BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3802485.2.1
(1118 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|NM_184213.2| Oryza sativa (japonica cultivar-group), mRNA 737 0.0
dbj|AK121214.1| Oryza sativa (japonica cultivar-group) cDNA... 729 0.0
gb|CB650282.1|CB650282 OSJNEb14K11.f OSJNEb Oryza sativa (j... 535 e-149
gb|CB650242.1|CB650242 OSJNEb14J13.f OSJNEb Oryza sativa (j... 476 e-131
dbj|AK059332.1| Oryza sativa (japonica cultivar-group) cDNA... 389 e-105
gb|C26485.1|C26485 C26485 Rice callus cDNA Oryza sativa (ja... 230 1e-057
dbj|AP002538.2| Oryza sativa (japonica cultivar-group) geno... 167 2e-038
gb|AACV01000125.1| Oryza sativa (japonica cultivar-group) c... 167 2e-038
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 167 2e-038
ref|NT_036312.3| Oryza sativa (japonica cultivar-group) 167 2e-038
gb|CH401164.1| Oryza sativa (japonica cultivar-group) chrom... 167 2e-038
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 167 2e-038
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 167 2e-038
gb|AU097610.1|AU097610 AU097610 Rice callus Oryza sativa (j... 145 6e-032
gb|CB653647.1|CB653647 OSJNEc04O03.f OSJNEc Oryza sativa (j... 80 3e-012
gb|CB676071.1|CB676071 OSJNEe12C01.f OSJNEe Oryza sativa (j... 80 3e-012
gb|AQ158649.1|AQ158649 nbxb0011L22r CUGI Rice BAC Library O... 68 1e-008
>ref|NM_184213.2| Oryza sativa (japonica cultivar-group), mRNA
Length = 2244
Score = 737 bits (372), Expect = 0.0
Identities = 816/965 (84%)
Strand = Plus / Plus
Query: 4 gatctcgtcatcatacgagaatcaacaggacattcaactcatgaggtttgctgattactt 63
||||||| ||| |||||||| || ||||| ||||| |||||| |||| || || |||||
Sbjct: 524 gatctcggaatcttacgagaaccagcaggatattcagctcatgcggttcgccgactactt 583
Query: 64 tggccgggcatttgtagctgtaagcgcatcccaatttgcatgggcaaagatgttcaagga 123
|||| || |||||| | || ||||| |||| || | ||||| ||||||||||||||
Sbjct: 584 tggcaggtcatttgcaagcgtgagcgccgcccagttcccctgggcgaagatgttcaagga 643
Query: 124 atcaacagtgtctaagatggttgacatcccactgtgccatattcctgaggctgtcatcaa 183
|||| |||||| ||||||||||| || || |||||||||||||||| | || |||
Sbjct: 644 atcactagtgtccaagatggttgatattcccttgtgccatattcctgaaccagttcgcaa 703
Query: 184 gactgcgagtgattggatcagtcaaagatcttctgatgccctgggagactttgttttgtg 243
|| |||||||| ||||||| ||| |||||| |||||||||||||||||||||| ||||
Sbjct: 704 cacagcgagtgactggatcaatcagagatctcctgatgccctgggagactttgtcatgtg 763
Query: 244 gtgtatagatagcatcatgtctgaattgtcaggtccatcagctggccctaagggttcaaa 303
||| ||||| ||||||||||||||| ||||||||| | ||| ||| |||||||||||||
Sbjct: 764 gtgcatagacagcatcatgtctgaactgtcaggtcaagcagtaggcgctaagggttcaaa 823
Query: 304 gaaggttgcacaacagtctccaagggcccaggttgcaatctttgttgttcttgccatgac 363
||||| ||||| || |||||||||||||||||||||| |||||||| |||||| ||||
Sbjct: 824 gaaggccgcacagcaaactccaagggcccaggttgcaatatttgttgtgcttgccttgac 883
Query: 364 tttaagaagaaagcctgatgtactggtaaatgttatgccaaagataatgggaaacaataa 423
| ||||||| || || || ||||| ||| || ||||||| |||||||||||||||||
Sbjct: 884 tgtaagaaggaaaccagaggtactaacaaacgtcctgccaaaaataatgggaaacaataa 943
Query: 424 atatctgggacaggaaaagcttcccatcattgtctgggttattgctcaggcctctcaagg 483
||||| || |||||||||||||| |||||||| ||||||||||||||||| ||||||||
Sbjct: 944 gtatcttgggcaggaaaagcttccaatcattgtttgggttattgctcaggcatctcaagg 1003
Query: 484 tgacctagtgtctggcatgttttgctgggctcattctctatttcccacattatgtgcgaa 543
|||||||||| |||| |||||||| |||||||||| || ||||||||| | ||||| ||
Sbjct: 1004 tgacctagtgactggaatgttttgttgggctcatttcctgtttcccacactgtgtgctaa 1063
Query: 544 gtcaagtgggaatccccttgcaagagatttggttttgcagttgcttgaaagaattttgtc 603
| ||||||||||||||| | |||||||| ||| |||||||||| ||||||||||||||
Sbjct: 1064 gccaagtgggaatccccagacgagagatttagttctgcagttgctcgaaagaattttgtc 1123
Query: 604 tgtcaccaaagctcgttctatattattgaatggtgctgttagaaagggagaacgcttagt 663
|| | |||||||||| || ||| |||||||||||||||||||||| |||||| | |
Sbjct: 1124 tgcccccaaagctcgaggcatcttactgaatggtgctgttagaaagggggaacgcctgat 1183
Query: 664 tccccctgtttcatttgacttgttcatgagagccacatttcctgtttctaatgctcgagt 723
|||||||||| ||||||| ||||||||||||| ||||||||||||| | ||||| ||
Sbjct: 1184 tccccctgttacatttgatctgttcatgagagctgcatttcctgtttccagcgctcgtgt 1243
Query: 724 gaaggctacagaaaggtttgaagcagcctacccaatgatcaaggagttggctcttgccgg 783
||||||||||| |||||||||||||||||||||| |||||||||||||| ||||| ||
Sbjct: 1244 aaaggctacagagaggtttgaagcagcctacccaacaatcaaggagttggcccttgctgg 1303
Query: 784 tcctcctggctcaaaaactgtgaaacaagcatcacaacagcttttacctttgtgtgcaaa 843
|||||||||||||||||| |||||||||||| |||| |||||||| || ||||||| ||
Sbjct: 1304 tcctcctggctcaaaaaccgtgaaacaagcagcacagcagcttttgccattgtgtgtgaa 1363
Query: 844 agcaatgcaagaaaacaacgcagagctcaccagggaggctgttgatgttttcatttggtg 903
||||||||||||||| |||||||| |||||| ||||| ||| || ||| |||||||||||
Sbjct: 1364 agcaatgcaagaaaataacgcagacctcaccggggagtctgctggtgtattcatttggtg 1423
Query: 904 cttaactcaaaatgcagagtcgtacaagcannnggaaagaatttatcttgaaaatattga 963
| | ||||||||||||||||| ||||||| ||||||| || ||| ||||||| ||||
Sbjct: 1424 cctgactcaaaatgcagagtcctacaagctgtgggaaagacttcatcctgaaaatgttga 1483
Query: 964 agcca 968
|||||
Sbjct: 1484 agcca 1488
>dbj|AK121214.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023089M05, full
insert sequence
Length = 2247
Score = 729 bits (368), Expect = 0.0
Identities = 815/965 (84%)
Strand = Plus / Plus
Query: 4 gatctcgtcatcatacgagaatcaacaggacattcaactcatgaggtttgctgattactt 63
||||||| ||| |||||||| || ||||| ||||| |||||| |||| || || |||||
Sbjct: 526 gatctcggaatcttacgagaaccagcaggatattcagctcatgcggttcgccgactactt 585
Query: 64 tggccgggcatttgtagctgtaagcgcatcccaatttgcatgggcaaagatgttcaagga 123
|||| || |||||| | || ||||| |||| || | ||||| ||||||||||||||
Sbjct: 586 tggcaggtcatttgcaagcgtgagcgccgcccagttcccctgggcgaagatgttcaagga 645
Query: 124 atcaacagtgtctaagatggttgacatcccactgtgccatattcctgaggctgtcatcaa 183
|||| |||||| ||||||||||| || || |||||||||||||||| | || |||
Sbjct: 646 atcactagtgtccaagatggttgatattcccttgtgccatattcctgaaccagttcgcaa 705
Query: 184 gactgcgagtgattggatcagtcaaagatcttctgatgccctgggagactttgttttgtg 243
|| |||||||| ||||||| ||| |||||| |||||||||||||||||||||| ||||
Sbjct: 706 cacagcgagtgactggatcaatcagagatctcctgatgccctgggagactttgtcatgtg 765
Query: 244 gtgtatagatagcatcatgtctgaattgtcaggtccatcagctggccctaagggttcaaa 303
||| ||||| ||||||||||||||| ||||||||| | ||| ||| |||||||||||||
