BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3802264.2.1
(1189 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK100098.1| Oryza sativa (japonica cultivar-group) cDNA... 478 e-132
dbj|AK100190.1| Oryza sativa (japonica cultivar-group) cDNA... 478 e-132
dbj|AK106971.1| Oryza sativa (japonica cultivar-group) cDNA... 478 e-132
ref|XM_468087.1| Oryza sativa (japonica cultivar-group), mRNA 478 e-132
ref|XM_507008.2| PREDICTED Oryza sativa (japonica cultivar-... 478 e-132
ref|XM_507537.1| PREDICTED Oryza sativa (japonica cultivar-... 478 e-132
gb|AACV01005523.1| Oryza sativa (japonica cultivar-group) c... 367 9e-099
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 367 9e-099
dbj|AP004846.3| Oryza sativa (japonica cultivar-group) geno... 367 9e-099
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 367 9e-099
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 367 9e-099
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 367 9e-099
gb|AU183606.1|AU183606 AU183606 Rice panicle at flowering s... 123 2e-025
dbj|AK106851.1| Oryza sativa (japonica cultivar-group) cDNA... 76 5e-011
dbj|AP005657.3| Oryza sativa (japonica cultivar-group) geno... 76 5e-011
gb|AACV01017130.1| Oryza sativa (japonica cultivar-group) c... 76 5e-011
ref|XM_479767.1| Oryza sativa (japonica cultivar-group), mRNA 76 5e-011
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 76 5e-011
gb|CH401228.1| Oryza sativa (japonica cultivar-group) chrom... 76 5e-011
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 76 5e-011
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 76 5e-011
dbj|AK105580.1| Oryza sativa (japonica cultivar-group) cDNA... 66 5e-008
dbj|AP007149.1| Oryza sativa (japonica cultivar-group) geno... 66 5e-008
dbj|AP006453.3| Oryza sativa (japonica cultivar-group) geno... 66 5e-008
gb|AACV01019888.1| Oryza sativa (japonica cultivar-group) c... 66 5e-008
ref|XM_450899.1| Oryza sativa (japonica cultivar-group), mRNA 66 5e-008
ref|NT_107083.1| Oryza sativa (japonica cultivar-group) 66 5e-008
gb|CH401242.1| Oryza sativa (japonica cultivar-group) chrom... 66 5e-008
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 66 5e-008
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 66 5e-008
dbj|AK063458.1| Oryza sativa (japonica cultivar-group) cDNA... 54 2e-004
dbj|AK099370.1| Oryza sativa (japonica cultivar-group) cDNA... 54 2e-004
gb|AC135914.2| Oryza sativa (japonica cultivar-group) chrom... 54 2e-004
gb|AACV01011153.1| Oryza sativa (japonica cultivar-group) c... 54 2e-004
ref|XM_476150.1| Oryza sativa (japonica cultivar-group), p... 54 2e-004
ref|NT_107225.1| Oryza sativa (japonica cultivar-group) 54 2e-004
gb|CH401191.1| Oryza sativa (japonica cultivar-group) chrom... 54 2e-004
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 54 2e-004
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 54 2e-004
gb|AU173081.1|AU173081 AU173081 Rice root Oryza sativa (jap... 52 7e-004
dbj|AK121369.1| Oryza sativa (japonica cultivar-group) cDNA... 52 7e-004
ref|NT_107234.1| Oryza sativa (japonica cultivar-group) 52 7e-004
dbj|AP003614.2| Oryza sativa (japonica cultivar-group) geno... 52 7e-004
gb|AACV01010055.1| Oryza sativa (japonica cultivar-group) c... 52 7e-004
gb|AACV01014925.1| Oryza sativa (japonica cultivar-group) c... 52 7e-004
gb|AACV01015966.1| Oryza sativa (japonica cultivar-group) c... 52 7e-004
ref|XM_472631.1| Oryza sativa (japonica cultivar-group), p... 52 7e-004
ref|XM_473037.1| Oryza sativa (japonica cultivar-group), p... 52 7e-004
ref|NT_079862.2| Oryza sativa (japonica cultivar-group) 52 7e-004
ref|NT_079863.2| Oryza sativa (japonica cultivar-group) 52 7e-004
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 52 7e-004
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 52 7e-004
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 52 7e-004
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 52 7e-004
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 52 7e-004
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 52 7e-004
emb|AL606627.3|OSJN00052 Oryza sativa genomic DNA, chromoso... 52 7e-004
emb|BX548155.1|OSJN00293 Oryza sativa genomic DNA, chromoso... 52 7e-004
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 52 7e-004
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 52 7e-004
dbj|AP004555.1| Oryza sativa (japonica cultivar-group) chro... 46 0.044
dbj|AK071784.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.044
dbj|AK106887.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.044
dbj|AP004689.3| Oryza sativa (japonica cultivar-group) geno... 46 0.044
dbj|AP003722.3| Oryza sativa (japonica cultivar-group) geno... 46 0.044
gb|AACV01000869.1| Oryza sativa (japonica cultivar-group) c... 46 0.044
gb|AACV01018368.1| Oryza sativa (japonica cultivar-group) c... 46 0.044
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 46 0.044
ref|NM_183708.1| Oryza sativa (japonica cultivar-group), p... 46 0.044
ref|XM_482166.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.044
ref|NT_079961.2| Oryza sativa (japonica cultivar-group) 46 0.044
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.044
gb|CH401165.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.044
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.044
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 46 0.044
dbj|AP003741.1| Oryza sativa (japonica cultivar-group) chro... 44 0.17
dbj|AP004297.1| Oryza sativa (japonica cultivar-group) chro... 44 0.17
dbj|AK099698.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.17
dbj|AK119913.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.17
dbj|AP005112.3| Oryza sativa (japonica cultivar-group) geno... 44 0.17
dbj|AP005774.5| Oryza sativa (japonica cultivar-group) geno... 44 0.17
gb|AACV01005373.1| Oryza sativa (japonica cultivar-group) c... 44 0.17
gb|AACV01010580.1| Oryza sativa (japonica cultivar-group) c... 44 0.17
gb|AACV01010653.1| Oryza sativa (japonica cultivar-group) c... 44 0.17
gb|AACV01015509.1| Oryza sativa (japonica cultivar-group) c... 44 0.17
ref|XM_467689.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.17
ref|XM_474329.1| Oryza sativa (japonica cultivar-group), p... 44 0.17
ref|NT_107201.1| Oryza sativa (japonica cultivar-group) 44 0.17
ref|NT_079879.2| Oryza sativa (japonica cultivar-group) 44 0.17
gb|CH401221.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.17
emb|AL606635.3|OSJN00057 Oryza sativa genomic DNA, chromoso... 44 0.17
emb|AL606457.3|OSJN00002 Oryza sativa genomic DNA, chromoso... 44 0.17
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 44 0.17
>dbj|AK100098.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023004D19, full
insert sequence
Length = 1737
Score = 478 bits (241), Expect = e-132
Identities = 370/413 (89%)
Strand = Plus / Plus
Query: 79 aacaaggcgaagctgctgttcacgttcgccaagagccacctgggcagctacgacggcgag 138
|||||||| |||||||||||| ||||||||||| |||| ||| | |||||||||||||
Sbjct: 728 aacaaggccaagctgctgttccagttcgccaagacgcaccagggaacctacgacggcgag 787
Query: 139 tgccccttctactgctcctactcgggctacaacgacgagctgctgtgggccgcgacctgg 198
||||||||||||||||||||||| ||||||||||| ||| |||||||||| ||||| |||
Sbjct: 788 tgccccttctactgctcctactccggctacaacgatgagttgctgtgggcggcgacgtgg 847
Query: 199 ctgtacctggcgacgaggcggcaggtgtacgcggacttcatcgcccacgaggccatctcg 258
|||||||||||||||| | |||||||||||||||||||||||| |||||||| ||||||
Sbjct: 848 ctgtacctggcgacgaagaggcaggtgtacgcggacttcatcgggcacgaggcgatctcg 907
Query: 259 tcgagcgtggccgagttcagctgggacctcaagttccccggcgcgcaggtgctgctggcc 318
|||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||
Sbjct: 908 tcgagcgtggccgagttcagctgggacctcaagttcccgggcgcgcaggtgctcctcgcg 967
Query: 319 gagttcaacatgacctcggcgggcggcgcgcagaacttcaagtcgcaggcggacaacttc 378
||| |||||||||| || |||||| |||| ||||||||| ||||| |||||||||
Sbjct: 968 gagctcaacatgacatccagcggcggcctccagagcttcaagtcccaggccgacaacttc 1027
