BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3802552.2.1
(252 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB652644.1|CB652644 OSJNEc02N19.f OSJNEc Oryza sativa (j... 228 1e-057
gb|CB652646.1|CB652646 OSJNEc02N20.f OSJNEc Oryza sativa (j... 228 1e-057
gb|CB652671.1|CB652671 OSJNEc02O19.f OSJNEc Oryza sativa (j... 228 1e-057
gb|CB655945.1|CB655945 OSJNEc09M07.f OSJNEc Oryza sativa (j... 228 1e-057
gb|CB658948.1|CB658948 OSJNEc15G24.f OSJNEc Oryza sativa (j... 228 1e-057
dbj|AB000801.2| Oryza sativa mRNA for chalcone synthase, co... 228 1e-057
dbj|AB058397.1| Oryza sativa (japonica cultivar-group) CHS ... 228 1e-057
gb|AC136925.1| Oryza sativa (japonica cultivar-group) chrom... 228 1e-057
gb|AC134256.4| Oryza sativa (japonica cultivar-group), comp... 228 1e-057
ref|NT_107091.1| Oryza sativa (japonica cultivar-group), co... 228 1e-057
gb|AACV01023282.1| Oryza sativa (japonica cultivar-group) c... 228 1e-057
gb|CH401264.1| Oryza sativa (japonica cultivar-group) chrom... 228 1e-057
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 228 1e-057
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 228 1e-057
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 228 1e-057
gb|CB674631.1|CB674631 OSJNEe09M08.f OSJNEe Oryza sativa (j... 220 3e-055
dbj|AK067810.1| Oryza sativa (japonica cultivar-group) cDNA... 220 3e-055
gb|AU101871.1|AU101871 AU101871 Rice green shoot Oryza sati... 218 1e-054
gb|CB653703.1|CB653703 OSJNEc04P21.f OSJNEc Oryza sativa (j... 212 6e-053
gb|CB680849.1|CB680849 OSJNEf06E21.f OSJNEf Oryza sativa (j... 206 4e-051
dbj|AP004002.3| Oryza sativa (japonica cultivar-group) geno... 202 6e-050
gb|AACV01015437.1| Oryza sativa (japonica cultivar-group) c... 202 6e-050
ref|NM_186515.1| Oryza sativa (japonica cultivar-group), mRNA 202 6e-050
ref|NT_079879.2| Oryza sativa (japonica cultivar-group) 202 6e-050
gb|CH401221.1| Oryza sativa (japonica cultivar-group) chrom... 202 6e-050
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 202 6e-050
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 202 6e-050
gb|CB659248.1|CB659248 OSJNEc16B06.f OSJNEc Oryza sativa (j... 196 4e-048
gb|CB643204.1|CB643204 OSJNEb03M07.f OSJNEb Oryza sativa (j... 167 3e-039
gb|CB656852.1|CB656852 OSJNEc11K09.f OSJNEc Oryza sativa (j... 159 8e-037
gb|CB655646.1|CB655646 OSJNEc09E07.f OSJNEc Oryza sativa (j... 155 1e-035
gb|CB650191.1|CB650191 OSJNEb14I06.f OSJNEb Oryza sativa (j... 143 5e-032
gb|CB642954.1|CB642954 OSJNEb03G07.f OSJNEb Oryza sativa (j... 139 8e-031
gb|CB645689.1|CB645689 OSJNEb07J04.f OSJNEb Oryza sativa (j... 137 3e-030
gb|CB648534.1|CB648534 OSJNEb11P09.f OSJNEb Oryza sativa (j... 137 3e-030
gb|CB674572.1|CB674572 OSJNEe09K22.f OSJNEe Oryza sativa (j... 137 3e-030
gb|CB644310.1|CB644310 OSJNEb05H09.f OSJNEb Oryza sativa (j... 115 1e-023
gb|CB646507.1|CB646507 OSJNEb09A17.f OSJNEb Oryza sativa (j... 115 1e-023
gb|CB649065.1|CB649065 OSJNEb12M18.f OSJNEb Oryza sativa (j... 115 1e-023
gb|CB652860.1|CB652860 OSJNEc03E22.f OSJNEc Oryza sativa (j... 115 1e-023
gb|CB653142.1|CB653142 OSJNEc03O04.f OSJNEc Oryza sativa (j... 115 1e-023
gb|CB677917.1|CB677917 OSJNEe15F21.f OSJNEe Oryza sativa (j... 115 1e-023
gb|CB678203.1|CB678203 OSJNEe15N18.f OSJNEe Oryza sativa (j... 115 1e-023
gb|CB653359.1|CB653359 OSJNEc04F05.f OSJNEc Oryza sativa (j... 107 3e-021
gb|CB684667.1|CB684667 OSJNEf14G16.f OSJNEf Oryza sativa (j... 107 3e-021
dbj|AP003278.5| Oryza sativa (japonica cultivar-group) geno... 76 1e-011
gb|AACV01001773.1| Oryza sativa (japonica cultivar-group) c... 76 1e-011
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 76 1e-011
ref|NM_192650.1| Oryza sativa (japonica cultivar-group), p... 76 1e-011
ref|NT_079926.2| Oryza sativa (japonica cultivar-group) 76 1e-011
dbj|AP003330.4| Oryza sativa (japonica cultivar-group) geno... 76 1e-011
gb|CH401166.1| Oryza sativa (japonica cultivar-group) chrom... 76 1e-011
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 76 1e-011
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 76 1e-011
dbj|AK110924.1| Oryza sativa (japonica cultivar-group) cDNA... 68 2e-009
dbj|AP003995.2| Oryza sativa (japonica cultivar-group) geno... 68 2e-009
dbj|AP005177.4| Oryza sativa (japonica cultivar-group) geno... 68 2e-009
ref|XM_478252.1| Oryza sativa (japonica cultivar-group), mRNA 68 2e-009
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 68 2e-009
gb|AQ510248.1|AQ510248 nbxb0095E07r CUGI Rice BAC Library O... 62 1e-007
gb|AC135568.3| Oryza sativa (japonica cultivar-group) chrom... 62 1e-007
gb|AACV01022357.1| Oryza sativa (japonica cultivar-group) c... 62 1e-007
gb|CH401257.1| Oryza sativa (japonica cultivar-group) chrom... 62 1e-007
emb|AL606593.1|OSJN00026 Oryza sativa (japonica cultivar-gr... 60 6e-007
dbj|AK100989.1| Oryza sativa (japonica cultivar-group) cDNA... 60 6e-007
ref|XM_470964.1| Oryza sativa (japonica cultivar-group), p... 60 6e-007
ref|NT_107194.1| Oryza sativa (japonica cultivar-group) 60 6e-007
emb|AL662935.3|OSJN00146 Oryza sativa genomic DNA, chromoso... 60 6e-007
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 60 6e-007
gb|AQ857421.1|AQ857421 nbeb0005D10f CUGI Rice BAC Library (... 58 2e-006
dbj|AP004573.3| Oryza sativa (japonica cultivar-group) geno... 58 2e-006
dbj|AP005169.3| Oryza sativa (japonica cultivar-group) geno... 58 2e-006
gb|AACV01016412.1| Oryza sativa (japonica cultivar-group) c... 58 2e-006
gb|AACV01016413.1| Oryza sativa (japonica cultivar-group) c... 58 2e-006
gb|AACV01023274.1| Oryza sativa (japonica cultivar-group) c... 58 2e-006
ref|XM_478473.1| Oryza sativa (japonica cultivar-group), mRNA 58 2e-006
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 58 2e-006
gb|AACV01009230.1| Oryza sativa (japonica cultivar-group) c... 56 9e-006
gb|AACV01023276.1| Oryza sativa (japonica cultivar-group) c... 56 9e-006
ref|XM_471722.1| Oryza sativa (japonica cultivar-group), p... 56 9e-006
ref|NT_079856.2| Oryza sativa (japonica cultivar-group) 56 9e-006
gb|CH401189.1| Oryza sativa (japonica cultivar-group) chrom... 56 9e-006
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 56 9e-006
emb|AL731609.2|OSJN00259 Oryza sativa genomic DNA, chromoso... 56 9e-006
dbj|AP003797.2| Oryza sativa (japonica cultivar-group) geno... 54 4e-005
dbj|AK109558.1| Oryza sativa (japonica cultivar-group) cDNA... 54 4e-005
dbj|AP005172.4| Oryza sativa (japonica cultivar-group) geno... 54 4e-005
gb|AACV01016302.1| Oryza sativa (japonica cultivar-group) c... 54 4e-005
ref|XM_477391.1| Oryza sativa (japonica cultivar-group), mRNA 54 4e-005
gb|AC068924.11| Oryza sativa chromosome 10 BAC OSJNBa0026L1... 52 1e-004
gb|AACV01015726.1| Oryza sativa (japonica cultivar-group) c... 52 1e-004
gb|AACV01021932.1| Oryza sativa (japonica cultivar-group) c... 52 1e-004
ref|NM_197329.1| Oryza sativa (japonica cultivar-group) put... 52 1e-004
ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chr... 52 1e-004
gb|CH401254.1| Oryza sativa (japonica cultivar-group) chrom... 52 1e-004
gb|CH401222.1| Oryza sativa (japonica cultivar-group) chrom... 52 1e-004
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 52 1e-004
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 52 1e-004
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 52 1e-004
gb|AQ258123.1|AQ258123 nbxb0019B18f CUGI Rice BAC Library O... 50 6e-004
gb|CB680825.1|CB680825 OSJNEf06D22.f OSJNEf Oryza sativa (j... 48 0.002
gb|CB683413.1|CB683413 OSJNEf11M03.f OSJNEf Oryza sativa (j... 48 0.002
dbj|AK061132.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.002
gb|AC133291.2| Oryza sativa (japonica cultivar-group) chrom... 48 0.002
gb|AACV01023422.1| Oryza sativa (japonica cultivar-group) c... 48 0.002
dbj|AP004795.1| Oryza sativa (japonica cultivar-group) chro... 44 0.034
ref|NT_107238.1| Oryza sativa (japonica cultivar-group) 44 0.034
dbj|AP004818.3| Oryza sativa (japonica cultivar-group) geno... 44 0.034
gb|AACV01014234.1| Oryza sativa (japonica cultivar-group) c... 44 0.034
gb|AACV01023273.1| Oryza sativa (japonica cultivar-group) c... 44 0.034
gb|AACV01025830.1| Oryza sativa (japonica cultivar-group) C... 44 0.034