Sbjct: 766 gtgcatagacagcatcatgtctgaactgtcaggtcaagcagtaggcgctaagggttcaaa 825
Query: 304 gaaggttgcacaacagtctccaagggcccaggttgcaatctttgttgttcttgccatgac 363
||||| ||||| || |||||||||||||||||||||| |||||||| |||||| ||||
Sbjct: 826 gaaggccgcacagcaaactccaagggcccaggttgcaatatttgttgtgcttgccttgac 885
Query: 364 tttaagaagaaagcctgatgtactggtaaatgttatgccaaagataatgggaaacaataa 423
| ||||||| || || || ||||| ||| || ||||||| |||||||||||||||||
Sbjct: 886 tgtaagaaggaaaccagaggtactaacaaacgtcctgccaaaaataatgggaaacaataa 945
Query: 424 atatctgggacaggaaaagcttcccatcattgtctgggttattgctcaggcctctcaagg 483
||||| || |||||||||||||| |||||||| ||||||||||||||||| ||||||||
Sbjct: 946 gtatcttgggcaggaaaagcttccaatcattgtttgggttattgctcaggcatctcaagg 1005
Query: 484 tgacctagtgtctggcatgttttgctgggctcattctctatttcccacattatgtgcgaa 543
||||||||| |||| |||||||| |||||||||| || ||||||||| | ||||| ||
Sbjct: 1006 tgacctagttactggaatgttttgttgggctcatttcctgtttcccacactgtgtgctaa 1065
Query: 544 gtcaagtgggaatccccttgcaagagatttggttttgcagttgcttgaaagaattttgtc 603
| ||||||||||||||| | |||||||| ||| |||||||||| ||||||||||||||
Sbjct: 1066 gccaagtgggaatccccagacgagagatttagttctgcagttgctcgaaagaattttgtc 1125
Query: 604 tgtcaccaaagctcgttctatattattgaatggtgctgttagaaagggagaacgcttagt 663
|| | |||||||||| || ||| |||||||||||||||||||||| |||||| | |
Sbjct: 1126 tgcccccaaagctcgaggcatcttactgaatggtgctgttagaaagggggaacgcctgat 1185
Query: 664 tccccctgtttcatttgacttgttcatgagagccacatttcctgtttctaatgctcgagt 723
|||||||||| ||||||| ||||||||||||| ||||||||||||| | ||||| ||
Sbjct: 1186 tccccctgttacatttgatctgttcatgagagctgcatttcctgtttccagcgctcgtgt 1245
Query: 724 gaaggctacagaaaggtttgaagcagcctacccaatgatcaaggagttggctcttgccgg 783
||||||||||| |||||||||||||||||||||| |||||||||||||| ||||| ||
Sbjct: 1246 aaaggctacagagaggtttgaagcagcctacccaacaatcaaggagttggcccttgctgg 1305
Query: 784 tcctcctggctcaaaaactgtgaaacaagcatcacaacagcttttacctttgtgtgcaaa 843
|||||||||||||||||| |||||||||||| |||| |||||||| || ||||||| ||
Sbjct: 1306 tcctcctggctcaaaaaccgtgaaacaagcagcacagcagcttttgccattgtgtgtgaa 1365
Query: 844 agcaatgcaagaaaacaacgcagagctcaccagggaggctgttgatgttttcatttggtg 903
||||||||||||||| |||||||| |||||| ||||| ||| || ||| |||||||||||
Sbjct: 1366 agcaatgcaagaaaataacgcagacctcaccggggagtctgctggtgtattcatttggtg 1425
Query: 904 cttaactcaaaatgcagagtcgtacaagcannnggaaagaatttatcttgaaaatattga 963
| | ||||||||||||||||| ||||||| ||||||| || ||| ||||||| ||||
Sbjct: 1426 cctgactcaaaatgcagagtcctacaagctgtgggaaagacttcatcctgaaaatgttga 1485
Query: 964 agcca 968
|||||
Sbjct: 1486 agcca 1490
>gb|CB650282.1|CB650282 OSJNEb14K11.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb14K11 5', mRNA sequence
Length = 842
Score = 535 bits (270), Expect = e-149
Identities = 630/750 (84%)
Strand = Plus / Plus
Query: 4 gatctcgtcatcatacgagaatcaacaggacattcaactcatgaggtttgctgattactt 63
||||||| ||| |||||||| || ||||| ||||| |||||| |||| || || |||||
Sbjct: 93 gatctcggaatcttacgagaaccagcaggatattcagctcatgcggttcgccgactactt 152
Query: 64 tggccgggcatttgtagctgtaagcgcatcccaatttgcatgggcaaagatgttcaagga 123
|||| || |||||| | || ||||| |||| || | ||||| ||||||||||||||
Sbjct: 153 tggcaggtcatttgcaagcgtgagcgccgcccagttcccctgggcgaagatgttcaagga 212
Query: 124 atcaacagtgtctaagatggttgacatcccactgtgccatattcctgaggctgtcatcaa 183
|||| |||||| ||||||||||| || || |||||||||||||||| | || |||
Sbjct: 213 atcactagtgtccaagatggttgatattcccttgtgccatattcctgaaccagttcgcaa 272
Query: 184 gactgcgagtgattggatcagtcaaagatcttctgatgccctgggagactttgttttgtg 243
|| |||||||| ||||||| ||| |||||| |||||||||||||||||||||| ||||
Sbjct: 273 cacagcgagtgactggatcaatcagagatctcctgatgccctgggagactttgtcatgtg 332
Query: 244 gtgtatagatagcatcatgtctgaattgtcaggtccatcagctggccctaagggttcaaa 303
||| ||||| ||||||||||||||| ||||||||| | ||| ||| |||||||||||||
Sbjct: 333 gtgcatagacagcatcatgtctgaactgtcaggtcaagcagtaggcgctaagggttcaaa 392
Query: 304 gaaggttgcacaacagtctccaagggcccaggttgcaatctttgttgttcttgccatgac 363
||||| ||||| || |||||||||||||||||||||| |||||||| |||||| ||||
Sbjct: 393 gaaggccgcacagcaaactccaagggcccaggttgcaatatttgttgtgcttgccttgac 452
Query: 364 tttaagaagaaagcctgatgtactggtaaatgttatgccaaagataatgggaaacaataa 423
| ||||||| || || || ||||| ||| || ||||||| |||||||||||||||||
Sbjct: 453 tgtaagaaggaaaccagaggtactaacaaacgtcctgccaaaaataatgggaaacaataa 512
Query: 424 atatctgggacaggaaaagcttcccatcattgtctgggttattgctcaggcctctcaagg 483
||||| || |||||||||||||| |||||||| ||||||||||||||||| ||||||||
Sbjct: 513 gtatcttgggcaggaaaagcttccaatcattgtttgggttattgctcaggcatctcaagg 572
Query: 484 tgacctagtgtctggcatgttttgctgggctcattctctatttcccacattatgtgcgaa 543
|||||||||| |||| |||||||| |||||||||| || ||||||||| | ||||| ||
Sbjct: 573 tgacctagtgactggaatgttttgttgggctcatttcctgtttcccacactgtgtgctaa 632
Query: 544 gtcaagtgggaatccccttgcaagagatttggttttgcagttgcttgaaagaattttgtc 603
| ||||||||||||||| | |||||||| ||| |||||||||| ||||||||||||||
Sbjct: 633 gccaagtgggaatccccagacgagagatttagttctgcagttgctcgaaagaattttgtc 692
Query: 604 tgtcaccaaagctcgttctatattattgaatggtgctgttagaaagggagaacgcttagt 663
|| | |||||||||| || ||| |||||||||||||||||||||| |||||| | |
Sbjct: 693 tgcccccaaagctcgaggcatcttactgaatggtgctgttagaaagggggaacgcctgat 752
Query: 664 tccccctgtttcatttgacttgttcatgagagccacatttcctgtttctaatgctcgagt 723
|||||||||| ||||||| ||||||||||||| ||||||||||||| | ||||| ||
Sbjct: 753 tccccctgttacatttgatctgttcatgagagctgcatttcctgtttccagcgctcgtgt 812
Query: 724 gaaggctacagaaaggtttgaagcagccta 753
||||||||||| |||||||||||||||||
Sbjct: 813 aaaggctacagagaggtttgaagcagccta 842
>gb|CB650242.1|CB650242 OSJNEb14J13.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb14J13 5', mRNA sequence
Length = 780
Score = 476 bits (240), Expect = e-131
Identities = 576/688 (83%)
Strand = Plus / Plus
Query: 4 gatctcgtcatcatacgagaatcaacaggacattcaactcatgaggtttgctgattactt 63
||||||| ||| |||||||| || ||||| ||||| |||||| |||| || || |||||
Sbjct: 93 gatctcggaatcttacgagaaccagcaggatattcagctcatgcggttcgccgactactt 152
Query: 64 tggccgggcatttgtagctgtaagcgcatcccaatttgcatgggcaaagatgttcaagga 123
|||| || |||||| | || ||||| |||| || | ||||| ||||||||||||||
Sbjct: 153 tggcaggtcatttgcaagcgtgagcgccgcccagttcccctgggcgaagatgttcaagga 212
Query: 124 atcaacagtgtctaagatggttgacatcccactgtgccatattcctgaggctgtcatcaa 183
|||| |||||| ||||||||||| || || |||||||||||||||| | || |||