Query: 379 gtgtgcgcggtgctgccggacacggcgttccaccaggtgttcatcaccccgggcggcgtg 438
|||||||| ||||| |||||||| ||||||||||||||| |||||||||||||||| ||
Sbjct: 1028 gtgtgcgccgtgctcccggacaccccgttccaccaggtgtccatcaccccgggcggcatg 1087
Query: 439 atccacctccgcgacggcgccaactcgcagtacgtgaccagcacggcgttcct 491
|||||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct: 1088 atccacctccgcgacggcgccaactcccagtacgtcaccagcacggccttcct 1140
Score = 206 bits (104), Expect = 2e-050
Identities = 269/324 (83%)
Strand = Plus / Plus
Query: 588 gcagcagatggactacctgctgggcgccaacccgaggcacagctcctacgtcgtgggctt 647
||||||||| |||||||| || |||||||||||| | | ||||||||||||| |||||
Sbjct: 1237 gcagcagatcgactacctcctcggcgccaacccgcgcggccgctcctacgtcgtcggctt 1296
Query: 648 cggcgccaacccgcccacgcagccgcaccaccgcggcgcatccacccccgtgctgccccc 707
||||| ||||||||||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct: 1297 cggcgtcaacccgcccacgcagccgcaccaccgcggcgcctccaccccggtgctcccccc 1356
Query: 708 cggcacggacgtcaactgcggcctcagcttcggggactggatggcgcccgacaagcccaa 767
||| | ||||||||||| | |||||| | || ||| | | |||||| ||||||
Sbjct: 1357 gggctaccaggtcaactgcgggatgagcttcagcgagtggttcacccccgaccggcccaa 1416
Query: 768 ccccaacgagctcaccggcgccatcgtcggcgggcccgacaagaacgacggcttcgtgga 827
||||||||||||||||||||| ||| | ||||| |||||| |||| |||| ||
Sbjct: 1417 ccccaacgagctcaccggcgcgatcatgggcggccccgacggcggcgacaacttctccga 1476
Query: 828 caagcgcggcaactcctcctacaccgagccctgcacctacatcaactccctcgccatcgg 887
|||||| |||||||| |||| ||||||||| ||||| ||||||||||||||| |||| ||
Sbjct: 1477 caagcgtggcaactcgtcctgcaccgagccttgcacgtacatcaactccctctccattgg 1536
Query: 888 cccgctcgccgcgctcgccgtccg 911
||| |||||||| |||||| ||||
Sbjct: 1537 ccccctcgccgccctcgccatccg 1560
>dbj|AK100190.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023035K01, full
insert sequence
Length = 1719
Score = 478 bits (241), Expect = e-132
Identities = 370/413 (89%)
Strand = Plus / Plus
Query: 79 aacaaggcgaagctgctgttcacgttcgccaagagccacctgggcagctacgacggcgag 138
|||||||| |||||||||||| ||||||||||| |||| ||| | |||||||||||||
Sbjct: 711 aacaaggccaagctgctgttccagttcgccaagacgcaccagggaacctacgacggcgag 770
Query: 139 tgccccttctactgctcctactcgggctacaacgacgagctgctgtgggccgcgacctgg 198
||||||||||||||||||||||| ||||||||||| ||| |||||||||| ||||| |||
Sbjct: 771 tgccccttctactgctcctactccggctacaacgatgagttgctgtgggcggcgacgtgg 830
Query: 199 ctgtacctggcgacgaggcggcaggtgtacgcggacttcatcgcccacgaggccatctcg 258
|||||||||||||||| | |||||||||||||||||||||||| |||||||| ||||||
Sbjct: 831 ctgtacctggcgacgaagaggcaggtgtacgcggacttcatcgggcacgaggcgatctcg 890
Query: 259 tcgagcgtggccgagttcagctgggacctcaagttccccggcgcgcaggtgctgctggcc 318
|||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||
Sbjct: 891 tcgagcgtggccgagttcagctgggacctcaagttcccgggcgcgcaggtgctcctcgcg 950
Query: 319 gagttcaacatgacctcggcgggcggcgcgcagaacttcaagtcgcaggcggacaacttc 378
||| |||||||||| || |||||| |||| ||||||||| ||||| |||||||||
Sbjct: 951 gagctcaacatgacatccagcggcggcctccagagcttcaagtcccaggccgacaacttc 1010
Query: 379 gtgtgcgcggtgctgccggacacggcgttccaccaggtgttcatcaccccgggcggcgtg 438
|||||||| ||||| |||||||| ||||||||||||||| |||||||||||||||| ||
Sbjct: 1011 gtgtgcgccgtgctcccggacaccccgttccaccaggtgtccatcaccccgggcggcatg 1070
Query: 439 atccacctccgcgacggcgccaactcgcagtacgtgaccagcacggcgttcct 491
|||||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct: 1071 atccacctccgcgacggcgccaactcccagtacgtcaccagcacggccttcct 1123
Score = 206 bits (104), Expect = 2e-050
Identities = 269/324 (83%)
Strand = Plus / Plus
Query: 588 gcagcagatggactacctgctgggcgccaacccgaggcacagctcctacgtcgtgggctt 647
||||||||| |||||||| || |||||||||||| | | ||||||||||||| |||||
Sbjct: 1220 gcagcagatcgactacctcctcggcgccaacccgcgcggccgctcctacgtcgtcggctt 1279
Query: 648 cggcgccaacccgcccacgcagccgcaccaccgcggcgcatccacccccgtgctgccccc 707
||||| ||||||||||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct: 1280 cggcgtcaacccgcccacgcagccgcaccaccgcggcgcctccaccccggtgctcccccc 1339
Query: 708 cggcacggacgtcaactgcggcctcagcttcggggactggatggcgcccgacaagcccaa 767
||| | ||||||||||| | |||||| | || ||| | | |||||| ||||||
Sbjct: 1340 gggctaccaggtcaactgcgggatgagcttcagcgagtggttcacccccgaccggcccaa 1399
Query: 768 ccccaacgagctcaccggcgccatcgtcggcgggcccgacaagaacgacggcttcgtgga 827
||||||||||||||||||||| ||| | ||||| |||||| |||| |||| ||
Sbjct: 1400 ccccaacgagctcaccggcgcgatcatgggcggccccgacggcggcgacaacttctccga 1459
Query: 828 caagcgcggcaactcctcctacaccgagccctgcacctacatcaactccctcgccatcgg 887
|||||| |||||||| |||| ||||||||| ||||| ||||||||||||||| |||| ||
Sbjct: 1460 caagcgtggcaactcgtcctgcaccgagccttgcacgtacatcaactccctctccattgg 1519
Query: 888 cccgctcgccgcgctcgccgtccg 911
||| |||||||| |||||| ||||
Sbjct: 1520 ccccctcgccgccctcgccatccg 1543
>dbj|AK106971.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-119-G05, full
insert sequence
Length = 2276
Score = 478 bits (241), Expect = e-132
Identities = 370/413 (89%)
Strand = Plus / Plus
Query: 79 aacaaggcgaagctgctgttcacgttcgccaagagccacctgggcagctacgacggcgag 138
|||||||| |||||||||||| ||||||||||| |||| ||| | |||||||||||||
Sbjct: 722 aacaaggccaagctgctgttccagttcgccaagacgcaccagggaacctacgacggcgag 781
Query: 139 tgccccttctactgctcctactcgggctacaacgacgagctgctgtgggccgcgacctgg 198
||||||||||||||||||||||| ||||||||||| ||| |||||||||| ||||| |||
Sbjct: 782 tgccccttctactgctcctactccggctacaacgatgagttgctgtgggcggcgacgtgg 841
Query: 199 ctgtacctggcgacgaggcggcaggtgtacgcggacttcatcgcccacgaggccatctcg 258
|||||||||||||||| | |||||||||||||||||||||||| |||||||| ||||||
Sbjct: 842 ctgtacctggcgacgaagaggcaggtgtacgcggacttcatcgggcacgaggcgatctcg 901
Query: 259 tcgagcgtggccgagttcagctgggacctcaagttccccggcgcgcaggtgctgctggcc 318
|||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||
Sbjct: 902 tcgagcgtggccgagttcagctgggacctcaagttcccgggcgcgcaggtgctcctcgcg 961
Query: 319 gagttcaacatgacctcggcgggcggcgcgcagaacttcaagtcgcaggcggacaacttc 378
||| |||||||||| || |||||| |||| ||||||||| ||||| |||||||||
Sbjct: 962 gagctcaacatgacatccagcggcggcctccagagcttcaagtcccaggccgacaacttc 1021
Query: 379 gtgtgcgcggtgctgccggacacggcgttccaccaggtgttcatcaccccgggcggcgtg 438
|||||||| ||||| |||||||| ||||||||||||||| |||||||||||||||| ||
Sbjct: 1022 gtgtgcgccgtgctcccggacaccccgttccaccaggtgtccatcaccccgggcggcatg 1081
Query: 439 atccacctccgcgacggcgccaactcgcagtacgtgaccagcacggcgttcct 491
|||||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct: 1082 atccacctccgcgacggcgccaactcccagtacgtcaccagcacggccttcct 1134
Score = 206 bits (104), Expect = 2e-050
Identities = 269/324 (83%)
Strand = Plus / Plus
Query: 588 gcagcagatggactacctgctgggcgccaacccgaggcacagctcctacgtcgtgggctt 647
||||||||| |||||||| || |||||||||||| | | ||||||||||||| |||||
Sbjct: 1231 gcagcagatcgactacctcctcggcgccaacccgcgcggccgctcctacgtcgtcggctt 1290
Query: 648 cggcgccaacccgcccacgcagccgcaccaccgcggcgcatccacccccgtgctgccccc 707
||||| ||||||||||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct: 1291 cggcgtcaacccgcccacgcagccgcaccaccgcggcgcctccaccccggtgctcccccc 1350
Query: 708 cggcacggacgtcaactgcggcctcagcttcggggactggatggcgcccgacaagcccaa 767
||| | ||||||||||| | |||||| | || ||| | | |||||| ||||||
Sbjct: 1351 gggctaccaggtcaactgcgggatgagcttcagcgagtggttcacccccgaccggcccaa 1410
Query: 768 ccccaacgagctcaccggcgccatcgtcggcgggcccgacaagaacgacggcttcgtgga 827
||||||||||||||||||||| ||| | ||||| |||||| |||| |||| ||
Sbjct: 1411 ccccaacgagctcaccggcgcgatcatgggcggccccgacggcggcgacaacttctccga 1470
Query: 828 caagcgcggcaactcctcctacaccgagccctgcacctacatcaactccctcgccatcgg 887
|||||| |||||||| |||| ||||||||| ||||| ||||||||||||||| |||| ||
Sbjct: 1471 caagcgtggcaactcgtcctgcaccgagccttgcacgtacatcaactccctctccattgg 1530
Query: 888 cccgctcgccgcgctcgccgtccg 911
||| |||||||| |||||| ||||
Sbjct: 1531 ccccctcgccgccctcgccatccg 1554
>ref|XM_468087.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1719
Score = 478 bits (241), Expect = e-132
Identities = 370/413 (89%)
Strand = Plus / Plus
Query: 79 aacaaggcgaagctgctgttcacgttcgccaagagccacctgggcagctacgacggcgag 138
|||||||| |||||||||||| ||||||||||| |||| ||| | |||||||||||||