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.034
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.034
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 44 0.034
gb|CF323134.1|CF323134 HDN--03-A07.g1 OsHDAC1-overexpressin... 42 0.14
dbj|AK072874.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.14
gb|AACV01010657.1| Oryza sativa (japonica cultivar-group) c... 42 0.14
gb|AACV01028576.1| Oryza sativa (japonica cultivar-group) C... 42 0.14
ref|NT_107201.1| Oryza sativa (japonica cultivar-group) 42 0.14
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.14
emb|AL606668.2|OSJN00083 Oryza sativa genomic DNA, chromoso... 42 0.14
>gb|CB652644.1|CB652644 OSJNEc02N19.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc02N19 5', mRNA sequence
Length = 670
Score = 228 bits (115), Expect = 1e-057
Identities = 207/238 (86%)
Strand = Plus / Plus
Query: 12 gtaccagcaggggtggttcgcgggcggcacggtgctgcgcgtggccaaggacctcgcgga 71
||||||||||||||| ||||| |||||||||||||| ||||| |||||||||||||| ||
Sbjct: 374 gtaccagcaggggtgcttcgccggcggcacggtgctccgcgtcgccaaggacctcgccga 433
Query: 72 gaacaaccgcggcgcgcgggtgctggtggtgtgctccgagatcacggncgtcacgttccg 131
|||||||||||||||||| || || | ||||||||||||||||||| || ||||||||
Sbjct: 434 gaacaaccgcggcgcgcgcgtcctcgccgtgtgctccgagatcacggcggtgacgttccg 493
Query: 132 cggcccctccgagtcgcacctcgactcgctcgtgggccaggcgctgttcggcgacggcgc 191
|| ||||||||||| ||||||||||| | || || |||||||||||||||||||||||
Sbjct: 494 ggggccctccgagtcccacctcgactccatggtcgggcaggcgctgttcggcgacggcgc 553
Query: 192 ggcggccgtggtcgtgggcgccgacccggacgaccgcgtcgagcgcccgctcttccag 249
|||||| ||| |||| ||| ||||||| ||||| ||||||||| ||||| ||||||
Sbjct: 554 ggcggcggtgatcgtcggctccgaccccgacgaggccgtcgagcggccgctgttccag 611
>gb|CB652646.1|CB652646 OSJNEc02N20.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc02N20 5', mRNA sequence
Length = 767
Score = 228 bits (115), Expect = 1e-057
Identities = 207/238 (86%)
Strand = Plus / Plus
Query: 12 gtaccagcaggggtggttcgcgggcggcacggtgctgcgcgtggccaaggacctcgcgga 71
||||||||||||||| ||||| |||||||||||||| ||||| |||||||||||||| ||
Sbjct: 378 gtaccagcaggggtgcttcgccggcggcacggtgctccgcgtcgccaaggacctcgccga 437
Query: 72 gaacaaccgcggcgcgcgggtgctggtggtgtgctccgagatcacggncgtcacgttccg 131
|||||||||||||||||| || || | ||||||||||||||||||| || ||||||||
Sbjct: 438 gaacaaccgcggcgcgcgcgtcctcgccgtgtgctccgagatcacggcggtgacgttccg 497
Query: 132 cggcccctccgagtcgcacctcgactcgctcgtgggccaggcgctgttcggcgacggcgc 191
|| ||||||||||| ||||||||||| | || || |||||||||||||||||||||||
Sbjct: 498 ggggccctccgagtcccacctcgactccatggtcgggcaggcgctgttcggcgacggcgc 557
Query: 192 ggcggccgtggtcgtgggcgccgacccggacgaccgcgtcgagcgcccgctcttccag 249
|||||| ||| |||| ||| ||||||| ||||| ||||||||| ||||| ||||||
Sbjct: 558 ggcggcggtgatcgtcggctccgaccccgacgaggccgtcgagcggccgctgttccag 615
>gb|CB652671.1|CB652671 OSJNEc02O19.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc02O19 5', mRNA sequence
Length = 652
Score = 228 bits (115), Expect = 1e-057
Identities = 207/238 (86%)
Strand = Plus / Plus
Query: 12 gtaccagcaggggtggttcgcgggcggcacggtgctgcgcgtggccaaggacctcgcgga 71
||||||||||||||| ||||| |||||||||||||| ||||| |||||||||||||| ||
Sbjct: 379 gtaccagcaggggtgcttcgccggcggcacggtgctccgcgtcgccaaggacctcgccga 438
Query: 72 gaacaaccgcggcgcgcgggtgctggtggtgtgctccgagatcacggncgtcacgttccg 131
|||||||||||||||||| || || | ||||||||||||||||||| || ||||||||
Sbjct: 439 gaacaaccgcggcgcgcgcgtcctcgccgtgtgctccgagatcacggcggtgacgttccg 498
Query: 132 cggcccctccgagtcgcacctcgactcgctcgtgggccaggcgctgttcggcgacggcgc 191
|| ||||||||||| ||||||||||| | || || |||||||||||||||||||||||
Sbjct: 499 ggggccctccgagtcccacctcgactccatggtcgggcaggcgctgttcggcgacggcgc 558
Query: 192 ggcggccgtggtcgtgggcgccgacccggacgaccgcgtcgagcgcccgctcttccag 249
|||||| ||| |||| ||| ||||||| ||||| ||||||||| ||||| ||||||
Sbjct: 559 ggcggcggtgatcgtcggctccgaccccgacgaggccgtcgagcggccgctgttccag 616
>gb|CB655945.1|CB655945 OSJNEc09M07.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc09M07 5', mRNA sequence
Length = 753
Score = 228 bits (115), Expect = 1e-057
Identities = 207/238 (86%)
Strand = Plus / Plus
Query: 12 gtaccagcaggggtggttcgcgggcggcacggtgctgcgcgtggccaaggacctcgcgga 71
||||||||||||||| ||||| |||||||||||||| ||||| |||||||||||||| ||
Sbjct: 120 gtaccagcaggggtgcttcgccggcggcacggtgctccgcgtcgccaaggacctcgccga 179
Query: 72 gaacaaccgcggcgcgcgggtgctggtggtgtgctccgagatcacggncgtcacgttccg 131
|||||||||||||||||| || || | ||||||||||||||||||| || ||||||||
Sbjct: 180 gaacaaccgcggcgcgcgcgtcctcgccgtgtgctccgagatcacggcggtgacgttccg 239
Query: 132 cggcccctccgagtcgcacctcgactcgctcgtgggccaggcgctgttcggcgacggcgc 191
|| ||||||||||| ||||||||||| | || || |||||||||||||||||||||||
Sbjct: 240 ggggccctccgagtcccacctcgactccatggtcgggcaggcgctgttcggcgacggcgc 299
Query: 192 ggcggccgtggtcgtgggcgccgacccggacgaccgcgtcgagcgcccgctcttccag 249
|||||| ||| |||| ||| ||||||| ||||| ||||||||| ||||| ||||||
Sbjct: 300 ggcggcggtgatcgtcggctccgaccccgacgaggccgtcgagcggccgctgttccag 357
>gb|CB658948.1|CB658948 OSJNEc15G24.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc15G24 5', mRNA sequence
Length = 766
Score = 228 bits (115), Expect = 1e-057
Identities = 207/238 (86%)
Strand = Plus / Plus
Query: 12 gtaccagcaggggtggttcgcgggcggcacggtgctgcgcgtggccaaggacctcgcgga 71
||||||||||||||| ||||| |||||||||||||| ||||| |||||||||||||| ||
Sbjct: 183 gtaccagcaggggtgcttcgccggcggcacggtgctccgcgtcgccaaggacctcgccga 242
Query: 72 gaacaaccgcggcgcgcgggtgctggtggtgtgctccgagatcacggncgtcacgttccg 131
|||||||||||||||||| || || | ||||||||||||||||||| || ||||||||
Sbjct: 243 gaacaaccgcggcgcgcgcgtcctcgccgtgtgctccgagatcacggcggtgacgttccg 302
Query: 132 cggcccctccgagtcgcacctcgactcgctcgtgggccaggcgctgttcggcgacggcgc 191
|| ||||||||||| ||||||||||| | || || |||||||||||||||||||||||
Sbjct: 303 ggggccctccgagtcccacctcgactccatggtcgggcaggcgctgttcggcgacggcgc 362
Query: 192 ggcggccgtggtcgtgggcgccgacccggacgaccgcgtcgagcgcccgctcttccag 249
|||||| ||| |||| ||| ||||||| ||||| ||||||||| ||||| ||||||
Sbjct: 363 ggcggcggtgatcgtcggctccgaccccgacgaggccgtcgagcggccgctgttccag 420
>dbj|AB000801.2| Oryza sativa mRNA for chalcone synthase, complete cds
Length = 1782
Score = 228 bits (115), Expect = 1e-057
Identities = 207/238 (86%)
Strand = Plus / Plus
Query: 12 gtaccagcaggggtggttcgcgggcggcacggtgctgcgcgtggccaaggacctcgcgga 71
||||||||||||||| ||||| |||||||||||||| ||||| |||||||||||||| ||
Sbjct: 664 gtaccagcaggggtgcttcgccggcggcacggtgctccgcgtcgccaaggacctcgccga 723
Query: 72 gaacaaccgcggcgcgcgggtgctggtggtgtgctccgagatcacggncgtcacgttccg 131
|||||||||||||||||| || || | ||||||||||||||||||| || ||||||||
Sbjct: 724 gaacaaccgcggcgcgcgcgtcctcgccgtgtgctccgagatcacggcggtgacgttccg 783
Query: 132 cggcccctccgagtcgcacctcgactcgctcgtgggccaggcgctgttcggcgacggcgc 191
|| ||||||||||| ||||||||||| | || || |||||||||||||||||||||||
Sbjct: 784 ggggccctccgagtcccacctcgactccatggtcgggcaggcgctgttcggcgacggcgc 843
Query: 192 ggcggccgtggtcgtgggcgccgacccggacgaccgcgtcgagcgcccgctcttccag 249
|||||| ||| |||| ||| ||||||| ||||| ||||||||| ||||| ||||||
Sbjct: 844 ggcggcggtgatcgtcggctccgaccccgacgaggccgtcgagcggccgctgttccag 901
>dbj|AB058397.1| Oryza sativa (japonica cultivar-group) CHS gene for chalcone
synthase, complete cds
Length = 8072
Score = 228 bits (115), Expect = 1e-057
Identities = 207/238 (86%)
Strand = Plus / Plus
Query: 12 gtaccagcaggggtggttcgcgggcggcacggtgctgcgcgtggccaaggacctcgcgga 71
||||||||||||||| ||||| |||||||||||||| ||||| |||||||||||||| ||
Sbjct: 4049 gtaccagcaggggtgcttcgccggcggcacggtgctccgcgtcgccaaggacctcgccga 4108
Query: 72 gaacaaccgcggcgcgcgggtgctggtggtgtgctccgagatcacggncgtcacgttccg 131
|||||||||||||||||| || || | ||||||||||||||||||| || ||||||||
Sbjct: 4109 gaacaaccgcggcgcgcgcgtcctcgccgtgtgctccgagatcacggcggtgacgttccg 4168
Query: 132 cggcccctccgagtcgcacctcgactcgctcgtgggccaggcgctgttcggcgacggcgc 191
|| ||||||||||| ||||||||||| | || || |||||||||||||||||||||||
Sbjct: 4169 ggggccctccgagtcccacctcgactccatggtcgggcaggcgctgttcggcgacggcgc 4228
Query: 192 ggcggccgtggtcgtgggcgccgacccggacgaccgcgtcgagcgcccgctcttccag 249
|||||| ||| |||| ||| ||||||| ||||| ||||||||| ||||| ||||||
Sbjct: 4229 ggcggcggtgatcgtcggctccgaccccgacgaggccgtcgagcggccgctgttccag 4286
>gb|AC136925.1| Oryza sativa (japonica cultivar-group) chromosome 11 clone
OSJNBa0090B19, *** SEQUENCING IN PROGRESS ***, 7 ordered