Sbjct: 213 atcactagtgtccaagatggttgatattcccttgtgccatattcctgaaccagttcgcaa 272
Query: 184 gactgcgagtgattggatcagtcaaagatcttctgatgccctgggagactttgttttgtg 243
|| |||||||| ||||||| ||| |||||| |||||||||||||||||||||| ||||
Sbjct: 273 cacagcgagtgactggatcaatcagagatctcctgatgccctgggagactttgtcatgtg 332
Query: 244 gtgtatagatagcatcatgtctgaattgtcaggtccatcagctggccctaagggttcaaa 303
||| ||||| ||||||||||||||| ||||||||| | ||| ||| |||||||||||||
Sbjct: 333 gtgcatagacagcatcatgtctgaactgtcaggtcaagcagtaggcgctaagggttcaaa 392
Query: 304 gaaggttgcacaacagtctccaagggcccaggttgcaatctttgttgttcttgccatgac 363
||||| ||||| || |||||||||||||||||||||| |||||||| |||||| ||||
Sbjct: 393 gaaggccgcacagcaaactccaagggcccaggttgcaatatttgttgtgcttgccttgac 452
Query: 364 tttaagaagaaagcctgatgtactggtaaatgttatgccaaagataatgggaaacaataa 423
| ||||||| || || || ||||| ||| || ||||||| |||||||||||||||||
Sbjct: 453 tgtaagaaggaaaccagaggtactaacaaacgtcctgccaaaaataatgggaaacaataa 512
Query: 424 atatctgggacaggaaaagcttcccatcattgtctgggttattgctcaggcctctcaagg 483
||||| || |||||||||||||| |||||||| ||||||||||||||||| ||||||||
Sbjct: 513 gtatcttgggcaggaaaagcttccaatcattgtttgggttattgctcaggcatctcaagg 572
Query: 484 tgacctagtgtctggcatgttttgctgggctcattctctatttcccacattatgtgcgaa 543
|||||||||| |||| |||||||| |||||||||| || ||||||||| | ||||| ||
Sbjct: 573 tgacctagtgactggaatgttttgttgggctcatttcctgtttcccacactgtgtgctaa 632
Query: 544 gtcaagtgggaatccccttgcaagagatttggttttgcagttgcttgaaagaattttgtc 603
| ||||||||||||||| | |||||||| ||| |||||||||| ||||||||||||||
Sbjct: 633 gccaagtgggaatccccagacgagagatttagttctgcagttgctcgaaagaattttgtc 692
Query: 604 tgtcaccaaagctcgttctatattattgaatggtgctgttagaaagggagaacgcttagt 663
|| | |||||||||| || ||| |||||||||||||||||||||| |||||| | |
Sbjct: 693 tgcccccaaagctcgaggcatcttactgaatggtgctgttagaaagggggaacgcctgat 752
Query: 664 tccccctgtttcatttgacttgttcatg 691
|||||||||| ||||||| ||||||||
Sbjct: 753 tccccctgttacatttgatctgttcatg 780
>dbj|AK059332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-026-A08, full
insert sequence
Length = 1250
Score = 389 bits (196), Expect = e-105
Identities = 382/445 (85%)
Strand = Plus / Plus
Query: 524 tttcccacattatgtgcgaagtcaagtgggaatccccttgcaagagatttggttttgcag 583
||||||||| | ||||| ||| ||||||||||||||| | |||||||| ||| |||||
Sbjct: 5 tttcccacactgtgtgctaagccaagtgggaatccccagacgagagatttagttctgcag 64
Query: 584 ttgcttgaaagaattttgtctgtcaccaaagctcgttctatattattgaatggtgctgtt 643
||||| |||||||||||||||| | |||||||||| || ||| ||||||||||||||
Sbjct: 65 ttgctcgaaagaattttgtctgcccccaaagctcgaggcatcttactgaatggtgctgtt 124
Query: 644 agaaagggagaacgcttagttccccctgtttcatttgacttgttcatgagagccacattt 703
|||||||| |||||| | ||||||||||| ||||||| ||||||||||||| |||||
Sbjct: 125 agaaagggggaacgcctgattccccctgttacatttgatctgttcatgagagctgcattt 184
Query: 704 cctgtttctaatgctcgagtgaaggctacagaaaggtttgaagcagcctacccaatgatc 763
|||||||| | ||||| || ||||||||||| |||||||||||||||||||||| |||
Sbjct: 185 cctgtttccagcgctcgtgtaaaggctacagagaggtttgaagcagcctacccaacaatc 244
Query: 764 aaggagttggctcttgccggtcctcctggctcaaaaactgtgaaacaagcatcacaacag 823
||||||||||| ||||| |||||||||||||||||||| |||||||||||| |||| |||
Sbjct: 245 aaggagttggcccttgctggtcctcctggctcaaaaaccgtgaaacaagcagcacagcag 304
Query: 824 cttttacctttgtgtgcaaaagcaatgcaagaaaacaacgcagagctcaccagggaggct 883
||||| || ||||||| ||||||||||||||||| |||||||| |||||| ||||| ||
Sbjct: 305 cttttgccattgtgtgtgaaagcaatgcaagaaaataacgcagacctcaccggggagtct 364
Query: 884 gttgatgttttcatttggtgcttaactcaaaatgcagagtcgtacaagcannnggaaaga 943
| || ||| |||||||||||| | ||||||||||||||||| ||||||| |||||||
Sbjct: 365 gctggtgtattcatttggtgcctgactcaaaatgcagagtcctacaagctgtgggaaaga 424
Query: 944 atttatcttgaaaatattgaagcca 968
|| ||| ||||||| |||||||||
Sbjct: 425 cttcatcctgaaaatgttgaagcca 449
>gb|C26485.1|C26485 C26485 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C12421_2A, mRNA sequence
Length = 295
Score = 230 bits (116), Expect = 1e-057
Identities = 194/220 (88%)
Strand = Plus / Plus
Query: 399 tgccaaagataatgggaaacaataaatatctgggacaggaaaagcttcccatcattgtct 458
||||||| ||||||||||||||||| ||||| || |||||||||||||| |||||||| |
Sbjct: 31 tgccaaaaataatgggaaacaataagtatcttgggcaggaaaagcttccaatcattgttt 90
Query: 459 gggttattgctcaggcctctcaaggtgacctagtgtctggcatgttttgctgggctcatt 518
|||||||||||||||| |||||||||||||||||| |||| |||||||| ||||||||||
Sbjct: 91 gggttattgctcaggcatctcaaggtgacctagtgactggaatgttttgttgggctcatt 150
Query: 519 ctctatttcccacattatgtgcgaagtcaagtgggaatccccttgcaagagatttggttt 578
|| ||||||||| | ||||| ||| ||||||||||||||| | |||||||| |||
Sbjct: 151 tcctgtttcccacactgtgtgctaagccaagtgggaatccccagacgagagatttagttc 210
Query: 579 tgcagttgcttgaaagaattttgtctgtcaccaaagctcg 618
|||||||||| |||||||||||||||| | ||||||||||
Sbjct: 211 tgcagttgctcgaaagaattttgtctgcccccaaagctcg 250
>dbj|AP002538.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0408F06
Length = 137462
Score = 167 bits (84), Expect = 2e-038
Identities = 120/132 (90%)
Strand = Plus / Minus
Query: 726 aggctacagaaaggtttgaagcagcctacccaatgatcaaggagttggctcttgccggtc 785
|||||||||| |||||||||||||||||||||| |||||||||||||| ||||| ||||
Sbjct: 9281 aggctacagagaggtttgaagcagcctacccaacaatcaaggagttggcccttgctggtc 9222
Query: 786 ctcctggctcaaaaactgtgaaacaagcatcacaacagcttttacctttgtgtgcaaaag 845
|||||||||||||||| |||||||||||| |||| |||||||| || ||||||| ||||
Sbjct: 9221 ctcctggctcaaaaaccgtgaaacaagcagcacagcagcttttgccattgtgtgtgaaag 9162
Query: 846 caatgcaagaaa 857
||||||||||||
Sbjct: 9161 caatgcaagaaa 9150
Score = 145 bits (73), Expect = 6e-032
Identities = 130/149 (87%)
Strand = Plus / Minus
Query: 188 gcgagtgattggatcagtcaaagatcttctgatgccctgggagactttgttttgtggtgt 247
|||||||| ||||||| ||| |||||| |||||||||||||||||||||| |||||||
Sbjct: 10870 gcgagtgactggatcaatcagagatctcctgatgccctgggagactttgtcatgtggtgc 10811
Query: 248 atagatagcatcatgtctgaattgtcaggtccatcagctggccctaagggttcaaagaag 307
||||| ||||||||||||||| ||||||||| | ||| ||| |||||||||||||||||
Sbjct: 10810 atagacagcatcatgtctgaactgtcaggtcaagcagtaggcgctaagggttcaaagaag 10751
Query: 308 gttgcacaacagtctccaagggcccaggt 336
| ||||| || ||||||||||||||||
Sbjct: 10750 gccgcacagcaaactccaagggcccaggt 10722
Score = 123 bits (62), Expect = 2e-025
Identities = 122/142 (85%)
Strand = Plus / Minus
Query: 332 caggttgcaatctttgttgttcttgccatgactttaagaagaaagcctgatgtactggta 391
