BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3802297.2.1
(606 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK070513.1| Oryza sativa (japonica cultivar-group) cDNA... 319 1e-084
gb|AC118668.2| Genomic sequence for Oryza sativa, Nipponbar... 319 1e-084
gb|AACV01006428.1| Oryza sativa (japonica cultivar-group) c... 319 1e-084
ref|NT_107192.1| Oryza sativa (japonica cultivar-group) 319 1e-084
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 319 1e-084
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 319 1e-084
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 319 1e-084
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 319 1e-084
gb|CB651164.1|CB651164 OSJNEb16A10.r OSJNEb Oryza sativa (j... 48 0.006
gb|CB675160.1|CB675160 OSJNEe10L01.r OSJNEe Oryza sativa (j... 48 0.006
dbj|AK071728.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.006
dbj|AK109763.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.006
dbj|AK120977.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.006
dbj|AP003345.3| Oryza sativa (japonica cultivar-group) geno... 48 0.006
gb|AACV01002476.1| Oryza sativa (japonica cultivar-group) c... 48 0.006
gb|AACV01017055.1| Oryza sativa (japonica cultivar-group) c... 48 0.006
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 48 0.006
ref|NM_190847.1| Oryza sativa (japonica cultivar-group), p... 48 0.006
ref|XM_479611.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.006
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 48 0.006
dbj|AP004316.4| Oryza sativa (japonica cultivar-group) geno... 48 0.006
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 48 0.006
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.006
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.006
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.006
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.006
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 48 0.006
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 48 0.006
dbj|AP003405.1| Oryza sativa (japonica cultivar-group) chro... 44 0.086
dbj|AK101962.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.086
dbj|AK105682.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.086
gb|AACV01002791.1| Oryza sativa (japonica cultivar-group) c... 44 0.086
gb|AACV01002792.1| Oryza sativa (japonica cultivar-group) c... 44 0.086
ref|NM_190160.1| Oryza sativa (japonica cultivar-group), p... 44 0.086
dbj|AP003227.3| Oryza sativa (japonica cultivar-group) geno... 44 0.086
gb|AQ912682.1|AQ912682 nbeb0038G01f CUGI Rice BAC Library (... 42 0.34
gb|AZ128655.1|AZ128655 OSJNBb0099F23r CUGI Rice BAC Library... 42 0.34
gb|AACV01016171.1| Oryza sativa (japonica cultivar-group) c... 42 0.34
dbj|AP005261.4| Oryza sativa (japonica cultivar-group) geno... 42 0.34
>dbj|AK070513.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023057H15, full
insert sequence
Length = 2099
Score = 319 bits (161), Expect = 1e-084
Identities = 293/337 (86%)
Strand = Plus / Plus
Query: 97 gttcaggaccttcctgggccgcccgtggaaggagcactcgcgcacgctctacatccagtc 156
||||| ||| ||||| |||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 1477 gttcaagacgttcctcggccgcccgtggaaggagtactcgcggacgctctacatccagtc 1536
Query: 157 ggagatcggcgggttcatcgacccgcagggctggctgccgtggctcggcgacttcggcct 216
|| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1537 cgacatcggcgggttcatcgacccgcaggggtggctgccgtggctcggcgacttcggcct 1596
Query: 217 cagcacctgctactacgccaaggtggagaaccacgggcccggcgccaacatgagcgaacg 276
|| |||||||||||||||| |||||||||||| ||| ||||||| |||||||| | ||
Sbjct: 1597 caacacctgctactacgccgaggtggagaaccgcggcgacggcgccgacatgagcaagcg 1656
Query: 277 cgtaaagtggaggggtatcaagaacatcacctaccagcacgcgatgcagaagtacaccgt 336