pieces
Length = 113164
Score = 228 bits (115), Expect = 1e-057
Identities = 207/238 (86%)
Strand = Plus / Plus
Query: 12 gtaccagcaggggtggttcgcgggcggcacggtgctgcgcgtggccaaggacctcgcgga 71
||||||||||||||| ||||| |||||||||||||| ||||| |||||||||||||| ||
Sbjct: 86046 gtaccagcaggggtgcttcgccggcggcacggtgctccgcgtcgccaaggacctcgccga 86105
Query: 72 gaacaaccgcggcgcgcgggtgctggtggtgtgctccgagatcacggncgtcacgttccg 131
|||||||||||||||||| || || | ||||||||||||||||||| || ||||||||
Sbjct: 86106 gaacaaccgcggcgcgcgcgtcctcgccgtgtgctccgagatcacggcggtgacgttccg 86165
Query: 132 cggcccctccgagtcgcacctcgactcgctcgtgggccaggcgctgttcggcgacggcgc 191
|| ||||||||||| ||||||||||| | || || |||||||||||||||||||||||
Sbjct: 86166 ggggccctccgagtcccacctcgactccatggtcgggcaggcgctgttcggcgacggcgc 86225
Query: 192 ggcggccgtggtcgtgggcgccgacccggacgaccgcgtcgagcgcccgctcttccag 249
|||||| ||| |||| ||| ||||||| ||||| ||||||||| ||||| ||||||
Sbjct: 86226 ggcggcggtgatcgtcggctccgaccccgacgaggccgtcgagcggccgctgttccag 86283
>gb|AC134256.4| Oryza sativa (japonica cultivar-group), complete sequence
Length = 178233
Score = 228 bits (115), Expect = 1e-057
Identities = 207/238 (86%)
Strand = Plus / Minus
Query: 12 gtaccagcaggggtggttcgcgggcggcacggtgctgcgcgtggccaaggacctcgcgga 71
||||||||||||||| ||||| |||||||||||||| ||||| |||||||||||||| ||
Sbjct: 27154 gtaccagcaggggtgcttcgccggcggcacggtgctccgcgtcgccaaggacctcgccga 27095
Query: 72 gaacaaccgcggcgcgcgggtgctggtggtgtgctccgagatcacggncgtcacgttccg 131
|||||||||||||||||| || || | ||||||||||||||||||| || ||||||||
Sbjct: 27094 gaacaaccgcggcgcgcgcgtcctcgccgtgtgctccgagatcacggcggtgacgttccg 27035
Query: 132 cggcccctccgagtcgcacctcgactcgctcgtgggccaggcgctgttcggcgacggcgc 191
|| ||||||||||| ||||||||||| | || || |||||||||||||||||||||||
Sbjct: 27034 ggggccctccgagtcccacctcgactccatggtcgggcaggcgctgttcggcgacggcgc 26975
Query: 192 ggcggccgtggtcgtgggcgccgacccggacgaccgcgtcgagcgcccgctcttccag 249
|||||| ||| |||| ||| ||||||| ||||| ||||||||| ||||| ||||||
Sbjct: 26974 ggcggcggtgatcgtcggctccgaccccgacgaggccgtcgagcggccgctgttccag 26917
>ref|NT_107091.1| Oryza sativa (japonica cultivar-group), complete sequence
Length = 178233
Score = 228 bits (115), Expect = 1e-057
Identities = 207/238 (86%)
Strand = Plus / Minus
Query: 12 gtaccagcaggggtggttcgcgggcggcacggtgctgcgcgtggccaaggacctcgcgga 71
||||||||||||||| ||||| |||||||||||||| ||||| |||||||||||||| ||
Sbjct: 27154 gtaccagcaggggtgcttcgccggcggcacggtgctccgcgtcgccaaggacctcgccga 27095
Query: 72 gaacaaccgcggcgcgcgggtgctggtggtgtgctccgagatcacggncgtcacgttccg 131
|||||||||||||||||| || || | ||||||||||||||||||| || ||||||||
Sbjct: 27094 gaacaaccgcggcgcgcgcgtcctcgccgtgtgctccgagatcacggcggtgacgttccg 27035
Query: 132 cggcccctccgagtcgcacctcgactcgctcgtgggccaggcgctgttcggcgacggcgc 191
|| ||||||||||| ||||||||||| | || || |||||||||||||||||||||||
Sbjct: 27034 ggggccctccgagtcccacctcgactccatggtcgggcaggcgctgttcggcgacggcgc 26975
Query: 192 ggcggccgtggtcgtgggcgccgacccggacgaccgcgtcgagcgcccgctcttccag 249
|||||| ||| |||| ||| ||||||| ||||| ||||||||| ||||| ||||||
Sbjct: 26974 ggcggcggtgatcgtcggctccgaccccgacgaggccgtcgagcggccgctgttccag 26917
>gb|AACV01023282.1| Oryza sativa (japonica cultivar-group) chromosome 11 Ctg023282, whole
genome shotgun sequence
Length = 7438
Score = 228 bits (115), Expect = 1e-057
Identities = 207/238 (86%)
Strand = Plus / Minus
Query: 12 gtaccagcaggggtggttcgcgggcggcacggtgctgcgcgtggccaaggacctcgcgga 71
||||||||||||||| ||||| |||||||||||||| ||||| |||||||||||||| ||
Sbjct: 2202 gtaccagcaggggtgcttcgccggcggcacggtgctccgcgtcgccaaggacctcgccga 2143
Query: 72 gaacaaccgcggcgcgcgggtgctggtggtgtgctccgagatcacggncgtcacgttccg 131
|||||||||||||||||| || || | ||||||||||||||||||| || ||||||||
Sbjct: 2142 gaacaaccgcggcgcgcgcgtcctcgccgtgtgctccgagatcacggcggtgacgttccg 2083
Query: 132 cggcccctccgagtcgcacctcgactcgctcgtgggccaggcgctgttcggcgacggcgc 191
|| ||||||||||| ||||||||||| | || || |||||||||||||||||||||||
Sbjct: 2082 ggggccctccgagtcccacctcgactccatggtcgggcaggcgctgttcggcgacggcgc 2023
Query: 192 ggcggccgtggtcgtgggcgccgacccggacgaccgcgtcgagcgcccgctcttccag 249
|||||| ||| |||| ||| ||||||| ||||| ||||||||| ||||| ||||||
Sbjct: 2022 ggcggcggtgatcgtcggctccgaccccgacgaggccgtcgagcggccgctgttccag 1965
>gb|CH401264.1| Oryza sativa (japonica cultivar-group) chromosome 11 scaffold000101 genomic
scaffold, whole genome shotgun sequence
Length = 5106408
Score = 228 bits (115), Expect = 1e-057
Identities = 207/238 (86%)
Strand = Plus / Minus
Query: 12 gtaccagcaggggtggttcgcgggcggcacggtgctgcgcgtggccaaggacctcgcgga 71
||||||||||||||| ||||| |||||||||||||| ||||| |||||||||||||| ||
Sbjct: 1316263 gtaccagcaggggtgcttcgccggcggcacggtgctccgcgtcgccaaggacctcgccga 1316204
Query: 72 gaacaaccgcggcgcgcgggtgctggtggtgtgctccgagatcacggncgtcacgttccg 131
|||||||||||||||||| || || | ||||||||||||||||||| || ||||||||
Sbjct: 1316203 gaacaaccgcggcgcgcgcgtcctcgccgtgtgctccgagatcacggcggtgacgttccg 1316144
Query: 132 cggcccctccgagtcgcacctcgactcgctcgtgggccaggcgctgttcggcgacggcgc 191
|| ||||||||||| ||||||||||| | || || |||||||||||||||||||||||
Sbjct: 1316143 ggggccctccgagtcccacctcgactccatggtcgggcaggcgctgttcggcgacggcgc 1316084
Query: 192 ggcggccgtggtcgtgggcgccgacccggacgaccgcgtcgagcgcccgctcttccag 249
|||||| ||| |||| ||| ||||||| ||||| ||||||||| ||||| ||||||
Sbjct: 1316083 ggcggcggtgatcgtcggctccgaccccgacgaggccgtcgagcggccgctgttccag 1316026
Score = 58.0 bits (29), Expect = 2e-006
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 53 tggccaaggacctcgcggagaacaaccgcggcgcgcgggtgctggtggtgtgc 105
|||| |||||| |||| |||||||||||||||||||| ||||| |||| ||||
Sbjct: 1274930 tggcaaaggacatcgccgagaacaaccgcggcgcgcgcgtgctcgtggcgtgc 1274982
Score = 56.0 bits (28), Expect = 9e-006
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 53 tggccaaggacctcgcggagaacaaccgcggcgcgcgggtgctggtgg 100
|||||||||||||||| ||||||| || ||||||||| || |||||||
Sbjct: 1280988 tggccaaggacctcgccgagaacacccccggcgcgcgcgtcctggtgg 1280941
Score = 48.1 bits (24), Expect = 0.002
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 39 cacggtgctgcgcgtggccaaggacctcgcggagaacaaccgcggcgcgcgggtgctggt 98
||||| |||||| |||||||||||| |||| |||| ||||| ||| || ||||||| ||
Sbjct: 3136439 cacggcgctgcgtgtggccaaggacatcgccgagagcaaccacggtgccagggtgctcgt 3136498
Query: 99 ggtg 102
||||
Sbjct: 3136499 ggtg 3136502
Score = 46.1 bits (23), Expect = 0.009
Identities = 54/63 (85%), Gaps = 1/63 (1%)
Strand = Plus / Minus
Query: 178 ttcggcgacggcgcggcggccgtggtcgt-gggcgccgacccggacgaccgcgtcgagcg 236
|||||||||||||| | |||| ||||| |||||||||||||| || || |||||||||
Sbjct: 1280865 ttcggcgacggcgccggcgccgccgtcgtcgggcgccgacccggtcgtccccgtcgagcg 1280806
Query: 237 ccc 239
|||
Sbjct: 1280805 ccc 1280803
Score = 44.1 bits (22), Expect = 0.034
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 152 tcgactcgctcgtgggccaggcgctgttcggcgacggcgcgg 193
||||| || |||| || ||||||||||||||||| |||||||
Sbjct: 1245296 tcgacacgatcgtcgggcaggcgctgttcggcgatggcgcgg 1245255
Score = 42.1 bits (21), Expect = 0.14
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 135 cccctccgagtcgcacctcgactcgctcgtgggccaggcgctgttcggcgacggcgc 191
||||| |||| ||| ||||||| ||||||| | | ||| |||||||||||||||||
Sbjct: 1275012 cccctacgaggcgcgcctcgacgcgctcgtcgccatggcactgttcggcgacggcgc 1275068
>gb|CM000148.1| Oryza sativa (japonica cultivar-group) chromosome 11, whole genome shotgun
sequence
Length = 22593549
Score = 228 bits (115), Expect = 1e-057
Identities = 207/238 (86%)
Strand = Plus / Minus
Query: 12 gtaccagcaggggtggttcgcgggcggcacggtgctgcgcgtggccaaggacctcgcgga 71
||||||||||||||| ||||| |||||||||||||| ||||| |||||||||||||| ||
Sbjct: 15481245 gtaccagcaggggtgcttcgccggcggcacggtgctccgcgtcgccaaggacctcgccga 15481186
Query: 72 gaacaaccgcggcgcgcgggtgctggtggtgtgctccgagatcacggncgtcacgttccg 131
|||||||||||||||||| || || | ||||||||||||||||||| || ||||||||
Sbjct: 15481185 gaacaaccgcggcgcgcgcgtcctcgccgtgtgctccgagatcacggcggtgacgttccg 15481126
Query: 132 cggcccctccgagtcgcacctcgactcgctcgtgggccaggcgctgttcggcgacggcgc 191
|| ||||||||||| ||||||||||| | || || |||||||||||||||||||||||
Sbjct: 15481125 ggggccctccgagtcccacctcgactccatggtcgggcaggcgctgttcggcgacggcgc 15481066
Query: 192 ggcggccgtggtcgtgggcgccgacccggacgaccgcgtcgagcgcccgctcttccag 249
|||||| ||| |||| ||| ||||||| ||||| ||||||||| ||||| ||||||
Sbjct: 15481065 ggcggcggtgatcgtcggctccgaccccgacgaggccgtcgagcggccgctgttccag 15481008