Sbjct: 711 aacaaggccaagctgctgttccagttcgccaagacgcaccagggaacctacgacggcgag 770
Query: 139 tgccccttctactgctcctactcgggctacaacgacgagctgctgtgggccgcgacctgg 198
||||||||||||||||||||||| ||||||||||| ||| |||||||||| ||||| |||
Sbjct: 771 tgccccttctactgctcctactccggctacaacgatgagttgctgtgggcggcgacgtgg 830
Query: 199 ctgtacctggcgacgaggcggcaggtgtacgcggacttcatcgcccacgaggccatctcg 258
|||||||||||||||| | |||||||||||||||||||||||| |||||||| ||||||
Sbjct: 831 ctgtacctggcgacgaagaggcaggtgtacgcggacttcatcgggcacgaggcgatctcg 890
Query: 259 tcgagcgtggccgagttcagctgggacctcaagttccccggcgcgcaggtgctgctggcc 318
|||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||
Sbjct: 891 tcgagcgtggccgagttcagctgggacctcaagttcccgggcgcgcaggtgctcctcgcg 950
Query: 319 gagttcaacatgacctcggcgggcggcgcgcagaacttcaagtcgcaggcggacaacttc 378
||| |||||||||| || |||||| |||| ||||||||| ||||| |||||||||
Sbjct: 951 gagctcaacatgacatccagcggcggcctccagagcttcaagtcccaggccgacaacttc 1010
Query: 379 gtgtgcgcggtgctgccggacacggcgttccaccaggtgttcatcaccccgggcggcgtg 438
|||||||| ||||| |||||||| ||||||||||||||| |||||||||||||||| ||
Sbjct: 1011 gtgtgcgccgtgctcccggacaccccgttccaccaggtgtccatcaccccgggcggcatg 1070
Query: 439 atccacctccgcgacggcgccaactcgcagtacgtgaccagcacggcgttcct 491
|||||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct: 1071 atccacctccgcgacggcgccaactcccagtacgtcaccagcacggccttcct 1123
Score = 206 bits (104), Expect = 2e-050
Identities = 269/324 (83%)
Strand = Plus / Plus
Query: 588 gcagcagatggactacctgctgggcgccaacccgaggcacagctcctacgtcgtgggctt 647
||||||||| |||||||| || |||||||||||| | | ||||||||||||| |||||
Sbjct: 1220 gcagcagatcgactacctcctcggcgccaacccgcgcggccgctcctacgtcgtcggctt 1279
Query: 648 cggcgccaacccgcccacgcagccgcaccaccgcggcgcatccacccccgtgctgccccc 707
||||| ||||||||||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct: 1280 cggcgtcaacccgcccacgcagccgcaccaccgcggcgcctccaccccggtgctcccccc 1339
Query: 708 cggcacggacgtcaactgcggcctcagcttcggggactggatggcgcccgacaagcccaa 767
||| | ||||||||||| | |||||| | || ||| | | |||||| ||||||
Sbjct: 1340 gggctaccaggtcaactgcgggatgagcttcagcgagtggttcacccccgaccggcccaa 1399
Query: 768 ccccaacgagctcaccggcgccatcgtcggcgggcccgacaagaacgacggcttcgtgga 827
||||||||||||||||||||| ||| | ||||| |||||| |||| |||| ||
Sbjct: 1400 ccccaacgagctcaccggcgcgatcatgggcggccccgacggcggcgacaacttctccga 1459
Query: 828 caagcgcggcaactcctcctacaccgagccctgcacctacatcaactccctcgccatcgg 887
|||||| |||||||| |||| ||||||||| ||||| ||||||||||||||| |||| ||
Sbjct: 1460 caagcgtggcaactcgtcctgcaccgagccttgcacgtacatcaactccctctccattgg 1519
Query: 888 cccgctcgccgcgctcgccgtccg 911
||| |||||||| |||||| ||||
Sbjct: 1520 ccccctcgccgccctcgccatccg 1543
>ref|XM_507008.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ1293_A01.6 mRNA
Length = 1737
Score = 478 bits (241), Expect = e-132
Identities = 370/413 (89%)
Strand = Plus / Plus
Query: 79 aacaaggcgaagctgctgttcacgttcgccaagagccacctgggcagctacgacggcgag 138
|||||||| |||||||||||| ||||||||||| |||| ||| | |||||||||||||
Sbjct: 728 aacaaggccaagctgctgttccagttcgccaagacgcaccagggaacctacgacggcgag 787
Query: 139 tgccccttctactgctcctactcgggctacaacgacgagctgctgtgggccgcgacctgg 198
||||||||||||||||||||||| ||||||||||| ||| |||||||||| ||||| |||
Sbjct: 788 tgccccttctactgctcctactccggctacaacgatgagttgctgtgggcggcgacgtgg 847
Query: 199 ctgtacctggcgacgaggcggcaggtgtacgcggacttcatcgcccacgaggccatctcg 258
|||||||||||||||| | |||||||||||||||||||||||| |||||||| ||||||
Sbjct: 848 ctgtacctggcgacgaagaggcaggtgtacgcggacttcatcgggcacgaggcgatctcg 907
Query: 259 tcgagcgtggccgagttcagctgggacctcaagttccccggcgcgcaggtgctgctggcc 318
|||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||
Sbjct: 908 tcgagcgtggccgagttcagctgggacctcaagttcccgggcgcgcaggtgctcctcgcg 967
Query: 319 gagttcaacatgacctcggcgggcggcgcgcagaacttcaagtcgcaggcggacaacttc 378
||| |||||||||| || |||||| |||| ||||||||| ||||| |||||||||
Sbjct: 968 gagctcaacatgacatccagcggcggcctccagagcttcaagtcccaggccgacaacttc 1027
Query: 379 gtgtgcgcggtgctgccggacacggcgttccaccaggtgttcatcaccccgggcggcgtg 438
|||||||| ||||| |||||||| ||||||||||||||| |||||||||||||||| ||
Sbjct: 1028 gtgtgcgccgtgctcccggacaccccgttccaccaggtgtccatcaccccgggcggcatg 1087
Query: 439 atccacctccgcgacggcgccaactcgcagtacgtgaccagcacggcgttcct 491
|||||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct: 1088 atccacctccgcgacggcgccaactcccagtacgtcaccagcacggccttcct 1140
Score = 206 bits (104), Expect = 2e-050
Identities = 269/324 (83%)
Strand = Plus / Plus
Query: 588 gcagcagatggactacctgctgggcgccaacccgaggcacagctcctacgtcgtgggctt 647
||||||||| |||||||| || |||||||||||| | | ||||||||||||| |||||
Sbjct: 1237 gcagcagatcgactacctcctcggcgccaacccgcgcggccgctcctacgtcgtcggctt 1296
Query: 648 cggcgccaacccgcccacgcagccgcaccaccgcggcgcatccacccccgtgctgccccc 707
||||| ||||||||||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct: 1297 cggcgtcaacccgcccacgcagccgcaccaccgcggcgcctccaccccggtgctcccccc 1356
Query: 708 cggcacggacgtcaactgcggcctcagcttcggggactggatggcgcccgacaagcccaa 767
||| | ||||||||||| | |||||| | || ||| | | |||||| ||||||
Sbjct: 1357 gggctaccaggtcaactgcgggatgagcttcagcgagtggttcacccccgaccggcccaa 1416
Query: 768 ccccaacgagctcaccggcgccatcgtcggcgggcccgacaagaacgacggcttcgtgga 827
||||||||||||||||||||| ||| | ||||| |||||| |||| |||| ||
Sbjct: 1417 ccccaacgagctcaccggcgcgatcatgggcggccccgacggcggcgacaacttctccga 1476
Query: 828 caagcgcggcaactcctcctacaccgagccctgcacctacatcaactccctcgccatcgg 887
|||||| |||||||| |||| ||||||||| ||||| ||||||||||||||| |||| ||
Sbjct: 1477 caagcgtggcaactcgtcctgcaccgagccttgcacgtacatcaactccctctccattgg 1536
Query: 888 cccgctcgccgcgctcgccgtccg 911
||| |||||||| |||||| ||||
Sbjct: 1537 ccccctcgccgccctcgccatccg 1560
>ref|XM_507537.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1293_A01.6 mRNA
Length = 2276
Score = 478 bits (241), Expect = e-132
Identities = 370/413 (89%)
Strand = Plus / Plus
Query: 79 aacaaggcgaagctgctgttcacgttcgccaagagccacctgggcagctacgacggcgag 138
|||||||| |||||||||||| ||||||||||| |||| ||| | |||||||||||||
Sbjct: 722 aacaaggccaagctgctgttccagttcgccaagacgcaccagggaacctacgacggcgag 781
Query: 139 tgccccttctactgctcctactcgggctacaacgacgagctgctgtgggccgcgacctgg 198
||||||||||||||||||||||| ||||||||||| ||| |||||||||| ||||| |||
Sbjct: 782 tgccccttctactgctcctactccggctacaacgatgagttgctgtgggcggcgacgtgg 841
Query: 199 ctgtacctggcgacgaggcggcaggtgtacgcggacttcatcgcccacgaggccatctcg 258
|||||||||||||||| | |||||||||||||||||||||||| |||||||| ||||||
Sbjct: 842 ctgtacctggcgacgaagaggcaggtgtacgcggacttcatcgggcacgaggcgatctcg 901
Query: 259 tcgagcgtggccgagttcagctgggacctcaagttccccggcgcgcaggtgctgctggcc 318
|||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||
Sbjct: 902 tcgagcgtggccgagttcagctgggacctcaagttcccgggcgcgcaggtgctcctcgcg 961
Query: 319 gagttcaacatgacctcggcgggcggcgcgcagaacttcaagtcgcaggcggacaacttc 378
||| |||||||||| || |||||| |||| ||||||||| ||||| |||||||||
Sbjct: 962 gagctcaacatgacatccagcggcggcctccagagcttcaagtcccaggccgacaacttc 1021
Query: 379 gtgtgcgcggtgctgccggacacggcgttccaccaggtgttcatcaccccgggcggcgtg 438
|||||||| ||||| |||||||| ||||||||||||||| |||||||||||||||| ||
Sbjct: 1022 gtgtgcgccgtgctcccggacaccccgttccaccaggtgtccatcaccccgggcggcatg 1081
Query: 439 atccacctccgcgacggcgccaactcgcagtacgtgaccagcacggcgttcct 491
|||||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct: 1082 atccacctccgcgacggcgccaactcccagtacgtcaccagcacggccttcct 1134
Score = 206 bits (104), Expect = 2e-050
Identities = 269/324 (83%)
Strand = Plus / Plus
Query: 588 gcagcagatggactacctgctgggcgccaacccgaggcacagctcctacgtcgtgggctt 647
||||||||| |||||||| || |||||||||||| | | ||||||||||||| |||||
Sbjct: 1231 gcagcagatcgactacctcctcggcgccaacccgcgcggccgctcctacgtcgtcggctt 1290
Query: 648 cggcgccaacccgcccacgcagccgcaccaccgcggcgcatccacccccgtgctgccccc 707
||||| ||||||||||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct: 1291 cggcgtcaacccgcccacgcagccgcaccaccgcggcgcctccaccccggtgctcccccc 1350
Query: 708 cggcacggacgtcaactgcggcctcagcttcggggactggatggcgcccgacaagcccaa 767
||| | ||||||||||| | |||||| | || ||| | | |||||| ||||||
Sbjct: 1351 gggctaccaggtcaactgcgggatgagcttcagcgagtggttcacccccgaccggcccaa 1410