|| |||||||| || |||||| |||| |||||||| ||| |||||||||||||||
Sbjct: 1657 cgccaagtggagaggggtcaagacggtcacgtaccagcaggcgcagcagaagtacaccgt 1716
Query: 337 cgagagcttcatccagggccagcactggctcccacagctcggcgtgccattcatcccggg 396
|||||| ||||||||||| ||| ||||||||| || |||||||||| |||||||| ||
Sbjct: 1717 cgagaggttcatccagggacagacgtggctcccaaagttcggcgtgccgttcatccccgg 1776
Query: 397 gctgctgccgcagcagcaatcgggcaggatacactga 433
||| |||||||| |||| || || ||||||||||||
Sbjct: 1777 cctgttgccgcaggagcagtcagggaggatacactga 1813
Score = 60.0 bits (30), Expect = 1e-006
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 1 ggcgcagggccgcaaggagaggcggtcggtgggcggcaccgtcatccacaactgcaccgt 60
||||||||| |||||||||| || || | ||||||||| || ||||||||||||||| |
Sbjct: 1381 ggcgcaggggcgcaaggagaagcactccgcgggcggcacggtgatccacaactgcaccat 1440
Query: 61 cgcgccgcac 70
|| |||||||
Sbjct: 1441 cgagccgcac 1450
>gb|AC118668.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
OSJNBa0036G02, from chromosome 3, complete sequence
Length = 153308
Score = 319 bits (161), Expect = 1e-084
Identities = 293/337 (86%)
Strand = Plus / Minus
Query: 97 gttcaggaccttcctgggccgcccgtggaaggagcactcgcgcacgctctacatccagtc 156
||||| ||| ||||| |||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 93130 gttcaagacgttcctcggccgcccgtggaaggagtactcgcggacgctctacatccagtc 93071
Query: 157 ggagatcggcgggttcatcgacccgcagggctggctgccgtggctcggcgacttcggcct 216
|| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 93070 cgacatcggcgggttcatcgacccgcaggggtggctgccgtggctcggcgacttcggcct 93011
Query: 217 cagcacctgctactacgccaaggtggagaaccacgggcccggcgccaacatgagcgaacg 276
|| |||||||||||||||| |||||||||||| ||| ||||||| |||||||| | ||
Sbjct: 93010 caacacctgctactacgccgaggtggagaaccgcggcgacggcgccgacatgagcaagcg 92951
Query: 277 cgtaaagtggaggggtatcaagaacatcacctaccagcacgcgatgcagaagtacaccgt 336
|| |||||||| || |||||| |||| |||||||| ||| |||||||||||||||
Sbjct: 92950 cgccaagtggagaggggtcaagacggtcacgtaccagcaggcgcagcagaagtacaccgt 92891
Query: 337 cgagagcttcatccagggccagcactggctcccacagctcggcgtgccattcatcccggg 396
|||||| ||||||||||| ||| ||||||||| || |||||||||| |||||||| ||
Sbjct: 92890 cgagaggttcatccagggacagacgtggctcccaaagttcggcgtgccgttcatccccgg 92831
Query: 397 gctgctgccgcagcagcaatcgggcaggatacactga 433
||| |||||||| |||| || || ||||||||||||
Sbjct: 92830 cctgttgccgcaggagcagtcagggaggatacactga 92794
Score = 60.0 bits (30), Expect = 1e-006
Identities = 60/70 (85%)
Strand = Plus / Minus
Query: 1 ggcgcagggccgcaaggagaggcggtcggtgggcggcaccgtcatccacaactgcaccgt 60
||||||||| |||||||||| || || | ||||||||| || ||||||||||||||| |
Sbjct: 93226 ggcgcaggggcgcaaggagaagcactccgcgggcggcacggtgatccacaactgcaccat 93167
Query: 61 cgcgccgcac 70
|| |||||||
Sbjct: 93166 cgagccgcac 93157
>gb|AACV01006428.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006428, whole
genome shotgun sequence
Length = 19243
Score = 319 bits (161), Expect = 1e-084
Identities = 293/337 (86%)
Strand = Plus / Plus
Query: 97 gttcaggaccttcctgggccgcccgtggaaggagcactcgcgcacgctctacatccagtc 156
||||| ||| ||||| |||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 3937 gttcaagacgttcctcggccgcccgtggaaggagtactcgcggacgctctacatccagtc 3996
Query: 157 ggagatcggcgggttcatcgacccgcagggctggctgccgtggctcggcgacttcggcct 216
|| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 3997 cgacatcggcgggttcatcgacccgcaggggtggctgccgtggctcggcgacttcggcct 4056
Query: 217 cagcacctgctactacgccaaggtggagaaccacgggcccggcgccaacatgagcgaacg 276
|| |||||||||||||||| |||||||||||| ||| ||||||| |||||||| | ||
Sbjct: 4057 caacacctgctactacgccgaggtggagaaccgcggcgacggcgccgacatgagcaagcg 4116
Query: 277 cgtaaagtggaggggtatcaagaacatcacctaccagcacgcgatgcagaagtacaccgt 336
|| |||||||| || |||||| |||| |||||||| ||| |||||||||||||||
Sbjct: 4117 cgccaagtggagaggggtcaagacggtcacgtaccagcaggcgcagcagaagtacaccgt 4176
