacccccatagcacgcgacgccgcccgacggggtcgtagaacgtcttg 1241
Query: 1144 gacgcgtagaacttgccccagtcgtagcgcaggccgatgccgacgtccctgccggcgtcg 1203
||||||||||||||||| ||||||| || || ||||| |||||||| || |||||| |
Sbjct: 1240 gacgcgtagaacttgccgtagtcgtaccggagcccgatcccgacgtcgatgtcggcgttg 1181
Query: 1204 atcggcgtccagg 1216
|||||||||||
Sbjct: 1180 tccggcgtccagg 1168
Score = 81.8 bits (41), Expect = 1e-012
Identities = 80/93 (86%)
Strand = Plus / Minus
Query: 1762 gtccacacgccgttggtgtcgtaccactggtcgggcaccatggccagcgggaggcggcgc 1821
||||| ||||||||| |||||||||| ||||||||||||||||| ||||| ||| | ||
Sbjct: 646 gtccagacgccgttgatgtcgtaccagtggtcgggcaccatggcgagcggcaggtgcagc 587
Query: 1822 cagcggatcaggtcgcgggacacggcgtggccc 1854
||| |||| || ||||| |||||||| ||||||
Sbjct: 586 cagtggatgagatcgcgcgacacggcatggccc 554
Score = 50.1 bits (25), Expect = 0.004
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 1381 gggtagaagtcgatgcactcccacatgccggtgccgtcgacgcggtgcagcag 1433
||||| ||||| | ||||||||||||||||||||| | |||| |||||||||
Sbjct: 1024 gggtacaagtccacgcactcccacatgccggtgcccttgacgacgtgcagcag 972
Score = 50.1 bits (25), Expect = 0.004
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 1567 gggtcgcggaagtccttgggcccgatgcccgggggcgggtacagcaccgggtt 1619
||||||||||||||| | ||||||||||||| ||||| ||||||||||||
Sbjct: 841 gggtcgcggaagtccgtcagcccgatgcccggcggcggcaccagcaccgggtt 789
>dbj|AK120779.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023009M11, full
insert sequence
Length = 2289
Score = 83.8 bits (42), Expect = 3e-013
Identities = 63/70 (90%)
Strand = Plus / Minus
Query: 1110 gcggcggcgcttggccgggtcgtagaacgtcttggacgcgtagaacttgccccagtcgta 1169
||||||||||||||||||||||||||||| |||||| |||||||| | ||| |||||||
Sbjct: 1063 gcggcggcgcttggccgggtcgtagaacgacttggatgcgtagaagtcgccgtagtcgta 1004
Query: 1170 gcgcaggccg 1179
||| ||||||
Sbjct: 1003 gcggaggccg 994
>gb|AACV01009702.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg009702, whole
genome shotgun sequence
Length = 11577
Score = 83.8 bits (42), Expect = 3e-013
Identities = 63/70 (90%)
Strand = Plus / Plus
Query: 1110 gcggcggcgcttggccgggtcgtagaacgtcttggacgcgtagaacttgccccagtcgta 1169
||||||||||||||||||||||||||||| |||||| |||||||| | ||| |||||||
Sbjct: 8068 gcggcggcgcttggccgggtcgtagaacgacttggatgcgtagaagtcgccgtagtcgta 8127
Query: 1170 gcgcaggccg 1179
||| ||||||
Sbjct: 8128 gcggaggccg 8137
>ref|XM_472408.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1752
Score = 83.8 bits (42), Expect = 3e-013
Identities = 63/70 (90%)
Strand = Plus / Minus
Query: 1110 gcggcggcgcttggccgggtcgtagaacgtcttggacgcgtagaacttgccccagtcgta 1169
||||||||||||||||||||||||||||| |||||| |||||||| | ||| |||||||
Sbjct: 993 gcggcggcgcttggccgggtcgtagaacgacttggatgcgtagaagtcgccgtagtcgta 934
Query: 1170 gcgcaggccg 1179
||| ||||||
Sbjct: 933 gcggaggccg 924
>gb|AY578160.1| Oryza sativa (japonica cultivar-group) cell-wall invertase 3 mRNA,
complete cds
Length = 1911
Score = 83.8 bits (42), Expect = 3e-013
Identities = 63/70 (90%)
Strand = Plus / Minus
Query: 1110 gcggcggcgcttggccgggtcgtagaacgtcttggacgcgtagaacttgccccagtcgta 1169
||||||||||||||||||||||||||||| |||||| |||||||| | ||| |||||||
Sbjct: 1029 gcggcggcgcttggccgggtcgtagaacgacttggatgcgtagaagtcgccgtagtcgta 970
Query: 1170 gcgcaggccg 1179
||| ||||||
Sbjct: 969 gcggaggccg 960
>gb|AU184122.1|AU184122 AU184122 Rice root Oryza sativa (japonica cultivar-group) cDNA clone
R1214, mRNA sequence
Length = 466
Score = 81.8 bits (41), Expect = 1e-012
Identities = 80/93 (86%)
Strand = Plus / Minus