||||||||||| |||||||| |||||| ||||| ||||||| || || || ||||| |
Sbjct: 9983 caggttgcaatatttgttgtgcttgccttgactgtaagaaggaaaccagaggtactaaca 9924
Query: 392 aatgttatgccaaagataatgggaaacaataaatatctgggacaggaaaagcttcccatc 451
|| || ||||||| ||||||||||||||||| ||||| || |||||||||||||| |||
Sbjct: 9923 aacgtcctgccaaaaataatgggaaacaataagtatcttgggcaggaaaagcttccaatc 9864
Query: 452 attgtctgggttattgctcagg 473
||||| ||||||||||||||||
Sbjct: 9863 attgtttgggttattgctcagg 9842
Score = 103 bits (52), Expect = 2e-019
Identities = 106/124 (85%)
Strand = Plus / Minus
Query: 471 aggcctctcaaggtgacctagtgtctggcatgttttgctgggctcattctctatttccca 530
|||| |||||||||||||||||| |||| |||||||| |||||||||| || |||||||
Sbjct: 9730 aggcatctcaaggtgacctagtgactggaatgttttgttgggctcatttcctgtttccca 9671
Query: 531 cattatgtgcgaagtcaagtgggaatccccttgcaagagatttggttttgcagttgcttg 590
|| | ||||| ||| ||||||||||||||| | |||||||| ||| |||||||||| |
Sbjct: 9670 cactgtgtgctaagccaagtgggaatccccagacgagagatttagttctgcagttgctcg 9611
Query: 591 aaag 594
||||
Sbjct: 9610 aaag 9607
Score = 101 bits (51), Expect = 8e-019
Identities = 102/119 (85%)
Strand = Plus / Minus
Query: 593 agaattttgtctgtcaccaaagctcgttctatattattgaatggtgctgttagaaaggga 652
||||||||||||| | |||||||||| || ||| ||||||||||||||||||||||
Sbjct: 9501 agaattttgtctgcccccaaagctcgaggcatcttactgaatggtgctgttagaaagggg 9442
Query: 653 gaacgcttagttccccctgtttcatttgacttgttcatgagagccacatttcctgtttc 711
|||||| | ||||||||||| ||||||| ||||||||||||| |||||||||||||
Sbjct: 9441 gaacgcctgattccccctgttacatttgatctgttcatgagagctgcatttcctgtttc 9383
Score = 73.8 bits (37), Expect = 2e-010
Identities = 64/73 (87%)
Strand = Plus / Minus
Query: 860 aacgcagagctcaccagggaggctgttgatgttttcatttggtgcttaactcaaaatgca 919
|||||||| |||||| ||||| ||| || ||| |||||||||||| | ||||||||||||
Sbjct: 9045 aacgcagacctcaccggggagtctgctggtgtattcatttggtgcctgactcaaaatgca 8986
Query: 920 gagtcgtacaagc 932
||||| |||||||
Sbjct: 8985 gagtcctacaagc 8973
Score = 61.9 bits (31), Expect = 7e-007
Identities = 106/131 (80%)
Strand = Plus / Minus
Query: 17 tacgagaatcaacaggacattcaactcatgaggtttgctgattactttggccgggcattt 76
|||||||| || ||||| ||||| |||||| |||| || || ||||||||| || |||||
Sbjct: 11938 tacgagaaccagcaggatattcagctcatgcggttcgccgactactttggcaggtcattt 11879
Query: 77 gtagctgtaagcgcatcccaatttgcatgggcaaagatgttcaaggaatcaacagtgtct 136
| | || ||||| |||| || | ||||| |||||||||||||||||| ||||||
Sbjct: 11878 gcaagcgtgagcgccgcccagttcccctgggcgaagatgttcaaggaatcactagtgtcc 11819
Query: 137 aagatggttga 147
|||||||||||
Sbjct: 11818 aagatggttga 11808
>gb|AACV01000125.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg000125, whole
genome shotgun sequence
Length = 14801
Score = 167 bits (84), Expect = 2e-038
Identities = 120/132 (90%)
Strand = Plus / Minus
Query: 726 aggctacagaaaggtttgaagcagcctacccaatgatcaaggagttggctcttgccggtc 785
|||||||||| |||||||||||||||||||||| |||||||||||||| ||||| ||||
Sbjct: 5869 aggctacagagaggtttgaagcagcctacccaacaatcaaggagttggcccttgctggtc 5810
Query: 786 ctcctggctcaaaaactgtgaaacaagcatcacaacagcttttacctttgtgtgcaaaag 845
|||||||||||||||| |||||||||||| |||| |||||||| || ||||||| ||||
Sbjct: 5809 ctcctggctcaaaaaccgtgaaacaagcagcacagcagcttttgccattgtgtgtgaaag 5750
Query: 846 caatgcaagaaa 857
||||||||||||
Sbjct: 5749 caatgcaagaaa 5738
Score = 145 bits (73), Expect = 6e-032
Identities = 130/149 (87%)
Strand = Plus / Minus
Query: 188 gcgagtgattggatcagtcaaagatcttctgatgccctgggagactttgttttgtggtgt 247
|||||||| ||||||| ||| |||||| |||||||||||||||||||||| |||||||
Sbjct: 7459 gcgagtgactggatcaatcagagatctcctgatgccctgggagactttgtcatgtggtgc 7400
Query: 248 atagatagcatcatgtctgaattgtcaggtccatcagctggccctaagggttcaaagaag 307
||||| ||||||||||||||| ||||||||| | ||| ||| |||||||||||||||||
Sbjct: 7399 atagacagcatcatgtctgaactgtcaggtcaagcagtaggcgctaagggttcaaagaag 7340
Query: 308 gttgcacaacagtctccaagggcccaggt 336
| ||||| || ||||||||||||||||
Sbjct: 7339 gccgcacagcaaactccaagggcccaggt 7311
Score = 123 bits (62), Expect = 2e-025
Identities = 122/142 (85%)
Strand = Plus / Minus
Query: 332 caggttgcaatctttgttgttcttgccatgactttaagaagaaagcctgatgtactggta 391
||||||||||| |||||||| |||||| ||||| ||||||| || || || ||||| |
Sbjct: 6571 caggttgcaatatttgttgtgcttgccttgactgtaagaaggaaaccagaggtactaaca 6512
Query: 392 aatgttatgccaaagataatgggaaacaataaatatctgggacaggaaaagcttcccatc 451
|| || ||||||| ||||||||||||||||| ||||| || |||||||||||||| |||
Sbjct: 6511 aacgtcctgccaaaaataatgggaaacaataagtatcttgggcaggaaaagcttccaatc 6452
Query: 452 attgtctgggttattgctcagg 473
||||| ||||||||||||||||
Sbjct: 6451 attgtttgggttattgctcagg 6430
Score = 103 bits (52), Expect = 2e-019
Identities = 106/124 (85%)
Strand = Plus / Minus
Query: 471 aggcctctcaaggtgacctagtgtctggcatgttttgctgggctcattctctatttccca 530
|||| |||||||||||||||||| |||| |||||||| |||||||||| || |||||||
Sbjct: 6318 aggcatctcaaggtgacctagtgactggaatgttttgttgggctcatttcctgtttccca 6259
Query: 531 cattatgtgcgaagtcaagtgggaatccccttgcaagagatttggttttgcagttgcttg 590
|| | ||||| ||| ||||||||||||||| | |||||||| ||| |||||||||| |
Sbjct: 6258 cactgtgtgctaagccaagtgggaatccccagacgagagatttagttctgcagttgctcg 6199
Query: 591 aaag 594
||||
Sbjct: 6198 aaag 6195
Score = 101 bits (51), Expect = 8e-019
Identities = 102/119 (85%)
Strand = Plus / Minus
Query: 593 agaattttgtctgtcaccaaagctcgttctatattattgaatggtgctgttagaaaggga 652
||||||||||||| | |||||||||| || ||| ||||||||||||||||||||||
Sbjct: 6089 agaattttgtctgcccccaaagctcgaggcatcttactgaatggtgctgttagaaagggg 6030
Query: 653 gaacgcttagttccccctgtttcatttgacttgttcatgagagccacatttcctgtttc 711
|||||| | ||||||||||| ||||||| ||||||||||||| |||||||||||||
Sbjct: 6029 gaacgcctgattccccctgttacatttgatctgttcatgagagctgcatttcctgtttc 5971
Score = 73.8 bits (37), Expect = 2e-010
Identities = 64/73 (87%)
Strand = Plus / Minus
Query: 860 aacgcagagctcaccagggaggctgttgatgttttcatttggtgcttaactcaaaatgca 919
|||||||| |||||| ||||| ||| || ||| |||||||||||| | ||||||||||||
Sbjct: 5633 aacgcagacctcaccggggagtctgctggtgtattcatttggtgcctgactcaaaatgca 5574
Query: 920 gagtcgtacaagc 932
||||| |||||||
Sbjct: 5573 gagtcctacaagc 5561
Score = 61.9 bits (31), Expect = 7e-007
Identities = 106/131 (80%)
Strand = Plus / Minus
Query: 17 tacgagaatcaacaggacattcaactcatgaggtttgctgattactttggccgggcattt 76
|||||||| || ||||| ||||| |||||| |||| || || ||||||||| || |||||