Query: 768 ccccaacgagctcaccggcgccatcgtcggcgggcccgacaagaacgacggcttcgtgga 827
||||||||||||||||||||| ||| | ||||| |||||| |||| |||| ||
Sbjct: 1411 ccccaacgagctcaccggcgcgatcatgggcggccccgacggcggcgacaacttctccga 1470
Query: 828 caagcgcggcaactcctcctacaccgagccctgcacctacatcaactccctcgccatcgg 887
|||||| |||||||| |||| ||||||||| ||||| ||||||||||||||| |||| ||
Sbjct: 1471 caagcgtggcaactcgtcctgcaccgagccttgcacgtacatcaactccctctccattgg 1530
Query: 888 cccgctcgccgcgctcgccgtccg 911
||| |||||||| |||||| ||||
Sbjct: 1531 ccccctcgccgccctcgccatccg 1554
>gb|AACV01005523.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005523, whole
genome shotgun sequence
Length = 45353
Score = 367 bits (185), Expect = 9e-099
Identities = 281/313 (89%)
Strand = Plus / Minus
Query: 179 tgctgtgggccgcgacctggctgtacctggcgacgaggcggcaggtgtacgcggacttca 238
|||||||||| ||||| ||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 43930 tgctgtgggcggcgacgtggctgtacctggcgacgaagaggcaggtgtacgcggacttca 43871
Query: 239 tcgcccacgaggccatctcgtcgagcgtggccgagttcagctgggacctcaagttccccg 298
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 43870 tcgggcacgaggcgatctcgtcgagcgtggccgagttcagctgggacctcaagttcccgg 43811
Query: 299 gcgcgcaggtgctgctggccgagttcaacatgacctcggcgggcggcgcgcagaacttca 358
||||||||||||| || || ||| |||||||||| || |||||| |||| |||||
Sbjct: 43810 gcgcgcaggtgctcctcgcggagctcaacatgacatccagcggcggcctccagagcttca 43751
Query: 359 agtcgcaggcggacaacttcgtgtgcgcggtgctgccggacacggcgttccaccaggtgt 418
|||| ||||| ||||||||||||||||| ||||| |||||||| |||||||||||||||
Sbjct: 43750 agtcccaggccgacaacttcgtgtgcgccgtgctcccggacaccccgttccaccaggtgt 43691
Query: 419 tcatcaccccgggcggcgtgatccacctccgcgacggcgccaactcgcagtacgtgacca 478
|||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 43690 ccatcaccccgggcggcatgatccacctccgcgacggcgccaactcccagtacgtcacca 43631
Query: 479 gcacggcgttcct 491
||||||| |||||
Sbjct: 43630 gcacggccttcct 43618
Score = 206 bits (104), Expect = 2e-050
Identities = 269/324 (83%)
Strand = Plus / Minus
Query: 588 gcagcagatggactacctgctgggcgccaacccgaggcacagctcctacgtcgtgggctt 647
||||||||| |||||||| || |||||||||||| | | ||||||||||||| |||||
Sbjct: 43521 gcagcagatcgactacctcctcggcgccaacccgcgcggccgctcctacgtcgtcggctt 43462
Query: 648 cggcgccaacccgcccacgcagccgcaccaccgcggcgcatccacccccgtgctgccccc 707
||||| ||||||||||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct: 43461 cggcgtcaacccgcccacgcagccgcaccaccgcggcgcctccaccccggtgctcccccc 43402
Query: 708 cggcacggacgtcaactgcggcctcagcttcggggactggatggcgcccgacaagcccaa 767
||| | ||||||||||| | |||||| | || ||| | | |||||| ||||||
Sbjct: 43401 gggctaccaggtcaactgcgggatgagcttcagcgagtggttcacccccgaccggcccaa 43342
Query: 768 ccccaacgagctcaccggcgccatcgtcggcgggcccgacaagaacgacggcttcgtgga 827
||||||||||||||||||||| ||| | ||||| |||||| |||| |||| ||
Sbjct: 43341 ccccaacgagctcaccggcgcgatcatgggcggccccgacggcggcgacaacttctccga 43282
Query: 828 caagcgcggcaactcctcctacaccgagccctgcacctacatcaactccctcgccatcgg 887
|||||| |||||||| |||| ||||||||| ||||| ||||||||||||||| |||| ||
Sbjct: 43281 caagcgtggcaactcgtcctgcaccgagccttgcacgtacatcaactccctctccattgg 43222
Query: 888 cccgctcgccgcgctcgccgtccg 911
||| |||||||| |||||| ||||
Sbjct: 43221 ccccctcgccgccctcgccatccg 43198
Score = 95.6 bits (48), Expect = 5e-017
Identities = 72/80 (90%)
Strand = Plus / Minus
Query: 93 gctgttcacgttcgccaagagccacctgggcagctacgacggcgagtgccccttctactg 152
||||||| ||||||||||| |||| ||| | |||||||||||||||||||||||||||
Sbjct: 44106 gctgttccagttcgccaagacgcaccagggaacctacgacggcgagtgccccttctactg 44047
Query: 153 ctcctactcgggctacaacg 172
||||||||| ||||||||||
Sbjct: 44046 ctcctactccggctacaacg 44027
>ref|NT_107181.1| Oryza sativa (japonica cultivar-group)
Length = 9248309
Score = 367 bits (185), Expect = 9e-099
Identities = 281/313 (89%)
Strand = Plus / Plus
Query: 179 tgctgtgggccgcgacctggctgtacctggcgacgaggcggcaggtgtacgcggacttca 238
|||||||||| ||||| ||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 8146557 tgctgtgggcggcgacgtggctgtacctggcgacgaagaggcaggtgtacgcggacttca 8146616
Query: 239 tcgcccacgaggccatctcgtcgagcgtggccgagttcagctgggacctcaagttccccg 298
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 8146617 tcgggcacgaggcgatctcgtcgagcgtggccgagttcagctgggacctcaagttcccgg 8146676
Query: 299 gcgcgcaggtgctgctggccgagttcaacatgacctcggcgggcggcgcgcagaacttca 358
||||||||||||| || || ||| |||||||||| || |||||| |||| |||||
Sbjct: 8146677 gcgcgcaggtgctcctcgcggagctcaacatgacatccagcggcggcctccagagcttca 8146736
Query: 359 agtcgcaggcggacaacttcgtgtgcgcggtgctgccggacacggcgttccaccaggtgt 418
|||| ||||| ||||||||||||||||| ||||| |||||||| |||||||||||||||
Sbjct: 8146737 agtcccaggccgacaacttcgtgtgcgccgtgctcccggacaccccgttccaccaggtgt 8146796
Query: 419 tcatcaccccgggcggcgtgatccacctccgcgacggcgccaactcgcagtacgtgacca 478
|||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 8146797 ccatcaccccgggcggcatgatccacctccgcgacggcgccaactcccagtacgtcacca 8146856
Query: 479 gcacggcgttcct 491
||||||| |||||
Sbjct: 8146857 gcacggccttcct 8146869
Score = 206 bits (104), Expect = 2e-050
Identities = 269/324 (83%)
Strand = Plus / Plus
Query: 588 gcagcagatggactacctgctgggcgccaacccgaggcacagctcctacgtcgtgggctt 647
||||||||| |||||||| || |||||||||||| | | ||||||||||||| |||||
Sbjct: 8146966 gcagcagatcgactacctcctcggcgccaacccgcgcggccgctcctacgtcgtcggctt 8147025
Query: 648 cggcgccaacccgcccacgcagccgcaccaccgcggcgcatccacccccgtgctgccccc 707
||||| ||||||||||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct: 8147026 cggcgtcaacccgcccacgcagccgcaccaccgcggcgcctccaccccggtgctcccccc 8147085
Query: 708 cggcacggacgtcaactgcggcctcagcttcggggactggatggcgcccgacaagcccaa 767
||| | ||||||||||| | |||||| | || ||| | | |||||| ||||||
Sbjct: 8147086 gggctaccaggtcaactgcgggatgagcttcagcgagtggttcacccccgaccggcccaa 8147145
Query: 768 ccccaacgagctcaccggcgccatcgtcggcgggcccgacaagaacgacggcttcgtgga 827
||||||||||||||||||||| ||| | ||||| |||||| |||| |||| ||
Sbjct: 8147146 ccccaacgagctcaccggcgcgatcatgggcggccccgacggcggcgacaacttctccga 8147205
Query: 828 caagcgcggcaactcctcctacaccgagccctgcacctacatcaactccctcgccatcgg 887
|||||| |||||||| |||| ||||||||| ||||| ||||||||||||||| |||| ||
Sbjct: 8147206 caagcgtggcaactcgtcctgcaccgagccttgcacgtacatcaactccctctccattgg 8147265
Query: 888 cccgctcgccgcgctcgccgtccg 911
||| |||||||| |||||| ||||
Sbjct: 8147266 ccccctcgccgccctcgccatccg 8147289
Score = 95.6 bits (48), Expect = 5e-017
Identities = 72/80 (90%)
Strand = Plus / Plus
Query: 93 gctgttcacgttcgccaagagccacctgggcagctacgacggcgagtgccccttctactg 152
||||||| ||||||||||| |||| ||| | |||||||||||||||||||||||||||
Sbjct: 8146381 gctgttccagttcgccaagacgcaccagggaacctacgacggcgagtgccccttctactg 8146440
Query: 153 ctcctactcgggctacaacg 172
||||||||| ||||||||||
Sbjct: 8146441 ctcctactccggctacaacg 8146460
Score = 44.1 bits (22), Expect = 0.17
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 591 gcagatggactacctgctgggcgccaacccgagg 624
|||| |||||||| |||||||| |||||||||||
Sbjct: 6025493 gcaggtggactacgtgctgggcaccaacccgagg 6025526
Score = 44.1 bits (22), Expect = 0.17
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 465 gcagtacgtgaccagcacggcgttcctgctggtggtgtacgcggac 510
|||||||||||||| | |||||||||| || | || ||||||||||
Sbjct: 6025361 gcagtacgtgaccaacgcggcgttcctcctcgcggcgtacgcggac 6025406
>dbj|AP004846.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1293_A01
Length = 139121
Score = 367 bits (185), Expect = 9e-099
Identities = 281/313 (89%)
Strand = Plus / Plus
Query: 179 tgctgtgggccgcgacctggctgtacctggcgacgaggcggcaggtgtacgcggacttca 238
|||||||||| ||||| ||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 27498 tgctgtgggcggcgacgtggctgtacctggcgacgaagaggcaggtgtacgcggacttca 27557
Query: 239 tcgcccacgaggccatctcgtcgagcgtggccgagttcagctgggacctcaagttccccg 298
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 27558 tcgggcacgaggcgatctcgtcgagcgtggccgagttcagctgggacctcaagttcccgg 27617
Query: 299 gcgcgcaggtgctgctggccgagttcaacatgacctcggcgggcggcgcgcagaacttca 358
||||||||||||| || || ||| |||||||||| || |||||| |||| |||||