Query: 1762 gtccacacgccgttggtgtcgtaccactggtcgggcaccatggccagcgggaggcggcgc 1821
||||| ||||||||| |||||||||| ||||||||||||||||| ||||| ||| | ||
Sbjct: 189 gtccagacgccgttgatgtcgtaccagtggtcgggcaccatggcgagcggcaggtgcagc 130
Query: 1822 cagcggatcaggtcgcgggacacggcgtggccc 1854
||| |||| || ||||| |||||||| ||||||
Sbjct: 129 cagtggatgagatcgcgcgacacggcatggccc 97
Score = 50.1 bits (25), Expect = 0.004
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 1567 gggtcgcggaagtccttgggcccgatgcccgggggcgggtacagcaccgggtt 1619
||||||||||||||| | ||||||||||||| ||||| ||||||||||||
Sbjct: 384 gggtcgcggaagtccgtcagcccgatgcccggcggcggcaccagcaccgggtt 332
>gb|CB672111.1|CB672111 OSJNEe05P17.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe05P17 5', mRNA sequence
Length = 750
Score = 81.8 bits (41), Expect = 1e-012
Identities = 80/93 (86%)
Strand = Plus / Minus
Query: 1762 gtccacacgccgttggtgtcgtaccactggtcgggcaccatggccagcgggaggcggcgc 1821
||||| ||||||||| |||||||||| ||||||||||||||||| ||||| ||| | ||
Sbjct: 519 gtccagacgccgttgatgtcgtaccagtggtcgggcaccatggcgagcggcaggtgcagc 460
Query: 1822 cagcggatcaggtcgcgggacacggcgtggccc 1854
||| |||| || ||||| |||||||| ||||||
Sbjct: 459 cagtggatgagatcgcgcgacacggcatggccc 427
Score = 50.1 bits (25), Expect = 0.004
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 1567 gggtcgcggaagtccttgggcccgatgcccgggggcgggtacagcaccgggtt 1619
||||||||||||||| | ||||||||||||| ||||| ||||||||||||
Sbjct: 714 gggtcgcggaagtccgtcagcccgatgcccggcggcggcaccagcaccgggtt 662
>gb|AC118133.4| Oryza sativa chromosome 3 BAC OSJNBb0016H12 genomic sequence, complete
sequence
Length = 139946
Score = 77.8 bits (39), Expect = 2e-011
Identities = 69/79 (87%)
Strand = Plus / Minus
Query: 1094 cccatccccacagcacgcggcggcgcttggccgggtcgtagaacgtcttggacgcgtaga 1153
|||| |||||||||||||||||| || | |||| |||| ||||||||||||||||||||
Sbjct: 23632 cccagccccacagcacgcggcggtgcctcgccgtgtcgaggaacgtcttggacgcgtaga 23573
Query: 1154 acttgccccagtcgtagcg 1172
| ||||| ||||||||||
Sbjct: 23572 agttgccatagtcgtagcg 23554
>gb|AY387483.1| Oryza sativa (japonica cultivar-group) BAC OSJNBa0084L17, complete
sequence
Length = 159661
Score = 77.8 bits (39), Expect = 2e-011
Identities = 69/79 (87%)
Strand = Plus / Plus
Query: 1094 cccatccccacagcacgcggcggcgcttggccgggtcgtagaacgtcttggacgcgtaga 1153
|||| |||||||||||||||||| || | |||| |||| ||||||||||||||||||||
Sbjct: 152914 cccagccccacagcacgcggcggtgcctcgccgtgtcgaggaacgtcttggacgcgtaga 152973
Query: 1154 acttgccccagtcgtagcg 1172
| ||||| ||||||||||
Sbjct: 152974 agttgccatagtcgtagcg 152992
>gb|AACV01007875.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg007875, whole
genome shotgun sequence
Length = 9387
Score = 77.8 bits (39), Expect = 2e-011
Identities = 69/79 (87%)
Strand = Plus / Minus
Query: 1094 cccatccccacagcacgcggcggcgcttggccgggtcgtagaacgtcttggacgcgtaga 1153
|||| |||||||||||||||||| || | |||| |||| ||||||||||||||||||||
Sbjct: 5622 cccagccccacagcacgcggcggtgcctcgccgtgtcgaggaacgtcttggacgcgtaga 5563
Query: 1154 acttgccccagtcgtagcg 1172
| ||||| ||||||||||
Sbjct: 5562 agttgccatagtcgtagcg 5544
>ref|XM_469625.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1098
Score = 77.8 bits (39), Expect = 2e-011
Identities = 69/79 (87%)
Strand = Plus / Minus
Query: 1094 cccatccccacagcacgcggcggcgcttggccgggtcgtagaacgtcttggacgcgtaga 1153
|||| |||||||||||||||||| || | |||| |||| ||||||||||||||||||||
Sbjct: 313 cccagccccacagcacgcggcggtgcctcgccgtgtcgaggaacgtcttggacgcgtaga 254
Query: 1154 acttgccccagtcgtagcg 1172
| ||||| ||||||||||
Sbjct: 253 agttgccatagtcgtagcg 235
>ref|NT_079916.2| Oryza sativa (japonica cultivar-group)
