BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3829479.2.1
(1245 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AY553724.1| Oryza sativa (japonica cultivar-group) MADS-... 545 e-152
ref|NM_188300.1| Oryza sativa (japonica cultivar-group), p... 545 e-152
dbj|AK108568.1| Oryza sativa (japonica cultivar-group) cDNA... 418 e-114
dbj|AK111723.1| Oryza sativa (japonica cultivar-group) cDNA... 313 1e-082
dbj|AB232157.1| Oryza sativa (japonica cultivar-group) mRNA... 313 1e-082
gb|CV734295.1|CV734295 FLO--09-J13.b1 Rice flower lambda ph... 262 4e-067
gb|AACV01000383.1| Oryza sativa (japonica cultivar-group) c... 246 2e-062
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 246 2e-062
ref|NT_036312.3| Oryza sativa (japonica cultivar-group) 246 2e-062
dbj|AP003105.2| Oryza sativa (japonica cultivar-group) geno... 246 2e-062
dbj|AP003197.4| Oryza sativa (japonica cultivar-group) geno... 246 2e-062
gb|CH401164.1| Oryza sativa (japonica cultivar-group) chrom... 246 2e-062
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 246 2e-062
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 246 2e-062
gb|AC135920.2| Oryza sativa (japonica cultivar-group) chrom... 234 9e-059
gb|AACV01011127.1| Oryza sativa (japonica cultivar-group) c... 234 9e-059
ref|NT_107224.1| Oryza sativa (japonica cultivar-group) 234 9e-059
gb|CH401191.1| Oryza sativa (japonica cultivar-group) chrom... 234 9e-059
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 234 9e-059
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 234 9e-059
gb|AY551912.1| Oryza sativa (japonica cultivar-group) MADS-... 226 2e-056
dbj|AK070425.1| Oryza sativa (japonica cultivar-group) cDNA... 218 6e-054
gb|AY332475.1| Oryza sativa (japonica cultivar-group) MADS ... 218 6e-054
emb|AL513004.1|CNS07EFJ Oryza sativa (japonica cultivar-gro... 212 3e-052
emb|BX000560.1|CNS08CE6 Oryza sativa chromosome 12, . BAC O... 212 3e-052
emb|BX000346.3|CNS08CDC Oryza sativa chromosome 12, . BAC O... 212 3e-052
emb|BX649218.2|CNS09SBX Oryza sativa chromosome 12, . BAC B... 212 3e-052
ref|NT_107159.1| Oryza sativa (japonica cultivar-group) 212 3e-052
gb|AACV01024177.1| Oryza sativa (japonica cultivar-group) c... 212 3e-052
gb|CH401272.1| Oryza sativa (japonica cultivar-group) chrom... 212 3e-052
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 212 3e-052
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 212 3e-052
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 212 3e-052
gb|CB655394.1|CB655394 OSJNEc08M08.r OSJNEc Oryza sativa (j... 180 1e-042
gb|CB658195.1|CB658195 OSJNEc14A21.f OSJNEc Oryza sativa (j... 180 1e-042
gb|CB659436.1|CB659436 OSJNEc16G22.f OSJNEc Oryza sativa (j... 180 1e-042
gb|CF332627.1|CF332627 JMT--01-D10.b1 AtJMT-overexpressing ... 180 1e-042
gb|CF334759.1|CF334759 JMT--04-C18.b1 AtJMT-overexpressing ... 180 1e-042
dbj|AK070135.1| Oryza sativa (japonica cultivar-group) cDNA... 180 1e-042
gb|AY345224.1| Oryza sativa (japonica cultivar-group) trans... 180 1e-042
gb|AC092697.6| Oryza sativa chromosome 10 BAC OSJNBb0060I05... 180 1e-042
gb|AY551919.1| Oryza sativa (japonica cultivar-group) MADS-... 180 1e-042
gb|AACV01022000.1| Oryza sativa (japonica cultivar-group) c... 180 1e-042
ref|NM_197541.1| Oryza sativa (japonica cultivar-group) put... 180 1e-042
ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chr... 180 1e-042
gb|CH401254.1| Oryza sativa (japonica cultivar-group) chrom... 180 1e-042
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 180 1e-042
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 180 1e-042
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 180 1e-042
gb|AACV01011125.1| Oryza sativa (japonica cultivar-group) c... 165 7e-038
dbj|AK070540.1| Oryza sativa (japonica cultivar-group) cDNA... 159 4e-036
gb|AY551918.1| Oryza sativa (japonica cultivar-group) MADS-... 159 4e-036
gb|AACV01010373.1| Oryza sativa (japonica cultivar-group) c... 159 4e-036
ref|XM_473638.1| Oryza sativa (japonica cultivar-group), p... 159 4e-036
ref|NT_079865.2| Oryza sativa (japonica cultivar-group) 159 4e-036
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 159 4e-036
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 159 4e-036
emb|AL606688.3|OSJN00086 Oryza sativa genomic DNA, chromoso... 159 4e-036
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 159 4e-036
gb|D22380.1|D22380 RICC10934A Rice callus Oryza sativa (jap... 153 3e-034
gb|BP185086.1|BP185086 BP185086 pNS rice panicle cDNA, flow... 153 3e-034
gb|U78782.1|OSU78782 Oryza sativa MADS box protein (OsMADS6... 153 3e-034
dbj|AK069103.1| Oryza sativa (japonica cultivar-group) cDNA... 153 3e-034
dbj|AP004178.3| Oryza sativa (japonica cultivar-group) geno... 153 3e-034
gb|AACV01005162.1| Oryza sativa (japonica cultivar-group) c... 153 3e-034
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 153 3e-034
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 153 3e-034
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 153 3e-034
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 153 3e-034
gb|CF294135.1|CF294135 30DGS--03-I23.g1 Rice leaf plasmid c... 151 1e-033
gb|CF297258.1|CF297258 30DGS--07-P17.b1 Rice leaf plasmid c... 151 1e-033
dbj|AB003328.1| Oryza sativa (japonica cultivar-group) mRNA... 151 1e-033
dbj|AK067641.1| Oryza sativa (japonica cultivar-group) cDNA... 151 1e-033
dbj|AK104921.1| Oryza sativa (japonica cultivar-group) cDNA... 151 1e-033
gb|AY332476.1| Oryza sativa (japonica cultivar-group) MADS ... 151 1e-033
gb|AC098695.2| Oryza sativa (japonica cultivar-group) chrom... 151 1e-033
gb|AY551915.1| Oryza sativa (japonica cultivar-group) MADS-... 151 1e-033
gb|AACV01005781.1| Oryza sativa (japonica cultivar-group) c... 151 1e-033
ref|XM_468584.1| Oryza sativa (japonica cultivar-group), p... 151 1e-033
ref|NT_107183.1| Oryza sativa (japonica cultivar-group) 151 1e-033
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 151 1e-033
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 151 1e-033
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 151 1e-033
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 151 1e-033
gb|C75937.1|C75937 C75937 Rice callus Oryza sativa (japonic... 145 7e-032
gb|CF332154.1|CF332154 NACL--08-I21.g1 Rice callus plasmid ... 145 7e-032
dbj|AK069728.1| Oryza sativa (japonica cultivar-group) cDNA... 145 7e-032
dbj|AK070981.1| Oryza sativa (japonica cultivar-group) cDNA... 145 7e-032
gb|AC105732.3| Oryza sativa (japonica cultivar-group) chrom... 145 7e-032
gb|AC135158.2| Oryza sativa (japonica cultivar-group) chrom... 145 7e-032
gb|AACV01006102.1| Oryza sativa (japonica cultivar-group) c... 145 7e-032
ref|NT_107189.1| Oryza sativa (japonica cultivar-group) 145 7e-032
gb|AU068508.1|AU068508 AU068508 Rice callus Oryza sativa (j... 139 4e-030
gb|D46933.1|D46933 RICS11905A Rice green shoot Oryza sativa... 135 6e-029
dbj|AK070958.1| Oryza sativa (japonica cultivar-group) cDNA... 133 3e-028
gb|AY177693.1| Oryza sativa (japonica cultivar-group) trans... 133 3e-028
gb|AF229199.1|AF229199 Oryza sativa chromosome 1 clone OSJN... 133 3e-028
gb|AY551913.1| Oryza sativa (japonica cultivar-group) MADS-... 133 3e-028
gb|AACV01002820.1| Oryza sativa (japonica cultivar-group) c... 133 3e-028
ref|XM_463559.1| Oryza sativa (japonica cultivar-group), p... 133 3e-028
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 133 3e-028
dbj|AP003379.2| Oryza sativa (japonica cultivar-group) geno... 133 3e-028
dbj|AP003346.4| Oryza sativa (japonica cultivar-group) geno... 133 3e-028
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 133 3e-028
gb|CF315263.1|CF315263 HD--04-B23.b1 OsHDAC1-overexpressing... 129 4e-027
dbj|AB003324.1| Oryza sativa (japonica cultivar-group) mRNA... 127 2e-026
dbj|AK100227.1| Oryza sativa (japonica cultivar-group) cDNA... 127 2e-026
gb|AC135225.4| Oryza sativa chromosome 3 BAC OJ1112_G08 gen... 127 2e-026
gb|AC092556.8| Oryza sativa chromosome 3 BAC OSJNBa0047E24 ... 127 2e-026
gb|AY551917.1| Oryza sativa (japonica cultivar-group) MADS-... 127 2e-026
gb|AY551922.1| Oryza sativa (japonica cultivar-group) MADS-... 127 2e-026
gb|AY551926.1| Oryza sativa (japonica cultivar-group) MADS-... 127 2e-026
gb|AACV01007934.1| Oryza sativa (japonica cultivar-group) c... 127 2e-026
ref|XM_469790.1| Oryza sativa (japonica cultivar-group), mRNA 127 2e-026
ref|NT_107186.1| Oryza sativa (japonica cultivar-group) 127 2e-026
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 127 2e-026
gb|AF377947.3| Oryza sativa (japonica cultivar-group) chrom... 127 2e-026
gb|AQ578837.1|AQ578837 nbxb0093F09f CUGI Rice BAC Library O... 125 6e-026
gb|AU225854.1|AU225854 AU225854 Oryza sativa Koshihikari pi... 125 6e-026
dbj|AK100263.1| Oryza sativa (japonica cultivar-group) cDNA... 125 6e-026
gb|U78891.2|OSU78891 Oryza sativa MADS box protein (MADS7) ... 125 6e-026
dbj|AP005529.3| Oryza sativa (japonica cultivar-group) geno... 125 6e-026
gb|AY551921.1| Oryza sativa (japonica cultivar-group) MADS-... 125 6e-026
gb|AACV01018907.1| Oryza sativa (japonica cultivar-group) c... 125 6e-026
ref|XM_483487.1| Oryza sativa (japonica cultivar-group), mRNA 125 6e-026
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 125 6e-026
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 125 6e-026
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 125 6e-026
emb|Y15008.1|OSY15008 Oryza sativa mRNA for M79 protein 125 6e-026
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 125 6e-026
gb|AQ271415.1|AQ271415 nbxb0025B08f CUGI Rice BAC Library O... 121 1e-024
gb|AQ330858.1|AQ330858 nbxb0048E10f CUGI Rice BAC Library O... 121 1e-024
gb|AQ575051.1|AQ575051 nbxb0086L17r CUGI Rice BAC Library O... 121 1e-024
gb|AU225127.1|AU225127 AU225127 Oryza sativa Koshihikari pi... 121 1e-024
gb|U78890.1|OSU78890 Oryza sativa MADS box protein (OsMADS5... 121 1e-024
dbj|AK064184.1| Oryza sativa (japonica cultivar-group) cDNA... 121 1e-024
gb|AACV01013077.1| Oryza sativa (japonica cultivar-group) c... 121 1e-024
dbj|AB026295.2| Oryza sativa (japonica cultivar-group) geno... 121 1e-024
ref|NT_079872.2| Oryza sativa (japonica cultivar-group) 121 1e-024
ref|NM_185637.2| Oryza sativa (japonica cultivar-group), mRNA 121 1e-024
gb|CH401209.1| Oryza sativa (japonica cultivar-group) chrom... 121 1e-024
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 121 1e-024
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 121 1e-024
gb|AY332477.1| Oryza sativa (japonica cultivar-group) MADS ... 117 2e-023
dbj|AP006720.1| Oryza sativa (japonica cultivar-group) geno... 117 2e-023
dbj|AP004049.2| Oryza sativa (japonica cultivar-group) geno... 117 2e-023
gb|AACV01003159.1| Oryza sativa (japonica cultivar-group) c... 117 2e-023
ref|XM_463804.1| Oryza sativa (japonica cultivar-group), mRNA 117 2e-023
ref|NT_107175.1| Oryza sativa (japonica cultivar-group) 117 2e-023
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 117 2e-023
gb|CV720574.1|CV720574 YBH--01-B14.b1 Rice before heading y... 111 9e-022
gb|CV721367.1|CV721367 YBH--03-N20.b1 Rice before heading y... 111 9e-022
gb|U78892.1|OSU78892 Oryza sativa MADS box protein (OsMADS8... 111 9e-022
dbj|AK072867.1| Oryza sativa (japonica cultivar-group) cDNA... 111 9e-022
gb|AACV01020364.1| Oryza sativa (japonica cultivar-group) c... 111 9e-022
gb|AC108759.2| Oryza sativa (Japonica cultiva-group) chromo... 111 9e-022
gb|CH401242.1| Oryza sativa (japonica cultivar-group) chrom... 111 9e-022
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 111 9e-022
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 111 9e-022
gb|AY177701.1| Oryza sativa (japonica cultivar-group) trans... 105 6e-020
ref|XM_483489.1| Oryza sativa (japonica cultivar-group), mRNA 105 6e-020
dbj|AK069331.1| Oryza sativa (japonica cultivar-group) cDNA... 103 2e-019
gb|AY332478.1| Oryza sativa (japonica cultivar-group) MADS ... 103 2e-019
dbj|AK121171.1| Oryza sativa (japonica cultivar-group) cDNA... 103 2e-019
gb|AY551916.1| Oryza sativa (japonica cultivar-group) MADS-... 103 2e-019
ref|XM_469789.1| Oryza sativa (japonica cultivar-group), mRNA 103 2e-019
gb|CB652556.1|CB652556 OSJNEc02K24.f OSJNEc Oryza sativa (j... 101 9e-019
gb|CF306783.1|CF306783 HDA1--04-N10.g1 OsHDAC1-overexpressi... 101 9e-019
gb|CF322477.1|CF322477 HDN--01-C18.g1 OsHDAC1-overexpressin... 101 9e-019
gb|CF325684.1|CF325684 JMT1--03-O10.g1 AtJMT-overexpressing... 101 9e-019
dbj|AB003322.1| Oryza sativa (japonica cultivar-group) mRNA... 101 9e-019