Sbjct: 27618 gcgcgcaggtgctcctcgcggagctcaacatgacatccagcggcggcctccagagcttca 27677
Query: 359 agtcgcaggcggacaacttcgtgtgcgcggtgctgccggacacggcgttccaccaggtgt 418
|||| ||||| ||||||||||||||||| ||||| |||||||| |||||||||||||||
Sbjct: 27678 agtcccaggccgacaacttcgtgtgcgccgtgctcccggacaccccgttccaccaggtgt 27737
Query: 419 tcatcaccccgggcggcgtgatccacctccgcgacggcgccaactcgcagtacgtgacca 478
|||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 27738 ccatcaccccgggcggcatgatccacctccgcgacggcgccaactcccagtacgtcacca 27797
Query: 479 gcacggcgttcct 491
||||||| |||||
Sbjct: 27798 gcacggccttcct 27810
Score = 206 bits (104), Expect = 2e-050
Identities = 269/324 (83%)
Strand = Plus / Plus
Query: 588 gcagcagatggactacctgctgggcgccaacccgaggcacagctcctacgtcgtgggctt 647
||||||||| |||||||| || |||||||||||| | | ||||||||||||| |||||
Sbjct: 27907 gcagcagatcgactacctcctcggcgccaacccgcgcggccgctcctacgtcgtcggctt 27966
Query: 648 cggcgccaacccgcccacgcagccgcaccaccgcggcgcatccacccccgtgctgccccc 707
||||| ||||||||||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct: 27967 cggcgtcaacccgcccacgcagccgcaccaccgcggcgcctccaccccggtgctcccccc 28026
Query: 708 cggcacggacgtcaactgcggcctcagcttcggggactggatggcgcccgacaagcccaa 767
||| | ||||||||||| | |||||| | || ||| | | |||||| ||||||
Sbjct: 28027 gggctaccaggtcaactgcgggatgagcttcagcgagtggttcacccccgaccggcccaa 28086
Query: 768 ccccaacgagctcaccggcgccatcgtcggcgggcccgacaagaacgacggcttcgtgga 827
||||||||||||||||||||| ||| | ||||| |||||| |||| |||| ||
Sbjct: 28087 ccccaacgagctcaccggcgcgatcatgggcggccccgacggcggcgacaacttctccga 28146
Query: 828 caagcgcggcaactcctcctacaccgagccctgcacctacatcaactccctcgccatcgg 887
|||||| |||||||| |||| ||||||||| ||||| ||||||||||||||| |||| ||
Sbjct: 28147 caagcgtggcaactcgtcctgcaccgagccttgcacgtacatcaactccctctccattgg 28206
Query: 888 cccgctcgccgcgctcgccgtccg 911
||| |||||||| |||||| ||||
Sbjct: 28207 ccccctcgccgccctcgccatccg 28230
Score = 95.6 bits (48), Expect = 5e-017
Identities = 72/80 (90%)
Strand = Plus / Plus
Query: 93 gctgttcacgttcgccaagagccacctgggcagctacgacggcgagtgccccttctactg 152
||||||| ||||||||||| |||| ||| | |||||||||||||||||||||||||||
Sbjct: 27322 gctgttccagttcgccaagacgcaccagggaacctacgacggcgagtgccccttctactg 27381
Query: 153 ctcctactcgggctacaacg 172
||||||||| ||||||||||
Sbjct: 27382 ctcctactccggctacaacg 27401
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 367 bits (185), Expect = 9e-099
Identities = 281/313 (89%)
Strand = Plus / Plus
Query: 179 tgctgtgggccgcgacctggctgtacctggcgacgaggcggcaggtgtacgcggacttca 238
|||||||||| ||||| ||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 19621188 tgctgtgggcggcgacgtggctgtacctggcgacgaagaggcaggtgtacgcggacttca 19621247
Query: 239 tcgcccacgaggccatctcgtcgagcgtggccgagttcagctgggacctcaagttccccg 298
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 19621248 tcgggcacgaggcgatctcgtcgagcgtggccgagttcagctgggacctcaagttcccgg 19621307
Query: 299 gcgcgcaggtgctgctggccgagttcaacatgacctcggcgggcggcgcgcagaacttca 358
||||||||||||| || || ||| |||||||||| || |||||| |||| |||||
Sbjct: 19621308 gcgcgcaggtgctcctcgcggagctcaacatgacatccagcggcggcctccagagcttca 19621367
Query: 359 agtcgcaggcggacaacttcgtgtgcgcggtgctgccggacacggcgttccaccaggtgt 418
|||| ||||| ||||||||||||||||| ||||| |||||||| |||||||||||||||
Sbjct: 19621368 agtcccaggccgacaacttcgtgtgcgccgtgctcccggacaccccgttccaccaggtgt 19621427
Query: 419 tcatcaccccgggcggcgtgatccacctccgcgacggcgccaactcgcagtacgtgacca 478
|||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 19621428 ccatcaccccgggcggcatgatccacctccgcgacggcgccaactcccagtacgtcacca 19621487
Query: 479 gcacggcgttcct 491
||||||| |||||
Sbjct: 19621488 gcacggccttcct 19621500
Score = 206 bits (104), Expect = 2e-050
Identities = 269/324 (83%)
Strand = Plus / Plus
Query: 588 gcagcagatggactacctgctgggcgccaacccgaggcacagctcctacgtcgtgggctt 647
||||||||| |||||||| || |||||||||||| | | ||||||||||||| |||||
Sbjct: 19621597 gcagcagatcgactacctcctcggcgccaacccgcgcggccgctcctacgtcgtcggctt 19621656
Query: 648 cggcgccaacccgcccacgcagccgcaccaccgcggcgcatccacccccgtgctgccccc 707
||||| ||||||||||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct: 19621657 cggcgtcaacccgcccacgcagccgcaccaccgcggcgcctccaccccggtgctcccccc 19621716
Query: 708 cggcacggacgtcaactgcggcctcagcttcggggactggatggcgcccgacaagcccaa 767
||| | ||||||||||| | |||||| | || ||| | | |||||| ||||||
Sbjct: 19621717 gggctaccaggtcaactgcgggatgagcttcagcgagtggttcacccccgaccggcccaa 19621776
Query: 768 ccccaacgagctcaccggcgccatcgtcggcgggcccgacaagaacgacggcttcgtgga 827
||||||||||||||||||||| ||| | ||||| |||||| |||| |||| ||
Sbjct: 19621777 ccccaacgagctcaccggcgcgatcatgggcggccccgacggcggcgacaacttctccga 19621836
Query: 828 caagcgcggcaactcctcctacaccgagccctgcacctacatcaactccctcgccatcgg 887
|||||| |||||||| |||| ||||||||| ||||| ||||||||||||||| |||| ||
Sbjct: 19621837 caagcgtggcaactcgtcctgcaccgagccttgcacgtacatcaactccctctccattgg 19621896
Query: 888 cccgctcgccgcgctcgccgtccg 911
||| |||||||| |||||| ||||
Sbjct: 19621897 ccccctcgccgccctcgccatccg 19621920
Score = 95.6 bits (48), Expect = 5e-017
Identities = 72/80 (90%)
Strand = Plus / Plus
Query: 93 gctgttcacgttcgccaagagccacctgggcagctacgacggcgagtgccccttctactg 152
||||||| ||||||||||| |||| ||| | |||||||||||||||||||||||||||
Sbjct: 19621012 gctgttccagttcgccaagacgcaccagggaacctacgacggcgagtgccccttctactg 19621071
Query: 153 ctcctactcgggctacaacg 172
||||||||| ||||||||||
Sbjct: 19621072 ctcctactccggctacaacg 19621091
Score = 44.1 bits (22), Expect = 0.17
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 591 gcagatggactacctgctgggcgccaacccgagg 624
|||| |||||||| |||||||| |||||||||||
Sbjct: 17354763 gcaggtggactacgtgctgggcaccaacccgagg 17354796
Score = 44.1 bits (22), Expect = 0.17
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 465 gcagtacgtgaccagcacggcgttcctgctggtggtgtacgcggac 510
|||||||||||||| | |||||||||| || | || ||||||||||
Sbjct: 17354631 gcagtacgtgaccaacgcggcgttcctcctcgcggcgtacgcggac 17354676
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 367 bits (185), Expect = 9e-099
Identities = 281/313 (89%)
Strand = Plus / Plus
Query: 179 tgctgtgggccgcgacctggctgtacctggcgacgaggcggcaggtgtacgcggacttca 238
|||||||||| ||||| ||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 33074252 tgctgtgggcggcgacgtggctgtacctggcgacgaagaggcaggtgtacgcggacttca 33074311
Query: 239 tcgcccacgaggccatctcgtcgagcgtggccgagttcagctgggacctcaagttccccg 298
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 33074312 tcgggcacgaggcgatctcgtcgagcgtggccgagttcagctgggacctcaagttcccgg 33074371
Query: 299 gcgcgcaggtgctgctggccgagttcaacatgacctcggcgggcggcgcgcagaacttca 358
||||||||||||| || || ||| |||||||||| || |||||| |||| |||||
Sbjct: 33074372 gcgcgcaggtgctcctcgcggagctcaacatgacatccagcggcggcctccagagcttca 33074431
Query: 359 agtcgcaggcggacaacttcgtgtgcgcggtgctgccggacacggcgttccaccaggtgt 418
|||| ||||| ||||||||||||||||| ||||| |||||||| |||||||||||||||
Sbjct: 33074432 agtcccaggccgacaacttcgtgtgcgccgtgctcccggacaccccgttccaccaggtgt 33074491
Query: 419 tcatcaccccgggcggcgtgatccacctccgcgacggcgccaactcgcagtacgtgacca 478
|||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 33074492 ccatcaccccgggcggcatgatccacctccgcgacggcgccaactcccagtacgtcacca 33074551
Query: 479 gcacggcgttcct 491
||||||| |||||
Sbjct: 33074552 gcacggccttcct 33074564
Score = 206 bits (104), Expect = 2e-050
Identities = 269/324 (83%)
Strand = Plus / Plus
Query: 588 gcagcagatggactacctgctgggcgccaacccgaggcacagctcctacgtcgtgggctt 647
||||||||| |||||||| || |||||||||||| | | ||||||||||||| |||||
Sbjct: 33074661 gcagcagatcgactacctcctcggcgccaacccgcgcggccgctcctacgtcgtcggctt 33074720
Query: 648 cggcgccaacccgcccacgcagccgcaccaccgcggcgcatccacccccgtgctgccccc 707
||||| ||||||||||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct: 33074721 cggcgtcaacccgcccacgcagccgcaccaccgcggcgcctccaccccggtgctcccccc 33074780
Query: 708 cggcacggacgtcaactgcggcctcagcttcggggactggatggcgcccgacaagcccaa 767
||| | ||||||||||| | |||||| | || ||| | | |||||| ||||||
Sbjct: 33074781 gggctaccaggtcaactgcgggatgagcttcagcgagtggttcacccccgaccggcccaa 33074840