Sbjct: 8527 tacgagaaccagcaggatattcagctcatgcggttcgccgactactttggcaggtcattt 8468
Query: 77 gtagctgtaagcgcatcccaatttgcatgggcaaagatgttcaaggaatcaacagtgtct 136
| | || ||||| |||| || | ||||| |||||||||||||||||| ||||||
Sbjct: 8467 gcaagcgtgagcgccgcccagttcccctgggcgaagatgttcaaggaatcactagtgtcc 8408
Query: 137 aagatggttga 147
|||||||||||
Sbjct: 8407 aagatggttga 8397
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 167 bits (84), Expect = 2e-038
Identities = 120/132 (90%)
Strand = Plus / Minus
Query: 726 aggctacagaaaggtttgaagcagcctacccaatgatcaaggagttggctcttgccggtc 785
|||||||||| |||||||||||||||||||||| |||||||||||||| ||||| ||||
Sbjct: 1569852 aggctacagagaggtttgaagcagcctacccaacaatcaaggagttggcccttgctggtc 1569793
Query: 786 ctcctggctcaaaaactgtgaaacaagcatcacaacagcttttacctttgtgtgcaaaag 845
|||||||||||||||| |||||||||||| |||| |||||||| || ||||||| ||||
Sbjct: 1569792 ctcctggctcaaaaaccgtgaaacaagcagcacagcagcttttgccattgtgtgtgaaag 1569733
Query: 846 caatgcaagaaa 857
||||||||||||
Sbjct: 1569732 caatgcaagaaa 1569721
Score = 145 bits (73), Expect = 6e-032
Identities = 130/149 (87%)
Strand = Plus / Minus
Query: 188 gcgagtgattggatcagtcaaagatcttctgatgccctgggagactttgttttgtggtgt 247
|||||||| ||||||| ||| |||||| |||||||||||||||||||||| |||||||
Sbjct: 1571441 gcgagtgactggatcaatcagagatctcctgatgccctgggagactttgtcatgtggtgc 1571382
Query: 248 atagatagcatcatgtctgaattgtcaggtccatcagctggccctaagggttcaaagaag 307
||||| ||||||||||||||| ||||||||| | ||| ||| |||||||||||||||||
Sbjct: 1571381 atagacagcatcatgtctgaactgtcaggtcaagcagtaggcgctaagggttcaaagaag 1571322
Query: 308 gttgcacaacagtctccaagggcccaggt 336
| ||||| || ||||||||||||||||
Sbjct: 1571321 gccgcacagcaaactccaagggcccaggt 1571293
Score = 123 bits (62), Expect = 2e-025
Identities = 122/142 (85%)
Strand = Plus / Minus
Query: 332 caggttgcaatctttgttgttcttgccatgactttaagaagaaagcctgatgtactggta 391
||||||||||| |||||||| |||||| ||||| ||||||| || || || ||||| |
Sbjct: 1570554 caggttgcaatatttgttgtgcttgccttgactgtaagaaggaaaccagaggtactaaca 1570495
Query: 392 aatgttatgccaaagataatgggaaacaataaatatctgggacaggaaaagcttcccatc 451
|| || ||||||| ||||||||||||||||| ||||| || |||||||||||||| |||
Sbjct: 1570494 aacgtcctgccaaaaataatgggaaacaataagtatcttgggcaggaaaagcttccaatc 1570435
Query: 452 attgtctgggttattgctcagg 473
||||| ||||||||||||||||
Sbjct: 1570434 attgtttgggttattgctcagg 1570413
Score = 103 bits (52), Expect = 2e-019
Identities = 106/124 (85%)
Strand = Plus / Minus
Query: 471 aggcctctcaaggtgacctagtgtctggcatgttttgctgggctcattctctatttccca 530
|||| |||||||||||||||||| |||| |||||||| |||||||||| || |||||||
Sbjct: 1570301 aggcatctcaaggtgacctagtgactggaatgttttgttgggctcatttcctgtttccca 1570242
Query: 531 cattatgtgcgaagtcaagtgggaatccccttgcaagagatttggttttgcagttgcttg 590
|| | ||||| ||| ||||||||||||||| | |||||||| ||| |||||||||| |
Sbjct: 1570241 cactgtgtgctaagccaagtgggaatccccagacgagagatttagttctgcagttgctcg 1570182
Query: 591 aaag 594
||||
Sbjct: 1570181 aaag 1570178
Score = 101 bits (51), Expect = 8e-019
Identities = 102/119 (85%)
Strand = Plus / Minus
Query: 593 agaattttgtctgtcaccaaagctcgttctatattattgaatggtgctgttagaaaggga 652
||||||||||||| | |||||||||| || ||| ||||||||||||||||||||||
Sbjct: 1570072 agaattttgtctgcccccaaagctcgaggcatcttactgaatggtgctgttagaaagggg 1570013
Query: 653 gaacgcttagttccccctgtttcatttgacttgttcatgagagccacatttcctgtttc 711
|||||| | ||||||||||| ||||||| ||||||||||||| |||||||||||||
Sbjct: 1570012 gaacgcctgattccccctgttacatttgatctgttcatgagagctgcatttcctgtttc 1569954
Score = 73.8 bits (37), Expect = 2e-010
Identities = 64/73 (87%)
Strand = Plus / Minus
Query: 860 aacgcagagctcaccagggaggctgttgatgttttcatttggtgcttaactcaaaatgca 919
|||||||| |||||| ||||| ||| || ||| |||||||||||| | ||||||||||||
Sbjct: 1569616 aacgcagacctcaccggggagtctgctggtgtattcatttggtgcctgactcaaaatgca 1569557
Query: 920 gagtcgtacaagc 932
||||| |||||||
Sbjct: 1569556 gagtcctacaagc 1569544
Score = 61.9 bits (31), Expect = 7e-007
Identities = 106/131 (80%)
Strand = Plus / Minus
Query: 17 tacgagaatcaacaggacattcaactcatgaggtttgctgattactttggccgggcattt 76
|||||||| || ||||| ||||| |||||| |||| || || ||||||||| || |||||
Sbjct: 1572509 tacgagaaccagcaggatattcagctcatgcggttcgccgactactttggcaggtcattt 1572450
Query: 77 gtagctgtaagcgcatcccaatttgcatgggcaaagatgttcaaggaatcaacagtgtct 136
| | || ||||| |||| || | ||||| |||||||||||||||||| ||||||
Sbjct: 1572449 gcaagcgtgagcgccgcccagttcccctgggcgaagatgttcaaggaatcactagtgtcc 1572390
Query: 137 aagatggttga 147
|||||||||||
Sbjct: 1572389 aagatggttga 1572379
>ref|NT_036312.3| Oryza sativa (japonica cultivar-group)
Length = 10050053
Score = 167 bits (84), Expect = 2e-038
Identities = 120/132 (90%)
Strand = Plus / Minus
Query: 726 aggctacagaaaggtttgaagcagcctacccaatgatcaaggagttggctcttgccggtc 785
|||||||||| |||||||||||||||||||||| |||||||||||||| ||||| ||||
Sbjct: 1569852 aggctacagagaggtttgaagcagcctacccaacaatcaaggagttggcccttgctggtc 1569793
Query: 786 ctcctggctcaaaaactgtgaaacaagcatcacaacagcttttacctttgtgtgcaaaag 845
|||||||||||||||| |||||||||||| |||| |||||||| || ||||||| ||||
Sbjct: 1569792 ctcctggctcaaaaaccgtgaaacaagcagcacagcagcttttgccattgtgtgtgaaag 1569733
Query: 846 caatgcaagaaa 857
||||||||||||
Sbjct: 1569732 caatgcaagaaa 1569721
Score = 145 bits (73), Expect = 6e-032
Identities = 130/149 (87%)
Strand = Plus / Minus
Query: 188 gcgagtgattggatcagtcaaagatcttctgatgccctgggagactttgttttgtggtgt 247
|||||||| ||||||| ||| |||||| |||||||||||||||||||||| |||||||
Sbjct: 1571441 gcgagtgactggatcaatcagagatctcctgatgccctgggagactttgtcatgtggtgc 1571382
Query: 248 atagatagcatcatgtctgaattgtcaggtccatcagctggccctaagggttcaaagaag 307
||||| ||||||||||||||| ||||||||| | ||| ||| |||||||||||||||||
Sbjct: 1571381 atagacagcatcatgtctgaactgtcaggtcaagcagtaggcgctaagggttcaaagaag 1571322
Query: 308 gttgcacaacagtctccaagggcccaggt 336
| ||||| || ||||||||||||||||
Sbjct: 1571321 gccgcacagcaaactccaagggcccaggt 1571293
Score = 123 bits (62), Expect = 2e-025
Identities = 122/142 (85%)
Strand = Plus / Minus
Query: 332 caggttgcaatctttgttgttcttgccatgactttaagaagaaagcctgatgtactggta 391
||||||||||| |||||||| |||||| ||||| ||||||| || || || ||||| |
Sbjct: 1570554 caggttgcaatatttgttgtgcttgccttgactgtaagaaggaaaccagaggtactaaca 1570495
Query: 392 aatgttatgccaaagataatgggaaacaataaatatctgggacaggaaaagcttcccatc 451