dbj|AK064704.1| Oryza sativa (japonica cultivar-group) cDNA... 101 9e-019
dbj|AK070121.1| Oryza sativa (japonica cultivar-group) cDNA... 101 9e-019
dbj|AP004159.3| Oryza sativa (japonica cultivar-group) geno... 101 9e-019
dbj|AP005175.4| Oryza sativa (japonica cultivar-group) geno... 101 9e-019
gb|AACV01005456.1| Oryza sativa (japonica cultivar-group) c... 101 9e-019
gb|AACV01016746.1| Oryza sativa (japonica cultivar-group) c... 101 9e-019
ref|XM_467915.1| Oryza sativa (japonica cultivar-group), mRNA 101 9e-019
ref|XM_479092.1| Oryza sativa (japonica cultivar-group), mRNA 101 9e-019
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 101 9e-019
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 101 9e-019
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 101 9e-019
dbj|AB107957.1| Oryza sativa (japonica cultivar-group) RMD1... 101 9e-019
emb|AJ011675.1|OSA011675 Oryza sativa mRNA for MADS-box pro... 101 9e-019
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 101 9e-019
gb|D15657.2|D15657 RICC1032A Rice callus Oryza sativa (japo... 98 1e-017
dbj|AK100233.1| Oryza sativa (japonica cultivar-group) cDNA... 98 1e-017
gb|AC109595.2| Oryza sativa (japonica cultivar-group) chrom... 98 1e-017
gb|AACV01009916.1| Oryza sativa (japonica cultivar-group) c... 98 1e-017
gb|AACV01012211.1| Oryza sativa (japonica cultivar-group) c... 98 1e-017
ref|XM_472756.1| Oryza sativa (japonica cultivar-group), p... 98 1e-017
ref|NT_079863.2| Oryza sativa (japonica cultivar-group) 98 1e-017
ref|NT_107212.1| Oryza sativa (japonica cultivar-group) 98 1e-017
gb|CH401206.1| Oryza sativa (japonica cultivar-group) chrom... 98 1e-017
emb|AL606460.3|OSJN00003 Oryza sativa genomic DNA, chromoso... 98 1e-017
emb|BX842605.1|OSJN00299 Oryza sativa genomic DNA, chromoso... 98 1e-017
dbj|AP005174.1| Oryza sativa (japonica cultivar-group) chro... 96 6e-017
dbj|AP004762.3| Oryza sativa (japonica cultivar-group) geno... 96 6e-017
dbj|AP005148.3| Oryza sativa (japonica cultivar-group) geno... 96 6e-017
gb|AACV01018778.1| Oryza sativa (japonica cultivar-group) c... 96 6e-017
ref|XM_483124.1| Oryza sativa (japonica cultivar-group), mRNA 96 6e-017
gb|C98962.1|C98962 C98962 Rice panicle at flowering stage O... 90 3e-015
gb|CF336890.1|CF336890 JMT--07-B20.b1 AtJMT-overexpressing ... 90 3e-015
gb|CV721444.1|CV721444 YBH--04-C11.b1 Rice before heading y... 90 3e-015
dbj|AP003908.1| Oryza sativa (japonica cultivar-group) chro... 88 1e-014
gb|AY177694.1| Oryza sativa (japonica cultivar-group) trans... 88 1e-014
gb|AY345220.1| Oryza sativa (japonica cultivar-group) trans... 88 1e-014
gb|AACV01018525.1| Oryza sativa (japonica cultivar-group) c... 88 1e-014
ref|XM_482530.1| Oryza sativa (japonica cultivar-group), mRNA 88 1e-014
dbj|AP003868.3| Oryza sativa (japonica cultivar-group) geno... 88 1e-014
gb|AU078632.1|AU078632 AU078632 Rice callus Oryza sativa (j... 86 5e-014
gb|AU068577.1|AU068577 AU068577 Rice callus Oryza sativa (j... 84 2e-013
gb|AACV01012869.1| Oryza sativa (japonica cultivar-group) c... 82 8e-013
dbj|AP000616.2| Oryza sativa (japonica cultivar-group) geno... 82 8e-013
ref|NM_185350.1| Oryza sativa (japonica cultivar-group), mRNA 82 8e-013
ref|XM_550468.1| Oryza sativa (japonica cultivar-group), mRNA 82 8e-013
ref|NT_107230.2| Oryza sativa (japonica cultivar-group) 82 8e-013
gb|D47632.1|D47632 RICS13245A Rice green shoot Oryza sativa... 76 5e-011
gb|C73896.1|C73896 C73896 Rice panicle (longer than 10cm) O... 76 5e-011
gb|AU029711.1|AU029711 AU029711 Rice panicle shorter than 3... 76 5e-011
gb|C73941.2|C73941 C73941 Rice panicle (longer than 10cm) O... 76 5e-011
gb|CD670941.1|CD670941 OsMR362 5MT resistant rice mutant cD... 76 5e-011
dbj|AB003323.1| Oryza sativa (japonica cultivar-group) mRNA... 76 5e-011
dbj|AP004322.1| Oryza sativa (japonica cultivar-group) chro... 76 5e-011
dbj|AK069317.1| Oryza sativa (japonica cultivar-group) cDNA... 76 5e-011
dbj|AK111859.1| Oryza sativa (japonica cultivar-group) cDNA... 76 5e-011
gb|AY345223.2| Oryza sativa (japonica cultivar-group) trans... 76 5e-011
ref|NT_107234.1| Oryza sativa (japonica cultivar-group) 76 5e-011
dbj|AP004741.3| Oryza sativa (japonica cultivar-group) geno... 76 5e-011
gb|AACV01013305.1| Oryza sativa (japonica cultivar-group) c... 76 5e-011
gb|AACV01014909.1| Oryza sativa (japonica cultivar-group) c... 76 5e-011
ref|NT_079873.2| Oryza sativa (japonica cultivar-group) 76 5e-011
dbj|AP004329.3| Oryza sativa (japonica cultivar-group) geno... 76 5e-011
dbj|AP005463.3| Oryza sativa (japonica cultivar-group) geno... 76 5e-011
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 76 5e-011
gb|AACV01011126.1| Oryza sativa (japonica cultivar-group) c... 74 2e-010
gb|C74765.1|C74765 C74765 Rice cDNA from immature leaf incl... 72 8e-010
gb|AU100638.1|AU100638 AU100638 Rice callus Oryza sativa (j... 72 8e-010
ref|NT_079878.2| Oryza sativa (japonica cultivar-group) 72 8e-010
dbj|AP003951.3| Oryza sativa (japonica cultivar-group) geno... 72 8e-010
gb|AACV01014097.1| Oryza sativa (japonica cultivar-group) c... 72 8e-010
gb|CH401214.1| Oryza sativa (japonica cultivar-group) chrom... 72 8e-010
gb|C26796.1|C26796 C26796 Rice callus cDNA Oryza sativa (ja... 68 1e-008
gb|AF424549.1| Oryza sativa (japonica cultivar-group) MADS-... 68 1e-008
dbj|AK109522.1| Oryza sativa (japonica cultivar-group) cDNA... 68 1e-008
gb|AY345221.1| Oryza sativa (japonica cultivar-group) trans... 68 1e-008
gb|AY345222.1| Oryza sativa (japonica cultivar-group) trans... 68 1e-008
gb|AC125471.3| Oryza sativa (japonica cultivar-group) chrom... 68 1e-008
dbj|AP004836.2| Oryza sativa (japonica cultivar-group) geno... 68 1e-008
dbj|AP004113.3| Oryza sativa (japonica cultivar-group) geno... 68 1e-008
gb|AACV01003433.1| Oryza sativa (japonica cultivar-group) c... 68 1e-008
gb|AACV01006007.1| Oryza sativa (japonica cultivar-group) c... 68 1e-008
ref|XM_464283.1| Oryza sativa (japonica cultivar-group), mRNA 68 1e-008
ref|NT_079911.2| Oryza sativa (japonica cultivar-group) 68 1e-008
ref|NT_107176.1| Oryza sativa (japonica cultivar-group) 68 1e-008
emb|AJ536158.1|OSA536158 Oryza sativa (japonica cultivar-gr... 68 1e-008
gb|AZ128961.1|AZ128961 OSJNBb0068L10f CUGI Rice BAC Library... 66 5e-008
gb|CZ168542.1|CZ168542 UCDRGT395_5.1 UCD RGT Rice Insertion... 66 5e-008
gb|CA755986.1|CA755986 BR030032000_PLATE_E04_29_033.ab1 OA ... 66 5e-008
gb|CF322128.1|CF322128 HD--13-J23.b1 OsHDAC1-overexpressing... 66 5e-008
dbj|AP004766.1| Oryza sativa (japonica cultivar-group) chro... 66 5e-008
gb|AY174093.1| Oryza sativa (japonica cultivar-group) MADS3... 66 5e-008
gb|AY177696.1| Oryza sativa (japonica cultivar-group) trans... 66 5e-008
gb|AY551923.1| Oryza sativa (japonica cultivar-group) MADS-... 66 5e-008
gb|AACV01004772.1| Oryza sativa (japonica cultivar-group) c... 66 5e-008
dbj|AP006161.3| Oryza sativa (japonica cultivar-group) geno... 66 5e-008
ref|NT_107180.1| Oryza sativa (japonica cultivar-group) 66 5e-008
gb|AQ258059.1|AQ258059 nbxb0019L09f CUGI Rice BAC Library O... 62 8e-007
gb|AQ575165.1|AQ575165 nbxb0086H04f CUGI Rice BAC Library O... 62 8e-007
dbj|AP004616.1| Oryza sativa (japonica cultivar-group) chro... 62 8e-007
ref|NT_107233.1| Oryza sativa (japonica cultivar-group) 62 8e-007
dbj|AP003633.3| Oryza sativa (japonica cultivar-group) geno... 62 8e-007
dbj|AP005646.2| Oryza sativa (japonica cultivar-group) geno... 62 8e-007
gb|AACV01013861.1| Oryza sativa (japonica cultivar-group) c... 62 8e-007
gb|AACV01014754.1| Oryza sativa (japonica cultivar-group) c... 62 8e-007
gb|CH401212.1| Oryza sativa (japonica cultivar-group) chrom... 62 8e-007
gb|AQ050200.1|AQ050200 nbxb0003cD01r CUGI Rice BAC Library ... 60 3e-006
gb|D47001.1|D47001 RICS12021A Rice green shoot Oryza sativa... 60 3e-006
gb|C91691.1|C91691 C91691 Rice panicle shorter than 3cm Ory... 60 3e-006
gb|CB666400.1|CB666400 OSJNEd13E17.f OSJNEd Oryza sativa (j... 60 3e-006
gb|CB682181.1|CB682181 OSJNEf09D09.f OSJNEf Oryza sativa (j... 60 3e-006
gb|CF309429.1|CF309429 ABF--03-J22.g1 ABF3-overexpressing t... 60 3e-006
gb|CF327296.1|CF327296 NACL--01-L16.g1 Rice callus plasmid ... 60 3e-006
gb|CV731070.1|CV731070 FLO--04-O21.g1 Rice flower lambda ph... 60 3e-006
gb|AC090974.1|AC090974 Oryza sativa (japonica cultivar-grou... 60 3e-006
dbj|AB003327.1| Oryza sativa (japonica cultivar-group) mRNA... 60 3e-006
dbj|AP003405.1| Oryza sativa (japonica cultivar-group) chro... 60 3e-006
dbj|AP005010.1| Oryza sativa (japonica cultivar-group) chro... 60 3e-006
gb|AY224482.1| Oryza sativa (japonica cultivar-group) isola... 60 3e-006
dbj|AK066160.1| Oryza sativa (japonica cultivar-group) cDNA... 60 3e-006
dbj|AK070894.1| Oryza sativa (japonica cultivar-group) cDNA... 60 3e-006
gb|AY177702.1| Oryza sativa (japonica cultivar-group) trans... 60 3e-006
gb|AY551924.1| Oryza sativa (japonica cultivar-group) MADS-... 60 3e-006
dbj|AP004888.3| Oryza sativa (japonica cultivar-group) geno... 60 3e-006
dbj|AP005751.3| Oryza sativa (japonica cultivar-group) geno... 60 3e-006
dbj|AP003331.3| Oryza sativa (japonica cultivar-group) geno... 60 3e-006
gb|AACV01000976.1| Oryza sativa (japonica cultivar-group) c... 60 3e-006
gb|AACV01002803.1| Oryza sativa (japonica cultivar-group) c... 60 3e-006
gb|AACV01002956.1| Oryza sativa (japonica cultivar-group) c... 60 3e-006
gb|AACV01005341.1| Oryza sativa (japonica cultivar-group) c... 60 3e-006
ref|NM_183930.1| Oryza sativa (japonica cultivar-group), p... 60 3e-006
ref|XM_463532.1| Oryza sativa (japonica cultivar-group), p... 60 3e-006
ref|XM_467621.1| Oryza sativa (japonica cultivar-group), mRNA 60 3e-006
ref|NT_079923.2| Oryza sativa (japonica cultivar-group) 60 3e-006
ref|NT_079961.2| Oryza sativa (japonica cultivar-group) 60 3e-006
dbj|AP003561.2| Oryza sativa (japonica cultivar-group) geno... 60 3e-006
dbj|AP006167.3| Oryza sativa (japonica cultivar-group) geno... 60 3e-006
gb|CH401165.1| Oryza sativa (japonica cultivar-group) chrom... 60 3e-006
gb|AQ859547.1|AQ859547 nbeb0012L24f CUGI Rice BAC Library (... 58 1e-005
gb|AQ863705.1|AQ863705 nbeb0021L09f CUGI Rice BAC Library (... 58 1e-005
gb|C72923.1|C72923 C72923 Rice panicle at flowering stage O... 58 1e-005
gb|C74564.1|C74564 C74564 Rice panicle shorter than 3cm Ory... 58 1e-005
gb|CV733039.1|CV733039 FLO--07-M12.b1 Rice flower lambda ph... 58 1e-005
dbj|AB003325.1| Oryza sativa (japonica cultivar-group) mRNA... 58 1e-005
dbj|AP003759.2| Oryza sativa (japonica cultivar-group) geno... 58 1e-005
dbj|AK072683.1| Oryza sativa (japonica cultivar-group) cDNA... 58 1e-005
dbj|AK102927.1| Oryza sativa (japonica cultivar-group) cDNA... 58 1e-005
gb|AY177695.2| Oryza sativa (japonica cultivar-group) trans... 58 1e-005
gb|AY551920.1| Oryza sativa (japonica cultivar-group) MADS-... 58 1e-005
dbj|AP004342.5| Oryza sativa (japonica cultivar-group) geno... 58 1e-005
gb|AACV01009230.1| Oryza sativa (japonica cultivar-group) c... 58 1e-005
gb|AACV01015031.1| Oryza sativa (japonica cultivar-group) c... 58 1e-005
ref|XM_471721.1| Oryza sativa (japonica cultivar-group), p... 58 1e-005
ref|XM_476392.1| Oryza sativa (japonica cultivar-group), mRNA 58 1e-005
ref|NT_079856.2| Oryza sativa (japonica cultivar-group) 58 1e-005
ref|NT_079879.2| Oryza sativa (japonica cultivar-group) 58 1e-005
gb|CH401218.1| Oryza sativa (japonica cultivar-group) chrom... 58 1e-005
gb|CH401189.1| Oryza sativa (japonica cultivar-group) chrom... 58 1e-005
emb|AL731609.2|OSJN00259 Oryza sativa genomic DNA, chromoso... 58 1e-005
emb|AL731752.4|CNS08C81 Oryza sativa chromosome 12, . BAC O... 54 2e-004
gb|AY250075.1| Oryza sativa (japonica cultivar-group) MADS2... 54 2e-004
ref|NT_079837.2| Oryza sativa (japonica cultivar-group) 54 2e-004
gb|AACV01024998.1| Oryza sativa (japonica cultivar-group) c... 54 2e-004
gb|CH401281.1| Oryza sativa (japonica cultivar-group) chrom... 54 2e-004
gb|AQ866444.1|AQ866444 nbeb0028G05f CUGI Rice BAC Library (... 52 7e-004
gb|AQ856697.1|AQ856697 nbeb0004C09f CUGI Rice BAC Library (... 50 0.003
dbj|AG207961.1| Oryza sativa (japonica cultivar-group) DNA,... 50 0.003
gb|CV734296.1|CV734296 FLO--09-J13.g1 Rice flower lambda ph... 50 0.003
gb|AU095354.1|AU095354 AU095354 Rice cDNA from immature lea... 48 0.012
dbj|AB003326.1| Oryza sativa (japonica cultivar-group) mRNA... 48 0.012
dbj|AP003910.1| Oryza sativa (japonica cultivar-group) chro... 48 0.012
dbj|AK069122.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.012