Query: 337 cgagagcttcatccagggccagcactggctcccacagctcggcgtgccattcatcccggg 396
|||||| ||||||||||| ||| ||||||||| || |||||||||| |||||||| ||
Sbjct: 4177 cgagaggttcatccagggacagacgtggctcccaaagttcggcgtgccgttcatccccgg 4236
Query: 397 gctgctgccgcagcagcaatcgggcaggatacactga 433
||| |||||||| |||| || || ||||||||||||
Sbjct: 4237 cctgttgccgcaggagcagtcagggaggatacactga 4273
Score = 60.0 bits (30), Expect = 1e-006
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 1 ggcgcagggccgcaaggagaggcggtcggtgggcggcaccgtcatccacaactgcaccgt 60
||||||||| |||||||||| || || | ||||||||| || ||||||||||||||| |
Sbjct: 3841 ggcgcaggggcgcaaggagaagcactccgcgggcggcacggtgatccacaactgcaccat 3900
Query: 61 cgcgccgcac 70
|| |||||||
Sbjct: 3901 cgagccgcac 3910
>ref|NT_107192.1| Oryza sativa (japonica cultivar-group)
Length = 4781381
Score = 319 bits (161), Expect = 1e-084
Identities = 293/337 (86%)
Strand = Plus / Minus
Query: 97 gttcaggaccttcctgggccgcccgtggaaggagcactcgcgcacgctctacatccagtc 156
||||| ||| ||||| |||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 1881234 gttcaagacgttcctcggccgcccgtggaaggagtactcgcggacgctctacatccagtc 1881175
Query: 157 ggagatcggcgggttcatcgacccgcagggctggctgccgtggctcggcgacttcggcct 216
|| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1881174 cgacatcggcgggttcatcgacccgcaggggtggctgccgtggctcggcgacttcggcct 1881115
Query: 217 cagcacctgctactacgccaaggtggagaaccacgggcccggcgccaacatgagcgaacg 276
|| |||||||||||||||| |||||||||||| ||| ||||||| |||||||| | ||
Sbjct: 1881114 caacacctgctactacgccgaggtggagaaccgcggcgacggcgccgacatgagcaagcg 1881055
Query: 277 cgtaaagtggaggggtatcaagaacatcacctaccagcacgcgatgcagaagtacaccgt 336
|| |||||||| || |||||| |||| |||||||| ||| |||||||||||||||
Sbjct: 1881054 cgccaagtggagaggggtcaagacggtcacgtaccagcaggcgcagcagaagtacaccgt 1880995
Query: 337 cgagagcttcatccagggccagcactggctcccacagctcggcgtgccattcatcccggg 396
|||||| ||||||||||| ||| ||||||||| || |||||||||| |||||||| ||
Sbjct: 1880994 cgagaggttcatccagggacagacgtggctcccaaagttcggcgtgccgttcatccccgg 1880935
Query: 397 gctgctgccgcagcagcaatcgggcaggatacactga 433
||| |||||||| |||| || || ||||||||||||
Sbjct: 1880934 cctgttgccgcaggagcagtcagggaggatacactga 1880898
Score = 60.0 bits (30), Expect = 1e-006
Identities = 60/70 (85%)
Strand = Plus / Minus
Query: 1 ggcgcagggccgcaaggagaggcggtcggtgggcggcaccgtcatccacaactgcaccgt 60
||||||||| |||||||||| || || | ||||||||| || ||||||||||||||| |
Sbjct: 1881330 ggcgcaggggcgcaaggagaagcactccgcgggcggcacggtgatccacaactgcaccat 1881271
Query: 61 cgcgccgcac 70
|| |||||||
Sbjct: 1881270 cgagccgcac 1881261
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
scaffold, whole genome shotgun sequence
Length = 13858245
Score = 319 bits (161), Expect = 1e-084
Identities = 293/337 (86%)
Strand = Plus / Minus
Query: 97 gttcaggaccttcctgggccgcccgtggaaggagcactcgcgcacgctctacatccagtc 156
||||| ||| ||||| |||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 10613544 gttcaagacgttcctcggccgcccgtggaaggagtactcgcggacgctctacatccagtc 10613485
Query: 157 ggagatcggcgggttcatcgacccgcagggctggctgccgtggctcggcgacttcggcct 216
|| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 10613484 cgacatcggcgggttcatcgacccgcaggggtggctgccgtggctcggcgacttcggcct 10613425
Query: 217 cagcacctgctactacgccaaggtggagaaccacgggcccggcgccaacatgagcgaacg 276
|| |||||||||||||||| |||||||||||| ||| ||||||| |||||||| | ||
Sbjct: 10613424 caacacctgctactacgccgaggtggagaaccgcggcgacggcgccgacatgagcaagcg 10613365
Query: 277 cgtaaagtggaggggtatcaagaacatcacctaccagcacgcgatgcagaagtacaccgt 336
|| |||||||| || |||||| |||| |||||||| ||| |||||||||||||||
Sbjct: 10613364 cgccaagtggagaggggtcaagacggtcacgtaccagcaggcgcagcagaagtacaccgt 10613305
Query: 337 cgagagcttcatccagggccagcactggctcccacagctcggcgtgccattcatcccggg 396
|||||| ||||||||||| ||| ||||||||| || |||||||||| |||||||| ||
Sbjct: 10613304 cgagaggttcatccagggacagacgtggctcccaaagttcggcgtgccgttcatccccgg 10613245