|| || ||||||| ||||||||||||||||| ||||| || |||||||||||||| |||
Sbjct: 1570494 aacgtcctgccaaaaataatgggaaacaataagtatcttgggcaggaaaagcttccaatc 1570435
Query: 452 attgtctgggttattgctcagg 473
||||| ||||||||||||||||
Sbjct: 1570434 attgtttgggttattgctcagg 1570413
Score = 103 bits (52), Expect = 2e-019
Identities = 106/124 (85%)
Strand = Plus / Minus
Query: 471 aggcctctcaaggtgacctagtgtctggcatgttttgctgggctcattctctatttccca 530
|||| |||||||||||||||||| |||| |||||||| |||||||||| || |||||||
Sbjct: 1570301 aggcatctcaaggtgacctagtgactggaatgttttgttgggctcatttcctgtttccca 1570242
Query: 531 cattatgtgcgaagtcaagtgggaatccccttgcaagagatttggttttgcagttgcttg 590
|| | ||||| ||| ||||||||||||||| | |||||||| ||| |||||||||| |
Sbjct: 1570241 cactgtgtgctaagccaagtgggaatccccagacgagagatttagttctgcagttgctcg 1570182
Query: 591 aaag 594
||||
Sbjct: 1570181 aaag 1570178
Score = 101 bits (51), Expect = 8e-019
Identities = 102/119 (85%)
Strand = Plus / Minus
Query: 593 agaattttgtctgtcaccaaagctcgttctatattattgaatggtgctgttagaaaggga 652
||||||||||||| | |||||||||| || ||| ||||||||||||||||||||||
Sbjct: 1570072 agaattttgtctgcccccaaagctcgaggcatcttactgaatggtgctgttagaaagggg 1570013
Query: 653 gaacgcttagttccccctgtttcatttgacttgttcatgagagccacatttcctgtttc 711
|||||| | ||||||||||| ||||||| ||||||||||||| |||||||||||||
Sbjct: 1570012 gaacgcctgattccccctgttacatttgatctgttcatgagagctgcatttcctgtttc 1569954
Score = 73.8 bits (37), Expect = 2e-010
Identities = 64/73 (87%)
Strand = Plus / Minus
Query: 860 aacgcagagctcaccagggaggctgttgatgttttcatttggtgcttaactcaaaatgca 919
|||||||| |||||| ||||| ||| || ||| |||||||||||| | ||||||||||||
Sbjct: 1569616 aacgcagacctcaccggggagtctgctggtgtattcatttggtgcctgactcaaaatgca 1569557
Query: 920 gagtcgtacaagc 932
||||| |||||||
Sbjct: 1569556 gagtcctacaagc 1569544
Score = 61.9 bits (31), Expect = 7e-007
Identities = 106/131 (80%)
Strand = Plus / Minus
Query: 17 tacgagaatcaacaggacattcaactcatgaggtttgctgattactttggccgggcattt 76
|||||||| || ||||| ||||| |||||| |||| || || ||||||||| || |||||
Sbjct: 1572509 tacgagaaccagcaggatattcagctcatgcggttcgccgactactttggcaggtcattt 1572450
Query: 77 gtagctgtaagcgcatcccaatttgcatgggcaaagatgttcaaggaatcaacagtgtct 136
| | || ||||| |||| || | ||||| |||||||||||||||||| ||||||
Sbjct: 1572449 gcaagcgtgagcgccgcccagttcccctgggcgaagatgttcaaggaatcactagtgtcc 1572390
Query: 137 aagatggttga 147
|||||||||||
Sbjct: 1572389 aagatggttga 1572379
>gb|CH401164.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000001 genomic
scaffold, whole genome shotgun sequence
Length = 11616395
Score = 167 bits (84), Expect = 2e-038
Identities = 120/132 (90%)
Strand = Plus / Minus
Query: 726 aggctacagaaaggtttgaagcagcctacccaatgatcaaggagttggctcttgccggtc 785
|||||||||| |||||||||||||||||||||| |||||||||||||| ||||| ||||
Sbjct: 1596244 aggctacagagaggtttgaagcagcctacccaacaatcaaggagttggcccttgctggtc 1596185
Query: 786 ctcctggctcaaaaactgtgaaacaagcatcacaacagcttttacctttgtgtgcaaaag 845
|||||||||||||||| |||||||||||| |||| |||||||| || ||||||| ||||
Sbjct: 1596184 ctcctggctcaaaaaccgtgaaacaagcagcacagcagcttttgccattgtgtgtgaaag 1596125
Query: 846 caatgcaagaaa 857
||||||||||||
Sbjct: 1596124 caatgcaagaaa 1596113
Score = 145 bits (73), Expect = 6e-032
Identities = 130/149 (87%)
Strand = Plus / Minus
Query: 188 gcgagtgattggatcagtcaaagatcttctgatgccctgggagactttgttttgtggtgt 247
|||||||| ||||||| ||| |||||| |||||||||||||||||||||| |||||||
Sbjct: 1597834 gcgagtgactggatcaatcagagatctcctgatgccctgggagactttgtcatgtggtgc 1597775
Query: 248 atagatagcatcatgtctgaattgtcaggtccatcagctggccctaagggttcaaagaag 307
||||| ||||||||||||||| ||||||||| | ||| ||| |||||||||||||||||
Sbjct: 1597774 atagacagcatcatgtctgaactgtcaggtcaagcagtaggcgctaagggttcaaagaag 1597715
Query: 308 gttgcacaacagtctccaagggcccaggt 336
| ||||| || ||||||||||||||||
Sbjct: 1597714 gccgcacagcaaactccaagggcccaggt 1597686
Score = 123 bits (62), Expect = 2e-025
Identities = 122/142 (85%)
Strand = Plus / Minus
Query: 332 caggttgcaatctttgttgttcttgccatgactttaagaagaaagcctgatgtactggta 391
||||||||||| |||||||| |||||| ||||| ||||||| || || || ||||| |
Sbjct: 1596946 caggttgcaatatttgttgtgcttgccttgactgtaagaaggaaaccagaggtactaaca 1596887
Query: 392 aatgttatgccaaagataatgggaaacaataaatatctgggacaggaaaagcttcccatc 451
|| || ||||||| ||||||||||||||||| ||||| || |||||||||||||| |||
Sbjct: 1596886 aacgtcctgccaaaaataatgggaaacaataagtatcttgggcaggaaaagcttccaatc 1596827
Query: 452 attgtctgggttattgctcagg 473
||||| ||||||||||||||||
Sbjct: 1596826 attgtttgggttattgctcagg 1596805
Score = 103 bits (52), Expect = 2e-019
Identities = 106/124 (85%)
Strand = Plus / Minus
Query: 471 aggcctctcaaggtgacctagtgtctggcatgttttgctgggctcattctctatttccca 530
|||| |||||||||||||||||| |||| |||||||| |||||||||| || |||||||
Sbjct: 1596693 aggcatctcaaggtgacctagtgactggaatgttttgttgggctcatttcctgtttccca 1596634
Query: 531 cattatgtgcgaagtcaagtgggaatccccttgcaagagatttggttttgcagttgcttg 590
|| | ||||| ||| ||||||||||||||| | |||||||| ||| |||||||||| |
Sbjct: 1596633 cactgtgtgctaagccaagtgggaatccccagacgagagatttagttctgcagttgctcg 1596574
Query: 591 aaag 594
||||
Sbjct: 1596573 aaag 1596570
Score = 101 bits (51), Expect = 8e-019
Identities = 102/119 (85%)
Strand = Plus / Minus
Query: 593 agaattttgtctgtcaccaaagctcgttctatattattgaatggtgctgttagaaaggga 652
||||||||||||| | |||||||||| || ||| ||||||||||||||||||||||
Sbjct: 1596464 agaattttgtctgcccccaaagctcgaggcatcttactgaatggtgctgttagaaagggg 1596405
Query: 653 gaacgcttagttccccctgtttcatttgacttgttcatgagagccacatttcctgtttc 711
|||||| | ||||||||||| ||||||| ||||||||||||| |||||||||||||
Sbjct: 1596404 gaacgcctgattccccctgttacatttgatctgttcatgagagctgcatttcctgtttc 1596346
Score = 73.8 bits (37), Expect = 2e-010
Identities = 64/73 (87%)
Strand = Plus / Minus
Query: 860 aacgcagagctcaccagggaggctgttgatgttttcatttggtgcttaactcaaaatgca 919
|||||||| |||||| ||||| ||| || ||| |||||||||||| | ||||||||||||
Sbjct: 1596008 aacgcagacctcaccggggagtctgctggtgtattcatttggtgcctgactcaaaatgca 1595949
Query: 920 gagtcgtacaagc 932
||||| |||||||
Sbjct: 1595948 gagtcctacaagc 1595936
Score = 61.9 bits (31), Expect = 7e-007
Identities = 106/131 (80%)
Strand = Plus / Minus
Query: 17 tacgagaatcaacaggacattcaactcatgaggtttgctgattactttggccgggcattt 76
|||||||| || ||||| ||||| |||||| |||| || || ||||||||| || |||||
Sbjct: 1598902 tacgagaaccagcaggatattcagctcatgcggttcgccgactactttggcaggtcattt 1598843