gb|AY177697.1| Oryza sativa (japonica cultivar-group) trans... 48 0.012
dbj|AP004566.3| Oryza sativa (japonica cultivar-group) geno... 48 0.012
gb|AY551925.1| Oryza sativa (japonica cultivar-group) MADS-... 48 0.012
dbj|AP005156.4| Oryza sativa (japonica cultivar-group) geno... 48 0.012
dbj|AP003736.3| Oryza sativa (japonica cultivar-group) geno... 48 0.012
gb|AACV01002144.1| Oryza sativa (japonica cultivar-group) c... 48 0.012
gb|AACV01016495.1| Oryza sativa (japonica cultivar-group) c... 48 0.012
gb|AACV01017125.1| Oryza sativa (japonica cultivar-group) c... 48 0.012
ref|XM_479752.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.012
dbj|AP003450.3| Oryza sativa (japonica cultivar-group) geno... 48 0.012
gb|CH401228.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.012
gb|AC078840.6| Oryza sativa chromosome 10 BAC OSJNBb0073N24... 46 0.046
dbj|AP005758.3| Oryza sativa (japonica cultivar-group) geno... 46 0.046
gb|AACV01019142.1| Oryza sativa (japonica cultivar-group) c... 46 0.046
ref|NM_197220.1| Oryza sativa (japonica cultivar-group) put... 46 0.046
ref|NT_107076.1| Oryza sativa (japonica cultivar-group) 46 0.046
dbj|AP005894.3| Oryza sativa (japonica cultivar-group) geno... 46 0.046
gb|CH401232.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.046
gb|AACV01014099.1| Oryza sativa (japonica cultivar-group) c... 44 0.18
>gb|AY553724.1| Oryza sativa (japonica cultivar-group) MADS-like protein RMADS222
mRNA, complete cds
Length = 1051
Score = 545 bits (275), Expect = e-152
Identities = 452/511 (88%)
Strand = Plus / Minus
Query: 489 cttgctcctcaggtacatgttgtcagtctgcagatccatctcccttttttgcatatagtc 548
||||||||||||||||||||||||| ||||||| || | |||||||| ||||| || ||
Sbjct: 632 cttgctcctcaggtacatgttgtcattctgcagctcaacttcccttttctgcatgtactc 573
Query: 549 aacttcagcgtatagcagctcattctttctagctctaatcttgattatggctttctccag 608
||||||||| |||| |||||||||||||||||| || ||||| |||| ||||||||||
Sbjct: 572 aacttcagcatataacagctcattctttctagcccttatcttagctatgcctttctccag 513
Query: 609 cttgccctccatttgtttaagatccctgaggcccatggtgtggatggaatctcccactat 668
| || ||| | |||||||| |||||||||| |||||||| ||| ||||| ||||||||
Sbjct: 512 cctgttctctacctgtttaaggtccctgaggctcatggtgttgatagaatcccccactat 453
Query: 669 gttcctagtgtttgcgttttgcaagctgtggatcatctgtcgcagcttggaggactcctg 728
| ||||| |||||||||| || ||||| ||| || ||||| ||||||||||||||
Sbjct: 452 ggtcctactgtttgcgttctgtaagctactgatttgttggcgcagtttggaggactcctg 393
Query: 729 ctggtagtactgggcattgacttctgcaactgtgccagagttggaggagtcactgttggc 788
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct: 392 ctggtagtgctgggcattgacttctgcaactgtgccagagttggaggtgtcactgtttgc 333
Query: 789 cttcttgtacctctcaatggtggacttcacactgttgttggcgtactcgtagaggcggcc 848
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 332 cttcttgtacctctcaacggtggatttcacactgttgttggcgtactcgtagaggcggcc 273
Query: 849 gcggctggagaagacgacgagcgcgacctcggcgtcgcagagcaccgagagctcgtacgc 908
||||||||||||||||| ||| || ||||||||||||||||| || || |||||||||||
Sbjct: 272 gcggctggagaagacgatgagggcaacctcggcgtcgcagaggacggacagctcgtacgc 213
Query: 909 cttcttgagcaggccgttgcggcgcttgcagaaggtcacctgccggctcgtcgtgttctc 968
|||||| || ||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 212 cttcttcaggaggccattgcggcgcttgcagaaggtcacctgccggttcgtcgtgttctc 153
Query: 969 gatgcgcttgatctcgatcttgcctctcccc 999
||| ||||| ||||||||||| || ||||||
Sbjct: 152 gatccgctttatctcgatcttccccctcccc 122
>ref|NM_188300.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 744
Score = 545 bits (275), Expect = e-152
Identities = 452/511 (88%)
Strand = Plus / Minus
Query: 489 cttgctcctcaggtacatgttgtcagtctgcagatccatctcccttttttgcatatagtc 548
||||||||||||||||||||||||| ||||||| || | |||||||| ||||| || ||
Sbjct: 513 cttgctcctcaggtacatgttgtcattctgcagctcaacttcccttttctgcatgtactc 454
Query: 549 aacttcagcgtatagcagctcattctttctagctctaatcttgattatggctttctccag 608
||||||||| |||| |||||||||||||||||| || ||||| |||| ||||||||||
Sbjct: 453 aacttcagcatataacagctcattctttctagcccttatcttagctatgcctttctccag 394
Query: 609 cttgccctccatttgtttaagatccctgaggcccatggtgtggatggaatctcccactat 668
| || ||| | |||||||| |||||||||| |||||||| ||| ||||| ||||||||
Sbjct: 393 cctgttctctacctgtttaaggtccctgaggctcatggtgttgatagaatcccccactat 334
Query: 669 gttcctagtgtttgcgttttgcaagctgtggatcatctgtcgcagcttggaggactcctg 728
| ||||| |||||||||| || ||||| ||| || ||||| ||||||||||||||
Sbjct: 333 ggtcctactgtttgcgttctgtaagctactgatttgttggcgcagtttggaggactcctg 274
Query: 729 ctggtagtactgggcattgacttctgcaactgtgccagagttggaggagtcactgttggc 788
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct: 273 ctggtagtgctgggcattgacttctgcaactgtgccagagttggaggtgtcactgtttgc 214
Query: 789 cttcttgtacctctcaatggtggacttcacactgttgttggcgtactcgtagaggcggcc 848
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 213 cttcttgtacctctcaacggtggatttcacactgttgttggcgtactcgtagaggcggcc 154
Query: 849 gcggctggagaagacgacgagcgcgacctcggcgtcgcagagcaccgagagctcgtacgc 908
||||||||||||||||| ||| || ||||||||||||||||| || || |||||||||||
Sbjct: 153 gcggctggagaagacgatgagggcaacctcggcgtcgcagaggacggacagctcgtacgc 94
Query: 909 cttcttgagcaggccgttgcggcgcttgcagaaggtcacctgccggctcgtcgtgttctc 968
|||||| || ||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 93 cttcttcaggaggccattgcggcgcttgcagaaggtcacctgccggttcgtcgtgttctc 34
Query: 969 gatgcgcttgatctcgatcttgcctctcccc 999
||| ||||| ||||||||||| || ||||||
Sbjct: 33 gatccgctttatctcgatcttccccctcccc 3
>dbj|AK108568.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-145-D02, full
insert sequence
Length = 1511
Score = 418 bits (211), Expect = e-114
Identities = 271/291 (93%)
Strand = Plus / Minus
Query: 709 cgcagcttggaggactcctgctggtagtactgggcattgacttctgcaactgtgccagag 768
||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 639 cgcagtttggaggactcctgctggtagtgctgggcattgacttctgcaactgtgccagag 580
Query: 769 ttggaggagtcactgttggccttcttgtacctctcaatggtggacttcacactgttgttg 828
||||||| ||||||||| ||||||||||||||||||| |||||| |||||||||||||||
Sbjct: 579 ttggaggtgtcactgtttgccttcttgtacctctcaacggtggatttcacactgttgttg 520
Query: 829 gcgtactcgtagaggcggccgcggctggagaagacgacgagcgcgacctcggcgtcgcag 888
||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||
Sbjct: 519 gcgtactcgtagaggcggccgcggctggagaagacgatgagggcaacctcggcgtcgcag 460
Query: 889 agcaccgagagctcgtacgccttcttgagcaggccgttgcggcgcttgcagaaggtcacc 948
|| || || ||||||||||||||||| || ||||| ||||||||||||||||||||||||
Sbjct: 459 aggacggacagctcgtacgccttcttcaggaggccattgcggcgcttgcagaaggtcacc 400
Query: 949 tgccggctcgtcgtgttctcgatgcgcttgatctcgatcttgcctctcccc 999
|||||| |||||||||||||||| ||||| ||||||||||| || ||||||
Sbjct: 399 tgccggttcgtcgtgttctcgatccgctttatctcgatcttccccctcccc 349
Score = 149 bits (75), Expect = 4e-033
Identities = 159/187 (85%)
Strand = Plus / Minus
Query: 489 cttgctcctcaggtacatgttgtcagtctgcagatccatctcccttttttgcatatagtc 548
||||||||||||||||||||||||| ||||||| || | |||||||| ||||| || ||
Sbjct: 888 cttgctcctcaggtacatgttgtcattctgcagctcaacttcccttttctgcatgtactc 829
Query: 549 aacttcagcgtatagcagctcattctttctagctctaatcttgattatggctttctccag 608
||||||||| |||| |||||||||||||||||| || ||||| |||| ||||||||||
Sbjct: 828 aacttcagcatataacagctcattctttctagcccttatcttagctatgcctttctccag 769
Query: 609 cttgccctccatttgtttaagatccctgaggcccatggtgtggatggaatctcccactat 668
| || ||| | |||||||| |||||||||| |||||||| ||| ||||| ||||||||
Sbjct: 768 cctgttctctacctgtttaaggtccctgaggctcatggtgttgatagaatcccccactat 709
Query: 669 gttccta 675
| |||||
Sbjct: 708 ggtccta 702
Score = 54.0 bits (27), Expect = 2e-004
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 1057 gacgacggcccgcagctcagatcagtcatcatgtt 1091
||||| ||||||||||||||||| |||||||||||
Sbjct: 267 gacgatggcccgcagctcagatcggtcatcatgtt 233
>dbj|AK111723.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023027E19, full
insert sequence
Length = 1071
Score = 313 bits (158), Expect = 1e-082
Identities = 239/266 (89%)
Strand = Plus / Minus
Query: 724 tcctgctggtagtactgggcattgacttctgcaactgtgccagagttggaggagtcactg 783
||||||||||||| ||||||||||| ||||||||||| | | |||||||| |||||||
Sbjct: 508 tcctgctggtagtgctgggcattgatctctgcaactgtactggcgttggaggtgtcactg 449
Query: 784 ttggccttcttgtacctctcaatggtggacttcacactgttgttggcgtactcgtagagg 843
||||| ||||||||||||||||| || |||||| |||||||||| |||||||||||||
Sbjct: 448 ttggctttcttgtacctctcaatagtttccttcacgctgttgttggagtactcgtagagg 389
Query: 844 cggccgcggctggagaagacgacgagcgcgacctcggcgtcgcagagcaccgagagctcg 903
||||| |||||||||||||||||||| ||||||||||| ||||||||||| ||||||||
Sbjct: 388 cggccacggctggagaagacgacgagggcgacctcggcatcgcagagcacggagagctca 329
Query: 904 tacgccttcttgagcaggccgttgcggcgcttgcagaaggtcacctgccggctcgtcgtg 963
|||||||||||||| || ||| |||||||||||||||||||||| || ||| ||||||||
Sbjct: 328 tacgccttcttgagtagcccgctgcggcgcttgcagaaggtcacttgacggttcgtcgtg 269
Query: 964 ttctcgatgcgcttgatctcgatctt 989
|||||||||||||||||||| |||||
Sbjct: 268 ttctcgatgcgcttgatctcaatctt 243
Score = 50.1 bits (25), Expect = 0.003
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 501 gtacatgttgtcagtctgcagatccatctcccttttttgcatatagtcaacttcagc 557
||||||||||||| ||||||| ||| | |||||| | |||||||| |||| ||||||
Sbjct: 728 gtacatgttgtcattctgcagctccgtttcccttctctgcatatactcaatttcagc 672
>dbj|AB232157.1| Oryza sativa (japonica cultivar-group) mRNA for transcription
factor OsMADS58, complete cds
Length = 1181
Score = 313 bits (158), Expect = 1e-082
Identities = 239/266 (89%)
Strand = Plus / Minus
Query: 724 tcctgctggtagtactgggcattgacttctgcaactgtgccagagttggaggagtcactg 783
||||||||||||| ||||||||||| ||||||||||| | | |||||||| |||||||
Sbjct: 508 tcctgctggtagtgctgggcattgatctctgcaactgtactggcgttggaggtgtcactg 449
Query: 784 ttggccttcttgtacctctcaatggtggacttcacactgttgttggcgtactcgtagagg 843
||||| ||||||||||||||||| || |||||| |||||||||| |||||||||||||
Sbjct: 448 ttggctttcttgtacctctcaatagtttccttcacgctgttgttggagtactcgtagagg 389
Query: 844 cggccgcggctggagaagacgacgagcgcgacctcggcgtcgcagagcaccgagagctcg 903
||||| |||||||||||||||||||| ||||||||||| ||||||||||| ||||||||
Sbjct: 388 cggccacggctggagaagacgacgagggcgacctcggcatcgcagagcacggagagctca 329
Query: 904 tacgccttcttgagcaggccgttgcggcgcttgcagaaggtcacctgccggctcgtcgtg 963
|||||||||||||| || ||| |||||||||||||||||||||| || ||| ||||||||
Sbjct: 328 tacgccttcttgagtagcccgctgcggcgcttgcagaaggtcacttgacggttcgtcgtg 269
Query: 964 ttctcgatgcgcttgatctcgatctt 989
|||||||||||||||||||| |||||
Sbjct: 268 ttctcgatgcgcttgatctcaatctt 243
Score = 50.1 bits (25), Expect = 0.003
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 501 gtacatgttgtcagtctgcagatccatctcccttttttgcatatagtcaacttcagc 557
||||||||||||| ||||||| ||| | |||||| | |||||||| |||| ||||||
Sbjct: 728 gtacatgttgtcattctgcagctccgtttcccttctctgcatatactcaatttcagc 672
>gb|CV734295.1|CV734295 FLO--09-J13.b1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--09-J13,
mRNA sequence
Length = 519
Score = 262 bits (132), Expect = 4e-067
Identities = 201/224 (89%)
Strand = Plus / Minus
Query: 724 tcctgctggtagtactgggcattgacttctgcaactgtgccagagttggaggagtcactg 783
||||||||||||| ||||||||||| ||||||||||| | | |||||||| |||||||
Sbjct: 270 tcctgctggtagtgctgggcattgatctctgcaactgtactggcgttggaggtgtcactg 211
Query: 784 ttggccttcttgtacctctcaatggtggacttcacactgttgttggcgtactcgtagagg 843
||||| ||||||||||||||||| || |||||| |||||||||| |||||||||||||
Sbjct: 210 ttggctttcttgtacctctcaatagtttccttcacgctgttgttggagtactcgtagagg 151
Query: 844 cggccgcggctggagaagacgacgagcgcgacctcggcgtcgcagagcaccgagagctcg 903
||||| |||||||||||||||||||| ||||||||||| ||||||||||| ||||||||
Sbjct: 150 cggccacggctggagaagacgacgagggcgacctcggcatcgcagagcacggagagctca 91
Query: 904 tacgccttcttgagcaggccgttgcggcgcttgcagaaggtcac 947
|||||||||||||| || ||| ||||||||||||||||||||||
Sbjct: 90 tacgccttcttgagtagcccgctgcggcgcttgcagaaggtcac 47
Score = 50.1 bits (25), Expect = 0.003
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 501 gtacatgttgtcagtctgcagatccatctcccttttttgcatatagtcaacttcagc 557
||||||||||||| ||||||| ||| | |||||| | |||||||| |||| ||||||
Sbjct: 490 gtacatgttgtcattctgcagctccgtttcccttctctgcatatactcaatttcagc 434
>gb|AACV01000383.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg000383, whole
genome shotgun sequence
Length = 32294
Score = 246 bits (124), Expect = 2e-062
Identities = 166/180 (92%)
Strand = Plus / Plus
Query: 820 ctgttgttggcgtactcgtagaggcggccgcggctggagaagacgacgagcgcgacctcg 879
|||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||
Sbjct: 20516 ctgttgttggcgtactcgtagaggcggccgcggctggagaagacgatgagggcaacctcg 20575
Query: 880 gcgtcgcagagcaccgagagctcgtacgccttcttgagcaggccgttgcggcgcttgcag 939
||||||||||| || || ||||||||||||||||| || ||||| |||||||||||||||
Sbjct: 20576 gcgtcgcagaggacggacagctcgtacgccttcttcaggaggccattgcggcgcttgcag 20635