Query: 397 gctgctgccgcagcagcaatcgggcaggatacactga 433
||| |||||||| |||| || || ||||||||||||
Sbjct: 10613244 cctgttgccgcaggagcagtcagggaggatacactga 10613208
Score = 60.0 bits (30), Expect = 1e-006
Identities = 60/70 (85%)
Strand = Plus / Minus
Query: 1 ggcgcagggccgcaaggagaggcggtcggtgggcggcaccgtcatccacaactgcaccgt 60
||||||||| |||||||||| || || | ||||||||| || ||||||||||||||| |
Sbjct: 10613640 ggcgcaggggcgcaaggagaagcactccgcgggcggcacggtgatccacaactgcaccat 10613581
Query: 61 cgcgccgcac 70
|| |||||||
Sbjct: 10613580 cgagccgcac 10613571
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 319 bits (161), Expect = 1e-084
Identities = 293/337 (86%)
Strand = Plus / Minus
Query: 97 gttcaggaccttcctgggccgcccgtggaaggagcactcgcgcacgctctacatccagtc 156
||||| ||| ||||| |||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 10805906 gttcaagacgttcctcggccgcccgtggaaggagtactcgcggacgctctacatccagtc 10805847
Query: 157 ggagatcggcgggttcatcgacccgcagggctggctgccgtggctcggcgacttcggcct 216
|| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 10805846 cgacatcggcgggttcatcgacccgcaggggtggctgccgtggctcggcgacttcggcct 10805787
Query: 217 cagcacctgctactacgccaaggtggagaaccacgggcccggcgccaacatgagcgaacg 276
|| |||||||||||||||| |||||||||||| ||| ||||||| |||||||| | ||
Sbjct: 10805786 caacacctgctactacgccgaggtggagaaccgcggcgacggcgccgacatgagcaagcg 10805727
Query: 277 cgtaaagtggaggggtatcaagaacatcacctaccagcacgcgatgcagaagtacaccgt 336
|| |||||||| || |||||| |||| |||||||| ||| |||||||||||||||
Sbjct: 10805726 cgccaagtggagaggggtcaagacggtcacgtaccagcaggcgcagcagaagtacaccgt 10805667
Query: 337 cgagagcttcatccagggccagcactggctcccacagctcggcgtgccattcatcccggg 396
|||||| ||||||||||| ||| ||||||||| || |||||||||| |||||||| ||
Sbjct: 10805666 cgagaggttcatccagggacagacgtggctcccaaagttcggcgtgccgttcatccccgg 10805607
Query: 397 gctgctgccgcagcagcaatcgggcaggatacactga 433
||| |||||||| |||| || || ||||||||||||
Sbjct: 10805606 cctgttgccgcaggagcagtcagggaggatacactga 10805570
Score = 60.0 bits (30), Expect = 1e-006
Identities = 60/70 (85%)
Strand = Plus / Minus
Query: 1 ggcgcagggccgcaaggagaggcggtcggtgggcggcaccgtcatccacaactgcaccgt 60
||||||||| |||||||||| || || | ||||||||| || ||||||||||||||| |
Sbjct: 10806002 ggcgcaggggcgcaaggagaagcactccgcgggcggcacggtgatccacaactgcaccat 10805943
Query: 61 cgcgccgcac 70
|| |||||||
Sbjct: 10805942 cgagccgcac 10805933
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 319 bits (161), Expect = 1e-084
Identities = 293/337 (86%)
Strand = Plus / Minus
Query: 97 gttcaggaccttcctgggccgcccgtggaaggagcactcgcgcacgctctacatccagtc 156
||||| ||| ||||| |||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 10535418 gttcaagacgttcctcggccgcccgtggaaggagtactcgcggacgctctacatccagtc 10535359
Query: 157 ggagatcggcgggttcatcgacccgcagggctggctgccgtggctcggcgacttcggcct 216
|| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 10535358 cgacatcggcgggttcatcgacccgcaggggtggctgccgtggctcggcgacttcggcct 10535299
Query: 217 cagcacctgctactacgccaaggtggagaaccacgggcccggcgccaacatgagcgaacg 276
|| |||||||||||||||| |||||||||||| ||| ||||||| |||||||| | ||
Sbjct: 10535298 caacacctgctactacgccgaggtggagaaccgcggcgacggcgccgacatgagcaagcg 10535239
Query: 277 cgtaaagtggaggggtatcaagaacatcacctaccagcacgcgatgcagaagtacaccgt 336
|| |||||||| || |||||| |||| |||||||| ||| |||||||||||||||
Sbjct: 10535238 cgccaagtggagaggggtcaagacggtcacgtaccagcaggcgcagcagaagtacaccgt 10535179
Query: 337 cgagagcttcatccagggccagcactggctcccacagctcggcgtgccattcatcccggg 396
|||||| ||||||||||| ||| ||||||||| || |||||||||| |||||||| ||
Sbjct: 10535178 cgagaggttcatccagggacagacgtggctcccaaagttcggcgtgccgttcatccccgg 10535119
Query: 397 gctgctgccgcagcagcaatcgggcaggatacactga 433
||| |||||||| |||| || || ||||||||||||
Sbjct: 10535118 cctgttgccgcaggagcagtcagggaggatacactga 10535082