Query: 77 gtagctgtaagcgcatcccaatttgcatgggcaaagatgttcaaggaatcaacagtgtct 136
| | || ||||| |||| || | ||||| |||||||||||||||||| ||||||
Sbjct: 1598842 gcaagcgtgagcgccgcccagttcccctgggcgaagatgttcaaggaatcactagtgtcc 1598783
Query: 137 aagatggttga 147
|||||||||||
Sbjct: 1598782 aagatggttga 1598772
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 167 bits (84), Expect = 2e-038
Identities = 120/132 (90%)
Strand = Plus / Minus
Query: 726 aggctacagaaaggtttgaagcagcctacccaatgatcaaggagttggctcttgccggtc 785
|||||||||| |||||||||||||||||||||| |||||||||||||| ||||| ||||
Sbjct: 1596244 aggctacagagaggtttgaagcagcctacccaacaatcaaggagttggcccttgctggtc 1596185
Query: 786 ctcctggctcaaaaactgtgaaacaagcatcacaacagcttttacctttgtgtgcaaaag 845
|||||||||||||||| |||||||||||| |||| |||||||| || ||||||| ||||
Sbjct: 1596184 ctcctggctcaaaaaccgtgaaacaagcagcacagcagcttttgccattgtgtgtgaaag 1596125
Query: 846 caatgcaagaaa 857
||||||||||||
Sbjct: 1596124 caatgcaagaaa 1596113
Score = 145 bits (73), Expect = 6e-032
Identities = 130/149 (87%)
Strand = Plus / Minus
Query: 188 gcgagtgattggatcagtcaaagatcttctgatgccctgggagactttgttttgtggtgt 247
|||||||| ||||||| ||| |||||| |||||||||||||||||||||| |||||||
Sbjct: 1597834 gcgagtgactggatcaatcagagatctcctgatgccctgggagactttgtcatgtggtgc 1597775
Query: 248 atagatagcatcatgtctgaattgtcaggtccatcagctggccctaagggttcaaagaag 307
||||| ||||||||||||||| ||||||||| | ||| ||| |||||||||||||||||
Sbjct: 1597774 atagacagcatcatgtctgaactgtcaggtcaagcagtaggcgctaagggttcaaagaag 1597715
Query: 308 gttgcacaacagtctccaagggcccaggt 336
| ||||| || ||||||||||||||||
Sbjct: 1597714 gccgcacagcaaactccaagggcccaggt 1597686
Score = 123 bits (62), Expect = 2e-025
Identities = 122/142 (85%)
Strand = Plus / Minus
Query: 332 caggttgcaatctttgttgttcttgccatgactttaagaagaaagcctgatgtactggta 391
||||||||||| |||||||| |||||| ||||| ||||||| || || || ||||| |
Sbjct: 1596946 caggttgcaatatttgttgtgcttgccttgactgtaagaaggaaaccagaggtactaaca 1596887
Query: 392 aatgttatgccaaagataatgggaaacaataaatatctgggacaggaaaagcttcccatc 451
|| || ||||||| ||||||||||||||||| ||||| || |||||||||||||| |||
Sbjct: 1596886 aacgtcctgccaaaaataatgggaaacaataagtatcttgggcaggaaaagcttccaatc 1596827
Query: 452 attgtctgggttattgctcagg 473
||||| ||||||||||||||||
Sbjct: 1596826 attgtttgggttattgctcagg 1596805
Score = 103 bits (52), Expect = 2e-019
Identities = 106/124 (85%)
Strand = Plus / Minus
Query: 471 aggcctctcaaggtgacctagtgtctggcatgttttgctgggctcattctctatttccca 530
|||| |||||||||||||||||| |||| |||||||| |||||||||| || |||||||
Sbjct: 1596693 aggcatctcaaggtgacctagtgactggaatgttttgttgggctcatttcctgtttccca 1596634
Query: 531 cattatgtgcgaagtcaagtgggaatccccttgcaagagatttggttttgcagttgcttg 590
|| | ||||| ||| ||||||||||||||| | |||||||| ||| |||||||||| |
Sbjct: 1596633 cactgtgtgctaagccaagtgggaatccccagacgagagatttagttctgcagttgctcg 1596574
Query: 591 aaag 594
||||
Sbjct: 1596573 aaag 1596570
Score = 101 bits (51), Expect = 8e-019
Identities = 102/119 (85%)
Strand = Plus / Minus
Query: 593 agaattttgtctgtcaccaaagctcgttctatattattgaatggtgctgttagaaaggga 652
||||||||||||| | |||||||||| || ||| ||||||||||||||||||||||
Sbjct: 1596464 agaattttgtctgcccccaaagctcgaggcatcttactgaatggtgctgttagaaagggg 1596405
Query: 653 gaacgcttagttccccctgtttcatttgacttgttcatgagagccacatttcctgtttc 711
|||||| | ||||||||||| ||||||| ||||||||||||| |||||||||||||
Sbjct: 1596404 gaacgcctgattccccctgttacatttgatctgttcatgagagctgcatttcctgtttc 1596346
Score = 73.8 bits (37), Expect = 2e-010
Identities = 64/73 (87%)
Strand = Plus / Minus
Query: 860 aacgcagagctcaccagggaggctgttgatgttttcatttggtgcttaactcaaaatgca 919
|||||||| |||||| ||||| ||| || ||| |||||||||||| | ||||||||||||
Sbjct: 1596008 aacgcagacctcaccggggagtctgctggtgtattcatttggtgcctgactcaaaatgca 1595949
Query: 920 gagtcgtacaagc 932
||||| |||||||
Sbjct: 1595948 gagtcctacaagc 1595936
Score = 61.9 bits (31), Expect = 7e-007
Identities = 106/131 (80%)
Strand = Plus / Minus
Query: 17 tacgagaatcaacaggacattcaactcatgaggtttgctgattactttggccgggcattt 76
|||||||| || ||||| ||||| |||||| |||| || || ||||||||| || |||||
Sbjct: 1598902 tacgagaaccagcaggatattcagctcatgcggttcgccgactactttggcaggtcattt 1598843
Query: 77 gtagctgtaagcgcatcccaatttgcatgggcaaagatgttcaaggaatcaacagtgtct 136
| | || ||||| |||| || | ||||| |||||||||||||||||| ||||||
Sbjct: 1598842 gcaagcgtgagcgccgcccagttcccctgggcgaagatgttcaaggaatcactagtgtcc 1598783
Query: 137 aagatggttga 147
|||||||||||
Sbjct: 1598782 aagatggttga 1598772
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 167 bits (84), Expect = 2e-038
Identities = 120/132 (90%)
Strand = Plus / Minus
Query: 726 aggctacagaaaggtttgaagcagcctacccaatgatcaaggagttggctcttgccggtc 785
|||||||||| |||||||||||||||||||||| |||||||||||||| ||||| ||||
Sbjct: 1572050 aggctacagagaggtttgaagcagcctacccaacaatcaaggagttggcccttgctggtc 1571991
Query: 786 ctcctggctcaaaaactgtgaaacaagcatcacaacagcttttacctttgtgtgcaaaag 845
|||||||||||||||| |||||||||||| |||| |||||||| || ||||||| ||||
Sbjct: 1571990 ctcctggctcaaaaaccgtgaaacaagcagcacagcagcttttgccattgtgtgtgaaag 1571931
Query: 846 caatgcaagaaa 857
||||||||||||
Sbjct: 1571930 caatgcaagaaa 1571919
Score = 145 bits (73), Expect = 6e-032
Identities = 130/149 (87%)
Strand = Plus / Minus
Query: 188 gcgagtgattggatcagtcaaagatcttctgatgccctgggagactttgttttgtggtgt 247
|||||||| ||||||| ||| |||||| |||||||||||||||||||||| |||||||
Sbjct: 1573639 gcgagtgactggatcaatcagagatctcctgatgccctgggagactttgtcatgtggtgc 1573580
Query: 248 atagatagcatcatgtctgaattgtcaggtccatcagctggccctaagggttcaaagaag 307
||||| ||||||||||||||| ||||||||| | ||| ||| |||||||||||||||||
Sbjct: 1573579 atagacagcatcatgtctgaactgtcaggtcaagcagtaggcgctaagggttcaaagaag 1573520
Query: 308 gttgcacaacagtctccaagggcccaggt 336
| ||||| || ||||||||||||||||
Sbjct: 1573519 gccgcacagcaaactccaagggcccaggt 1573491
Score = 123 bits (62), Expect = 2e-025
Identities = 122/142 (85%)
Strand = Plus / Minus
Query: 332 caggttgcaatctttgttgttcttgccatgactttaagaagaaagcctgatgtactggta 391
||||||||||| |||||||| |||||| ||||| ||||||| || || || ||||| |
Sbjct: 1572752 caggttgcaatatttgttgtgcttgccttgactgtaagaaggaaaccagaggtactaaca 1572693
Query: 392 aatgttatgccaaagataatgggaaacaataaatatctgggacaggaaaagcttcccatc 451
|| || ||||||| ||||||||||||||||| ||||| || |||||||||||||| |||