Length = 3914802
Score = 77.8 bits (39), Expect = 2e-011
Identities = 69/79 (87%)
Strand = Plus / Minus
Query: 1094 cccatccccacagcacgcggcggcgcttggccgggtcgtagaacgtcttggacgcgtaga 1153
|||| |||||||||||||||||| || | |||| |||| ||||||||||||||||||||
Sbjct: 3164194 cccagccccacagcacgcggcggtgcctcgccgtgtcgaggaacgtcttggacgcgtaga 3164135
Query: 1154 acttgccccagtcgtagcg 1172
| ||||| ||||||||||
Sbjct: 3164134 agttgccatagtcgtagcg 3164116
>gb|CH401176.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000013 genomic
scaffold, whole genome shotgun sequence
Length = 9810738
Score = 77.8 bits (39), Expect = 2e-011
Identities = 69/79 (87%)
Strand = Plus / Minus
Query: 1094 cccatccccacagcacgcggcggcgcttggccgggtcgtagaacgtcttggacgcgtaga 1153
|||| |||||||||||||||||| || | |||| |||| ||||||||||||||||||||
Sbjct: 3550794 cccagccccacagcacgcggcggtgcctcgccgtgtcgaggaacgtcttggacgcgtaga 3550735
Query: 1154 acttgccccagtcgtagcg 1172
| ||||| ||||||||||
Sbjct: 3550734 agttgccatagtcgtagcg 3550716
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 77.8 bits (39), Expect = 2e-011
Identities = 69/79 (87%)
Strand = Plus / Minus
Query: 1094 cccatccccacagcacgcggcggcgcttggccgggtcgtagaacgtcttggacgcgtaga 1153
|||| |||||||||||||||||| || | |||| |||| ||||||||||||||||||||
Sbjct: 30816957 cccagccccacagcacgcggcggtgcctcgccgtgtcgaggaacgtcttggacgcgtaga 30816898
Query: 1154 acttgccccagtcgtagcg 1172
| ||||| ||||||||||
Sbjct: 30816897 agttgccatagtcgtagcg 30816879
Score = 56.0 bits (28), Expect = 7e-005
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 1100 cccacagcacgcggcggcgcttggccgggtcgtagaacgtcttggacgcgta 1151
||||||||||||| || |||| ||| ||||||||||||||||||||||||
Sbjct: 9276243 cccacagcacgcgccgtttcttgcccgcgtcgtagaacgtcttggacgcgta 9276192
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 77.8 bits (39), Expect = 2e-011
Identities = 69/79 (87%)
Strand = Plus / Minus
Query: 1094 cccatccccacagcacgcggcggcgcttggccgggtcgtagaacgtcttggacgcgtaga 1153
|||| |||||||||||||||||| || | |||| |||| ||||||||||||||||||||
Sbjct: 29949113 cccagccccacagcacgcggcggtgcctcgccgtgtcgaggaacgtcttggacgcgtaga 29949054
Query: 1154 acttgccccagtcgtagcg 1172
| ||||| ||||||||||
Sbjct: 29949053 agttgccatagtcgtagcg 29949035
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 77.8 bits (39), Expect = 2e-011
Identities = 69/79 (87%)
Strand = Plus / Minus
Query: 1094 cccatccccacagcacgcggcggcgcttggccgggtcgtagaacgtcttggacgcgtaga 1153
|||| |||||||||||||||||| || | |||| |||| ||||||||||||||||||||
Sbjct: 29857691 cccagccccacagcacgcggcggtgcctcgccgtgtcgaggaacgtcttggacgcgtaga 29857632
Query: 1154 acttgccccagtcgtagcg 1172
| ||||| ||||||||||
Sbjct: 29857631 agttgccatagtcgtagcg 29857613
>gb|AQ856945.1|AQ856945 nbeb0004J06r CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0004J06r, DNA sequence
Length = 487
Score = 69.9 bits (35), Expect = 5e-009
Identities = 50/55 (90%)
Strand = Plus / Minus
Query: 962 tctccacctcctccacgggccactgaagcaggttgctgcccgtcttggtgtccag 1016
||||||||||| |||| |||||||| |||||||||||||| ||||| ||||||||
Sbjct: 229 tctccacctccaccaccggccactggagcaggttgctgccagtcttcgtgtccag 175
>gb|AQ865627.1|AQ865627 nbeb0025D12r CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0025D12r, DNA sequence
Length = 796
Score = 69.9 bits (35), Expect = 5e-009
Identities = 50/55 (90%)
Strand = Plus / Minus
Query: 962 tctccacctcctccacgggccactgaagcaggttgctgcccgtcttggtgtccag 1016
||||||||||| |||| |||||||| |||||||||||||| ||||| ||||||||
Sbjct: 238 tctccacctccaccaccggccactggagcaggttgctgccagtcttcgtgtccag 184