Score = 61.9 bits (31), Expect = 1e-007
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 172 gcgctgttcggcgacggcgcggcggccgtggtcgtgggcgccgacccggacgaccgcgtc 231
|||||||||||||||||| ||| ||||| |||| ||||||||||||| |||| |||
Sbjct: 2569082 gcgctgttcggcgacggctcgggcgccgtcatcgtcggcgccgacccggtcgacgccgtg 2569141
Query: 232 gagcgcccgct 242
|||||||||||
Sbjct: 2569142 gagcgcccgct 2569152
Score = 58.0 bits (29), Expect = 2e-006
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 53 tggccaaggacctcgcggagaacaaccgcggcgcgcgggtgctggtggtgtgc 105
|||| |||||| |||| |||||||||||||||||||| ||||| |||| ||||
Sbjct: 15439912 tggcaaaggacatcgccgagaacaaccgcggcgcgcgcgtgctcgtggcgtgc 15439964
Score = 56.0 bits (28), Expect = 9e-006
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 53 tggccaaggacctcgcggagaacaaccgcggcgcgcgggtgctggtgg 100
|||||||||||||||| ||||||| || ||||||||| || |||||||
Sbjct: 15445970 tggccaaggacctcgccgagaacacccccggcgcgcgcgtcctggtgg 15445923
Score = 50.1 bits (25), Expect = 6e-004
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 55 gccaaggacctcgcggagaacaaccgcggcgcgcgggtgctggtggtgtgctccgagatc 114
|||||||| ||||| |||||||||||||| ||||| || || || | ||||||||||||
Sbjct: 2568959 gccaaggaactcgccgagaacaaccgcggtgcgcgcgtcctcgtcgcctgctccgagatc 2569018
Query: 115 a 115
|
Sbjct: 2569019 a 2569019
Score = 48.1 bits (24), Expect = 0.002
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 39 cacggtgctgcgcgtggccaaggacctcgcggagaacaaccgcggcgcgcgggtgctggt 98
||||| |||||| |||||||||||| |||| |||| ||||| ||| || ||||||| ||
Sbjct: 17301421 cacggcgctgcgtgtggccaaggacatcgccgagagcaaccacggtgccagggtgctcgt 17301480
Query: 99 ggtg 102
||||
Sbjct: 17301481 ggtg 17301484
Score = 46.1 bits (23), Expect = 0.009
Identities = 54/63 (85%), Gaps = 1/63 (1%)
Strand = Plus / Minus
Query: 178 ttcggcgacggcgcggcggccgtggtcgt-gggcgccgacccggacgaccgcgtcgagcg 236
|||||||||||||| | |||| ||||| |||||||||||||| || || |||||||||
Sbjct: 15445847 ttcggcgacggcgccggcgccgccgtcgtcgggcgccgacccggtcgtccccgtcgagcg 15445788
Query: 237 ccc 239
|||
Sbjct: 15445787 ccc 15445785
Score = 44.1 bits (22), Expect = 0.034
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 152 tcgactcgctcgtgggccaggcgctgttcggcgacggcgcgg 193
||||| || |||| || ||||||||||||||||| |||||||
Sbjct: 15410278 tcgacacgatcgtcgggcaggcgctgttcggcgatggcgcgg 15410237
Score = 42.1 bits (21), Expect = 0.14
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 135 cccctccgagtcgcacctcgactcgctcgtgggccaggcgctgttcggcgacggcgc 191
||||| |||| ||| ||||||| ||||||| | | ||| |||||||||||||||||
Sbjct: 15439994 cccctacgaggcgcgcctcgacgcgctcgtcgccatggcactgttcggcgacggcgc 15440050
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
sequence
Length = 28386948
Score = 228 bits (115), Expect = 1e-057
Identities = 207/238 (86%)
Strand = Plus / Minus
Query: 12 gtaccagcaggggtggttcgcgggcggcacggtgctgcgcgtggccaaggacctcgcgga 71
||||||||||||||| ||||| |||||||||||||| ||||| |||||||||||||| ||
Sbjct: 18612774 gtaccagcaggggtgcttcgccggcggcacggtgctccgcgtcgccaaggacctcgccga 18612715
Query: 72 gaacaaccgcggcgcgcgggtgctggtggtgtgctccgagatcacggncgtcacgttccg 131
|||||||||||||||||| || || | ||||||||||||||||||| || ||||||||
Sbjct: 18612714 gaacaaccgcggcgcgcgcgtcctcgccgtgtgctccgagatcacggcggtgacgttccg 18612655
Query: 132 cggcccctccgagtcgcacctcgactcgctcgtgggccaggcgctgttcggcgacggcgc 191
|| ||||||||||| ||||||||||| | || || |||||||||||||||||||||||
Sbjct: 18612654 ggggccctccgagtcccacctcgactccatggtcgggcaggcgctgttcggcgacggcgc 18612595
Query: 192 ggcggccgtggtcgtgggcgccgacccggacgaccgcgtcgagcgcccgctcttccag 249
|||||| ||| |||| ||| ||||||| ||||| ||||||||| ||||| ||||||
Sbjct: 18612594 ggcggcggtgatcgtcggctccgaccccgacgaggccgtcgagcggccgctgttccag 18612537
Score = 61.9 bits (31), Expect = 1e-007
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 55 gccaaggacctcgcggagaacaaccgcggcgcgcgggtgctggtggtgtgc 105
||||||||| |||| |||||||||||||||||||| ||||| |||| ||||
Sbjct: 18571725 gccaaggacatcgccgagaacaaccgcggcgcgcgcgtgctcgtggcgtgc 18571775
Score = 58.0 bits (29), Expect = 2e-006
Identities = 47/53 (88%)
Strand = Plus / Minus
Query: 43 gtgctgcgcgtggccaaggacctcgcggagaacaaccgcggcgcgcgggtgct 95
||||| ||||| || ||||||||||| |||||||||| ||||||||| |||||
Sbjct: 18542409 gtgctccgcgtcgcaaaggacctcgccgagaacaaccccggcgcgcgcgtgct 18542357
Score = 56.0 bits (28), Expect = 9e-006
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 53 tggccaaggacctcgcggagaacaaccgcggcgcgcgggtgctggtgg 100
|||||||||||||||| ||||||| || ||||||||| || |||||||
Sbjct: 18577996 tggccaaggacctcgccgagaacacccccggcgcgcgcgtcctggtgg 18577949
Score = 52.0 bits (26), Expect = 1e-004
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 178 ttcggcgacggcgcggcggccgtggtcgtgggcgccgacccggacgaccgcgtcgagcgc 237
|||||||||||||| | |||| ||||| ||||||||||||| || || ||||||||||
Sbjct: 18577871 ttcggcgacggcgccggcgccgccgtcgtcggcgccgacccggtcgtccccgtcgagcgc 18577812
Query: 238 cc 239
||
Sbjct: 18577811 cc 18577810
Score = 50.1 bits (25), Expect = 6e-004
Identities = 70/85 (82%)
Strand = Plus / Plus
Query: 135 cccctccgagtcgcacctcgactcgctcgtgggccaggcgctgttcggcgacggcgcggc 194
||||| |||| ||| ||||||| ||||||| | | ||| ||||||||||||||||| |
Sbjct: 18571805 cccctacgaggcgcgcctcgacgcgctcgtcgccatggcactgttcggcgacggcgccgg 18571864
Query: 195 ggccgtggtcgtgggcgccgacccg 219
|||| ||||||||||| ||||||
Sbjct: 18571865 cgccgccgtcgtgggcgcggacccg 18571889
Score = 48.1 bits (24), Expect = 0.002
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 39 cacggtgctgcgcgtggccaaggacctcgcggagaacaaccgcggcgcgcgggtgctggt 98
||||| |||||| |||||||||||| |||| |||| ||||| ||| || ||||||| ||
Sbjct: 20249636 cacggcgctgcgtgtggccaaggacatcgccgagagcaaccacggtgccagggtgctcgt 20249695
Query: 99 ggtg 102
||||
Sbjct: 20249696 ggtg 20249699
Score = 44.1 bits (22), Expect = 0.034
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 152 tcgactcgctcgtgggccaggcgctgttcggcgacggcgcgg 193
||||| || |||| || ||||||||||||||||| |||||||
Sbjct: 18542300 tcgacacgatcgtcgggcaggcgctgttcggcgatggcgcgg 18542259
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
Length = 28369397
Score = 228 bits (115), Expect = 1e-057
Identities = 207/238 (86%)
Strand = Plus / Minus
Query: 12 gtaccagcaggggtggttcgcgggcggcacggtgctgcgcgtggccaaggacctcgcgga 71
||||||||||||||| ||||| |||||||||||||| ||||| |||||||||||||| ||
Sbjct: 18772175 gtaccagcaggggtgcttcgccggcggcacggtgctccgcgtcgccaaggacctcgccga 18772116
Query: 72 gaacaaccgcggcgcgcgggtgctggtggtgtgctccgagatcacggncgtcacgttccg 131
|||||||||||||||||| || || | ||||||||||||||||||| || ||||||||
Sbjct: 18772115 gaacaaccgcggcgcgcgcgtcctcgccgtgtgctccgagatcacggcggtgacgttccg 18772056
Query: 132 cggcccctccgagtcgcacctcgactcgctcgtgggccaggcgctgttcggcgacggcgc 191
|| ||||||||||| ||||||||||| | || || |||||||||||||||||||||||
Sbjct: 18772055 ggggccctccgagtcccacctcgactccatggtcgggcaggcgctgttcggcgacggcgc 18771996
Query: 192 ggcggccgtggtcgtgggcgccgacccggacgaccgcgtcgagcgcccgctcttccag 249
|||||| ||| |||| ||| ||||||| ||||| ||||||||| ||||| ||||||
Sbjct: 18771995 ggcggcggtgatcgtcggctccgaccccgacgaggccgtcgagcggccgctgttccag 18771938
Score = 61.9 bits (31), Expect = 1e-007
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 55 gccaaggacctcgcggagaacaaccgcggcgcgcgggtgctggtggtgtgc 105
||||||||| |||| |||||||||||||||||||| ||||| |||| ||||
Sbjct: 18731126 gccaaggacatcgccgagaacaaccgcggcgcgcgcgtgctcgtggcgtgc 18731176
Score = 58.0 bits (29), Expect = 2e-006
Identities = 47/53 (88%)
Strand = Plus / Minus
Query: 43 gtgctgcgcgtggccaaggacctcgcggagaacaaccgcggcgcgcgggtgct 95
||||| ||||| || ||||||||||| |||||||||| ||||||||| |||||
Sbjct: 18701810 gtgctccgcgtcgcaaaggacctcgccgagaacaaccccggcgcgcgcgtgct 18701758
Score = 56.0 bits (28), Expect = 9e-006
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 53 tggccaaggacctcgcggagaacaaccgcggcgcgcgggtgctggtgg 100
|||||||||||||||| ||||||| || ||||||||| || |||||||
Sbjct: 18737397 tggccaaggacctcgccgagaacacccccggcgcgcgcgtcctggtgg 18737350
Score = 52.0 bits (26), Expect = 1e-004
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 178 ttcggcgacggcgcggcggccgtggtcgtgggcgccgacccggacgaccgcgtcgagcgc 237
|||||||||||||| | |||| ||||| ||||||||||||| || || ||||||||||
Sbjct: 18737272 ttcggcgacggcgccggcgccgccgtcgtcggcgccgacccggtcgtccccgtcgagcgc 18737213