Sbjct: 1572692 aacgtcctgccaaaaataatgggaaacaataagtatcttgggcaggaaaagcttccaatc 1572633
Query: 452 attgtctgggttattgctcagg 473
||||| ||||||||||||||||
Sbjct: 1572632 attgtttgggttattgctcagg 1572611
Score = 103 bits (52), Expect = 2e-019
Identities = 106/124 (85%)
Strand = Plus / Minus
Query: 471 aggcctctcaaggtgacctagtgtctggcatgttttgctgggctcattctctatttccca 530
|||| |||||||||||||||||| |||| |||||||| |||||||||| || |||||||
Sbjct: 1572499 aggcatctcaaggtgacctagtgactggaatgttttgttgggctcatttcctgtttccca 1572440
Query: 531 cattatgtgcgaagtcaagtgggaatccccttgcaagagatttggttttgcagttgcttg 590
|| | ||||| ||| ||||||||||||||| | |||||||| ||| |||||||||| |
Sbjct: 1572439 cactgtgtgctaagccaagtgggaatccccagacgagagatttagttctgcagttgctcg 1572380
Query: 591 aaag 594
||||
Sbjct: 1572379 aaag 1572376
Score = 101 bits (51), Expect = 8e-019
Identities = 102/119 (85%)
Strand = Plus / Minus
Query: 593 agaattttgtctgtcaccaaagctcgttctatattattgaatggtgctgttagaaaggga 652
||||||||||||| | |||||||||| || ||| ||||||||||||||||||||||
Sbjct: 1572270 agaattttgtctgcccccaaagctcgaggcatcttactgaatggtgctgttagaaagggg 1572211
Query: 653 gaacgcttagttccccctgtttcatttgacttgttcatgagagccacatttcctgtttc 711
|||||| | ||||||||||| ||||||| ||||||||||||| |||||||||||||
Sbjct: 1572210 gaacgcctgattccccctgttacatttgatctgttcatgagagctgcatttcctgtttc 1572152
Score = 73.8 bits (37), Expect = 2e-010
Identities = 64/73 (87%)
Strand = Plus / Minus
Query: 860 aacgcagagctcaccagggaggctgttgatgttttcatttggtgcttaactcaaaatgca 919
|||||||| |||||| ||||| ||| || ||| |||||||||||| | ||||||||||||
Sbjct: 1571814 aacgcagacctcaccggggagtctgctggtgtattcatttggtgcctgactcaaaatgca 1571755
Query: 920 gagtcgtacaagc 932
||||| |||||||
Sbjct: 1571754 gagtcctacaagc 1571742
Score = 61.9 bits (31), Expect = 7e-007
Identities = 106/131 (80%)
Strand = Plus / Minus
Query: 17 tacgagaatcaacaggacattcaactcatgaggtttgctgattactttggccgggcattt 76
|||||||| || ||||| ||||| |||||| |||| || || ||||||||| || |||||
Sbjct: 1574707 tacgagaaccagcaggatattcagctcatgcggttcgccgactactttggcaggtcattt 1574648
Query: 77 gtagctgtaagcgcatcccaatttgcatgggcaaagatgttcaaggaatcaacagtgtct 136
| | || ||||| |||| || | ||||| |||||||||||||||||| ||||||
Sbjct: 1574647 gcaagcgtgagcgccgcccagttcccctgggcgaagatgttcaaggaatcactagtgtcc 1574588
Query: 137 aagatggttga 147
|||||||||||
Sbjct: 1574587 aagatggttga 1574577
>gb|AU097610.1|AU097610 AU097610 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C0749, mRNA sequence
Length = 342
Score = 145 bits (73), Expect = 6e-032
Identities = 168/200 (84%)
Strand = Plus / Plus
Query: 104 tgggcaaagatgttcaaggaatcaacagtgtctaagatggttgacatcccactgtgccat 163
||||| |||||||||||||||||| |||||| ||||||||||| || || ||||||||
Sbjct: 143 tgggcgaagatgttcaaggaatcactagtgtccaagatggttgatattcccttgtgccat 202
Query: 164 attcctgaggctgtcatcaagactgcgagtgattggatcagtcaaagatcttctgatgcc 223
|||||||| | || || || |||||||| ||||||| ||| |||||| ||||||||
Sbjct: 203 attcctgaaccagttcgnaacacagcgagtgactggatcaatcagagatctcctgatgcc 262
Query: 224 ctgggagactttgttttgtggtgtatagatagcatcatgtctgaattgtcaggtccatca 283
|||||| ||||||| ||||||| ||||| ||||||||||||||| ||||||||| | ||
Sbjct: 263 ctgggatactttgtcatgtggtgcatagacagcatcatgtctgaactgtcaggtcaagca 322
Query: 284 gctggccctaagggttcaaa 303
| ||| |||||||||||||
Sbjct: 323 gtaggcgctaagggttcaaa 342
>gb|CB653647.1|CB653647 OSJNEc04O03.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc04O03 5', mRNA sequence
Length = 709
Score = 79.8 bits (40), Expect = 3e-012
Identities = 136/168 (80%)
Strand = Plus / Plus
Query: 4 gatctcgtcatcatacgagaatcaacaggacattcaactcatgaggtttgctgattactt 63
||||||| ||| |||||||| || ||||| ||||| |||||| |||| || || |||||
Sbjct: 507 gatctcggaatcttacgagaaccagcaggatattcagctcatgcggttcgccgactactt 566
Query: 64 tggccgggcatttgtagctgtaagcgcatcccaatttgcatgggcaaagatgttcaagga 123
|||| || |||||| | || ||||| |||| || | ||||| ||||||||||||||
Sbjct: 567 tggcaggtcatttgcaagcgtgagcgccgcccagttcccctgggcgaagatgttcaagga 626
Query: 124 atcaacagtgtctaagatggttgacatcccactgtgccatattcctga 171
|||| |||||| ||||||||||| || || ||||||||||||||||
Sbjct: 627 atcactagtgtccaagatggttgatattcccttgtgccatattcctga 674
>gb|CB676071.1|CB676071 OSJNEe12C01.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe12C01 5', mRNA sequence
Length = 796
Score = 79.8 bits (40), Expect = 3e-012
Identities = 136/168 (80%)
Strand = Plus / Plus
Query: 4 gatctcgtcatcatacgagaatcaacaggacattcaactcatgaggtttgctgattactt 63
||||||| ||| |||||||| || ||||| ||||| |||||| |||| || || |||||
Sbjct: 594 gatctcggaatcttacgagaaccagcaggatattcagctcatgcggttcgccgactactt 653
Query: 64 tggccgggcatttgtagctgtaagcgcatcccaatttgcatgggcaaagatgttcaagga 123
|||| || |||||| | || ||||| |||| || | ||||| ||||||||||||||
Sbjct: 654 tggcaggtcatttgcaagcgtgagcgccgcccagttcccctgggcgaagatgttcaagga 713
Query: 124 atcaacagtgtctaagatggttgacatcccactgtgccatattcctga 171
|||| |||||| ||||||||||| || || ||||||||||||||||
Sbjct: 714 atcactagtgtccaagatggttgatattcccttgtgccatattcctga 761
>gb|AQ158649.1|AQ158649 nbxb0011L22r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0011L22r, DNA sequence
Length = 628
Score = 67.9 bits (34), Expect = 1e-008
Identities = 115/142 (80%)
Strand = Plus / Plus
Query: 332 caggttgcaatctttgttgttcttgccatgactttaagaagaaagcctgatgtactggta 391
||||||||||| |||||||| |||||| ||||| | ||||| || || || ||||| |
Sbjct: 459 caggttgcaatatttgttgtgcttgccttgactgttagaaggaaaccagaggtactaaca 518
Query: 392 aatgttatgccaaagataatgggaaacaataaatatctgggacaggaaaagcttcccatc 451
| || ||||||| ||||||||||||||||| | ||| || ||||||||| | | |||
Sbjct: 519 tacgtcctgccaaaaataatgggaaacaataagtttcttgggcaggaaaaggcttcaatc 578
Query: 452 attgtctgggttattgctcagg 473
|||| ||||||||||||||||
Sbjct: 579 attggttgggttattgctcagg 600
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,461,389
Number of Sequences: 438736
Number of extensions: 1461389
Number of successful extensions: 8046
Number of sequences better than 0.5: 17
Number of HSP's better than 0.5 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7892
Number of HSP's gapped (non-prelim): 131
length of query: 1118
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1097
effective length of database: 2,791,206,460
effective search space: 3061953486620
effective search space used: 3061953486620
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)