Score = 60.0 bits (30), Expect = 1e-006
Identities = 60/70 (85%)
Strand = Plus / Minus
Query: 1 ggcgcagggccgcaaggagaggcggtcggtgggcggcaccgtcatccacaactgcaccgt 60
||||||||| |||||||||| || || | ||||||||| || ||||||||||||||| |
Sbjct: 10535514 ggcgcaggggcgcaaggagaagcactccgcgggcggcacggtgatccacaactgcaccat 10535455
Query: 61 cgcgccgcac 70
|| |||||||
Sbjct: 10535454 cgagccgcac 10535445
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 319 bits (161), Expect = 1e-084
Identities = 293/337 (86%)
Strand = Plus / Minus
Query: 97 gttcaggaccttcctgggccgcccgtggaaggagcactcgcgcacgctctacatccagtc 156
||||| ||| ||||| |||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 10537317 gttcaagacgttcctcggccgcccgtggaaggagtactcgcggacgctctacatccagtc 10537258
Query: 157 ggagatcggcgggttcatcgacccgcagggctggctgccgtggctcggcgacttcggcct 216
|| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 10537257 cgacatcggcgggttcatcgacccgcaggggtggctgccgtggctcggcgacttcggcct 10537198
Query: 217 cagcacctgctactacgccaaggtggagaaccacgggcccggcgccaacatgagcgaacg 276
|| |||||||||||||||| |||||||||||| ||| ||||||| |||||||| | ||
Sbjct: 10537197 caacacctgctactacgccgaggtggagaaccgcggcgacggcgccgacatgagcaagcg 10537138
Query: 277 cgtaaagtggaggggtatcaagaacatcacctaccagcacgcgatgcagaagtacaccgt 336
|| |||||||| || |||||| |||| |||||||| ||| |||||||||||||||
Sbjct: 10537137 cgccaagtggagaggggtcaagacggtcacgtaccagcaggcgcagcagaagtacaccgt 10537078
Query: 337 cgagagcttcatccagggccagcactggctcccacagctcggcgtgccattcatcccggg 396
|||||| ||||||||||| ||| ||||||||| || |||||||||| |||||||| ||
Sbjct: 10537077 cgagaggttcatccagggacagacgtggctcccaaagttcggcgtgccgttcatccccgg 10537018
Query: 397 gctgctgccgcagcagcaatcgggcaggatacactga 433
||| |||||||| |||| || || ||||||||||||
Sbjct: 10537017 cctgttgccgcaggagcagtcagggaggatacactga 10536981
Score = 60.0 bits (30), Expect = 1e-006
Identities = 60/70 (85%)
Strand = Plus / Minus
Query: 1 ggcgcagggccgcaaggagaggcggtcggtgggcggcaccgtcatccacaactgcaccgt 60
||||||||| |||||||||| || || | ||||||||| || ||||||||||||||| |
Sbjct: 10537413 ggcgcaggggcgcaaggagaagcactccgcgggcggcacggtgatccacaactgcaccat 10537354
Query: 61 cgcgccgcac 70
|| |||||||
Sbjct: 10537353 cgagccgcac 10537344
>gb|CB651164.1|CB651164 OSJNEb16A10.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb16A10 3', mRNA sequence
Length = 792
Score = 48.1 bits (24), Expect = 0.006
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 107 ttcctgggccgcccgtggaaggagcactcgcg 138
||||||||||| |||||||||||| |||||||
Sbjct: 457 ttcctgggccggccgtggaaggagtactcgcg 426
>gb|CB675160.1|CB675160 OSJNEe10L01.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe10L01 3', mRNA sequence
Length = 572
Score = 48.1 bits (24), Expect = 0.006
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 107 ttcctgggccgcccgtggaaggagcactcgcg 138
||||||||||| |||||||||||| |||||||
Sbjct: 435 ttcctgggccggccgtggaaggagtactcgcg 404
>dbj|AK071728.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023112F11, full
insert sequence
Length = 2119
Score = 48.1 bits (24), Expect = 0.006
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 44 atccacaactgcaccgtcgcgccgcacccgga 75
|||||||||||||| || ||||||||||||||
Sbjct: 1423 atccacaactgcacggtggcgccgcacccgga 1454
>dbj|AK109763.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-146-H03, full
insert sequence
Length = 1859
Score = 48.1 bits (24), Expect = 0.006
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 107 ttcctgggccgcccgtggaaggagcactcgcg 138
||||||||||| |||||||||||| |||||||
Sbjct: 1399 ttcctgggccggccgtggaaggagtactcgcg 1430
>dbj|AK120977.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023041N03, full
insert sequence
Length = 1849
Score = 48.1 bits (24), Expect = 0.006
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 107 ttcctgggccgcccgtggaaggagcactcgcg 138