Query: 238 cc 239
||
Sbjct: 18737212 cc 18737211
Score = 50.1 bits (25), Expect = 6e-004
Identities = 70/85 (82%)
Strand = Plus / Plus
Query: 135 cccctccgagtcgcacctcgactcgctcgtgggccaggcgctgttcggcgacggcgcggc 194
||||| |||| ||| ||||||| ||||||| | | ||| ||||||||||||||||| |
Sbjct: 18731206 cccctacgaggcgcgcctcgacgcgctcgtcgccatggcactgttcggcgacggcgccgg 18731265
Query: 195 ggccgtggtcgtgggcgccgacccg 219
|||| ||||||||||| ||||||
Sbjct: 18731266 cgccgccgtcgtgggcgcggacccg 18731290
Score = 48.1 bits (24), Expect = 0.002
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 39 cacggtgctgcgcgtggccaaggacctcgcggagaacaaccgcggcgcgcgggtgctggt 98
||||| |||||| |||||||||||| |||| |||| ||||| ||| || ||||||| ||
Sbjct: 20559959 cacggcgctgcgtgtggccaaggacatcgccgagagcaaccacggtgccagggtgctcgt 20560018
Query: 99 ggtg 102
||||
Sbjct: 20560019 ggtg 20560022
Score = 44.1 bits (22), Expect = 0.034
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 152 tcgactcgctcgtgggccaggcgctgttcggcgacggcgcgg 193
||||| || |||| || ||||||||||||||||| |||||||
Sbjct: 18701701 tcgacacgatcgtcgggcaggcgctgttcggcgatggcgcgg 18701660
>gb|CB674631.1|CB674631 OSJNEe09M08.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe09M08 5', mRNA sequence
Length = 732
Score = 220 bits (111), Expect = 3e-055
Identities = 206/238 (86%)
Strand = Plus / Plus
Query: 12 gtaccagcaggggtggttcgcgggcggcacggtgctgcgcgtggccaaggacctcgcgga 71
||||||||||||||| ||||| |||||||||||||| ||||| |||||||||||||| ||
Sbjct: 433 gtaccagcaggggtgcttcgccggcggcacggtgctccgcgtcgccaaggacctcgccga 492
Query: 72 gaacaaccgcggcgcgcgggtgctggtggtgtgctccgagatcacggncgtcacgttccg 131
|||||||||||||||||| || || | ||||||||||||||||||| || ||||||||
Sbjct: 493 gaacaaccgcggcgcgcgcgtcctcgccgtgtgctccgagatcacggcggtgacgttccg 552
Query: 132 cggcccctccgagtcgcacctcgactcgctcgtgggccaggcgctgttcggcgacggcgc 191
|| ||||||||||| ||||||||||| | || || |||||||||||||||||||||||
Sbjct: 553 ggggccctccgagtcccacctcgactccatggtcgggcaggcgctgttcggcgacggcgc 612
Query: 192 ggcggccgtggtcgtgggcgccgacccggacgaccgcgtcgagcgcccgctcttccag 249
|||||| ||| |||| || ||||||| ||||| ||||||||| ||||| ||||||
Sbjct: 613 ggcggcggtgatcgtccgctccgaccccgacgaggccgtcgagcggccgctgttccag 670
>dbj|AK067810.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013119K06, full
insert sequence
Length = 1755
Score = 220 bits (111), Expect = 3e-055
Identities = 206/238 (86%)
Strand = Plus / Plus
Query: 12 gtaccagcaggggtggttcgcgggcggcacggtgctgcgcgtggccaaggacctcgcgga 71
||||||| ||||||| ||||| |||||||||||||| ||||| |||||||||||||| ||
Sbjct: 655 gtaccagtaggggtgcttcgccggcggcacggtgctccgcgtcgccaaggacctcgccga 714
Query: 72 gaacaaccgcggcgcgcgggtgctggtggtgtgctccgagatcacggncgtcacgttccg 131
|||||||||||||||||| || || | ||||||||||||||||||| || ||||||||
Sbjct: 715 gaacaaccgcggcgcgcgcgtcctcgccgtgtgctccgagatcacggcggtgacgttccg 774
Query: 132 cggcccctccgagtcgcacctcgactcgctcgtgggccaggcgctgttcggcgacggcgc 191
|| ||||||||||| ||||||||||| | || || |||||||||||||||||||||||
Sbjct: 775 ggggccctccgagtcccacctcgactccatggtcgggcaggcgctgttcggcgacggcgc 834
Query: 192 ggcggccgtggtcgtgggcgccgacccggacgaccgcgtcgagcgcccgctcttccag 249
|||||| ||| |||| ||| ||||||| ||||| ||||||||| ||||| ||||||
Sbjct: 835 ggcggcggtgatcgtcggctccgaccccgacgaggccgtcgagcggccgctgttccag 892
>gb|AU101871.1|AU101871 AU101871 Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA clone S16420, mRNA sequence
Length = 590
Score = 218 bits (110), Expect = 1e-054
Identities = 187/213 (87%)
Strand = Plus / Plus
Query: 12 gtaccagcaggggtggttcgcgggcggcacggtgctgcgcgtggccaaggacctcgcgga 71
||||||||||||||| ||||| |||||||||||||| ||||| |||||||||||||| ||
Sbjct: 369 gtaccagcaggggtgcttcgccggcggcacggtgctccgcgtcgccaaggacctcgccga 428
Query: 72 gaacaaccgcggcgcgcgggtgctggtggtgtgctccgagatcacggncgtcacgttccg 131
|||||||||||||||||| || || | ||||||||||||||||||| || ||||||||
Sbjct: 429 gaacaaccgcggcgcgcgcgtcctcgccgtgtgctccgagatcacggcggtgacgttccg 488
Query: 132 cggcccctccgagtcgcacctcgactcgctcgtgggccaggcgctgttcggcgacggcgc 191
|| ||||||||||| ||||||||||| | || || |||||||||||||||||||||||
Sbjct: 489 ggggccctccgagtcccacctcgactccatggtcgggcaggcgctgttcggcgacggcgc 548
Query: 192 ggcggccgtggtcgtgggcgccgacccggacga 224
|||||| ||| |||| ||| ||||||| |||||
Sbjct: 549 ggcggcggtgatcgtcggctccgaccccgacga 581
>gb|CB653703.1|CB653703 OSJNEc04P21.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc04P21 5', mRNA sequence
Length = 568
Score = 212 bits (107), Expect = 6e-053
Identities = 205/238 (86%)
Strand = Plus / Plus
Query: 12 gtaccagcaggggtggttcgcgggcggcacggtgctgcgcgtggccaaggacctcgcgga 71
||||||||||||||| ||||| |||||||||||||| ||||| |||||||||||||| ||
Sbjct: 75 gtaccagcaggggtgcttcgccggcggcacggtgctccgcgtcgccaaggacctcgccga 134
Query: 72 gaacaaccgcggcgcgcgggtgctggtggtgtgctccgagatcacggncgtcacgttccg 131
|||||||||||||||||| || || | ||||||||||||||||||| || ||||||||
Sbjct: 135 gaacaaccgcggcgcgcgcgtcctcgccgtgtgctccgagatcacggcggtgacgttccg 194
Query: 132 cggcccctccgagtcgcacctcgactcgctcgtgggccaggcgctgttcggcgacggcgc 191
|| ||||||||||| ||||||||||| | || || |||||||||||||||||||||||
Sbjct: 195 ggggccctccgagtcccacctcgactccatggtcgggcaggcgctgttcggcgacggcgc 254
Query: 192 ggcggccgtggtcgtgggcgccgacccggacgaccgcgtcgagcgcccgctcttccag 249
|||||| ||| || | ||| ||||||| ||||| |||| |||| ||||| ||||||
Sbjct: 255 ggcggcggtgatcatcggctccgaccccgacgaggccgtcaagcggccgctgttccag 312
>gb|CB680849.1|CB680849 OSJNEf06E21.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf06E21 5', mRNA sequence
Length = 412
Score = 206 bits (104), Expect = 4e-051
Identities = 181/207 (87%)
Strand = Plus / Plus
Query: 12 gtaccagcaggggtggttcgcgggcggcacggtgctgcgcgtggccaaggacctcgcgga 71
||||||||||||||| ||||| |||||||||||||| ||||| |||||||||||||| ||
Sbjct: 206 gtaccagcaggggtgcttcgccggcggcacggtgctccgcgtcgccaaggacctcgccga 265
Query: 72 gaacaaccgcggcgcgcgggtgctggtggtgtgctccgagatcacggncgtcacgttccg 131
|||||||||||||||||| || || | ||||||||||||||||||| || ||||||||
Sbjct: 266 gaacaaccgcggcgcgcgcgtcctcgccgtgtgctccgagatcacggcggtgacgttccg 325
Query: 132 cggcccctccgagtcgcacctcgactcgctcgtgggccaggcgctgttcggcgacggcgc 191
|| ||||||||||| ||||||||||| | || || |||||||||||||||||| ||||
Sbjct: 326 ggggccctccgagtcccacctcgactccatggtcgggcaggcgctgttcggcgaccgcgc 385
Query: 192 ggcggccgtggtcgtgggcgccgaccc 218
|||||| ||| |||| ||| |||||||
Sbjct: 386 ggcggcggtgatcgtcggctccgaccc 412
>dbj|AP004002.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OJ1116_C08
Length = 102317
Score = 202 bits (102), Expect = 6e-050
Identities = 185/213 (86%)
Strand = Plus / Minus
Query: 12 gtaccagcaggggtggttcgcgggcggcacggtgctgcgcgtggccaaggacctcgcgga 71
||||||||||||||| ||||| || ||||||||||||||||||||||||||||| || ||
Sbjct: 78050 gtaccagcaggggtgcttcgccggtggcacggtgctgcgcgtggccaaggacctggccga 77991
Query: 72 gaacaaccgcggcgcgcgggtgctggtggtgtgctccgagatcacggncgtcacgttccg 131
|||||||||||||||||||||||||||||||||||| ||||||| || | | |||||
Sbjct: 77990 gaacaaccgcggcgcgcgggtgctggtggtgtgctcggagatcatggcgatggccttccg 77931
Query: 132 cggcccctccgagtcgcacctcgactcgctcgtgggccaggcgctgttcggcgacggcgc 191
|| || |||||||||||||||||||| ||||| || || ||||| ||||||||||||||
Sbjct: 77930 ggggccgtccgagtcgcacctcgactccctcgtcgggcacgcgctcttcggcgacggcgc 77871
Query: 192 ggcggccgtggtcgtgggcgccgacccggacga 224
||||| ||| |||| ||| | ||||| |||||
Sbjct: 77870 agcggcggtgatcgtcggctctgaccccgacga 77838
>gb|AACV01015437.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg015437, whole
genome shotgun sequence
Length = 2098
Score = 202 bits (102), Expect = 6e-050
Identities = 185/213 (86%)
Strand = Plus / Minus
Query: 12 gtaccagcaggggtggttcgcgggcggcacggtgctgcgcgtggccaaggacctcgcgga 71
||||||||||||||| ||||| || ||||||||||||||||||||||||||||| || ||
Sbjct: 1766 gtaccagcaggggtgcttcgccggtggcacggtgctgcgcgtggccaaggacctggccga 1707
Query: 72 gaacaaccgcggcgcgcgggtgctggtggtgtgctccgagatcacggncgtcacgttccg 131
|||||||||||||||||||||||||||||||||||| ||||||| || | | |||||
Sbjct: 1706 gaacaaccgcggcgcgcgggtgctggtggtgtgctcggagatcatggcgatggccttccg 1647
Query: 132 cggcccctccgagtcgcacctcgactcgctcgtgggccaggcgctgttcggcgacggcgc 191
|| || |||||||||||||||||||| ||||| || || ||||| ||||||||||||||
Sbjct: 1646 ggggccgtccgagtcgcacctcgactccctcgtcgggcacgcgctcttcggcgacggcgc 1587
Query: 192 ggcggccgtggtcgtgggcgccgacccggacga 224
||||| ||| |||| ||| | ||||| |||||
Sbjct: 1586 agcggcggtgatcgtcggctctgaccccgacga 1554