Query: 940 aaggtcacctgccggctcgtcgtgttctcgatgcgcttgatctcgatcttgcctctcccc 999
||||||||||||||| |||||||||||||||| ||||| ||||||||||| || ||||||
Sbjct: 20636 aaggtcacctgccggttcgtcgtgttctcgatccgctttatctcgatcttccccctcccc 20695
Score = 137 bits (69), Expect = 2e-029
Identities = 81/85 (95%)
Strand = Plus / Plus
Query: 738 ctgggcattgacttctgcaactgtgccagagttggaggagtcactgttggccttcttgta 797
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 15087 ctgggcattgacttctgcaactgtgccagagttggaggtgtcactgtttgccttcttgta 15146
Query: 798 cctctcaatggtggacttcacactg 822
|||||||| |||||| |||||||||
Sbjct: 15147 cctctcaacggtggatttcacactg 15171
Score = 58.0 bits (29), Expect = 1e-005
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 489 cttgctcctcaggtacatgttgtcagtctgcag 521
||||||||||||||||||||||||| |||||||
Sbjct: 13325 cttgctcctcaggtacatgttgtcattctgcag 13357
Score = 50.1 bits (25), Expect = 0.003
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 530 cccttttttgcatatagtcaacttcagcgtatagcagctcattct 574
||||||| ||||| || ||||||||||| |||| |||||||||||
Sbjct: 13487 cccttttctgcatgtactcaacttcagcatataacagctcattct 13531
Score = 48.1 bits (24), Expect = 0.012
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 709 cgcagcttggaggactcctgctggtagt 736
||||| ||||||||||||||||||||||
Sbjct: 13948 cgcagtttggaggactcctgctggtagt 13975
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 246 bits (124), Expect = 2e-062
Identities = 166/180 (92%)
Strand = Plus / Plus
Query: 820 ctgttgttggcgtactcgtagaggcggccgcggctggagaagacgacgagcgcgacctcg 879
|||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||
Sbjct: 5564849 ctgttgttggcgtactcgtagaggcggccgcggctggagaagacgatgagggcaacctcg 5564908
Query: 880 gcgtcgcagagcaccgagagctcgtacgccttcttgagcaggccgttgcggcgcttgcag 939
||||||||||| || || ||||||||||||||||| || ||||| |||||||||||||||
Sbjct: 5564909 gcgtcgcagaggacggacagctcgtacgccttcttcaggaggccattgcggcgcttgcag 5564968
Query: 940 aaggtcacctgccggctcgtcgtgttctcgatgcgcttgatctcgatcttgcctctcccc 999
||||||||||||||| |||||||||||||||| ||||| ||||||||||| || ||||||
Sbjct: 5564969 aaggtcacctgccggttcgtcgtgttctcgatccgctttatctcgatcttccccctcccc 5565028
Score = 137 bits (69), Expect = 2e-029
Identities = 81/85 (95%)
Strand = Plus / Plus
Query: 738 ctgggcattgacttctgcaactgtgccagagttggaggagtcactgttggccttcttgta 797
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 5559420 ctgggcattgacttctgcaactgtgccagagttggaggtgtcactgtttgccttcttgta 5559479
Query: 798 cctctcaatggtggacttcacactg 822
|||||||| |||||| |||||||||
Sbjct: 5559480 cctctcaacggtggatttcacactg 5559504
Score = 133 bits (67), Expect = 3e-028
Identities = 142/167 (85%)
Strand = Plus / Minus
Query: 833 actcgtagaggcggccgcggctggagaagacgacgagcgcgacctcggcgtcgcagagca 892
|||| |||||||| || |||||||||||||||| ||| |||| ||| ||||||||||| |
Sbjct: 38575959 actcatagaggcgtcctcggctggagaagacgatgagtgcgatctcagcgtcgcagagta 38575900
Query: 893 ccgagagctcgtacgccttcttgagcaggccgttgcggcgcttgcagaaggtcacctgcc 952
| ||||||||| |||||||| ||||| || || | ||||||||||||||||||||| |
Sbjct: 38575899 tggcgagctcgtaggccttcttcagcagcccattcctgcgcttgcagaaggtcacctgac 38575840
Query: 953 ggctcgtcgtgttctcgatgcgcttgatctcgatcttgcctctcccc 999
|||||||| |||||||||| | ||| ||||| ||||| || ||||||
Sbjct: 38575839 ggctcgtcttgttctcgattctctttatctcaatcttccccctcccc 38575793
Score = 60.0 bits (30), Expect = 3e-006
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 855 ggagaagacgacgagcgcgacctcggcgtcgcagagcaccgagagctcgtacgccttctt 914
||||||||||| |||||| ||||| |||||||||||| | ||||||| ||||||||||
Sbjct: 40417688 ggagaagacgaggagcgccacctccacgtcgcagagcagggcgagctcgaacgccttctt 40417629
Query: 915 ga 916
||
Sbjct: 40417628 ga 40417627
Score = 60.0 bits (30), Expect = 3e-006
Identities = 111/138 (80%)
Strand = Plus / Plus
Query: 852 gctggagaagacgacgagcgcgacctcggcgtcgcagagcaccgagagctcgtacgcctt 911
||||||||||| ||||| |||||||||||||||| || || || |||| |||||
Sbjct: 38397597 gctggagaagatgacgacgccgacctcggcgtcgcacaggacgctgatctcgcgggcctt 38397656
Query: 912 cttgagcaggccgttgcggcgcttgcagaaggtcacctgccggctcgtcgtgttctcgat 971
|||||| | ||| | | ||||||| ||||||||||||| ||| | || | |||||||||
Sbjct: 38397657 cttgaggatcccgctcctgcgcttggagaaggtcacctggcggttggtggagttctcgat 38397716
Query: 972 gcgcttgatctcgatctt 989
| |||||||||||||||
Sbjct: 38397717 cctcttgatctcgatctt 38397734
Score = 60.0 bits (30), Expect = 3e-006
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 861 gacgacgagcgcgacctcggcgtcgcagagcaccgagagctc 902
|||||||| |||||| | ||||||||||||||||||||||||
Sbjct: 13347217 gacgacgaccgcgacttgggcgtcgcagagcaccgagagctc 13347176
Score = 58.0 bits (29), Expect = 1e-005
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 489 cttgctcctcaggtacatgttgtcagtctgcag 521
||||||||||||||||||||||||| |||||||
Sbjct: 5557658 cttgctcctcaggtacatgttgtcattctgcag 5557690
Score = 50.1 bits (25), Expect = 0.003
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 530 cccttttttgcatatagtcaacttcagcgtatagcagctcattct 574
||||||| ||||| || ||||||||||| |||| |||||||||||
Sbjct: 5557820 cccttttctgcatgtactcaacttcagcatataacagctcattct 5557864
Score = 48.1 bits (24), Expect = 0.012
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 1021 cccgtcggcgccgccgccacctgctcct 1048
|||||||||||||||||||||| |||||
Sbjct: 28675781 cccgtcggcgccgccgccacctcctcct 28675754
Score = 48.1 bits (24), Expect = 0.012
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 709 cgcagcttggaggactcctgctggtagt 736
||||| ||||||||||||||||||||||
Sbjct: 5558281 cgcagtttggaggactcctgctggtagt 5558308
>ref|NT_036312.3| Oryza sativa (japonica cultivar-group)
Length = 10050053
Score = 246 bits (124), Expect = 2e-062
Identities = 166/180 (92%)
Strand = Plus / Plus
Query: 820 ctgttgttggcgtactcgtagaggcggccgcggctggagaagacgacgagcgcgacctcg 879
|||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||
Sbjct: 5564689 ctgttgttggcgtactcgtagaggcggccgcggctggagaagacgatgagggcaacctcg 5564748
Query: 880 gcgtcgcagagcaccgagagctcgtacgccttcttgagcaggccgttgcggcgcttgcag 939
||||||||||| || || ||||||||||||||||| || ||||| |||||||||||||||
Sbjct: 5564749 gcgtcgcagaggacggacagctcgtacgccttcttcaggaggccattgcggcgcttgcag 5564808
Query: 940 aaggtcacctgccggctcgtcgtgttctcgatgcgcttgatctcgatcttgcctctcccc 999
||||||||||||||| |||||||||||||||| ||||| ||||||||||| || ||||||
Sbjct: 5564809 aaggtcacctgccggttcgtcgtgttctcgatccgctttatctcgatcttccccctcccc 5564868
Score = 137 bits (69), Expect = 2e-029
Identities = 81/85 (95%)
Strand = Plus / Plus
Query: 738 ctgggcattgacttctgcaactgtgccagagttggaggagtcactgttggccttcttgta 797
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 5559260 ctgggcattgacttctgcaactgtgccagagttggaggtgtcactgtttgccttcttgta 5559319
Query: 798 cctctcaatggtggacttcacactg 822
|||||||| |||||| |||||||||
Sbjct: 5559320 cctctcaacggtggatttcacactg 5559344
Score = 58.0 bits (29), Expect = 1e-005
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 489 cttgctcctcaggtacatgttgtcagtctgcag 521
||||||||||||||||||||||||| |||||||
Sbjct: 5557498 cttgctcctcaggtacatgttgtcattctgcag 5557530
Score = 50.1 bits (25), Expect = 0.003
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 530 cccttttttgcatatagtcaacttcagcgtatagcagctcattct 574
||||||| ||||| || ||||||||||| |||| |||||||||||
Sbjct: 5557660 cccttttctgcatgtactcaacttcagcatataacagctcattct 5557704
Score = 48.1 bits (24), Expect = 0.012
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 709 cgcagcttggaggactcctgctggtagt 736
||||| ||||||||||||||||||||||
Sbjct: 5558121 cgcagtttggaggactcctgctggtagt 5558148
>dbj|AP003105.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0489A05
Length = 158815
Score = 246 bits (124), Expect = 2e-062
Identities = 166/180 (92%)
Strand = Plus / Plus
Query: 820 ctgttgttggcgtactcgtagaggcggccgcggctggagaagacgacgagcgcgacctcg 879
|||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||
Sbjct: 32540 ctgttgttggcgtactcgtagaggcggccgcggctggagaagacgatgagggcaacctcg 32599
Query: 880 gcgtcgcagagcaccgagagctcgtacgccttcttgagcaggccgttgcggcgcttgcag 939
||||||||||| || || ||||||||||||||||| || ||||| |||||||||||||||
Sbjct: 32600 gcgtcgcagaggacggacagctcgtacgccttcttcaggaggccattgcggcgcttgcag 32659
Query: 940 aaggtcacctgccggctcgtcgtgttctcgatgcgcttgatctcgatcttgcctctcccc 999
||||||||||||||| |||||||||||||||| ||||| ||||||||||| || ||||||
Sbjct: 32660 aaggtcacctgccggttcgtcgtgttctcgatccgctttatctcgatcttccccctcccc 32719
Score = 137 bits (69), Expect = 2e-029
Identities = 81/85 (95%)
Strand = Plus / Plus
Query: 738 ctgggcattgacttctgcaactgtgccagagttggaggagtcactgttggccttcttgta 797
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 27111 ctgggcattgacttctgcaactgtgccagagttggaggtgtcactgtttgccttcttgta 27170
Query: 798 cctctcaatggtggacttcacactg 822
|||||||| |||||| |||||||||
Sbjct: 27171 cctctcaacggtggatttcacactg 27195
Score = 58.0 bits (29), Expect = 1e-005
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 489 cttgctcctcaggtacatgttgtcagtctgcag 521
||||||||||||||||||||||||| |||||||
Sbjct: 25349 cttgctcctcaggtacatgttgtcattctgcag 25381
Score = 50.1 bits (25), Expect = 0.003
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 530 cccttttttgcatatagtcaacttcagcgtatagcagctcattct 574
||||||| ||||| || ||||||||||| |||| |||||||||||
Sbjct: 25511 cccttttctgcatgtactcaacttcagcatataacagctcattct 25555
Score = 48.1 bits (24), Expect = 0.012
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 709 cgcagcttggaggactcctgctggtagt 736
||||| ||||||||||||||||||||||
Sbjct: 25972 cgcagtttggaggactcctgctggtagt 25999
>dbj|AP003197.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:B1015E06
Length = 164583
Score = 246 bits (124), Expect = 2e-062
Identities = 166/180 (92%)
Strand = Plus / Plus
Query: 820 ctgttgttggcgtactcgtagaggcggccgcggctggagaagacgacgagcgcgacctcg 879
|||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||
Sbjct: 163907 ctgttgttggcgtactcgtagaggcggccgcggctggagaagacgatgagggcaacctcg 163966
Query: 880 gcgtcgcagagcaccgagagctcgtacgccttcttgagcaggccgttgcggcgcttgcag 939
||||||||||| || || ||||||||||||||||| || ||||| |||||||||||||||
Sbjct: 163967 gcgtcgcagaggacggacagctcgtacgccttcttcaggaggccattgcggcgcttgcag 164026
Query: 940 aaggtcacctgccggctcgtcgtgttctcgatgcgcttgatctcgatcttgcctctcccc 999
||||||||||||||| |||||||||||||||| ||||| ||||||||||| || ||||||
Sbjct: 164027 aaggtcacctgccggttcgtcgtgttctcgatccgctttatctcgatcttccccctcccc 164086
Score = 137 bits (69), Expect = 2e-029
Identities = 81/85 (95%)
Strand = Plus / Plus
Query: 738 ctgggcattgacttctgcaactgtgccagagttggaggagtcactgttggccttcttgta 797
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 158478 ctgggcattgacttctgcaactgtgccagagttggaggtgtcactgtttgccttcttgta 158537
Query: 798 cctctcaatggtggacttcacactg 822
|||||||| |||||| |||||||||
Sbjct: 158538 cctctcaacggtggatttcacactg 158562
Score = 58.0 bits (29), Expect = 1e-005
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 489 cttgctcctcaggtacatgttgtcagtctgcag 521
||||||||||||||||||||||||| |||||||
Sbjct: 156716 cttgctcctcaggtacatgttgtcattctgcag 156748
Score = 50.1 bits (25), Expect = 0.003
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 530 cccttttttgcatatagtcaacttcagcgtatagcagctcattct 574
||||||| ||||| || ||||||||||| |||| |||||||||||
Sbjct: 156878 cccttttctgcatgtactcaacttcagcatataacagctcattct 156922
Score = 48.1 bits (24), Expect = 0.012
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 709 cgcagcttggaggactcctgctggtagt 736
||||| ||||||||||||||||||||||
Sbjct: 157339 cgcagtttggaggactcctgctggtagt 157366
>gb|CH401164.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000001 genomic
scaffold, whole genome shotgun sequence
Length = 11616395
Score = 246 bits (124), Expect = 2e-062
Identities = 166/180 (92%)
Strand = Plus / Plus
Query: 820 ctgttgttggcgtactcgtagaggcggccgcggctggagaagacgacgagcgcgacctcg 879
|||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||
Sbjct: 5556030 ctgttgttggcgtactcgtagaggcggccgcggctggagaagacgatgagggcaacctcg 5556089
Query: 880 gcgtcgcagagcaccgagagctcgtacgccttcttgagcaggccgttgcggcgcttgcag 939
||||||||||| || || ||||||||||||||||| || ||||| |||||||||||||||
Sbjct: 5556090 gcgtcgcagaggacggacagctcgtacgccttcttcaggaggccattgcggcgcttgcag 5556149
Query: 940 aaggtcacctgccggctcgtcgtgttctcgatgcgcttgatctcgatcttgcctctcccc 999
||||||||||||||| |||||||||||||||| ||||| ||||||||||| || ||||||
Sbjct: 5556150 aaggtcacctgccggttcgtcgtgttctcgatccgctttatctcgatcttccccctcccc 5556209
Score = 137 bits (69), Expect = 2e-029
Identities = 81/85 (95%)
Strand = Plus / Plus
Query: 738 ctgggcattgacttctgcaactgtgccagagttggaggagtcactgttggccttcttgta 797
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 5550601 ctgggcattgacttctgcaactgtgccagagttggaggtgtcactgtttgccttcttgta 5550660
Query: 798 cctctcaatggtggacttcacactg 822