Query: 768 ccccaacgagctcaccggcgccatcgtcggcgggcccgacaagaacgacggcttcgtgga 827
||||||||||||||||||||| ||| | ||||| |||||| |||| |||| ||
Sbjct: 33074841 ccccaacgagctcaccggcgcgatcatgggcggccccgacggcggcgacaacttctccga 33074900
Query: 828 caagcgcggcaactcctcctacaccgagccctgcacctacatcaactccctcgccatcgg 887
|||||| |||||||| |||| ||||||||| ||||| ||||||||||||||| |||| ||
Sbjct: 33074901 caagcgtggcaactcgtcctgcaccgagccttgcacgtacatcaactccctctccattgg 33074960
Query: 888 cccgctcgccgcgctcgccgtccg 911
||| |||||||| |||||| ||||
Sbjct: 33074961 ccccctcgccgccctcgccatccg 33074984
Score = 95.6 bits (48), Expect = 5e-017
Identities = 72/80 (90%)
Strand = Plus / Plus
Query: 93 gctgttcacgttcgccaagagccacctgggcagctacgacggcgagtgccccttctactg 152
||||||| ||||||||||| |||| ||| | |||||||||||||||||||||||||||
Sbjct: 33074076 gctgttccagttcgccaagacgcaccagggaacctacgacggcgagtgccccttctactg 33074135
Query: 153 ctcctactcgggctacaacg 172
||||||||| ||||||||||
Sbjct: 33074136 ctcctactccggctacaacg 33074155
Score = 44.1 bits (22), Expect = 0.17
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 591 gcagatggactacctgctgggcgccaacccgagg 624
|||| |||||||| |||||||| |||||||||||
Sbjct: 30807827 gcaggtggactacgtgctgggcaccaacccgagg 30807860
Score = 44.1 bits (22), Expect = 0.17
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 465 gcagtacgtgaccagcacggcgttcctgctggtggtgtacgcggac 510
|||||||||||||| | |||||||||| || | || ||||||||||
Sbjct: 30807695 gcagtacgtgaccaacgcggcgttcctcctcgcggcgtacgcggac 30807740
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 367 bits (185), Expect = 9e-099
Identities = 281/313 (89%)
Strand = Plus / Plus
Query: 179 tgctgtgggccgcgacctggctgtacctggcgacgaggcggcaggtgtacgcggacttca 238
|||||||||| ||||| ||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 32981558 tgctgtgggcggcgacgtggctgtacctggcgacgaagaggcaggtgtacgcggacttca 32981617
Query: 239 tcgcccacgaggccatctcgtcgagcgtggccgagttcagctgggacctcaagttccccg 298
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 32981618 tcgggcacgaggcgatctcgtcgagcgtggccgagttcagctgggacctcaagttcccgg 32981677
Query: 299 gcgcgcaggtgctgctggccgagttcaacatgacctcggcgggcggcgcgcagaacttca 358
||||||||||||| || || ||| |||||||||| || |||||| |||| |||||
Sbjct: 32981678 gcgcgcaggtgctcctcgcggagctcaacatgacatccagcggcggcctccagagcttca 32981737
Query: 359 agtcgcaggcggacaacttcgtgtgcgcggtgctgccggacacggcgttccaccaggtgt 418
|||| ||||| ||||||||||||||||| ||||| |||||||| |||||||||||||||
Sbjct: 32981738 agtcccaggccgacaacttcgtgtgcgccgtgctcccggacaccccgttccaccaggtgt 32981797
Query: 419 tcatcaccccgggcggcgtgatccacctccgcgacggcgccaactcgcagtacgtgacca 478
|||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 32981798 ccatcaccccgggcggcatgatccacctccgcgacggcgccaactcccagtacgtcacca 32981857
Query: 479 gcacggcgttcct 491
||||||| |||||
Sbjct: 32981858 gcacggccttcct 32981870
Score = 206 bits (104), Expect = 2e-050
Identities = 269/324 (83%)
Strand = Plus / Plus
Query: 588 gcagcagatggactacctgctgggcgccaacccgaggcacagctcctacgtcgtgggctt 647
||||||||| |||||||| || |||||||||||| | | ||||||||||||| |||||
Sbjct: 32981967 gcagcagatcgactacctcctcggcgccaacccgcgcggccgctcctacgtcgtcggctt 32982026
Query: 648 cggcgccaacccgcccacgcagccgcaccaccgcggcgcatccacccccgtgctgccccc 707
||||| ||||||||||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct: 32982027 cggcgtcaacccgcccacgcagccgcaccaccgcggcgcctccaccccggtgctcccccc 32982086
Query: 708 cggcacggacgtcaactgcggcctcagcttcggggactggatggcgcccgacaagcccaa 767
||| | ||||||||||| | |||||| | || ||| | | |||||| ||||||
Sbjct: 32982087 gggctaccaggtcaactgcgggatgagcttcagcgagtggttcacccccgaccggcccaa 32982146
Query: 768 ccccaacgagctcaccggcgccatcgtcggcgggcccgacaagaacgacggcttcgtgga 827
||||||||||||||||||||| ||| | ||||| |||||| |||| |||| ||
Sbjct: 32982147 ccccaacgagctcaccggcgcgatcatgggcggccccgacggcggcgacaacttctccga 32982206
Query: 828 caagcgcggcaactcctcctacaccgagccctgcacctacatcaactccctcgccatcgg 887
|||||| |||||||| |||| ||||||||| ||||| ||||||||||||||| |||| ||
Sbjct: 32982207 caagcgtggcaactcgtcctgcaccgagccttgcacgtacatcaactccctctccattgg 32982266
Query: 888 cccgctcgccgcgctcgccgtccg 911
||| |||||||| |||||| ||||
Sbjct: 32982267 ccccctcgccgccctcgccatccg 32982290
Score = 95.6 bits (48), Expect = 5e-017
Identities = 72/80 (90%)
Strand = Plus / Plus
Query: 93 gctgttcacgttcgccaagagccacctgggcagctacgacggcgagtgccccttctactg 152
||||||| ||||||||||| |||| ||| | |||||||||||||||||||||||||||
Sbjct: 32981382 gctgttccagttcgccaagacgcaccagggaacctacgacggcgagtgccccttctactg 32981441
Query: 153 ctcctactcgggctacaacg 172
||||||||| ||||||||||
Sbjct: 32981442 ctcctactccggctacaacg 32981461
Score = 44.1 bits (22), Expect = 0.17
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 591 gcagatggactacctgctgggcgccaacccgagg 624
|||| |||||||| |||||||| |||||||||||
Sbjct: 30860494 gcaggtggactacgtgctgggcaccaacccgagg 30860527
Score = 44.1 bits (22), Expect = 0.17
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 465 gcagtacgtgaccagcacggcgttcctgctggtggtgtacgcggac 510
|||||||||||||| | |||||||||| || | || ||||||||||
Sbjct: 30860362 gcagtacgtgaccaacgcggcgttcctcctcgcggcgtacgcggac 30860407
>gb|AU183606.1|AU183606 AU183606 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E1732, mRNA sequence
Length = 221
Score = 123 bits (62), Expect = 2e-025
Identities = 81/88 (92%)
Strand = Plus / Plus
Query: 404 cgttccaccaggtgttcatcaccccgggcggcgtgatccacctccgcgacggcgccaact 463
||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 4 cgttccaccnggtgtccatcaccccgggcggnatgatccacctccgcgacggcgccaact 63
Query: 464 cgcagtacgtgaccagcacggcgttcct 491
| |||||||| ||||||||||| |||||
Sbjct: 64 cccagtacgtcaccagcacggccttcct 91
Score = 44.1 bits (22), Expect = 0.17
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 588 gcagcagatggactacctgctgggcgccaacccg 621
||||||||| |||||||| || ||||||||||||
Sbjct: 187 gcagcagatcgactacctcctcggcgccaacccg 220
>dbj|AK106851.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-118-A12, full
insert sequence
Length = 1782
Score = 75.8 bits (38), Expect = 5e-011
Identities = 47/50 (94%)
Strand = Plus / Plus
Query: 138 gtgccccttctactgctcctactcgggctacaacgacgagctgctgtggg 187
|||||| |||||||||||||||||||||||| |||||||||| |||||||
Sbjct: 829 gtgcccgttctactgctcctactcgggctaccacgacgagctcctgtggg 878
Score = 50.1 bits (25), Expect = 0.003
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 16 gccgcgttcgccgcctcgtccatggtgttccgc 48
|||||| ||||||| ||||||||||||||||||
Sbjct: 689 gccgcgctcgccgcgtcgtccatggtgttccgc 721
Score = 48.1 bits (24), Expect = 0.011
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 761 agcccaaccccaacgagctcaccggcgccatcgtcggcgggcccgaca 808
|||||||||| |||| |||| ||||||| ||||||||||||| ||||
Sbjct: 1485 agcccaacccgaacgtgctcgtcggcgccgtcgtcggcgggccggaca 1532
>dbj|AP005657.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0427G12
Length = 185545
Score = 75.8 bits (38), Expect = 5e-011
Identities = 47/50 (94%)
Strand = Plus / Plus
Query: 138 gtgccccttctactgctcctactcgggctacaacgacgagctgctgtggg 187
|||||| |||||||||||||||||||||||| |||||||||| |||||||
Sbjct: 57001 gtgcccgttctactgctcctactcgggctaccacgacgagctcctgtggg 57050
Score = 50.1 bits (25), Expect = 0.003
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 16 gccgcgttcgccgcctcgtccatggtgttccgc 48
|||||| ||||||| ||||||||||||||||||
Sbjct: 56861 gccgcgctcgccgcgtcgtccatggtgttccgc 56893
Score = 48.1 bits (24), Expect = 0.011
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 761 agcccaaccccaacgagctcaccggcgccatcgtcggcgggcccgaca 808
|||||||||| |||| |||| ||||||| ||||||||||||| ||||
Sbjct: 57657 agcccaacccgaacgtgctcgtcggcgccgtcgtcggcgggccggaca 57704
>gb|AACV01017130.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg017130, whole
genome shotgun sequence
Length = 21954
Score = 75.8 bits (38), Expect = 5e-011
Identities = 47/50 (94%)
Strand = Plus / Minus
Query: 138 gtgccccttctactgctcctactcgggctacaacgacgagctgctgtggg 187
|||||| |||||||||||||||||||||||| |||||||||| |||||||
Sbjct: 11921 gtgcccgttctactgctcctactcgggctaccacgacgagctcctgtggg 11872