>ref|NM_186515.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1212
Score = 202 bits (102), Expect = 6e-050
Identities = 185/213 (86%)
Strand = Plus / Plus
Query: 12 gtaccagcaggggtggttcgcgggcggcacggtgctgcgcgtggccaaggacctcgcgga 71
||||||||||||||| ||||| || ||||||||||||||||||||||||||||| || ||
Sbjct: 489 gtaccagcaggggtgcttcgccggtggcacggtgctgcgcgtggccaaggacctggccga 548
Query: 72 gaacaaccgcggcgcgcgggtgctggtggtgtgctccgagatcacggncgtcacgttccg 131
|||||||||||||||||||||||||||||||||||| ||||||| || | | |||||
Sbjct: 549 gaacaaccgcggcgcgcgggtgctggtggtgtgctcggagatcatggcgatggccttccg 608
Query: 132 cggcccctccgagtcgcacctcgactcgctcgtgggccaggcgctgttcggcgacggcgc 191
|| || |||||||||||||||||||| ||||| || || ||||| ||||||||||||||
Sbjct: 609 ggggccgtccgagtcgcacctcgactccctcgtcgggcacgcgctcttcggcgacggcgc 668
Query: 192 ggcggccgtggtcgtgggcgccgacccggacga 224
||||| ||| |||| ||| | ||||| |||||
Sbjct: 669 agcggcggtgatcgtcggctctgaccccgacga 701
>ref|NT_079879.2| Oryza sativa (japonica cultivar-group)
Length = 11570172
Score = 202 bits (102), Expect = 6e-050
Identities = 185/213 (86%)
Strand = Plus / Minus
Query: 12 gtaccagcaggggtggttcgcgggcggcacggtgctgcgcgtggccaaggacctcgcgga 71
||||||||||||||| ||||| || ||||||||||||||||||||||||||||| || ||
Sbjct: 6283562 gtaccagcaggggtgcttcgccggtggcacggtgctgcgcgtggccaaggacctggccga 6283503
Query: 72 gaacaaccgcggcgcgcgggtgctggtggtgtgctccgagatcacggncgtcacgttccg 131
|||||||||||||||||||||||||||||||||||| ||||||| || | | |||||
Sbjct: 6283502 gaacaaccgcggcgcgcgggtgctggtggtgtgctcggagatcatggcgatggccttccg 6283443
Query: 132 cggcccctccgagtcgcacctcgactcgctcgtgggccaggcgctgttcggcgacggcgc 191
|| || |||||||||||||||||||| ||||| || || ||||| ||||||||||||||
Sbjct: 6283442 ggggccgtccgagtcgcacctcgactccctcgtcgggcacgcgctcttcggcgacggcgc 6283383
Query: 192 ggcggccgtggtcgtgggcgccgacccggacga 224
||||| ||| |||| ||| | ||||| |||||
Sbjct: 6283382 agcggcggtgatcgtcggctctgaccccgacga 6283350
Score = 54.0 bits (27), Expect = 4e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 55 gccaaggacctcgcggagaacaaccgcggcgcgcg 89
|||||||||||||| ||||||| ||||||||||||
Sbjct: 9996187 gccaaggacctcgccgagaacagccgcggcgcgcg 9996221
Score = 52.0 bits (26), Expect = 1e-004
Identities = 58/68 (85%), Gaps = 3/68 (4%)
Strand = Plus / Plus
Query: 175 ctgttcggcgacggcgcggcggccgtggtcgtgggcgccgacccggacgaccgcgtcgag 234
|||||||||||||||||||| ||||| | || ||||||||| | ||||| |||||||
Sbjct: 9996307 ctgttcggcgacggcgcggccgccgtcattgtcggcgccgacgccgacga---cgtcgag 9996363
Query: 235 cgcccgct 242
||||||||
Sbjct: 9996364 cgcccgct 9996371
>gb|CH401221.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000058
genomic scaffold, whole genome shotgun sequence
Length = 3500188
Score = 202 bits (102), Expect = 6e-050
Identities = 185/213 (86%)
Strand = Plus / Minus
Query: 12 gtaccagcaggggtggttcgcgggcggcacggtgctgcgcgtggccaaggacctcgcgga 71
||||||||||||||| ||||| || ||||||||||||||||||||||||||||| || ||
Sbjct: 184537 gtaccagcaggggtgcttcgccggtggcacggtgctgcgcgtggccaaggacctggccga 184478
Query: 72 gaacaaccgcggcgcgcgggtgctggtggtgtgctccgagatcacggncgtcacgttccg 131
|||||||||||||||||||||||||||||||||||| ||||||| || | | |||||
Sbjct: 184477 gaacaaccgcggcgcgcgggtgctggtggtgtgctcggagatcatggcgatggccttccg 184418
Query: 132 cggcccctccgagtcgcacctcgactcgctcgtgggccaggcgctgttcggcgacggcgc 191
|| || |||||||||||||||||||| ||||| || || ||||| ||||||||||||||
Sbjct: 184417 ggggccgtccgagtcgcacctcgactccctcgtcgggcacgcgctcttcggcgacggcgc 184358
Query: 192 ggcggccgtggtcgtgggcgccgacccggacga 224
||||| ||| |||| ||| | ||||| |||||
Sbjct: 184357 agcggcggtgatcgtcggctctgaccccgacga 184325
>gb|CM000144.1| Oryza sativa (japonica cultivar-group) chromosome 7, whole genome shotgun
sequence
Length = 28626509
Score = 202 bits (102), Expect = 6e-050
Identities = 185/213 (86%)
Strand = Plus / Minus
Query: 12 gtaccagcaggggtggttcgcgggcggcacggtgctgcgcgtggccaaggacctcgcgga 71
||||||||||||||| ||||| || ||||||||||||||||||||||||||||| || ||
Sbjct: 6238162 gtaccagcaggggtgcttcgccggtggcacggtgctgcgcgtggccaaggacctggccga 6238103
Query: 72 gaacaaccgcggcgcgcgggtgctggtggtgtgctccgagatcacggncgtcacgttccg 131
|||||||||||||||||||||||||||||||||||| ||||||| || | | |||||
Sbjct: 6238102 gaacaaccgcggcgcgcgggtgctggtggtgtgctcggagatcatggcgatggccttccg 6238043
Query: 132 cggcccctccgagtcgcacctcgactcgctcgtgggccaggcgctgttcggcgacggcgc 191
|| || |||||||||||||||||||| ||||| || || ||||| ||||||||||||||
Sbjct: 6238042 ggggccgtccgagtcgcacctcgactccctcgtcgggcacgcgctcttcggcgacggcgc 6237983
Query: 192 ggcggccgtggtcgtgggcgccgacccggacga 224
||||| ||| |||| ||| | ||||| |||||
Sbjct: 6237982 agcggcggtgatcgtcggctctgaccccgacga 6237950
Score = 58.0 bits (29), Expect = 2e-006
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 45 gctgcgcgtggccaaggacctcgcggagaacaaccgcggcgcgcg 89
||||||| | |||||||||||||| ||||||| ||||||||||||
Sbjct: 19303182 gctgcgcctcgccaaggacctcgccgagaacagccgcggcgcgcg 19303138
Score = 58.0 bits (29), Expect = 2e-006
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 45 gctgcgcgtggccaaggacctcgcggagaacaaccgcggcgcgcg 89
||||||| | |||||||||||||| ||||||| ||||||||||||
Sbjct: 19281089 gctgcgcctcgccaaggacctcgccgagaacagccgcggcgcgcg 19281045
Score = 54.0 bits (27), Expect = 4e-005
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 55 gccaaggacctcgcggagaacaaccgcggcgcgcg 89
|||||||| ||||| ||||||||||||||||||||
Sbjct: 17812417 gccaaggagctcgccgagaacaaccgcggcgcgcg 17812383
Score = 54.0 bits (27), Expect = 4e-005
Identities = 64/75 (85%), Gaps = 1/75 (1%)
Strand = Plus / Minus
Query: 169 caggcgctgttcggcgacggcgcggcggccgtggtcgtgggcgccga-cccggacgaccg 227
||||||||||||||||||||| ||| ||||| |||| |||||||| ||||| || |
Sbjct: 17812303 caggcgctgttcggcgacggctcgggcgccgtcatcgtcggcgccgaccccggtcggcgc 17812244
Query: 228 cgtcgagcgcccgct 242
|||||||||||||||
Sbjct: 17812243 cgtcgagcgcccgct 17812229
Score = 52.0 bits (26), Expect = 1e-004
Identities = 58/68 (85%), Gaps = 3/68 (4%)
Strand = Plus / Plus
Query: 175 ctgttcggcgacggcgcggcggccgtggtcgtgggcgccgacccggacgaccgcgtcgag 234
|||||||||||||||||||| ||||| | || ||||||||| | ||||| |||||||
Sbjct: 9930034 ctgttcggcgacggcgcggccgccgtcattgtcggcgccgacgccgacga---cgtcgag 9930090
Query: 235 cgcccgct 242
||||||||
Sbjct: 9930091 cgcccgct 9930098
Score = 50.1 bits (25), Expect = 6e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 167 gccaggcgctgttcggcgacggcgc 191
|||||||||||||||||||||||||
Sbjct: 19303066 gccaggcgctgttcggcgacggcgc 19303042
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
sequence
Length = 29644043
Score = 202 bits (102), Expect = 6e-050
Identities = 185/213 (86%)
Strand = Plus / Minus
Query: 12 gtaccagcaggggtggttcgcgggcggcacggtgctgcgcgtggccaaggacctcgcgga 71
||||||||||||||| ||||| || ||||||||||||||||||||||||||||| || ||
Sbjct: 6327490 gtaccagcaggggtgcttcgccggtggcacggtgctgcgcgtggccaaggacctggccga 6327431
Query: 72 gaacaaccgcggcgcgcgggtgctggtggtgtgctccgagatcacggncgtcacgttccg 131
|||||||||||||||||||||||||||||||||||| ||||||| || | | |||||
Sbjct: 6327430 gaacaaccgcggcgcgcgggtgctggtggtgtgctcggagatcatggcgatggccttccg 6327371
Query: 132 cggcccctccgagtcgcacctcgactcgctcgtgggccaggcgctgttcggcgacggcgc 191
|| || |||||||||||||||||||| ||||| || || ||||| ||||||||||||||
Sbjct: 6327370 ggggccgtccgagtcgcacctcgactccctcgtcgggcacgcgctcttcggcgacggcgc 6327311
Query: 192 ggcggccgtggtcgtgggcgccgacccggacga 224
||||| ||| |||| ||| | ||||| |||||
Sbjct: 6327310 agcggcggtgatcgtcggctctgaccccgacga 6327278
Score = 67.9 bits (34), Expect = 2e-009
Identities = 64/74 (86%)
Strand = Plus / Minus
Query: 169 caggcgctgttcggcgacggcgcggcggccgtggtcgtgggcgccgacccggacgaccgc 228
||||||||||||||||||||| ||| ||||| |||| ||||||||||||| || | |
Sbjct: 18821093 caggcgctgttcggcgacggctcgggcgccgtcatcgtcggcgccgacccggtcggcgcc 18821034
Query: 229 gtcgagcgcccgct 242
||||||||||||||
Sbjct: 18821033 gtcgagcgcccgct 18821020
Score = 61.9 bits (31), Expect = 1e-007
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 172 gcgctgttcggcgacggcgcggcggccgtggtcgtgggcgccgacccggacgaccgcgtc 231
|||||||||||||||||| ||| ||||| |||| ||||||||||||| |||| |||
Sbjct: 18799429 gcgctgttcggcgacggctcgggcgccgtcatcgtcggcgccgacccggtcgacgccgtg 18799370
Query: 232 gagcgcccgct 242
|||||||||||
Sbjct: 18799369 gagcgcccgct 18799359
Score = 58.0 bits (29), Expect = 2e-006