|||||||| |||||| |||||||||
Sbjct: 5550661 cctctcaacggtggatttcacactg 5550685
Score = 58.0 bits (29), Expect = 1e-005
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 489 cttgctcctcaggtacatgttgtcagtctgcag 521
||||||||||||||||||||||||| |||||||
Sbjct: 5548839 cttgctcctcaggtacatgttgtcattctgcag 5548871
Score = 50.1 bits (25), Expect = 0.003
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 530 cccttttttgcatatagtcaacttcagcgtatagcagctcattct 574
||||||| ||||| || ||||||||||| |||| |||||||||||
Sbjct: 5549001 cccttttctgcatgtactcaacttcagcatataacagctcattct 5549045
Score = 48.1 bits (24), Expect = 0.012
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 709 cgcagcttggaggactcctgctggtagt 736
||||| ||||||||||||||||||||||
Sbjct: 5549462 cgcagtttggaggactcctgctggtagt 5549489
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 246 bits (124), Expect = 2e-062
Identities = 166/180 (92%)
Strand = Plus / Plus
Query: 820 ctgttgttggcgtactcgtagaggcggccgcggctggagaagacgacgagcgcgacctcg 879
|||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||
Sbjct: 5556030 ctgttgttggcgtactcgtagaggcggccgcggctggagaagacgatgagggcaacctcg 5556089
Query: 880 gcgtcgcagagcaccgagagctcgtacgccttcttgagcaggccgttgcggcgcttgcag 939
||||||||||| || || ||||||||||||||||| || ||||| |||||||||||||||
Sbjct: 5556090 gcgtcgcagaggacggacagctcgtacgccttcttcaggaggccattgcggcgcttgcag 5556149
Query: 940 aaggtcacctgccggctcgtcgtgttctcgatgcgcttgatctcgatcttgcctctcccc 999
||||||||||||||| |||||||||||||||| ||||| ||||||||||| || ||||||
Sbjct: 5556150 aaggtcacctgccggttcgtcgtgttctcgatccgctttatctcgatcttccccctcccc 5556209
Score = 137 bits (69), Expect = 2e-029
Identities = 81/85 (95%)
Strand = Plus / Plus
Query: 738 ctgggcattgacttctgcaactgtgccagagttggaggagtcactgttggccttcttgta 797
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 5550601 ctgggcattgacttctgcaactgtgccagagttggaggtgtcactgtttgccttcttgta 5550660
Query: 798 cctctcaatggtggacttcacactg 822
|||||||| |||||| |||||||||
Sbjct: 5550661 cctctcaacggtggatttcacactg 5550685
Score = 133 bits (67), Expect = 3e-028
Identities = 142/167 (85%)
Strand = Plus / Minus
Query: 833 actcgtagaggcggccgcggctggagaagacgacgagcgcgacctcggcgtcgcagagca 892
|||| |||||||| || |||||||||||||||| ||| |||| ||| ||||||||||| |
Sbjct: 37964176 actcatagaggcgtcctcggctggagaagacgatgagtgcgatctcagcgtcgcagagta 37964117
Query: 893 ccgagagctcgtacgccttcttgagcaggccgttgcggcgcttgcagaaggtcacctgcc 952
| ||||||||| |||||||| ||||| || || | ||||||||||||||||||||| |
Sbjct: 37964116 tggcgagctcgtaggccttcttcagcagcccattcctgcgcttgcagaaggtcacctgac 37964057
Query: 953 ggctcgtcgtgttctcgatgcgcttgatctcgatcttgcctctcccc 999
|||||||| |||||||||| | ||| ||||| ||||| || ||||||
Sbjct: 37964056 ggctcgtcttgttctcgattctctttatctcaatcttccccctcccc 37964010
Score = 60.0 bits (30), Expect = 3e-006
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 855 ggagaagacgacgagcgcgacctcggcgtcgcagagcaccgagagctcgtacgccttctt 914
||||||||||| |||||| ||||| |||||||||||| | ||||||| ||||||||||
Sbjct: 39821648 ggagaagacgaggagcgccacctccacgtcgcagagcagggcgagctcgaacgccttctt 39821589
Query: 915 ga 916
||
Sbjct: 39821588 ga 39821587
Score = 60.0 bits (30), Expect = 3e-006
Identities = 111/138 (80%)
Strand = Plus / Plus
Query: 852 gctggagaagacgacgagcgcgacctcggcgtcgcagagcaccgagagctcgtacgcctt 911
||||||||||| ||||| |||||||||||||||| || || || |||| |||||
Sbjct: 37788411 gctggagaagatgacgacgccgacctcggcgtcgcacaggacgctgatctcgcgggcctt 37788470
Query: 912 cttgagcaggccgttgcggcgcttgcagaaggtcacctgccggctcgtcgtgttctcgat 971
|||||| | ||| | | ||||||| ||||||||||||| ||| | || | |||||||||
Sbjct: 37788471 cttgaggatcccgctcctgcgcttggagaaggtcacctggcggttggtggagttctcgat 37788530
Query: 972 gcgcttgatctcgatctt 989
| |||||||||||||||
Sbjct: 37788531 cctcttgatctcgatctt 37788548
Score = 60.0 bits (30), Expect = 3e-006
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 861 gacgacgagcgcgacctcggcgtcgcagagcaccgagagctc 902
|||||||| |||||| | ||||||||||||||||||||||||
Sbjct: 13224892 gacgacgaccgcgacttgggcgtcgcagagcaccgagagctc 13224851
Score = 58.0 bits (29), Expect = 1e-005
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 489 cttgctcctcaggtacatgttgtcagtctgcag 521
||||||||||||||||||||||||| |||||||
Sbjct: 5548839 cttgctcctcaggtacatgttgtcattctgcag 5548871
Score = 50.1 bits (25), Expect = 0.003
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 530 cccttttttgcatatagtcaacttcagcgtatagcagctcattct 574
||||||| ||||| || ||||||||||| |||| |||||||||||
Sbjct: 5549001 cccttttctgcatgtactcaacttcagcatataacagctcattct 5549045
Score = 48.1 bits (24), Expect = 0.012
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 1021 cccgtcggcgccgccgccacctgctcct 1048
|||||||||||||||||||||| |||||
Sbjct: 28263009 cccgtcggcgccgccgccacctcctcct 28262982
Score = 48.1 bits (24), Expect = 0.012
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 709 cgcagcttggaggactcctgctggtagt 736
||||| ||||||||||||||||||||||
Sbjct: 5549462 cgcagtttggaggactcctgctggtagt 5549489
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 246 bits (124), Expect = 2e-062
Identities = 166/180 (92%)
Strand = Plus / Plus
Query: 820 ctgttgttggcgtactcgtagaggcggccgcggctggagaagacgacgagcgcgacctcg 879
|||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||
Sbjct: 5567067 ctgttgttggcgtactcgtagaggcggccgcggctggagaagacgatgagggcaacctcg 5567126
Query: 880 gcgtcgcagagcaccgagagctcgtacgccttcttgagcaggccgttgcggcgcttgcag 939
||||||||||| || || ||||||||||||||||| || ||||| |||||||||||||||
Sbjct: 5567127 gcgtcgcagaggacggacagctcgtacgccttcttcaggaggccattgcggcgcttgcag 5567186
Query: 940 aaggtcacctgccggctcgtcgtgttctcgatgcgcttgatctcgatcttgcctctcccc 999
||||||||||||||| |||||||||||||||| ||||| ||||||||||| || ||||||
Sbjct: 5567187 aaggtcacctgccggttcgtcgtgttctcgatccgctttatctcgatcttccccctcccc 5567246
Score = 137 bits (69), Expect = 2e-029
Identities = 81/85 (95%)
Strand = Plus / Plus
Query: 738 ctgggcattgacttctgcaactgtgccagagttggaggagtcactgttggccttcttgta 797
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 5561638 ctgggcattgacttctgcaactgtgccagagttggaggtgtcactgtttgccttcttgta 5561697
Query: 798 cctctcaatggtggacttcacactg 822
|||||||| |||||| |||||||||
Sbjct: 5561698 cctctcaacggtggatttcacactg 5561722
Score = 133 bits (67), Expect = 3e-028
Identities = 142/167 (85%)
Strand = Plus / Minus
Query: 833 actcgtagaggcggccgcggctggagaagacgacgagcgcgacctcggcgtcgcagagca 892
|||| |||||||| || |||||||||||||||| ||| |||| ||| ||||||||||| |
Sbjct: 38495289 actcatagaggcgtcctcggctggagaagacgatgagtgcgatctcagcgtcgcagagta 38495230
Query: 893 ccgagagctcgtacgccttcttgagcaggccgttgcggcgcttgcagaaggtcacctgcc 952
| ||||||||| |||||||| ||||| || || | ||||||||||||||||||||| |
Sbjct: 38495229 tggcgagctcgtaggccttcttcagcagcccattcctgcgcttgcagaaggtcacctgac 38495170
Query: 953 ggctcgtcgtgttctcgatgcgcttgatctcgatcttgcctctcccc 999
|||||||| |||||||||| | ||| ||||| ||||| || ||||||
Sbjct: 38495169 ggctcgtcttgttctcgattctctttatctcaatcttccccctcccc 38495123
Score = 60.0 bits (30), Expect = 3e-006
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 855 ggagaagacgacgagcgcgacctcggcgtcgcagagcaccgagagctcgtacgccttctt 914
||||||||||| |||||| ||||| |||||||||||| | ||||||| ||||||||||
Sbjct: 40337018 ggagaagacgaggagcgccacctccacgtcgcagagcagggcgagctcgaacgccttctt 40336959
Query: 915 ga 916
||
Sbjct: 40336958 ga 40336957
Score = 60.0 bits (30), Expect = 3e-006
Identities = 111/138 (80%)
Strand = Plus / Plus
Query: 852 gctggagaagacgacgagcgcgacctcggcgtcgcagagcaccgagagctcgtacgcctt 911
||||||||||| ||||| |||||||||||||||| || || || |||| |||||
Sbjct: 38316927 gctggagaagatgacgacgccgacctcggcgtcgcacaggacgctgatctcgcgggcctt 38316986
Query: 912 cttgagcaggccgttgcggcgcttgcagaaggtcacctgccggctcgtcgtgttctcgat 971
|||||| | ||| | | ||||||| ||||||||||||| ||| | || | |||||||||
Sbjct: 38316987 cttgaggatcccgctcctgcgcttggagaaggtcacctggcggttggtggagttctcgat 38317046
Query: 972 gcgcttgatctcgatctt 989
| |||||||||||||||
Sbjct: 38317047 cctcttgatctcgatctt 38317064
Score = 60.0 bits (30), Expect = 3e-006
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 861 gacgacgagcgcgacctcggcgtcgcagagcaccgagagctc 902
|||||||| |||||| | ||||||||||||||||||||||||
Sbjct: 13349435 gacgacgaccgcgacttgggcgtcgcagagcaccgagagctc 13349394
Score = 58.0 bits (29), Expect = 1e-005
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 489 cttgctcctcaggtacatgttgtcagtctgcag 521
||||||||||||||||||||||||| |||||||
Sbjct: 5559876 cttgctcctcaggtacatgttgtcattctgcag 5559908
Score = 50.1 bits (25), Expect = 0.003
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 530 cccttttttgcatatagtcaacttcagcgtatagcagctcattct 574
||||||| ||||| || ||||||||||| |||| |||||||||||
Sbjct: 5560038 cccttttctgcatgtactcaacttcagcatataacagctcattct 5560082
Score = 48.1 bits (24), Expect = 0.012
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 1021 cccgtcggcgccgccgccacctgctcct 1048
|||||||||||||||||||||| |||||
Sbjct: 28595111 cccgtcggcgccgccgccacctcctcct 28595084
Score = 48.1 bits (24), Expect = 0.012
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 709 cgcagcttggaggactcctgctggtagt 736
||||| ||||||||||||||||||||||
Sbjct: 5560499 cgcagtttggaggactcctgctggtagt 5560526
>gb|AC135920.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
OSJNBa0015G13, complete sequence
Length = 143966
Score = 234 bits (118), Expect = 9e-059
Identities = 157/170 (92%)
Strand = Plus / Plus
Query: 820 ctgttgttggcgtactcgtagaggcggccgcggctggagaagacgacgagcgcgacctcg 879
|||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 76958 ctgttgttggagtactcgtagaggcggccacggctggagaagacgacgagggcgacctcg 77017
Query: 880 gcgtcgcagagcaccgagagctcgtacgccttcttgagcaggccgttgcggcgcttgcag 939
|| ||||||||||| |||||||| |||||||||||||| || ||| ||||||||||||||
Sbjct: 77018 gcatcgcagagcacggagagctcatacgccttcttgagtagcccgctgcggcgcttgcag 77077
Query: 940 aaggtcacctgccggctcgtcgtgttctcgatgcgcttgatctcgatctt 989
|||||||| || ||| |||||||||||||||||||||||||||| |||||
Sbjct: 77078 aaggtcacttgacggttcgtcgtgttctcgatgcgcttgatctcaatctt 77127
Score = 165 bits (83), Expect = 7e-038
Identities = 119/131 (90%)
Strand = Plus / Plus
Query: 820 ctgttgttggcgtactcgtagaggcggccgcggctggagaagacgacgagcgcgacctcg 879
|||||||||| ||||||||||||||||||||||||||||||||||| ||| || ||||||
Sbjct: 53604 ctgttgttggagtactcgtagaggcggccgcggctggagaagacgatgagggcaacctcg 53663
Query: 880 gcgtcgcagagcaccgagagctcgtacgccttcttgagcaggccgttgcggcgcttgcag 939
|| |||||||||| |||||||| |||||||||||||| || ||||||| ||||||||||
Sbjct: 53664 gcatcgcagagcatggagagctcatacgccttcttgagtagcccgttgcagcgcttgcag 53723
Query: 940 aaggtcacctg 950
||||| |||||
Sbjct: 53724 aaggtgacctg 53734
Score = 73.8 bits (37), Expect = 2e-010
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 738 ctgggcattgacttctgcaactgtgccagagttggaggagtcactgttggccttcttgta 797
||||||||||| ||||||||||| | | |||||||| |||||||||||| ||||||||
Sbjct: 68808 ctgggcattgatctctgcaactgtactggcgttggaggtgtcactgttggctttcttgta 68867
Query: 798 cctctcaat 806
|||||||||
Sbjct: 68868 cctctcaat 68876
Score = 65.9 bits (33), Expect = 5e-008
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 738 ctgggcattgacttctgcaactgtgccagagttggaggagtcactgttggccttcttgta 797
||||||||||| ||||||||||| | | ||||||| |||||||||||| ||||||||
Sbjct: 47577 ctgggcattgatctctgcaactgtactggtattggaggtgtcactgttggctttcttgta 47636
Query: 798 cctctcaat 806
|||||||||
Sbjct: 47637 cctctcaat 47645
>gb|AACV01011127.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg011127, whole
genome shotgun sequence
Length = 7784
Score = 234 bits (118), Expect = 9e-059
Identities = 157/170 (92%)
Strand = Plus / Plus
Query: 820 ctgttgttggcgtactcgtagaggcggccgcggctggagaagacgacgagcgcgacctcg 879
|||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 1134 ctgttgttggagtactcgtagaggcggccacggctggagaagacgacgagggcgacctcg 1193
Query: 880 gcgtcgcagagcaccgagagctcgtacgccttcttgagcaggccgttgcggcgcttgcag 939
|| ||||||||||| |||||||| |||||||||||||| || ||| ||||||||||||||
Sbjct: 1194 gcatcgcagagcacggagagctcatacgccttcttgagtagcccgctgcggcgcttgcag 1253
Query: 940 aaggtcacctgccggctcgtcgtgttctcgatgcgcttgatctcgatctt 989
|||||||| || ||| |||||||||||||||||||||||||||| |||||
Sbjct: 1254 aaggtcacttgacggttcgtcgtgttctcgatgcgcttgatctcaatctt 1303
>ref|NT_107224.1| Oryza sativa (japonica cultivar-group)
Length = 975437
Score = 234 bits (118), Expect = 9e-059
Identities = 157/170 (92%)
Strand = Plus / Plus
Query: 820 ctgttgttggcgtactcgtagaggcggccgcggctggagaagacgacgagcgcgacctcg 879
|||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 908429 ctgttgttggagtactcgtagaggcggccacggctggagaagacgacgagggcgacctcg 908488
Query: 880 gcgtcgcagagcaccgagagctcgtacgccttcttgagcaggccgttgcggcgcttgcag 939
|| ||||||||||| |||||||| |||||||||||||| || ||| ||||||||||||||