||||||||||| |||||||||||| |||||||
Sbjct: 1399 ttcctgggccggccgtggaaggagtactcgcg 1430
>dbj|AP003345.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0415A04
Length = 160669
Score = 48.1 bits (24), Expect = 0.006
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 107 ttcctgggccgcccgtggaaggagcactcgcg 138
||||||||||| |||||||||||| |||||||
Sbjct: 129043 ttcctgggccggccgtggaaggagtactcgcg 129074
>gb|AACV01002476.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002476, whole
genome shotgun sequence
Length = 16268
Score = 48.1 bits (24), Expect = 0.006
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 107 ttcctgggccgcccgtggaaggagcactcgcg 138
||||||||||| |||||||||||| |||||||
Sbjct: 14676 ttcctgggccggccgtggaaggagtactcgcg 14645
>gb|AACV01017055.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg017055,
whole genome shotgun sequence
Length = 2557
Score = 48.1 bits (24), Expect = 0.006
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 44 atccacaactgcaccgtcgcgccgcacccgga 75
|||||||||||||| || ||||||||||||||
Sbjct: 568 atccacaactgcacggtggcgccgcacccgga 537
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 48.1 bits (24), Expect = 0.006
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 107 ttcctgggccgcccgtggaaggagcactcgcg 138
||||||||||| |||||||||||| |||||||
Sbjct: 33533547 ttcctgggccggccgtggaaggagtactcgcg 33533578
Score = 44.1 bits (22), Expect = 0.086
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 109 cctgggccgcccgtggaaggagcactcgcgcacg 142
||||||||| || ||||||||| |||||||||||
Sbjct: 38281310 cctgggccggccctggaaggagtactcgcgcacg 38281277
>ref|NM_190847.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1692
Score = 48.1 bits (24), Expect = 0.006
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 107 ttcctgggccgcccgtggaaggagcactcgcg 138
||||||||||| |||||||||||| |||||||
Sbjct: 1393 ttcctgggccggccgtggaaggagtactcgcg 1424
>ref|XM_479611.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2119
Score = 48.1 bits (24), Expect = 0.006
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 44 atccacaactgcaccgtcgcgccgcacccgga 75
|||||||||||||| || ||||||||||||||
Sbjct: 1423 atccacaactgcacggtggcgccgcacccgga 1454
>ref|NT_079927.2| Oryza sativa (japonica cultivar-group)
Length = 14818989
Score = 48.1 bits (24), Expect = 0.006
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 107 ttcctgggccgcccgtggaaggagcactcgcg 138
||||||||||| |||||||||||| |||||||
Sbjct: 7980930 ttcctgggccggccgtggaaggagtactcgcg 7980961
Score = 44.1 bits (22), Expect = 0.086
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 109 cctgggccgcccgtggaaggagcactcgcgcacg 142
||||||||| || ||||||||| |||||||||||
Sbjct: 12728693 cctgggccggccctggaaggagtactcgcgcacg 12728660
>dbj|AP004316.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
clone:P0597G07
Length = 152928
Score = 48.1 bits (24), Expect = 0.006
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 44 atccacaactgcaccgtcgcgccgcacccgga 75
|||||||||||||| || ||||||||||||||
Sbjct: 124662 atccacaactgcacggtggcgccgcacccgga 124693
>ref|NT_079899.2| Oryza sativa (japonica cultivar-group)
Length = 17249721
Score = 48.1 bits (24), Expect = 0.006
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 44 atccacaactgcaccgtcgcgccgcacccgga 75
|||||||||||||| || ||||||||||||||
Sbjct: 16948978 atccacaactgcacggtggcgccgcacccgga 16949009
Score = 42.1 bits (21), Expect = 0.34
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 476 atatgacgtggcactaacatg 496
|||||||||||||||||||||
Sbjct: 4846746 atatgacgtggcactaacatg 4846726
>gb|CH401226.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000063 genomic
scaffold, whole genome shotgun sequence
Length = 15204090
Score = 48.1 bits (24), Expect = 0.006
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 44 atccacaactgcaccgtcgcgccgcacccgga 75