Score = 50.1 bits (25), Expect = 0.003
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 16 gccgcgttcgccgcctcgtccatggtgttccgc 48
|||||| ||||||| ||||||||||||||||||
Sbjct: 12061 gccgcgctcgccgcgtcgtccatggtgttccgc 12029
Score = 48.1 bits (24), Expect = 0.011
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 761 agcccaaccccaacgagctcaccggcgccatcgtcggcgggcccgaca 808
|||||||||| |||| |||| ||||||| ||||||||||||| ||||
Sbjct: 11265 agcccaacccgaacgtgctcgtcggcgccgtcgtcggcgggccggaca 11218
>ref|XM_479767.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1782
Score = 75.8 bits (38), Expect = 5e-011
Identities = 47/50 (94%)
Strand = Plus / Plus
Query: 138 gtgccccttctactgctcctactcgggctacaacgacgagctgctgtggg 187
|||||| |||||||||||||||||||||||| |||||||||| |||||||
Sbjct: 829 gtgcccgttctactgctcctactcgggctaccacgacgagctcctgtggg 878
Score = 50.1 bits (25), Expect = 0.003
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 16 gccgcgttcgccgcctcgtccatggtgttccgc 48
|||||| ||||||| ||||||||||||||||||
Sbjct: 689 gccgcgctcgccgcgtcgtccatggtgttccgc 721
Score = 48.1 bits (24), Expect = 0.011
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 761 agcccaaccccaacgagctcaccggcgccatcgtcggcgggcccgaca 808
|||||||||| |||| |||| ||||||| ||||||||||||| ||||
Sbjct: 1485 agcccaacccgaacgtgctcgtcggcgccgtcgtcggcgggccggaca 1532
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 75.8 bits (38), Expect = 5e-011
Identities = 47/50 (94%)
Strand = Plus / Plus
Query: 138 gtgccccttctactgctcctactcgggctacaacgacgagctgctgtggg 187
|||||| |||||||||||||||||||||||| |||||||||| |||||||
Sbjct: 524207 gtgcccgttctactgctcctactcgggctaccacgacgagctcctgtggg 524256
Score = 50.1 bits (25), Expect = 0.003
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 16 gccgcgttcgccgcctcgtccatggtgttccgc 48
|||||| ||||||| ||||||||||||||||||
Sbjct: 524067 gccgcgctcgccgcgtcgtccatggtgttccgc 524099
Score = 48.1 bits (24), Expect = 0.011
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 761 agcccaaccccaacgagctcaccggcgccatcgtcggcgggcccgaca 808
|||||||||| |||| |||| ||||||| ||||||||||||| ||||
Sbjct: 524863 agcccaacccgaacgtgctcgtcggcgccgtcgtcggcgggccggaca 524910
Score = 46.1 bits (23), Expect = 0.044
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 139 tgccccttctactgctcctactc 161
|||||||||||||||||||||||
Sbjct: 18062638 tgccccttctactgctcctactc 18062660
>gb|CH401228.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000065
genomic scaffold, whole genome shotgun sequence
Length = 5026603
Score = 75.8 bits (38), Expect = 5e-011
Identities = 47/50 (94%)
Strand = Plus / Plus
Query: 138 gtgccccttctactgctcctactcgggctacaacgacgagctgctgtggg 187
|||||| |||||||||||||||||||||||| |||||||||| |||||||
Sbjct: 765222 gtgcccgttctactgctcctactcgggctaccacgacgagctcctgtggg 765271
Score = 50.1 bits (25), Expect = 0.003
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 16 gccgcgttcgccgcctcgtccatggtgttccgc 48
|||||| ||||||| ||||||||||||||||||
Sbjct: 765082 gccgcgctcgccgcgtcgtccatggtgttccgc 765114
Score = 48.1 bits (24), Expect = 0.011
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 761 agcccaaccccaacgagctcaccggcgccatcgtcggcgggcccgaca 808
|||||||||| |||| |||| ||||||| ||||||||||||| ||||
Sbjct: 765878 agcccaacccgaacgtgctcgtcggcgccgtcgtcggcgggccggaca 765925
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 75.8 bits (38), Expect = 5e-011
Identities = 47/50 (94%)
Strand = Plus / Plus
Query: 138 gtgccccttctactgctcctactcgggctacaacgacgagctgctgtggg 187
|||||| |||||||||||||||||||||||| |||||||||| |||||||
Sbjct: 765222 gtgcccgttctactgctcctactcgggctaccacgacgagctcctgtggg 765271
Score = 50.1 bits (25), Expect = 0.003
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 16 gccgcgttcgccgcctcgtccatggtgttccgc 48
|||||| ||||||| ||||||||||||||||||
Sbjct: 765082 gccgcgctcgccgcgtcgtccatggtgttccgc 765114
Score = 48.1 bits (24), Expect = 0.011
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 761 agcccaaccccaacgagctcaccggcgccatcgtcggcgggcccgaca 808
|||||||||| |||| |||| ||||||| ||||||||||||| ||||
Sbjct: 765878 agcccaacccgaacgtgctcgtcggcgccgtcgtcggcgggccggaca 765925
Score = 46.1 bits (23), Expect = 0.044
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 139 tgccccttctactgctcctactc 161
|||||||||||||||||||||||
Sbjct: 17102813 tgccccttctactgctcctactc 17102835
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8,
complete sequence
Length = 28434780
Score = 75.8 bits (38), Expect = 5e-011
Identities = 47/50 (94%)
Strand = Plus / Plus
Query: 138 gtgccccttctactgctcctactcgggctacaacgacgagctgctgtggg 187
|||||| |||||||||||||||||||||||| |||||||||| |||||||
Sbjct: 757781 gtgcccgttctactgctcctactcgggctaccacgacgagctcctgtggg 757830
Score = 50.1 bits (25), Expect = 0.003
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 16 gccgcgttcgccgcctcgtccatggtgttccgc 48
|||||| ||||||| ||||||||||||||||||
Sbjct: 757641 gccgcgctcgccgcgtcgtccatggtgttccgc 757673
Score = 48.1 bits (24), Expect = 0.011
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 761 agcccaaccccaacgagctcaccggcgccatcgtcggcgggcccgaca 808
|||||||||| |||| |||| ||||||| ||||||||||||| ||||
Sbjct: 758437 agcccaacccgaacgtgctcgtcggcgccgtcgtcggcgggccggaca 758484
Score = 46.1 bits (23), Expect = 0.044
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 139 tgccccttctactgctcctactc 161
|||||||||||||||||||||||
Sbjct: 18300725 tgccccttctactgctcctactc 18300747
>dbj|AK105580.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-128-E04, full
insert sequence
Length = 1605
Score = 65.9 bits (33), Expect = 5e-008
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 764 ccaaccccaacgagctcaccggcgccatcgtcggcgggccc 804
|||||||||||| |||| |||||||||||||||||||||||
Sbjct: 1099 ccaaccccaacgtgctcgccggcgccatcgtcggcgggccc 1139
>dbj|AP007149.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9,
fosmid clone:OSJNOa018M17
Length = 36758
Score = 65.9 bits (33), Expect = 5e-008
Identities = 39/41 (95%)
Strand = Plus / Minus
Query: 764 ccaaccccaacgagctcaccggcgccatcgtcggcgggccc 804
|||||||||||| |||| |||||||||||||||||||||||
Sbjct: 25584 ccaaccccaacgtgctcgccggcgccatcgtcggcgggccc 25544
>dbj|AP006453.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
clone:B1339H09
Length = 131136
Score = 65.9 bits (33), Expect = 5e-008
Identities = 39/41 (95%)
Strand = Plus / Minus
Query: 764 ccaaccccaacgagctcaccggcgccatcgtcggcgggccc 804
|||||||||||| |||| |||||||||||||||||||||||
Sbjct: 15014 ccaaccccaacgtgctcgccggcgccatcgtcggcgggccc 14974
>gb|AACV01019888.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg019888, whole
genome shotgun sequence
Length = 9472
Score = 65.9 bits (33), Expect = 5e-008
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 764 ccaaccccaacgagctcaccggcgccatcgtcggcgggccc 804
|||||||||||| |||| |||||||||||||||||||||||
Sbjct: 1041 ccaaccccaacgtgctcgccggcgccatcgtcggcgggccc 1081
>ref|XM_450899.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1599
Score = 65.9 bits (33), Expect = 5e-008
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 764 ccaaccccaacgagctcaccggcgccatcgtcggcgggccc 804
|||||||||||| |||| |||||||||||||||||||||||
Sbjct: 1370 ccaaccccaacgtgctcgccggcgccatcgtcggcgggccc 1410
>ref|NT_107083.1| Oryza sativa (japonica cultivar-group)
Length = 598321
Score = 65.9 bits (33), Expect = 5e-008
Identities = 39/41 (95%)
Strand = Plus / Minus
Query: 764 ccaaccccaacgagctcaccggcgccatcgtcggcgggccc 804
|||||||||||| |||| |||||||||||||||||||||||
Sbjct: 25584 ccaaccccaacgtgctcgccggcgccatcgtcggcgggccc 25544
>gb|CH401242.1| Oryza sativa (japonica cultivar-group) chromosome 9 scaffold000079 genomic
scaffold, whole genome shotgun sequence
Length = 12069826
Score = 65.9 bits (33), Expect = 5e-008
Identities = 39/41 (95%)
Strand = Plus / Minus
Query: 764 ccaaccccaacgagctcaccggcgccatcgtcggcgggccc 804
|||||||||||| |||| |||||||||||||||||||||||
Sbjct: 2969637 ccaaccccaacgtgctcgccggcgccatcgtcggcgggccc 2969597
>gb|CM000146.1| Oryza sativa (japonica cultivar-group) chromosome 9, whole genome shotgun