Sbjct: 908489 gcatcgcagagcacggagagctcatacgccttcttgagtagcccgctgcggcgcttgcag 908548
Query: 940 aaggtcacctgccggctcgtcgtgttctcgatgcgcttgatctcgatctt 989
|||||||| || ||| |||||||||||||||||||||||||||| |||||
Sbjct: 908549 aaggtcacttgacggttcgtcgtgttctcgatgcgcttgatctcaatctt 908598
Score = 165 bits (83), Expect = 7e-038
Identities = 119/131 (90%)
Strand = Plus / Plus
Query: 820 ctgttgttggcgtactcgtagaggcggccgcggctggagaagacgacgagcgcgacctcg 879
|||||||||| ||||||||||||||||||||||||||||||||||| ||| || ||||||
Sbjct: 885075 ctgttgttggagtactcgtagaggcggccgcggctggagaagacgatgagggcaacctcg 885134
Query: 880 gcgtcgcagagcaccgagagctcgtacgccttcttgagcaggccgttgcggcgcttgcag 939
|| |||||||||| |||||||| |||||||||||||| || ||||||| ||||||||||
Sbjct: 885135 gcatcgcagagcatggagagctcatacgccttcttgagtagcccgttgcagcgcttgcag 885194
Query: 940 aaggtcacctg 950
||||| |||||
Sbjct: 885195 aaggtgacctg 885205
Score = 73.8 bits (37), Expect = 2e-010
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 738 ctgggcattgacttctgcaactgtgccagagttggaggagtcactgttggccttcttgta 797
||||||||||| ||||||||||| | | |||||||| |||||||||||| ||||||||
Sbjct: 900279 ctgggcattgatctctgcaactgtactggcgttggaggtgtcactgttggctttcttgta 900338
Query: 798 cctctcaat 806
|||||||||
Sbjct: 900339 cctctcaat 900347
Score = 65.9 bits (33), Expect = 5e-008
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 738 ctgggcattgacttctgcaactgtgccagagttggaggagtcactgttggccttcttgta 797
||||||||||| ||||||||||| | | ||||||| |||||||||||| ||||||||
Sbjct: 879048 ctgggcattgatctctgcaactgtactggtattggaggtgtcactgttggctttcttgta 879107
Query: 798 cctctcaat 806
|||||||||
Sbjct: 879108 cctctcaat 879116
>gb|CH401191.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000028 genomic
scaffold, whole genome shotgun sequence
Length = 7678539
Score = 234 bits (118), Expect = 9e-059
Identities = 157/170 (92%)
Strand = Plus / Plus
Query: 820 ctgttgttggcgtactcgtagaggcggccgcggctggagaagacgacgagcgcgacctcg 879
|||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 6266294 ctgttgttggagtactcgtagaggcggccacggctggagaagacgacgagggcgacctcg 6266353
Query: 880 gcgtcgcagagcaccgagagctcgtacgccttcttgagcaggccgttgcggcgcttgcag 939
|| ||||||||||| |||||||| |||||||||||||| || ||| ||||||||||||||
Sbjct: 6266354 gcatcgcagagcacggagagctcatacgccttcttgagtagcccgctgcggcgcttgcag 6266413
Query: 940 aaggtcacctgccggctcgtcgtgttctcgatgcgcttgatctcgatctt 989
|||||||| || ||| |||||||||||||||||||||||||||| |||||
Sbjct: 6266414 aaggtcacttgacggttcgtcgtgttctcgatgcgcttgatctcaatctt 6266463
Score = 165 bits (83), Expect = 7e-038
Identities = 119/131 (90%)
Strand = Plus / Plus
Query: 820 ctgttgttggcgtactcgtagaggcggccgcggctggagaagacgacgagcgcgacctcg 879
|||||||||| ||||||||||||||||||||||||||||||||||| ||| || ||||||
Sbjct: 6240832 ctgttgttggagtactcgtagaggcggccgcggctggagaagacgatgagggcaacctcg 6240891
Query: 880 gcgtcgcagagcaccgagagctcgtacgccttcttgagcaggccgttgcggcgcttgcag 939
|| |||||||||| |||||||| |||||||||||||| || ||||||| ||||||||||
Sbjct: 6240892 gcatcgcagagcatggagagctcatacgccttcttgagtagcccgttgcagcgcttgcag 6240951
Query: 940 aaggtcacctg 950
||||| |||||
Sbjct: 6240952 aaggtgacctg 6240962
Score = 73.8 bits (37), Expect = 2e-010
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 738 ctgggcattgacttctgcaactgtgccagagttggaggagtcactgttggccttcttgta 797
||||||||||| ||||||||||| | | |||||||| |||||||||||| ||||||||
Sbjct: 6258263 ctgggcattgatctctgcaactgtactggcgttggaggtgtcactgttggctttcttgta 6258322
Query: 798 cctctcaat 806
|||||||||
Sbjct: 6258323 cctctcaat 6258331
Score = 65.9 bits (33), Expect = 5e-008
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 738 ctgggcattgacttctgcaactgtgccagagttggaggagtcactgttggccttcttgta 797
||||||||||| ||||||||||| | | ||||||| |||||||||||| ||||||||
Sbjct: 6234805 ctgggcattgatctctgcaactgtactggtattggaggtgtcactgttggctttcttgta 6234864
Query: 798 cctctcaat 806
|||||||||
Sbjct: 6234865 cctctcaat 6234873
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 234 bits (118), Expect = 9e-059
Identities = 157/170 (92%)
Strand = Plus / Plus
Query: 820 ctgttgttggcgtactcgtagaggcggccgcggctggagaagacgacgagcgcgacctcg 879
|||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 6266294 ctgttgttggagtactcgtagaggcggccacggctggagaagacgacgagggcgacctcg 6266353
Query: 880 gcgtcgcagagcaccgagagctcgtacgccttcttgagcaggccgttgcggcgcttgcag 939
|| ||||||||||| |||||||| |||||||||||||| || ||| ||||||||||||||
Sbjct: 6266354 gcatcgcagagcacggagagctcatacgccttcttgagtagcccgctgcggcgcttgcag 6266413
Query: 940 aaggtcacctgccggctcgtcgtgttctcgatgcgcttgatctcgatctt 989
|||||||| || ||| |||||||||||||||||||||||||||| |||||
Sbjct: 6266414 aaggtcacttgacggttcgtcgtgttctcgatgcgcttgatctcaatctt 6266463
Score = 165 bits (83), Expect = 7e-038
Identities = 119/131 (90%)
Strand = Plus / Plus
Query: 820 ctgttgttggcgtactcgtagaggcggccgcggctggagaagacgacgagcgcgacctcg 879
|||||||||| ||||||||||||||||||||||||||||||||||| ||| || ||||||
Sbjct: 6240832 ctgttgttggagtactcgtagaggcggccgcggctggagaagacgatgagggcaacctcg 6240891
Query: 880 gcgtcgcagagcaccgagagctcgtacgccttcttgagcaggccgttgcggcgcttgcag 939
|| |||||||||| |||||||| |||||||||||||| || ||||||| ||||||||||
Sbjct: 6240892 gcatcgcagagcatggagagctcatacgccttcttgagtagcccgttgcagcgcttgcag 6240951
Query: 940 aaggtcacctg 950
||||| |||||
Sbjct: 6240952 aaggtgacctg 6240962
Score = 97.6 bits (49), Expect = 1e-017
Identities = 118/141 (83%)
Strand = Plus / Minus
Query: 852 gctggagaagacgacgagcgcgacctcggcgtcgcagagcaccgagagctcgtacgcctt 911
||||||||||| ||||| |||||||||||||||||||||| || |||| |||||
Sbjct: 20269198 gctggagaagatgacgacgccgacctcggcgtcgcagagcacgccgatctcgcgggcctt 20269139
Query: 912 cttgagcaggccgttgcggcgcttgcagaaggtcacctgccggctcgtcgtgttctcgat 971
|||||| | ||| ||||||||| |||| |||||||||||| |||||| |||||||||
Sbjct: 20269138 cttgagtatcccggcgcggcgcttcgagaacgtcacctgccggttcgtcgagttctcgat 20269079
Query: 972 gcgcttgatctcgatcttgcc 992
| ||||||||||||||||||
Sbjct: 20269078 cctcttgatctcgatcttgcc 20269058
Score = 73.8 bits (37), Expect = 2e-010
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 738 ctgggcattgacttctgcaactgtgccagagttggaggagtcactgttggccttcttgta 797
||||||||||| ||||||||||| | | |||||||| |||||||||||| ||||||||
Sbjct: 6258263 ctgggcattgatctctgcaactgtactggcgttggaggtgtcactgttggctttcttgta 6258322
Query: 798 cctctcaat 806
|||||||||
Sbjct: 6258323 cctctcaat 6258331
Score = 65.9 bits (33), Expect = 5e-008
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 738 ctgggcattgacttctgcaactgtgccagagttggaggagtcactgttggccttcttgta 797
||||||||||| ||||||||||| | | ||||||| |||||||||||| ||||||||
Sbjct: 6234805 ctgggcattgatctctgcaactgtactggtattggaggtgtcactgttggctttcttgta 6234864
Query: 798 cctctcaat 806
|||||||||
Sbjct: 6234865 cctctcaat 6234873
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 234 bits (118), Expect = 9e-059
Identities = 157/170 (92%)
Strand = Plus / Plus
Query: 820 ctgttgttggcgtactcgtagaggcggccgcggctggagaagacgacgagcgcgacctcg 879
|||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 6375219 ctgttgttggagtactcgtagaggcggccacggctggagaagacgacgagggcgacctcg 6375278
Query: 880 gcgtcgcagagcaccgagagctcgtacgccttcttgagcaggccgttgcggcgcttgcag 939
|| ||||||||||| |||||||| |||||||||||||| || ||| ||||||||||||||
Sbjct: 6375279 gcatcgcagagcacggagagctcatacgccttcttgagtagcccgctgcggcgcttgcag 6375338
Query: 940 aaggtcacctgccggctcgtcgtgttctcgatgcgcttgatctcgatctt 989
|||||||| || ||| |||||||||||||||||||||||||||| |||||
Sbjct: 6375339 aaggtcacttgacggttcgtcgtgttctcgatgcgcttgatctcaatctt 6375388
Score = 165 bits (83), Expect = 7e-038
Identities = 119/131 (90%)
Strand = Plus / Plus
Query: 820 ctgttgttggcgtactcgtagaggcggccgcggctggagaagacgacgagcgcgacctcg 879
|||||||||| ||||||||||||||||||||||||||||||||||| ||| || ||||||
Sbjct: 6351865 ctgttgttggagtactcgtagaggcggccgcggctggagaagacgatgagggcaacctcg 6351924
Query: 880 gcgtcgcagagcaccgagagctcgtacgccttcttgagcaggccgttgcggcgcttgcag 939
|| |||||||||| |||||||| |||||||||||||| || ||||||| ||||||||||
Sbjct: 6351925 gcatcgcagagcatggagagctcatacgccttcttgagtagcccgttgcagcgcttgcag 6351984
Query: 940 aaggtcacctg 950
||||| |||||
Sbjct: 6351985 aaggtgacctg 6351995
Score = 97.6 bits (49), Expect = 1e-017
Identities = 118/141 (83%)
Strand = Plus / Minus
Query: 852 gctggagaagacgacgagcgcgacctcggcgtcgcagagcaccgagagctcgtacgcctt 911
||||||||||| ||||| |||||||||||||||||||||| || |||| |||||
Sbjct: 20615511 gctggagaagatgacgacgccgacctcggcgtcgcagagcacgccgatctcgcgggcctt 20615452
Query: 912 cttgagcaggccgttgcggcgcttgcagaaggtcacctgccggctcgtcgtgttctcgat 971
|||||| | ||| ||||||||| |||| |||||||||||| |||||| |||||||||
Sbjct: 20615451 cttgagtatcccggcgcggcgcttcgagaacgtcacctgccggttcgtcgagttctcgat 20615392
Query: 972 gcgcttgatctcgatcttgcc 992
| ||||||||||||||||||
Sbjct: 20615391 cctcttgatctcgatcttgcc 20615371
Score = 73.8 bits (37), Expect = 2e-010
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 738 ctgggcattgacttctgcaactgtgccagagttggaggagtcactgttggccttcttgta 797
||||||||||| ||||||||||| | | |||||||| |||||||||||| ||||||||
Sbjct: 6367069 ctgggcattgatctctgcaactgtactggcgttggaggtgtcactgttggctttcttgta 6367128
Query: 798 cctctcaat 806
|||||||||
Sbjct: 6367129 cctctcaat 6367137
Score = 65.9 bits (33), Expect = 5e-008
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 738 ctgggcattgacttctgcaactgtgccagagttggaggagtcactgttggccttcttgta 797
||||||||||| ||||||||||| | | ||||||| |||||||||||| ||||||||
Sbjct: 6345838 ctgggcattgatctctgcaactgtactggtattggaggtgtcactgttggctttcttgta 6345897
Query: 798 cctctcaat 806
|||||||||
Sbjct: 6345898 cctctcaat 6345906
>gb|AY551912.1| Oryza sativa (japonica cultivar-group) MADS-box protein RMADS206
mRNA, complete cds
Length = 914
Score = 226 bits (114), Expect = 2e-056
Identities = 191/216 (88%), Gaps = 3/216 (1%)
Strand = Plus / Minus
Query: 787 gccttcttgtacctctcaatggtggacttcacactg---ttgttggcgtactcgtagagg 843
|||||||||||||| ||||| || | |||||||||| ||||||| |||||||||||||
Sbjct: 365 gccttcttgtacctgtcaattgtagccttcacactgctgttgttggagtactcgtagagg 306
Query: 844 cggccgcggctggagaagacgacgagcgcgacctcggcgtcgcagagcaccgagagctcg 903
||||| |||||||||||||||| ||| || |||||||| |||||||| || ||||||||
Sbjct: 305 cggccacggctggagaagacgatgagagccacctcggcatcgcagaggacggagagctca 246
Query: 904 tacgccttcttgagcaggccgttgcggcgcttgcagaaggtcacctgccggctcgtcgtg 963
|||||||||||||| || ||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 245 tacgccttcttgagaagtccgttgcggcgcttgcagaaggtcacctggcggcttgtcgtg 186
Query: 964 ttctcgatgcgcttgatctcgatcttgcctctcccc 999
|||||||| | ||||||||| ||| |||| ||||||
Sbjct: 185 ttctcgatcctcttgatctcaatcctgcccctcccc 150
>dbj|AK070425.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023050A03, full
insert sequence
Length = 1214
Score = 218 bits (110), Expect = 6e-054
Identities = 190/216 (87%), Gaps = 3/216 (1%)
Strand = Plus / Minus
Query: 787 gccttcttgtacctctcaatggtggacttcacactgttgttg---gcgtactcgtagagg 843
|||||||||||||| ||||| || | ||||||| |||||||| | |||||||||||||
Sbjct: 283 gccttcttgtacctgtcaattgtagccttcacattgttgttgttggagtactcgtagagg 224
Query: 844 cggccgcggctggagaagacgacgagcgcgacctcggcgtcgcagagcaccgagagctcg 903
||||| |||||||||||||||| ||| || |||||||| |||||||| || ||||||||
Sbjct: 223 cggccacggctggagaagacgatgagagccacctcggcatcgcagaggacggagagctca 164
Query: 904 tacgccttcttgagcaggccgttgcggcgcttgcagaaggtcacctgccggctcgtcgtg 963
|||||||||||||| || ||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 163 tacgccttcttgagaagtccgttgcggcgcttgcagaaggtcacctggcggcttgtcgtg 104
Query: 964 ttctcgatgcgcttgatctcgatcttgcctctcccc 999
|||||||| | ||||||||| ||| |||| ||||||
Sbjct: 103 ttctcgatcctcttgatctcaatcctgcccctcccc 68
>gb|AY332475.1| Oryza sativa (japonica cultivar-group) MADS protein (MAF1) mRNA,
complete cds
Length = 1010
Score = 218 bits (110), Expect = 6e-054
Identities = 190/216 (87%), Gaps = 3/216 (1%)
Strand = Plus / Minus
Query: 787 gccttcttgtacctctcaatggtggacttcacactgttgttg---gcgtactcgtagagg 843
|||||||||||||| ||||| || | ||||||| |||||||| | |||||||||||||
Sbjct: 256 gccttcttgtacctgtcaattgtagccttcacattgttgttgttggagtactcgtagagg 197
Query: 844 cggccgcggctggagaagacgacgagcgcgacctcggcgtcgcagagcaccgagagctcg 903
||||| |||||||||||||||| ||| || |||||||| |||||||| || ||||||||
Sbjct: 196 cggccacggctggagaagacgatgagagccacctcggcatcgcagaggacggagagctca 137
Query: 904 tacgccttcttgagcaggccgttgcggcgcttgcagaaggtcacctgccggctcgtcgtg 963
|||||||||||||| || ||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 136 tacgccttcttgagaagtccgttgcggcgcttgcagaaggtcacctggcggcttgtcgtg 77
Query: 964 ttctcgatgcgcttgatctcgatcttgcctctcccc 999
|||||||| | ||||||||| ||| |||| ||||||
Sbjct: 76 ttctcgatcctcttgatctcaatcctgcccctcccc 41
>emb|AL513004.1|CNS07EFJ Oryza sativa (japonica cultivar-group) chromosome 12 clone