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 45 gctgcgcgtggccaaggacctcgcggagaacaaccgcggcgcgcg 89
||||||| | |||||||||||||| ||||||| ||||||||||||
Sbjct: 20452108 gctgcgcctcgccaaggacctcgccgagaacagccgcggcgcgcg 20452064
Score = 58.0 bits (29), Expect = 2e-006
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 45 gctgcgcgtggccaaggacctcgcggagaacaaccgcggcgcgcg 89
||||||| | |||||||||||||| ||||||| ||||||||||||
Sbjct: 20402599 gctgcgcctcgccaaggacctcgccgagaacagccgcggcgcgcg 20402555
Score = 58.0 bits (29), Expect = 2e-006
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 45 gctgcgcgtggccaaggacctcgcggagaacaaccgcggcgcgcg 89
||||||| | |||||||||||||| ||||||| ||||||||||||
Sbjct: 20367231 gctgcgcctcgccaaggacctcgccgagaacagccgcggcgcgcg 20367187
Score = 54.0 bits (27), Expect = 4e-005
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 55 gccaaggacctcgcggagaacaaccgcggcgcgcg 89
|||||||| ||||| ||||||||||||||||||||
Sbjct: 18821207 gccaaggagctcgccgagaacaaccgcggcgcgcg 18821173
Score = 54.0 bits (27), Expect = 4e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 55 gccaaggacctcgcggagaacaaccgcggcgcgcg 89
|||||||||||||| ||||||| ||||||||||||
Sbjct: 10051932 gccaaggacctcgccgagaacagccgcggcgcgcg 10051966
Score = 52.0 bits (26), Expect = 1e-004
Identities = 58/68 (85%), Gaps = 3/68 (4%)
Strand = Plus / Plus
Query: 175 ctgttcggcgacggcgcggcggccgtggtcgtgggcgccgacccggacgaccgcgtcgag 234
|||||||||||||||||||| ||||| | || ||||||||| | ||||| |||||||
Sbjct: 10052052 ctgttcggcgacggcgcggccgccgtcattgtcggcgccgacgccgacga---cgtcgag 10052108
Query: 235 cgcccgct 242
||||||||
Sbjct: 10052109 cgcccgct 10052116
Score = 50.1 bits (25), Expect = 6e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 167 gccaggcgctgttcggcgacggcgc 191
|||||||||||||||||||||||||
Sbjct: 20451992 gccaggcgctgttcggcgacggcgc 20451968
Score = 50.1 bits (25), Expect = 6e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 167 gccaggcgctgttcggcgacggcgc 191
|||||||||||||||||||||||||
Sbjct: 20402483 gccaggcgctgttcggcgacggcgc 20402459
Score = 50.1 bits (25), Expect = 6e-004
Identities = 52/61 (85%)
Strand = Plus / Minus
Query: 55 gccaaggacctcgcggagaacaaccgcggcgcgcgggtgctggtggtgtgctccgagatc 114
|||||||| ||||| |||||||||||||| ||||| || || || | ||||||||||||
Sbjct: 18799552 gccaaggaactcgccgagaacaaccgcggtgcgcgcgtcctcgtcgcctgctccgagatc 18799493
Query: 115 a 115
|
Sbjct: 18799492 a 18799492
>gb|CB659248.1|CB659248 OSJNEc16B06.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc16B06 5', mRNA sequence
Length = 707
Score = 196 bits (99), Expect = 4e-048
Identities = 164/186 (88%)
Strand = Plus / Plus
Query: 12 gtaccagcaggggtggttcgcgggcggcacggtgctgcgcgtggccaaggacctcgcgga 71
||||||||||||||| ||||| |||||||||||||| ||||| |||||||||||||| ||
Sbjct: 516 gtaccagcaggggtgcttcgccggcggcacggtgctccgcgtcgccaaggacctcgccga 575
Query: 72 gaacaaccgcggcgcgcgggtgctggtggtgtgctccgagatcacggncgtcacgttccg 131
|||||||||||||||||| || || | ||||||||||||||||||| || ||||||||
Sbjct: 576 gaacaaccgcggcgcgcgcgtcctcgccgtgtgctccgagatcacggcggtgacgttccg 635
Query: 132 cggcccctccgagtcgcacctcgactcgctcgtgggccaggcgctgttcggcgacggcgc 191
|| ||||||||||| ||||||||||| | || || |||||||||||||||||| ||||
Sbjct: 636 ggggccctccgagtcccacctcgactccatggtcgggcaggcgctgttcggcgactgcgc 695
Query: 192 ggcggc 197
||||||
Sbjct: 696 ggcggc 701
>gb|CB643204.1|CB643204 OSJNEb03M07.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb03M07 5', mRNA sequence
Length = 796
Score = 167 bits (84), Expect = 3e-039
Identities = 131/147 (89%)
Strand = Plus / Plus
Query: 12 gtaccagcaggggtggttcgcgggcggcacggtgctgcgcgtggccaaggacctcgcgga 71
||||||||||||||| ||||| |||||||||||||| ||||| |||||||||||||| ||
Sbjct: 646 gtaccagcaggggtgcttcgccggcggcacggtgctccgcgtcgccaaggacctcgccga 705
Query: 72 gaacaaccgcggcgcgcgggtgctggtggtgtgctccgagatcacggncgtcacgttccg 131
|||||||||||||||||| || || | ||||||||||||||||||| || ||||||||
Sbjct: 706 gaacaaccgcggcgcgcgcgtcctcgccgtgtgctccgagatcacggcggtgacgttccg 765
Query: 132 cggcccctccgagtcgcacctcgactc 158
|| ||||||||||| |||||||||||
Sbjct: 766 ggggccctccgagtcccacctcgactc 792
>gb|CB656852.1|CB656852 OSJNEc11K09.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc11K09 5', mRNA sequence
Length = 773
Score = 159 bits (80), Expect = 8e-037
Identities = 131/147 (89%), Gaps = 1/147 (0%)
Strand = Plus / Plus
Query: 12 gtaccagcaggggtggttcgcgggcggcacggtgctgcgcgtggccaaggacctcgcgga 71
||||||||||||||| ||||| |||||||||||||| ||||| |||||||||||||| ||
Sbjct: 627 gtaccagcaggggtgcttcgccggcggcacggtgctccgcgtcgccaaggacctcgccga 686
Query: 72 gaacaaccgcggcgcgcgggtgctggtggtgtgctccgagatcacggncgtcacgttccg 131
|||||||||||||||||| || || | ||||||||||||||||||| || ||||||||
Sbjct: 687 gaacaaccgcggcgcgcgcgtcctcgccgtgtgctccgagatcacggcggtgacgttccg 746
Query: 132 cggcccctccgagtcgcacctcgactc 158
|| ||||||||||| |||||||||||
Sbjct: 747 ggggccctccgagtc-cacctcgactc 772
>gb|CB655646.1|CB655646 OSJNEc09E07.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc09E07 5', mRNA sequence
Length = 778
Score = 155 bits (78), Expect = 1e-035
Identities = 125/141 (88%)
Strand = Plus / Plus
Query: 12 gtaccagcaggggtggttcgcgggcggcacggtgctgcgcgtggccaaggacctcgcgga 71
||||||||||||||| ||||| |||||||||||||| ||||| |||||||||||||| ||
Sbjct: 638 gtaccagcaggggtgcttcgccggcggcacggtgctccgcgtcgccaaggacctcgccga 697
Query: 72 gaacaaccgcggcgcgcgggtgctggtggtgtgctccgagatcacggncgtcacgttccg 131
|||||||||||||||||| || || | ||||||||||||||||||| || ||||||||
Sbjct: 698 gaacaaccgcggcgcgcgcgtcctcgccgtgtgctccgagatcacggcggtgacgttccg 757
Query: 132 cggcccctccgagtcgcacct 152
|| ||||||||||| |||||
Sbjct: 758 ggggccctccgagtcccacct 778
>gb|CB650191.1|CB650191 OSJNEb14I06.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb14I06 5', mRNA sequence
Length = 760
Score = 143 bits (72), Expect = 5e-032
Identities = 116/131 (88%)
Strand = Plus / Plus
Query: 12 gtaccagcaggggtggttcgcgggcggcacggtgctgcgcgtggccaaggacctcgcgga 71
||||||||||||||| ||||| |||||||||||||| ||||| |||||||||||||| ||
Sbjct: 630 gtaccagcaggggtgcttcgccggcggcacggtgctccgcgtcgccaaggacctcgccga 689
Query: 72 gaacaaccgcggcgcgcgggtgctggtggtgtgctccgagatcacggncgtcacgttccg 131
|||||||||||||||||| || || | ||||||||||||||||||| || ||||||||
Sbjct: 690 gaacaaccgcggcgcgcgcgtcctcgccgtgtgctccgagatcacggcggtgacgttccg 749
Query: 132 cggcccctccg 142
|| |||||||
Sbjct: 750 ggggccctccg 760
>gb|CB642954.1|CB642954 OSJNEb03G07.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb03G07 5', mRNA sequence
Length = 774
Score = 139 bits (70), Expect = 8e-031
Identities = 114/129 (88%)
Strand = Plus / Plus
Query: 12 gtaccagcaggggtggttcgcgggcggcacggtgctgcgcgtggccaaggacctcgcgga 71
||||||||||||||| ||||| |||||||||||||| ||||| |||||||||||||| ||
Sbjct: 646 gtaccagcaggggtgcttcgccggcggcacggtgctccgcgtcgccaaggacctcgccga 705
Query: 72 gaacaaccgcggcgcgcgggtgctggtggtgtgctccgagatcacggncgtcacgttccg 131
|||||||||||||||||| || || | ||||||||||||||||||| || ||||||||
Sbjct: 706 gaacaaccgcggcgcgcgcgtcctcgccgtgtgctccgagatcacggcggtgacgttccg 765
Query: 132 cggcccctc 140
|| |||||
Sbjct: 766 ggggccctc 774
>gb|CB645689.1|CB645689 OSJNEb07J04.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb07J04 5', mRNA sequence
Length = 779
Score = 137 bits (69), Expect = 3e-030
Identities = 107/120 (89%)
Strand = Plus / Plus
Query: 12 gtaccagcaggggtggttcgcgggcggcacggtgctgcgcgtggccaaggacctcgcgga 71
||||||||||||||| ||||| |||||||||||||| ||||| |||||||||||||| ||
Sbjct: 650 gtaccagcaggggtgcttcgccggcggcacggtgctccgcgtcgccaaggacctcgccga 709
Query: 72 gaacaaccgcggcgcgcgggtgctggtggtgtgctccgagatcacggncgtcacgttccg 131
|||||||||||||||||| || || | ||||||||||||||||||| || ||||||||
Sbjct: 710 gaacaaccgcggcgcgcgcgtcctcgccgtgtgctccgagatcacggcggtgacgttccg 769
>gb|CB648534.1|CB648534 OSJNEb11P09.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb11P09 5', mRNA sequence
Length = 731
Score = 137 bits (69), Expect = 3e-030
Identities = 107/120 (89%)
Strand = Plus / Plus
Query: 12 gtaccagcaggggtggttcgcgggcggcacggtgctgcgcgtggccaaggacctcgcgga 71
||||||||||||||| ||||| |||||||||||||| ||||| |||||||||||||| ||
Sbjct: 605 gtaccagcaggggtgcttcgccggcggcacggtgctccgcgtcgccaaggacctcgccga 664
Query: 72 gaacaaccgcggcgcgcgggtgctggtggtgtgctccgagatcacggncgtcacgttccg 131
|||||||||||||||||| || || | ||||||||||||||||||| || ||||||||