|||||||||||||| || ||||||||||||||
Sbjct: 14934539 atccacaactgcacggtggcgccgcacccgga 14934570
Score = 42.1 bits (21), Expect = 0.34
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 476 atatgacgtggcactaacatg 496
|||||||||||||||||||||
Sbjct: 2917422 atatgacgtggcactaacatg 2917402
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 48.1 bits (24), Expect = 0.006
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 107 ttcctgggccgcccgtggaaggagcactcgcg 138
||||||||||| |||||||||||| |||||||
Sbjct: 7913595 ttcctgggccggccgtggaaggagtactcgcg 7913626
Score = 44.1 bits (22), Expect = 0.086
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 109 cctgggccgcccgtggaaggagcactcgcgcacg 142
||||||||| || ||||||||| |||||||||||
Sbjct: 12464248 cctgggccggccctggaaggagtactcgcgcacg 12464215
Score = 44.1 bits (22), Expect = 0.086
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 109 cctgggccgcccgtggaaggagcactcgcgcacg 142
||||||||| || ||||||||| |||||||||||
Sbjct: 12462788 cctgggccggccctggaaggagtactcgcgcacg 12462755
>gb|CM000144.1| Oryza sativa (japonica cultivar-group) chromosome 7, whole genome shotgun
sequence
Length = 28626509
Score = 48.1 bits (24), Expect = 0.006
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 44 atccacaactgcaccgtcgcgccgcacccgga 75
|||||||||||||| || ||||||||||||||
Sbjct: 28333978 atccacaactgcacggtggcgccgcacccgga 28334009
Score = 42.1 bits (21), Expect = 0.34
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 476 atatgacgtggcactaacatg 496
|||||||||||||||||||||
Sbjct: 16316861 atatgacgtggcactaacatg 16316841
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 48.1 bits (24), Expect = 0.006
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 107 ttcctgggccgcccgtggaaggagcactcgcg 138
||||||||||| |||||||||||| |||||||
Sbjct: 33115316 ttcctgggccggccgtggaaggagtactcgcg 33115347
Score = 44.1 bits (22), Expect = 0.086
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 109 cctgggccgcccgtggaaggagcactcgcgcacg 142
||||||||| || ||||||||| |||||||||||
Sbjct: 37665969 cctgggccggccctggaaggagtactcgcgcacg 37665936
Score = 44.1 bits (22), Expect = 0.086
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 109 cctgggccgcccgtggaaggagcactcgcgcacg 142
||||||||| || ||||||||| |||||||||||
Sbjct: 37664509 cctgggccggccctggaaggagtactcgcgcacg 37664476
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 48.1 bits (24), Expect = 0.006
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 107 ttcctgggccgcccgtggaaggagcactcgcg 138
||||||||||| |||||||||||| |||||||
Sbjct: 33452877 ttcctgggccggccgtggaaggagtactcgcg 33452908
Score = 44.1 bits (22), Expect = 0.086
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 109 cctgggccgcccgtggaaggagcactcgcgcacg 142
||||||||| || ||||||||| |||||||||||
Sbjct: 38200640 cctgggccggccctggaaggagtactcgcgcacg 38200607
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
sequence
Length = 29644043
Score = 48.1 bits (24), Expect = 0.006
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 44 atccacaactgcaccgtcgcgccgcacccgga 75
|||||||||||||| || ||||||||||||||
Sbjct: 29335973 atccacaactgcacggtggcgccgcacccgga 29336004
Score = 42.1 bits (21), Expect = 0.34
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 476 atatgacgtggcactaacatg 496
|||||||||||||||||||||
Sbjct: 17223671 atatgacgtggcactaacatg 17223651
>dbj|AP003405.1| Oryza sativa (japonica cultivar-group) chromosome 1 clone B1027B04, ***
SEQUENCING IN PROGRESS ***
Length = 168033
Score = 44.1 bits (22), Expect = 0.086
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 109 cctgggccgcccgtggaaggagcactcgcgcacg 142
||||||||| || ||||||||| |||||||||||
Sbjct: 16317 cctgggccggccctggaaggagtactcgcgcacg 16284
>dbj|AK101962.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033076D13, full