OSJNBa0021D06, *** SEQUENCING IN PROGRESS ***
Length = 139671
Score = 212 bits (107), Expect = 3e-052
Identities = 161/179 (89%)
Strand = Plus / Minus
Query: 821 tgttgttggcgtactcgtagaggcggccgcggctggagaagacgacgagcgcgacctcgg 880
||||||||| |||||||||||||||||| |||||||||||||||| ||| || |||||||
Sbjct: 72145 tgttgttggagtactcgtagaggcggccacggctggagaagacgatgagagccacctcgg 72086
Query: 881 cgtcgcagagcaccgagagctcgtacgccttcttgagcaggccgttgcggcgcttgcaga 940
| |||||||| || |||||||| |||||||||||||| || |||||||||||||||||||
Sbjct: 72085 catcgcagaggacggagagctcatacgccttcttgagaagtccgttgcggcgcttgcaga 72026
Query: 941 aggtcacctgccggctcgtcgtgttctcgatgcgcttgatctcgatcttgcctctcccc 999
|||||||||| ||||| |||||||||||||| | ||||||||| ||| |||| ||||||
Sbjct: 72025 aggtcacctggcggcttgtcgtgttctcgatcctcttgatctcaatcctgcccctcccc 71967
>emb|BX000560.1|CNS08CE6 Oryza sativa chromosome 12, . BAC OSJNBa0021D06 of library OSJNBa from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 139684
Score = 212 bits (107), Expect = 3e-052
Identities = 161/179 (89%)
Strand = Plus / Plus
Query: 821 tgttgttggcgtactcgtagaggcggccgcggctggagaagacgacgagcgcgacctcgg 880
||||||||| |||||||||||||||||| |||||||||||||||| ||| || |||||||
Sbjct: 67533 tgttgttggagtactcgtagaggcggccacggctggagaagacgatgagagccacctcgg 67592
Query: 881 cgtcgcagagcaccgagagctcgtacgccttcttgagcaggccgttgcggcgcttgcaga 940
| |||||||| || |||||||| |||||||||||||| || |||||||||||||||||||
Sbjct: 67593 catcgcagaggacggagagctcatacgccttcttgagaagtccgttgcggcgcttgcaga 67652
Query: 941 aggtcacctgccggctcgtcgtgttctcgatgcgcttgatctcgatcttgcctctcccc 999
|||||||||| ||||| |||||||||||||| | ||||||||| ||| |||| ||||||
Sbjct: 67653 aggtcacctggcggcttgtcgtgttctcgatcctcttgatctcaatcctgcccctcccc 67711
>emb|BX000346.3|CNS08CDC Oryza sativa chromosome 12, . BAC OSJNBb0084C05 of library OSJNBb from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 117585
Score = 212 bits (107), Expect = 3e-052
Identities = 161/179 (89%)
Strand = Plus / Plus
Query: 821 tgttgttggcgtactcgtagaggcggccgcggctggagaagacgacgagcgcgacctcgg 880
||||||||| |||||||||||||||||| |||||||||||||||| ||| || |||||||
Sbjct: 12783 tgttgttggagtactcgtagaggcggccacggctggagaagacgatgagagccacctcgg 12842
Query: 881 cgtcgcagagcaccgagagctcgtacgccttcttgagcaggccgttgcggcgcttgcaga 940
| |||||||| || |||||||| |||||||||||||| || |||||||||||||||||||
Sbjct: 12843 catcgcagaggacggagagctcatacgccttcttgagaagtccgttgcggcgcttgcaga 12902
Query: 941 aggtcacctgccggctcgtcgtgttctcgatgcgcttgatctcgatcttgcctctcccc 999
|||||||||| ||||| |||||||||||||| | ||||||||| ||| |||| ||||||
Sbjct: 12903 aggtcacctggcggcttgtcgtgttctcgatcctcttgatctcaatcctgcccctcccc 12961
>emb|BX649218.2|CNS09SBX Oryza sativa chromosome 12, . BAC B1280F04 of chromosome 12 of cultivar
Nipponbare of ssp. japonica of Oryza sativa (rice),
complete sequence
Length = 160556
Score = 212 bits (107), Expect = 3e-052
Identities = 161/179 (89%)
Strand = Plus / Minus
Query: 821 tgttgttggcgtactcgtagaggcggccgcggctggagaagacgacgagcgcgacctcgg 880
||||||||| |||||||||||||||||| |||||||||||||||| ||| || |||||||
Sbjct: 138157 tgttgttggagtactcgtagaggcggccacggctggagaagacgatgagagccacctcgg 138098
Query: 881 cgtcgcagagcaccgagagctcgtacgccttcttgagcaggccgttgcggcgcttgcaga 940
| |||||||| || |||||||| |||||||||||||| || |||||||||||||||||||
Sbjct: 138097 catcgcagaggacggagagctcatacgccttcttgagaagtccgttgcggcgcttgcaga 138038
Query: 941 aggtcacctgccggctcgtcgtgttctcgatgcgcttgatctcgatcttgcctctcccc 999
|||||||||| ||||| |||||||||||||| | ||||||||| ||| |||| ||||||
Sbjct: 138037 aggtcacctggcggcttgtcgtgttctcgatcctcttgatctcaatcctgcccctcccc 137979
>ref|NT_107159.1| Oryza sativa (japonica cultivar-group)
Length = 480567
Score = 212 bits (107), Expect = 3e-052
Identities = 161/179 (89%)
Strand = Plus / Minus
Query: 821 tgttgttggcgtactcgtagaggcggccgcggctggagaagacgacgagcgcgacctcgg 880
||||||||| |||||||||||||||||| |||||||||||||||| ||| || |||||||
Sbjct: 261386 tgttgttggagtactcgtagaggcggccacggctggagaagacgatgagagccacctcgg 261327
Query: 881 cgtcgcagagcaccgagagctcgtacgccttcttgagcaggccgttgcggcgcttgcaga 940
| |||||||| || |||||||| |||||||||||||| || |||||||||||||||||||
Sbjct: 261326 catcgcagaggacggagagctcatacgccttcttgagaagtccgttgcggcgcttgcaga 261267
Query: 941 aggtcacctgccggctcgtcgtgttctcgatgcgcttgatctcgatcttgcctctcccc 999
|||||||||| ||||| |||||||||||||| | ||||||||| ||| |||| ||||||
Sbjct: 261266 aggtcacctggcggcttgtcgtgttctcgatcctcttgatctcaatcctgcccctcccc 261208
>gb|AACV01024177.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg024177, whole
genome shotgun sequence
Length = 23681
Score = 212 bits (107), Expect = 3e-052
Identities = 161/179 (89%)
Strand = Plus / Plus
Query: 821 tgttgttggcgtactcgtagaggcggccgcggctggagaagacgacgagcgcgacctcgg 880
||||||||| |||||||||||||||||| |||||||||||||||| ||| || |||||||
Sbjct: 21628 tgttgttggagtactcgtagaggcggccacggctggagaagacgatgagagccacctcgg 21687
Query: 881 cgtcgcagagcaccgagagctcgtacgccttcttgagcaggccgttgcggcgcttgcaga 940
| |||||||| || |||||||| |||||||||||||| || |||||||||||||||||||
Sbjct: 21688 catcgcagaggacggagagctcatacgccttcttgagaagtccgttgcggcgcttgcaga 21747
Query: 941 aggtcacctgccggctcgtcgtgttctcgatgcgcttgatctcgatcttgcctctcccc 999
|||||||||| ||||| |||||||||||||| | ||||||||| ||| |||| ||||||
Sbjct: 21748 aggtcacctggcggcttgtcgtgttctcgatcctcttgatctcaatcctgcccctcccc 21806
>gb|CH401272.1| Oryza sativa (japonica cultivar-group) chromosome 12 scaffold000109 genomic
scaffold, whole genome shotgun sequence
Length = 5753019
Score = 212 bits (107), Expect = 3e-052
Identities = 161/179 (89%)
Strand = Plus / Minus
Query: 821 tgttgttggcgtactcgtagaggcggccgcggctggagaagacgacgagcgcgacctcgg 880
||||||||| |||||||||||||||||| |||||||||||||||| ||| || |||||||
Sbjct: 5314696 tgttgttggagtactcgtagaggcggccacggctggagaagacgatgagagccacctcgg 5314637
Query: 881 cgtcgcagagcaccgagagctcgtacgccttcttgagcaggccgttgcggcgcttgcaga 940
| |||||||| || |||||||| |||||||||||||| || |||||||||||||||||||
Sbjct: 5314636 catcgcagaggacggagagctcatacgccttcttgagaagtccgttgcggcgcttgcaga 5314577
Query: 941 aggtcacctgccggctcgtcgtgttctcgatgcgcttgatctcgatcttgcctctcccc 999
|||||||||| ||||| |||||||||||||| | ||||||||| ||| |||| ||||||
Sbjct: 5314576 aggtcacctggcggcttgtcgtgttctcgatcctcttgatctcaatcctgcccctcccc 5314518
>gb|CM000149.1| Oryza sativa (japonica cultivar-group) chromosome 12, whole genome shotgun
sequence
Length = 23730396
Score = 212 bits (107), Expect = 3e-052
Identities = 161/179 (89%)
Strand = Plus / Minus
Query: 821 tgttgttggcgtactcgtagaggcggccgcggctggagaagacgacgagcgcgacctcgg 880
||||||||| |||||||||||||||||| |||||||||||||||| ||| || |||||||
Sbjct: 5314696 tgttgttggagtactcgtagaggcggccacggctggagaagacgatgagagccacctcgg 5314637
Query: 881 cgtcgcagagcaccgagagctcgtacgccttcttgagcaggccgttgcggcgcttgcaga 940
| |||||||| || |||||||| |||||||||||||| || |||||||||||||||||||
Sbjct: 5314636 catcgcagaggacggagagctcatacgccttcttgagaagtccgttgcggcgcttgcaga 5314577
Query: 941 aggtcacctgccggctcgtcgtgttctcgatgcgcttgatctcgatcttgcctctcccc 999
|||||||||| ||||| |||||||||||||| | ||||||||| ||| |||| ||||||
Sbjct: 5314576 aggtcacctggcggcttgtcgtgttctcgatcctcttgatctcaatcctgcccctcccc 5314518
Score = 54.0 bits (27), Expect = 2e-004
Identities = 84/103 (81%)
Strand = Plus / Plus
Query: 855 ggagaagacgacgagcgcgacctcggcgtcgcagagcaccgagagctcgtacgccttctt 914
||||||||||| | ||||| ||| |||||||||| || | || ||||| ||||||||
Sbjct: 15774435 ggagaagacgatggcggcgacgtcgacgtcgcagaggacggcgatctcgtgggccttctt 15774494
Query: 915 gagcaggccgttgcggcgcttgcagaaggtcacctgccggctc 957
|||||| || || |||||| ||||||||||||||||||||
Sbjct: 15774495 gagcagccccggccgccgcttggagaaggtcacctgccggctc 15774537
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
sequence
Length = 27566993
Score = 212 bits (107), Expect = 3e-052
Identities = 161/179 (89%)
Strand = Plus / Minus
Query: 821 tgttgttggcgtactcgtagaggcggccgcggctggagaagacgacgagcgcgacctcgg 880
||||||||| |||||||||||||||||| |||||||||||||||| ||| || |||||||
Sbjct: 5585352 tgttgttggagtactcgtagaggcggccacggctggagaagacgatgagagccacctcgg 5585293
Query: 881 cgtcgcagagcaccgagagctcgtacgccttcttgagcaggccgttgcggcgcttgcaga 940
| |||||||| || |||||||| |||||||||||||| || |||||||||||||||||||
Sbjct: 5585292 catcgcagaggacggagagctcatacgccttcttgagaagtccgttgcggcgcttgcaga 5585233
Query: 941 aggtcacctgccggctcgtcgtgttctcgatgcgcttgatctcgatcttgcctctcccc 999
|||||||||| ||||| |||||||||||||| | ||||||||| ||| |||| ||||||
Sbjct: 5585232 aggtcacctggcggcttgtcgtgttctcgatcctcttgatctcaatcctgcccctcccc 5585174
Score = 54.0 bits (27), Expect = 2e-004
Identities = 84/103 (81%)
Strand = Plus / Plus
Query: 855 ggagaagacgacgagcgcgacctcggcgtcgcagagcaccgagagctcgtacgccttctt 914
||||||||||| | ||||| ||| |||||||||| || | || ||||| ||||||||
Sbjct: 19156000 ggagaagacgatggcggcgacgtcgacgtcgcagaggacggcgatctcgtgggccttctt 19156059
Query: 915 gagcaggccgttgcggcgcttgcagaaggtcacctgccggctc 957
|||||| || || |||||| ||||||||||||||||||||
Sbjct: 19156060 gagcagccccggccgccgcttggagaaggtcacctgccggctc 19156102
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
Length = 27492551
Score = 212 bits (107), Expect = 3e-052
Identities = 161/179 (89%)
Strand = Plus / Minus
Query: 821 tgttgttggcgtactcgtagaggcggccgcggctggagaagacgacgagcgcgacctcgg 880
||||||||| |||||||||||||||||| |||||||||||||||| ||| || |||||||
Sbjct: 5585341 tgttgttggagtactcgtagaggcggccacggctggagaagacgatgagagccacctcgg 5585282
Query: 881 cgtcgcagagcaccgagagctcgtacgccttcttgagcaggccgttgcggcgcttgcaga 940
| |||||||| || |||||||| |||||||||||||| || |||||||||||||||||||
Sbjct: 5585281 catcgcagaggacggagagctcatacgccttcttgagaagtccgttgcggcgcttgcaga 5585222
Query: 941 aggtcacctgccggctcgtcgtgttctcgatgcgcttgatctcgatcttgcctctcccc 999
|||||||||| ||||| |||||||||||||| | ||||||||| ||| |||| ||||||
Sbjct: 5585221 aggtcacctggcggcttgtcgtgttctcgatcctcttgatctcaatcctgcccctcccc 5585163
Score = 54.0 bits (27), Expect = 2e-004
Identities = 84/103 (81%)
Strand = Plus / Plus
Query: 855 ggagaagacgacgagcgcgacctcggcgtcgcagagcaccgagagctcgtacgccttctt 914
||||||||||| | ||||| ||| |||||||||| || | || ||||| ||||||||
Sbjct: 19082227 ggagaagacgatggcggcgacgtcgacgtcgcagaggacggcgatctcgtgggccttctt 19082286
Query: 915 gagcaggccgttgcggcgcttgcagaaggtcacctgccggctc 957
|||||| || || |||||| ||||||||||||||||||||
Sbjct: 19082287 gagcagccccggccgccgcttggagaaggtcacctgccggctc 19082329
>gb|CB655394.1|CB655394 OSJNEc08M08.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc08M08 3', mRNA sequence
Length = 601
Score = 180 bits (91), Expect = 1e-042
Identities = 136/151 (90%)
Strand = Plus / Minus
Query: 827 tggcgtactcgtagaggcggccgcggctggagaagacgacgagcgcgacctcggcgtcgc 886
||||| |||||||||||||||||||| ||||||||||| ||| ||||||||||||||||
Sbjct: 389 tggcgaactcgtagaggcggccgcggggggagaagacgatgagggcgacctcggcgtcgc 330
Query: 887 agagcaccgagagctcgtacgccttcttgagcaggccgttgcggcgcttgcagaaggtca 946
|||| || ||||||||| ||||||||||||| ||||| || ||||||||| |||||||||
Sbjct: 329 agaggacggagagctcgaacgccttcttgaggaggccattccggcgcttggagaaggtca 270
Query: 947 cctgccggctcgtcgtgttctcgatgcgctt 977
||||||||||||||| |||||| || |||||
Sbjct: 269 cctgccggctcgtcgggttctcaatccgctt 239
>gb|CB658195.1|CB658195 OSJNEc14A21.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc14A21 5', mRNA sequence
Length = 764
Score = 180 bits (91), Expect = 1e-042
Identities = 136/151 (90%)
Strand = Plus / Minus
Query: 827 tggcgtactcgtagaggcggccgcggctggagaagacgacgagcgcgacctcggcgtcgc 886
||||| |||||||||||||||||||| ||||||||||| ||| ||||||||||||||||
Sbjct: 432 tggcgaactcgtagaggcggccgcggggggagaagacgatgagggcgacctcggcgtcgc 373
Query: 887 agagcaccgagagctcgtacgccttcttgagcaggccgttgcggcgcttgcagaaggtca 946
|||| || ||||||||| ||||||||||||| ||||| || ||||||||| |||||||||
Sbjct: 372 agaggacggagagctcgaacgccttcttgaggaggccattccggcgcttggagaaggtca 313
Query: 947 cctgccggctcgtcgtgttctcgatgcgctt 977
||||||||||||||| |||||| || |||||
Sbjct: 312 cctgccggctcgtcgggttctcaatccgctt 282
>gb|CB659436.1|CB659436 OSJNEc16G22.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc16G22 5', mRNA sequence
Length = 804
Score = 180 bits (91), Expect = 1e-042
Identities = 136/151 (90%)
Strand = Plus / Minus
Query: 827 tggcgtactcgtagaggcggccgcggctggagaagacgacgagcgcgacctcggcgtcgc 886
||||| |||||||||||||||||||| ||||||||||| ||| ||||||||||||||||
Sbjct: 430 tggcgaactcgtagaggcggccgcggggggagaagacgatgagggcgacctcggcgtcgc 371
Query: 887 agagcaccgagagctcgtacgccttcttgagcaggccgttgcggcgcttgcagaaggtca 946
|||| || ||||||||| ||||||||||||| ||||| || ||||||||| |||||||||
Sbjct: 370 agaggacggagagctcgaacgccttcttgaggaggccattccggcgcttggagaaggtca 311
Query: 947 cctgccggctcgtcgtgttctcgatgcgctt 977
||||||||||||||| |||||| || |||||
Sbjct: 310 cctgccggctcgtcgggttctcaatccgctt 280