Sbjct: 665 gaacaaccgcggcgcgcgcgtcctcgccgtgtgctccgagatcacggcggtgacgttccg 724
>gb|CB674572.1|CB674572 OSJNEe09K22.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe09K22 5', mRNA sequence
Length = 770
Score = 137 bits (69), Expect = 3e-030
Identities = 107/120 (89%)
Strand = Plus / Plus
Query: 12 gtaccagcaggggtggttcgcgggcggcacggtgctgcgcgtggccaaggacctcgcgga 71
||||||||||||||| ||||| |||||||||||||| ||||| |||||||||||||| ||
Sbjct: 643 gtaccagcaggggtgcttcgccggcggcacggtgctccgcgtcgccaaggacctcgccga 702
Query: 72 gaacaaccgcggcgcgcgggtgctggtggtgtgctccgagatcacggncgtcacgttccg 131
|||||||||||||||||| || || | ||||||||||||||||||| || ||||||||
Sbjct: 703 gaacaaccgcggcgcgcgcgtcctcgccgtgtgctccgagatcacggcggtgacgttccg 762
>gb|CB644310.1|CB644310 OSJNEb05H09.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb05H09 5', mRNA sequence
Length = 744
Score = 115 bits (58), Expect = 1e-023
Identities = 88/98 (89%)
Strand = Plus / Plus
Query: 12 gtaccagcaggggtggttcgcgggcggcacggtgctgcgcgtggccaaggacctcgcgga 71
||||||||||||||| ||||| |||||||||||||| ||||| |||||||||||||| ||
Sbjct: 647 gtaccagcaggggtgcttcgccggcggcacggtgctccgcgtcgccaaggacctcgccga 706
Query: 72 gaacaaccgcggcgcgcgggtgctggtggtgtgctccg 109
|||||||||||||||||| || || | ||||||||||
Sbjct: 707 gaacaaccgcggcgcgcgcgtcctcgccgtgtgctccg 744
>gb|CB646507.1|CB646507 OSJNEb09A17.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb09A17 5', mRNA sequence
Length = 730
Score = 115 bits (58), Expect = 1e-023
Identities = 73/78 (93%)
Strand = Plus / Plus
Query: 12 gtaccagcaggggtggttcgcgggcggcacggtgctgcgcgtggccaaggacctcgcgga 71
||||||||||||||| ||||| |||||||||||||| ||||| |||||||||||||| ||
Sbjct: 647 gtaccagcaggggtgcttcgccggcggcacggtgctccgcgtcgccaaggacctcgccga 706
Query: 72 gaacaaccgcggcgcgcg 89
||||||||||||||||||
Sbjct: 707 gaacaaccgcggcgcgcg 724
>gb|CB649065.1|CB649065 OSJNEb12M18.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb12M18 5', mRNA sequence
Length = 728
Score = 115 bits (58), Expect = 1e-023
Identities = 73/78 (93%)
Strand = Plus / Plus
Query: 12 gtaccagcaggggtggttcgcgggcggcacggtgctgcgcgtggccaaggacctcgcgga 71
||||||||||||||| ||||| |||||||||||||| ||||| |||||||||||||| ||
Sbjct: 645 gtaccagcaggggtgcttcgccggcggcacggtgctccgcgtcgccaaggacctcgccga 704
Query: 72 gaacaaccgcggcgcgcg 89
||||||||||||||||||
Sbjct: 705 gaacaaccgcggcgcgcg 722
>gb|CB652860.1|CB652860 OSJNEc03E22.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc03E22 5', mRNA sequence
Length = 736
Score = 115 bits (58), Expect = 1e-023
Identities = 73/78 (93%)
Strand = Plus / Plus
Query: 12 gtaccagcaggggtggttcgcgggcggcacggtgctgcgcgtggccaaggacctcgcgga 71
||||||||||||||| ||||| |||||||||||||| ||||| |||||||||||||| ||
Sbjct: 653 gtaccagcaggggtgcttcgccggcggcacggtgctccgcgtcgccaaggacctcgccga 712
Query: 72 gaacaaccgcggcgcgcg 89
||||||||||||||||||
Sbjct: 713 gaacaaccgcggcgcgcg 730
>gb|CB653142.1|CB653142 OSJNEc03O04.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc03O04 5', mRNA sequence
Length = 723
Score = 115 bits (58), Expect = 1e-023
Identities = 73/78 (93%)
Strand = Plus / Plus
Query: 12 gtaccagcaggggtggttcgcgggcggcacggtgctgcgcgtggccaaggacctcgcgga 71
||||||||||||||| ||||| |||||||||||||| ||||| |||||||||||||| ||
Sbjct: 646 gtaccagcaggggtgcttcgccggcggcacggtgctccgcgtcgccaaggacctcgccga 705
Query: 72 gaacaaccgcggcgcgcg 89
||||||||||||||||||
Sbjct: 706 gaacaaccgcggcgcgcg 723
>gb|CB677917.1|CB677917 OSJNEe15F21.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe15F21 5', mRNA sequence
Length = 744
Score = 115 bits (58), Expect = 1e-023
Identities = 73/78 (93%)
Strand = Plus / Plus
Query: 12 gtaccagcaggggtggttcgcgggcggcacggtgctgcgcgtggccaaggacctcgcgga 71
||||||||||||||| ||||| |||||||||||||| ||||| |||||||||||||| ||
Sbjct: 650 gtaccagcaggggtgcttcgccggcggcacggtgctccgcgtcgccaaggacctcgccga 709
Query: 72 gaacaaccgcggcgcgcg 89
||||||||||||||||||
Sbjct: 710 gaacaaccgcggcgcgcg 727
>gb|CB678203.1|CB678203 OSJNEe15N18.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe15N18 5', mRNA sequence
Length = 657
Score = 115 bits (58), Expect = 1e-023
Identities = 73/78 (93%)
Strand = Plus / Plus
Query: 12 gtaccagcaggggtggttcgcgggcggcacggtgctgcgcgtggccaaggacctcgcgga 71
||||||||||||||| ||||| |||||||||||||| ||||| |||||||||||||| ||
Sbjct: 577 gtaccagcaggggtgcttcgccggcggcacggtgctccgcgtcgccaaggacctcgccga 636
Query: 72 gaacaaccgcggcgcgcg 89
||||||||||||||||||
Sbjct: 637 gaacaaccgcggcgcgcg 654
>gb|CB653359.1|CB653359 OSJNEc04F05.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc04F05 5', mRNA sequence
Length = 739
Score = 107 bits (54), Expect = 3e-021
Identities = 72/78 (92%)
Strand = Plus / Plus
Query: 12 gtaccagcaggggtggttcgcgggcggcacggtgctgcgcgtggccaaggacctcgcgga 71
||||||||||||||| ||||| |||||||||||||| ||||| ||||||||||||| ||
Sbjct: 642 gtaccagcaggggtgcttcgccggcggcacggtgctccgcgtctccaaggacctcgccga 701
Query: 72 gaacaaccgcggcgcgcg 89
||||||||||||||||||
Sbjct: 702 gaacaaccgcggcgcgcg 719
>gb|CB684667.1|CB684667 OSJNEf14G16.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf14G16 5', mRNA sequence
Length = 741
Score = 107 bits (54), Expect = 3e-021
Identities = 72/78 (92%)
Strand = Plus / Plus
Query: 12 gtaccagcaggggtggttcgcgggcggcacggtgctgcgcgtggccaaggacctcgcgga 71
||||||||||||||| ||||| |||||||||||||| ||||| ||||||||||| || ||
Sbjct: 647 gtaccagcaggggtgcttcgccggcggcacggtgctccgcgtcgccaaggaccttgccga 706
Query: 72 gaacaaccgcggcgcgcg 89
||||||||||||||||||
Sbjct: 707 gaacaaccgcggcgcgcg 724
>dbj|AP003278.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0518F01
Length = 154541
Score = 75.8 bits (38), Expect = 1e-011
Identities = 56/62 (90%)
Strand = Plus / Minus
Query: 46 ctgcgcgtggccaaggacctcgcggagaacaaccgcggcgcgcgggtgctggtggtgtgc 105
|||||| | |||||||||||||| ||||||| || ||||||||||||||||||||| |||
Sbjct: 147803 ctgcgcctcgccaaggacctcgccgagaacagccccggcgcgcgggtgctggtggtctgc 147744
Query: 106 tc 107
||
Sbjct: 147743 tc 147742
>gb|AACV01001773.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg001773, whole
genome shotgun sequence
Length = 63168
Score = 75.8 bits (38), Expect = 1e-011
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 46 ctgcgcgtggccaaggacctcgcggagaacaaccgcggcgcgcgggtgctggtggtgtgc 105
|||||| | |||||||||||||| ||||||| || ||||||||||||||||||||| |||
Sbjct: 12114 ctgcgcctcgccaaggacctcgccgagaacagccccggcgcgcgggtgctggtggtctgc 12173
Query: 106 tc 107
||
Sbjct: 12174 tc 12175
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 75.8 bits (38), Expect = 1e-011
Identities = 56/62 (90%)
Strand = Plus / Minus
Query: 46 ctgcgcgtggccaaggacctcgcggagaacaaccgcggcgcgcgggtgctggtggtgtgc 105
|||||| | |||||||||||||| ||||||| || ||||||||||||||||||||| |||
Sbjct: 23763821 ctgcgcctcgccaaggacctcgccgagaacagccccggcgcgcgggtgctggtggtctgc 23763762
Query: 106 tc 107
||
Sbjct: 23763761 tc 23763760
>ref|NM_192650.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1434
Score = 75.8 bits (38), Expect = 1e-011
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 46 ctgcgcgtggccaaggacctcgcggagaacaaccgcggcgcgcgggtgctggtggtgtgc 105
|||||| | |||||||||||||| ||||||| || ||||||||||||||||||||| |||
Sbjct: 730 ctgcgcctcgccaaggacctcgccgagaacagccccggcgcgcgggtgctggtggtctgc 789
Query: 106 tc 107
||
Sbjct: 790 tc 791
>ref|NT_079926.2| Oryza sativa (japonica cultivar-group)
Length = 8469246
Score = 75.8 bits (38), Expect = 1e-011
Identities = 56/62 (90%)
Strand = Plus / Minus
Query: 46 ctgcgcgtggccaaggacctcgcggagaacaaccgcggcgcgcgggtgctggtggtgtgc 105
|||||| | |||||||||||||| ||||||| || ||||||||||||||||||||| |||
Sbjct: 6682053 ctgcgcctcgccaaggacctcgccgagaacagccccggcgcgcgggtgctggtggtctgc 6681994
Query: 106 tc 107
||
Sbjct: 6681993 tc 6681992
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 501,115
Number of Sequences: 438736
Number of extensions: 501115
Number of successful extensions: 19720
Number of sequences better than 0.5: 121
Number of HSP's better than 0.5 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18226
Number of HSP's gapped (non-prelim): 1478
length of query: 252
length of database: 2,800,419,916
effective HSP length: 20
effective length of query: 232
effective length of database: 2,791,645,196
effective search space: 647661685472
effective search space used: 647661685472
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)