insert sequence
Length = 1829
Score = 44.1 bits (22), Expect = 0.086
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 109 cctgggccgcccgtggaaggagcactcgcgcacg 142
||||||||| || ||||||||| |||||||||||
Sbjct: 1399 cctgggccggccctggaaggagtactcgcgcacg 1432
>dbj|AK105682.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-B06, full
insert sequence
Length = 1731
Score = 44.1 bits (22), Expect = 0.086
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 109 cctgggccgcccgtggaaggagcactcgcgcacg 142
||||||||| || ||||||||| |||||||||||
Sbjct: 1398 cctgggccggccctggaaggagtactcgcgcacg 1431
>gb|AACV01002791.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002791,
whole genome shotgun sequence
Length = 1642
Score = 44.1 bits (22), Expect = 0.086
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 109 cctgggccgcccgtggaaggagcactcgcgcacg 142
||||||||| || ||||||||| |||||||||||
Sbjct: 102 cctgggccggccctggaaggagtactcgcgcacg 135
>gb|AACV01002792.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002792, whole
genome shotgun sequence
Length = 4701
Score = 44.1 bits (22), Expect = 0.086
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 109 cctgggccgcccgtggaaggagcactcgcgcacg 142
||||||||| || ||||||||| |||||||||||
Sbjct: 3393 cctgggccggccctggaaggagtactcgcgcacg 3426
>ref|NM_190160.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1623
Score = 44.1 bits (22), Expect = 0.086
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 109 cctgggccgcccgtggaaggagcactcgcgcacg 142
||||||||| || ||||||||| |||||||||||
Sbjct: 1353 cctgggccggccctggaaggagtactcgcgcacg 1386
>dbj|AP003227.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0018C10
Length = 200183
Score = 44.1 bits (22), Expect = 0.086
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 109 cctgggccgcccgtggaaggagcactcgcgcacg 142
||||||||| || ||||||||| |||||||||||
Sbjct: 119874 cctgggccggccctggaaggagtactcgcgcacg 119841
>gb|AQ912682.1|AQ912682 nbeb0038G01f CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0038G01f, DNA sequence
Length = 418
Score = 42.1 bits (21), Expect = 0.34
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 476 atatgacgtggcactaacatg 496
|||||||||||||||||||||
Sbjct: 169 atatgacgtggcactaacatg 189
>gb|AZ128655.1|AZ128655 OSJNBb0099F23r CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone OSJNBb0099F23r, DNA
sequence
Length = 482
Score = 42.1 bits (21), Expect = 0.34
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 476 atatgacgtggcactaacatg 496
|||||||||||||||||||||
Sbjct: 137 atatgacgtggcactaacatg 157
>gb|AACV01016171.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg016171, whole
genome shotgun sequence
Length = 25017
Score = 42.1 bits (21), Expect = 0.34
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 476 atatgacgtggcactaacatg 496
|||||||||||||||||||||
Sbjct: 8087 atatgacgtggcactaacatg 8107
>dbj|AP005261.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
clone:P0640E12
Length = 167353
Score = 42.1 bits (21), Expect = 0.34
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 476 atatgacgtggcactaacatg 496
|||||||||||||||||||||
Sbjct: 28796 atatgacgtggcactaacatg 28776
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 753,718
Number of Sequences: 438736
Number of extensions: 753718
Number of successful extensions: 16219
Number of sequences better than 0.5: 39
Number of HSP's better than 0.5 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15566
Number of HSP's gapped (non-prelim): 653
length of query: 606
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 585
effective length of database: 2,791,206,460
effective search space: 1632855779100
effective search space used: 1632855779100
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)