>gb|CF332627.1|CF332627 JMT--01-D10.b1 AtJMT-overexpressing transgenic rice plasmid cDNA
library (JMT) Oryza sativa (japonica cultivar-group)
cDNA clone JMT--01-D10, mRNA sequence
Length = 583
Score = 180 bits (91), Expect = 1e-042
Identities = 136/151 (90%)
Strand = Plus / Minus
Query: 827 tggcgtactcgtagaggcggccgcggctggagaagacgacgagcgcgacctcggcgtcgc 886
||||| |||||||||||||||||||| ||||||||||| ||| ||||||||||||||||
Sbjct: 475 tggcgaactcgtagaggcggccgcggggggagaagacgatgagggcgacctcggcgtcgc 416
Query: 887 agagcaccgagagctcgtacgccttcttgagcaggccgttgcggcgcttgcagaaggtca 946
|||| || ||||||||| ||||||||||||| ||||| || ||||||||| |||||||||
Sbjct: 415 agaggacggagagctcgaacgccttcttgaggaggccattccggcgcttggagaaggtca 356
Query: 947 cctgccggctcgtcgtgttctcgatgcgctt 977
||||||||||||||| |||||| || |||||
Sbjct: 355 cctgccggctcgtcgggttctcaatccgctt 325
>gb|CF334759.1|CF334759 JMT--04-C18.b1 AtJMT-overexpressing transgenic rice plasmid cDNA
library (JMT) Oryza sativa (japonica cultivar-group)
cDNA clone JMT--04-C18, mRNA sequence
Length = 565
Score = 180 bits (91), Expect = 1e-042
Identities = 136/151 (90%)
Strand = Plus / Minus
Query: 827 tggcgtactcgtagaggcggccgcggctggagaagacgacgagcgcgacctcggcgtcgc 886
||||| |||||||||||||||||||| ||||||||||| ||| ||||||||||||||||
Sbjct: 458 tggcgaactcgtagaggcggccgcggggggagaagacgatgagggcgacctcggcgtcgc 399
Query: 887 agagcaccgagagctcgtacgccttcttgagcaggccgttgcggcgcttgcagaaggtca 946
|||| || ||||||||| ||||||||||||| ||||| || ||||||||| |||||||||
Sbjct: 398 agaggacggagagctcgaacgccttcttgaggaggccattccggcgcttggagaaggtca 339
Query: 947 cctgccggctcgtcgtgttctcgatgcgctt 977
||||||||||||||| |||||| || |||||
Sbjct: 338 cctgccggctcgtcgggttctcaatccgctt 308
>dbj|AK070135.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023043P08, full
insert sequence
Length = 1293
Score = 180 bits (91), Expect = 1e-042
Identities = 136/151 (90%)
Strand = Plus / Minus
Query: 827 tggcgtactcgtagaggcggccgcggctggagaagacgacgagcgcgacctcggcgtcgc 886
||||| |||||||||||||||||||| ||||||||||| ||| ||||||||||||||||
Sbjct: 455 tggcgaactcgtagaggcggccgcggggggagaagacgatgagggcgacctcggcgtcgc 396
Query: 887 agagcaccgagagctcgtacgccttcttgagcaggccgttgcggcgcttgcagaaggtca 946
|||| || ||||||||| ||||||||||||| ||||| || ||||||||| |||||||||
Sbjct: 395 agaggacggagagctcgaacgccttcttgaggaggccattccggcgcttggagaaggtca 336
Query: 947 cctgccggctcgtcgtgttctcgatgcgctt 977
||||||||||||||| |||||| || |||||
Sbjct: 335 cctgccggctcgtcgggttctcaatccgctt 305
>gb|AY345224.1| Oryza sativa (japonica cultivar-group) transcription factor MADS56
mRNA, complete cds
Length = 1311
Score = 180 bits (91), Expect = 1e-042
Identities = 136/151 (90%)
Strand = Plus / Minus
Query: 827 tggcgtactcgtagaggcggccgcggctggagaagacgacgagcgcgacctcggcgtcgc 886
||||| |||||||||||||||||||| ||||||||||| ||| ||||||||||||||||
Sbjct: 459 tggcgaactcgtagaggcggccgcggggggagaagacgatgagggcgacctcggcgtcgc 400
Query: 887 agagcaccgagagctcgtacgccttcttgagcaggccgttgcggcgcttgcagaaggtca 946
|||| || ||||||||| ||||||||||||| ||||| || ||||||||| |||||||||
Sbjct: 399 agaggacggagagctcgaacgccttcttgaggaggccattccggcgcttggagaaggtca 340
Query: 947 cctgccggctcgtcgtgttctcgatgcgctt 977
||||||||||||||| |||||| || |||||
Sbjct: 339 cctgccggctcgtcgggttctcaatccgctt 309
>gb|AC092697.6| Oryza sativa chromosome 10 BAC OSJNBb0060I05 genomic sequence, complete
sequence
Length = 105841
Score = 180 bits (91), Expect = 1e-042
Identities = 136/151 (90%)
Strand = Plus / Minus
Query: 827 tggcgtactcgtagaggcggccgcggctggagaagacgacgagcgcgacctcggcgtcgc 886
||||| |||||||||||||||||||| ||||||||||| ||| ||||||||||||||||
Sbjct: 60082 tggcgaactcgtagaggcggccgcggggggagaagacgatgagggcgacctcggcgtcgc 60023
Query: 887 agagcaccgagagctcgtacgccttcttgagcaggccgttgcggcgcttgcagaaggtca 946
|||| || ||||||||| ||||||||||||| ||||| || ||||||||| |||||||||
Sbjct: 60022 agaggacggagagctcgaacgccttcttgaggaggccattccggcgcttggagaaggtca 59963
Query: 947 cctgccggctcgtcgtgttctcgatgcgctt 977
||||||||||||||| |||||| || |||||
Sbjct: 59962 cctgccggctcgtcgggttctcaatccgctt 59932
>gb|AY551919.1| Oryza sativa (japonica cultivar-group) MADS-box protein RMADS214
mRNA, complete cds
Length = 1007
Score = 180 bits (91), Expect = 1e-042
Identities = 136/151 (90%)
Strand = Plus / Minus
Query: 827 tggcgtactcgtagaggcggccgcggctggagaagacgacgagcgcgacctcggcgtcgc 886
||||| |||||||||||||||||||| ||||||||||| ||| ||||||||||||||||
Sbjct: 292 tggcgaactcgtagaggcggccgcggggggagaagacgatgagggcgacctcggcgtcgc 233
Query: 887 agagcaccgagagctcgtacgccttcttgagcaggccgttgcggcgcttgcagaaggtca 946
|||| || ||||||||| ||||||||||||| ||||| || ||||||||| |||||||||
Sbjct: 232 agaggacggagagctcgaacgccttcttgaggaggccattccggcgcttggagaaggtca 173
Query: 947 cctgccggctcgtcgtgttctcgatgcgctt 977
||||||||||||||| |||||| || |||||
Sbjct: 172 cctgccggctcgtcgggttctcaatccgctt 142
>gb|AACV01022000.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg022000, whole
genome shotgun sequence
Length = 49985
Score = 180 bits (91), Expect = 1e-042
Identities = 136/151 (90%)
Strand = Plus / Minus
Query: 827 tggcgtactcgtagaggcggccgcggctggagaagacgacgagcgcgacctcggcgtcgc 886
||||| |||||||||||||||||||| ||||||||||| ||| ||||||||||||||||
Sbjct: 11970 tggcgaactcgtagaggcggccgcggggggagaagacgatgagggcgacctcggcgtcgc 11911
Query: 887 agagcaccgagagctcgtacgccttcttgagcaggccgttgcggcgcttgcagaaggtca 946
|||| || ||||||||| ||||||||||||| ||||| || ||||||||| |||||||||
Sbjct: 11910 agaggacggagagctcgaacgccttcttgaggaggccattccggcgcttggagaaggtca 11851
Query: 947 cctgccggctcgtcgtgttctcgatgcgctt 977
||||||||||||||| |||||| || |||||
Sbjct: 11850 cctgccggctcgtcgggttctcaatccgctt 11820
>ref|NM_197541.1| Oryza sativa (japonica cultivar-group) putative transcription
factor (OSJNBb0060I05.3), mRNA
Length = 941
Score = 180 bits (91), Expect = 1e-042
Identities = 136/151 (90%)
Strand = Plus / Minus
Query: 827 tggcgtactcgtagaggcggccgcggctggagaagacgacgagcgcgacctcggcgtcgc 886
||||| |||||||||||||||||||| ||||||||||| ||| ||||||||||||||||
Sbjct: 414 tggcgaactcgtagaggcggccgcggggggagaagacgatgagggcgacctcggcgtcgc 355
Query: 887 agagcaccgagagctcgtacgccttcttgagcaggccgttgcggcgcttgcagaaggtca 946
|||| || ||||||||| ||||||||||||| ||||| || ||||||||| |||||||||
Sbjct: 354 agaggacggagagctcgaacgccttcttgaggaggccattccggcgcttggagaaggtca 295
Query: 947 cctgccggctcgtcgtgttctcgatgcgctt 977
||||||||||||||| |||||| || |||||
Sbjct: 294 cctgccggctcgtcgggttctcaatccgctt 264
>ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chromosome 10
Length = 4609300
Score = 180 bits (91), Expect = 1e-042
Identities = 136/151 (90%)
Strand = Plus / Minus
Query: 827 tggcgtactcgtagaggcggccgcggctggagaagacgacgagcgcgacctcggcgtcgc 886
||||| |||||||||||||||||||| ||||||||||| ||| ||||||||||||||||
Sbjct: 2266774 tggcgaactcgtagaggcggccgcggggggagaagacgatgagggcgacctcggcgtcgc 2266715
Query: 887 agagcaccgagagctcgtacgccttcttgagcaggccgttgcggcgcttgcagaaggtca 946
|||| || ||||||||| ||||||||||||| ||||| || ||||||||| |||||||||
Sbjct: 2266714 agaggacggagagctcgaacgccttcttgaggaggccattccggcgcttggagaaggtca 2266655
Query: 947 cctgccggctcgtcgtgttctcgatgcgctt 977
||||||||||||||| |||||| || |||||
Sbjct: 2266654 cctgccggctcgtcgggttctcaatccgctt 2266624
Score = 46.1 bits (23), Expect = 0.046
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1023 cgtcggcgccgccgccacctgctcctt 1049
|||||||||||||||||||| ||||||
Sbjct: 580862 cgtcggcgccgccgccacctcctcctt 580888
>gb|CH401254.1| Oryza sativa (japonica cultivar-group) chromosome 10 scaffold000091 genomic
scaffold, whole genome shotgun sequence
Length = 10615099
Score = 180 bits (91), Expect = 1e-042
Identities = 136/151 (90%)
Strand = Plus / Minus
Query: 827 tggcgtactcgtagaggcggccgcggctggagaagacgacgagcgcgacctcggcgtcgc 886
||||| |||||||||||||||||||| ||||||||||| ||| ||||||||||||||||
Sbjct: 8307060 tggcgaactcgtagaggcggccgcggggggagaagacgatgagggcgacctcggcgtcgc 8307001
Query: 887 agagcaccgagagctcgtacgccttcttgagcaggccgttgcggcgcttgcagaaggtca 946
|||| || ||||||||| ||||||||||||| ||||| || ||||||||| |||||||||
Sbjct: 8307000 agaggacggagagctcgaacgccttcttgaggaggccattccggcgcttggagaaggtca 8306941
Query: 947 cctgccggctcgtcgtgttctcgatgcgctt 977
||||||||||||||| |||||| || |||||
Sbjct: 8306940 cctgccggctcgtcgggttctcaatccgctt 8306910
>gb|CM000147.1| Oryza sativa (japonica cultivar-group) chromosome 10, whole genome shotgun
sequence
Length = 21480893
Score = 180 bits (91), Expect = 1e-042
Identities = 136/151 (90%)
Strand = Plus / Minus
Query: 827 tggcgtactcgtagaggcggccgcggctggagaagacgacgagcgcgacctcggcgtcgc 886
||||| |||||||||||||||||||| ||||||||||| ||| ||||||||||||||||
Sbjct: 19172854 tggcgaactcgtagaggcggccgcggggggagaagacgatgagggcgacctcggcgtcgc 19172795
Query: 887 agagcaccgagagctcgtacgccttcttgagcaggccgttgcggcgcttgcagaaggtca 946
|||| || ||||||||| ||||||||||||| ||||| || ||||||||| |||||||||
Sbjct: 19172794 agaggacggagagctcgaacgccttcttgaggaggccattccggcgcttggagaaggtca 19172735
Query: 947 cctgccggctcgtcgtgttctcgatgcgctt 977
||||||||||||||| |||||| || |||||
Sbjct: 19172734 cctgccggctcgtcgggttctcaatccgctt 19172704
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
sequence
Length = 22685906
Score = 180 bits (91), Expect = 1e-042
Identities = 136/151 (90%)
Strand = Plus / Minus
Query: 827 tggcgtactcgtagaggcggccgcggctggagaagacgacgagcgcgacctcggcgtcgc 886
||||| |||||||||||||||||||| ||||||||||| ||| ||||||||||||||||
Sbjct: 20344580 tggcgaactcgtagaggcggccgcggggggagaagacgatgagggcgacctcggcgtcgc 20344521
Query: 887 agagcaccgagagctcgtacgccttcttgagcaggccgttgcggcgcttgcagaaggtca 946
|||| || ||||||||| ||||||||||||| ||||| || ||||||||| |||||||||
Sbjct: 20344520 agaggacggagagctcgaacgccttcttgaggaggccattccggcgcttggagaaggtca 20344461
Query: 947 cctgccggctcgtcgtgttctcgatgcgctt 977
||||||||||||||| |||||| || |||||
Sbjct: 20344460 cctgccggctcgtcgggttctcaatccgctt 20344430
Score = 46.1 bits (23), Expect = 0.046
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1023 cgtcggcgccgccgccacctgctcctt 1049
|||||||||||||||||||| ||||||
Sbjct: 18659068 cgtcggcgccgccgccacctcctcctt 18659094
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
Length = 22698374
Score = 180 bits (91), Expect = 1e-042
Identities = 136/151 (90%)
Strand = Plus / Minus
Query: 827 tggcgtactcgtagaggcggccgcggctggagaagacgacgagcgcgacctcggcgtcgc 886
||||| |||||||||||||||||||| ||||||||||| ||| ||||||||||||||||
Sbjct: 20355852 tggcgaactcgtagaggcggccgcggggggagaagacgatgagggcgacctcggcgtcgc 20355793
Query: 887 agagcaccgagagctcgtacgccttcttgagcaggccgttgcggcgcttgcagaaggtca 946
|||| || ||||||||| ||||||||||||| ||||| || ||||||||| |||||||||
Sbjct: 20355792 agaggacggagagctcgaacgccttcttgaggaggccattccggcgcttggagaaggtca 20355733
Query: 947 cctgccggctcgtcgtgttctcgatgcgctt 977
||||||||||||||| |||||| || |||||
Sbjct: 20355732 cctgccggctcgtcgggttctcaatccgctt 20355702
Score = 46.1 bits (23), Expect = 0.046
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1023 cgtcggcgccgccgccacctgctcctt 1049
|||||||||||||||||||| ||||||
Sbjct: 18669921 cgtcggcgccgccgccacctcctcctt 18669947
>gb|AACV01011125.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg011125, whole
genome shotgun sequence
Length = 25013
Score = 165 bits (83), Expect = 7e-038
Identities = 119/131 (90%)
Strand = Plus / Minus
Query: 820 ctgttgttggcgtactcgtagaggcggccgcggctggagaagacgacgagcgcgacctcg 879
|||||||||| ||||||||||||||||||||||||||||||||||| ||| || ||||||
Sbjct: 6803 ctgttgttggagtactcgtagaggcggccgcggctggagaagacgatgagggcaacctcg 6744
Query: 880 gcgtcgcagagcaccgagagctcgtacgccttcttgagcaggccgttgcggcgcttgcag 939
|| |||||||||| |||||||| |||||||||||||| || ||||||| ||||||||||
Sbjct: 6743 gcatcgcagagcatggagagctcatacgccttcttgagtagcccgttgcagcgcttgcag 6684
Query: 940 aaggtcacctg 950
||||| |||||
Sbjct: 6683 aaggtgacctg 6673
Score = 65.9 bits (33), Expect = 5e-008
Identities = 60/69 (86%)
Strand = Plus / Minus
Query: 738 ctgggcattgacttctgcaactgtgccagagttggaggagtcactgttggccttcttgta 797
||||||||||| ||||||||||| | | ||||||| |||||||||||| ||||||||
Sbjct: 12830 ctgggcattgatctctgcaactgtactggtattggaggtgtcactgttggctttcttgta 12771
Query: 798 cctctcaat 806
|||||||||
Sbjct: 12770 cctctcaat 12762
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,998,825
Number of Sequences: 438736
Number of extensions: 1998825
Number of successful extensions: 20601
Number of sequences better than 0.5: 362
Number of HSP's better than 0.5 without gapping: 426
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 15133
Number of HSP's gapped (non-prelim): 5412
length of query: 1245
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1224
effective length of database: 2,791,206,460
effective search space: 3416436707040
effective search space used: 3416436707040
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)