>gb|C71989.1|C71989 C71989 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E0742_1A, mRNA sequence
Length = 386
Score = 69.9 bits (35), Expect = 5e-009
Identities = 50/55 (90%)
Strand = Plus / Minus
Query: 962 tctccacctcctccacgggccactgaagcaggttgctgcccgtcttggtgtccag 1016
||||||||||| |||| |||||||| |||||||||||||| ||||| ||||||||
Sbjct: 94 tctccacctccaccaccggccactggagcaggttgctgccagtcttcgtgtccag 40
>gb|CB651234.1|CB651234 OSJNEb16B24.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb16B24 5', mRNA sequence
Length = 793
Score = 69.9 bits (35), Expect = 5e-009
Identities = 50/55 (90%)
Strand = Plus / Minus
Query: 962 tctccacctcctccacgggccactgaagcaggttgctgcccgtcttggtgtccag 1016
||||||||||| |||| |||||||| |||||||||||||| ||||| ||||||||
Sbjct: 176 tctccacctccaccaccggccactggagcaggttgctgccagtcttcgtgtccag 122
>gb|CB675355.1|CB675355 OSJNEe11A24.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe11A24 3', mRNA sequence
Length = 819
Score = 65.9 bits (33), Expect = 7e-008
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 962 tctccacctcctccacgggccactgaagcaggttgctgcccgtcttggtgtcc 1014
||||||||||| |||| |||||||| |||||||||||||| ||||| ||||||
Sbjct: 767 tctccacctccaccaccggccactggagcaggttgctgccagtcttcgtgtcc 819
>gb|AY037871.2| Oryza sativa soluble acid invertase bfruct3 mRNA, complete cds
Length = 2481
Score = 60.0 bits (30), Expect = 5e-006
Identities = 87/106 (82%)
Strand = Plus / Minus
Query: 1749 ggtggcggaccccgtccacacgccgttggtgtcgtaccactggtcgggcaccatggccag 1808
||||||||| || | ||||||||||||| ||||||||| | ||| ||||||||||| |
Sbjct: 720 ggtggcggagccggaccacacgccgttgaggtcgtaccagttgtccggcaccatggcgat 661
Query: 1809 cgggaggcggcgccagcggatcaggtcgcgggacacggcgtggccc 1854
||||||| || ||||| ||| || || ||||||||||||||||
Sbjct: 660 cgggaggtggtgccagtggaggagatccttggacacggcgtggccc 615
Score = 46.1 bits (23), Expect = 0.069
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 1561 gtggtggggtcgcggaagtccttgggcccgatgcccgggggcgggtacagcaccgggtt 1619
||||| |||||||||||||| |||| || |||||||| ||||| || || ||||||||
Sbjct: 911 gtggtcgggtcgcggaagtctttggcgccaatgcccggcggcggatagaggaccgggtt 853
>gb|AACV01006309.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006309, whole
genome shotgun sequence
Length = 20500
Score = 56.0 bits (28), Expect = 7e-005
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 1100 cccacagcacgcggcggcgcttggccgggtcgtagaacgtcttggacgcgta 1151
||||||||||||| || |||| ||| ||||||||||||||||||||||||
Sbjct: 6747 cccacagcacgcgccgtttcttgcccgcgtcgtagaacgtcttggacgcgta 6798
>ref|XM_474245.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1782
Score = 56.0 bits (28), Expect = 7e-005
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 1100 cccacagcacgcggcggcgcttggccgggtcgtagaacgtcttggacgcgta 1151
||||||||||||| || |||| ||| ||||||||||||||||||||||||
Sbjct: 985 cccacagcacgcgccgtttcttgcccgcgtcgtagaacgtcttggacgcgta 934
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,321,780
Number of Sequences: 438736
Number of extensions: 3321780
Number of successful extensions: 43590
Number of sequences better than 0.5: 66
Number of HSP's better than 0.5 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 41634
Number of HSP's gapped (non-prelim): 1933
length of query: 1865
length of database: 2,800,419,916
effective HSP length: 22
effective length of query: 1843
effective length of database: 2,790,767,724
effective search space: 5143384915332
effective search space used: 5143384915332
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)