sequence
Length = 21543637
Score = 65.9 bits (33), Expect = 5e-008
Identities = 39/41 (95%)
Strand = Plus / Minus
Query: 764 ccaaccccaacgagctcaccggcgccatcgtcggcgggccc 804
|||||||||||| |||| |||||||||||||||||||||||
Sbjct: 12443448 ccaaccccaacgtgctcgccggcgccatcgtcggcgggccc 12443408
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
sequence
Length = 22696651
Score = 65.9 bits (33), Expect = 5e-008
Identities = 39/41 (95%)
Strand = Plus / Minus
Query: 764 ccaaccccaacgagctcaccggcgccatcgtcggcgggccc 804
|||||||||||| |||| |||||||||||||||||||||||
Sbjct: 13577598 ccaaccccaacgtgctcgccggcgccatcgtcggcgggccc 13577558
>dbj|AK063458.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-115-G09, full
insert sequence
Length = 2206
Score = 54.0 bits (27), Expect = 2e-004
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 783 cggcgccatcgtcggcgggcccgacaagaacgacggcttcgtggacaagcgcggcaact 841
||||||| ||||||||||||||||| || |||||| ||||| ||| |||||| |||||
Sbjct: 1460 cggcgccgtcgtcggcgggcccgacgagtacgacgacttcgccgacgagcgcgacaact 1518
>dbj|AK099370.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033048N02, full
insert sequence
Length = 2188
Score = 54.0 bits (27), Expect = 2e-004
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 783 cggcgccatcgtcggcgggcccgacaagaacgacggcttcgtggacaagcgcggcaact 841
||||||| ||||||||||||||||| || |||||| ||||| ||| |||||| |||||
Sbjct: 1461 cggcgccgtcgtcggcgggcccgacgagtacgacgacttcgccgacgagcgcgacaact 1519
>gb|AC135914.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
OSJNBa0074P11, complete sequence
Length = 148753
Score = 54.0 bits (27), Expect = 2e-004
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 783 cggcgccatcgtcggcgggcccgacaagaacgacggcttcgtggacaagcgcggcaact 841
||||||| ||||||||||||||||| || |||||| ||||| ||| |||||| |||||
Sbjct: 88670 cggcgccgtcgtcggcgggcccgacgagtacgacgacttcgccgacgagcgcgacaact 88612
>gb|AACV01011153.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg011153, whole
genome shotgun sequence
Length = 9671
Score = 54.0 bits (27), Expect = 2e-004
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 783 cggcgccatcgtcggcgggcccgacaagaacgacggcttcgtggacaagcgcggcaact 841
||||||| ||||||||||||||||| || |||||| ||||| ||| |||||| |||||
Sbjct: 9043 cggcgccgtcgtcggcgggcccgacgagtacgacgacttcgccgacgagcgcgacaact 9101
>ref|XM_476150.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1890
Score = 54.0 bits (27), Expect = 2e-004
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 783 cggcgccatcgtcggcgggcccgacaagaacgacggcttcgtggacaagcgcggcaact 841
||||||| ||||||||||||||||| || |||||| ||||| ||| |||||| |||||
Sbjct: 1374 cggcgccgtcgtcggcgggcccgacgagtacgacgacttcgccgacgagcgcgacaact 1432
>ref|NT_107225.1| Oryza sativa (japonica cultivar-group)
Length = 699699
Score = 54.0 bits (27), Expect = 2e-004
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 783 cggcgccatcgtcggcgggcccgacaagaacgacggcttcgtggacaagcgcggcaact 841
||||||| ||||||||||||||||| || |||||| ||||| ||| |||||| |||||
Sbjct: 295770 cggcgccgtcgtcggcgggcccgacgagtacgacgacttcgccgacgagcgcgacaact 295712
>gb|CH401191.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000028 genomic
scaffold, whole genome shotgun sequence
Length = 7678539
Score = 54.0 bits (27), Expect = 2e-004
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 783 cggcgccatcgtcggcgggcccgacaagaacgacggcttcgtggacaagcgcggcaact 841
||||||| ||||||||||||||||| || |||||| ||||| ||| |||||| |||||
Sbjct: 6776323 cggcgccgtcgtcggcgggcccgacgagtacgacgacttcgccgacgagcgcgacaact 6776265
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 54.0 bits (27), Expect = 2e-004
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 783 cggcgccatcgtcggcgggcccgacaagaacgacggcttcgtggacaagcgcggcaact 841
||||||| ||||||||||||||||| || |||||| ||||| ||| |||||| |||||
Sbjct: 6776323 cggcgccgtcgtcggcgggcccgacgagtacgacgacttcgccgacgagcgcgacaact 6776265
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 54.0 bits (27), Expect = 2e-004
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 783 cggcgccatcgtcggcgggcccgacaagaacgacggcttcgtggacaagcgcggcaact 841
||||||| ||||||||||||||||| || |||||| ||||| ||| |||||| |||||
Sbjct: 6857716 cggcgccgtcgtcggcgggcccgacgagtacgacgacttcgccgacgagcgcgacaact 6857658
>gb|AU173081.1|AU173081 AU173081 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R0330, mRNA sequence
Length = 450
Score = 52.0 bits (26), Expect = 7e-004
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 783 cggcgccatcgtcggcgggcccgacaagaacgac 816
||||||||| ||||||||||| ||||||||||||
Sbjct: 374 cggcgccatggtcggcgggccggacaagaacgac 407
>dbj|AK121369.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023125K15, full
insert sequence
Length = 2067
Score = 52.0 bits (26), Expect = 7e-004
Identities = 68/82 (82%)
Strand = Plus / Plus
Query: 759 caagcccaaccccaacgagctcaccggcgccatcgtcggcgggcccgacaagaacgacgg 818
|||||||||||| |||| ||||||||| |||||||||| || ||||||||||| |
Sbjct: 1684 caagcccaacccaaacgtcgccaccggcgcgctcgtcggcggtccgtacaagaacgacag 1743
Query: 819 cttcgtggacaagcgcggcaac 840
|||||| ||| |||||| ||||
Sbjct: 1744 cttcgtcgacgagcgcgacaac 1765
>ref|NT_107234.1| Oryza sativa (japonica cultivar-group)
Length = 1126496
Score = 52.0 bits (26), Expect = 7e-004
Identities = 68/82 (82%)
Strand = Plus / Minus
Query: 759 caagcccaaccccaacgagctcaccggcgccatcgtcggcgggcccgacaagaacgacgg 818
|||||||||||| |||| ||||||||| |||||||||| || ||||||||||| |
Sbjct: 998580 caagcccaacccaaacgtcgccaccggcgcgctcgtcggcggtccgtacaagaacgacag 998521
Query: 819 cttcgtggacaagcgcggcaac 840
|||||| ||| |||||| ||||
Sbjct: 998520 cttcgtcgacgagcgcgacaac 998499
>dbj|AP003614.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0481E08
Length = 171965
Score = 52.0 bits (26), Expect = 7e-004
Identities = 68/82 (82%)
Strand = Plus / Minus
Query: 759 caagcccaaccccaacgagctcaccggcgccatcgtcggcgggcccgacaagaacgacgg 818
|||||||||||| |||| ||||||||| |||||||||| || ||||||||||| |
Sbjct: 44049 caagcccaacccaaacgtcgccaccggcgcgctcgtcggcggtccgtacaagaacgacag 43990
Query: 819 cttcgtggacaagcgcggcaac 840
|||||| ||| |||||| ||||
Sbjct: 43989 cttcgtcgacgagcgcgacaac 43968
>gb|AACV01010055.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010055, whole
genome shotgun sequence
Length = 22746
Score = 52.0 bits (26), Expect = 7e-004
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 783 cggcgccatcgtcggcgggcccgacaagaacgac 816
||||||||| ||||||||||| ||||||||||||
Sbjct: 12838 cggcgccatggtcggcgggccggacaagaacgac 12871
>gb|AACV01014925.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014925, whole
genome shotgun sequence
Length = 3960
Score = 52.0 bits (26), Expect = 7e-004
Identities = 68/82 (82%)
Strand = Plus / Minus
Query: 759 caagcccaaccccaacgagctcaccggcgccatcgtcggcgggcccgacaagaacgacgg 818
|||||||||||| |||| ||||||||| |||||||||| || ||||||||||| |
Sbjct: 2335 caagcccaacccaaacgtcgccaccggcgcgctcgtcggcggtccgtacaagaacgacag 2276
Query: 819 cttcgtggacaagcgcggcaac 840
|||||| ||| |||||| ||||
Sbjct: 2275 cttcgtcgacgagcgcgacaac 2254
>gb|AACV01015966.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg015966, whole
genome shotgun sequence
Length = 38561
Score = 52.0 bits (26), Expect = 7e-004
Identities = 47/54 (87%)
Strand = Plus / Minus
Query: 764 ccaaccccaacgagctcaccggcgccatcgtcggcgggcccgacaagaacgacg 817
|||||||||||| | |||||||||| ||||||||||||| ||| || ||||||
Sbjct: 20049 ccaaccccaacgtccacaccggcgccgtcgtcggcgggccggaccagcacgacg 19996
>ref|XM_472631.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1503
Score = 52.0 bits (26), Expect = 7e-004
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 764 ccaaccccaacgagctcaccggcgccatcgtcggcgggcccgacaagaacgacg 817
|||||||||||| | |||||||||| ||||||||||||| ||| || ||||||
Sbjct: 1343 ccaaccccaacgtccacaccggcgccgtcgtcggcgggccggaccagcacgacg 1396
>ref|XM_473037.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1872
Score = 52.0 bits (26), Expect = 7e-004
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 783 cggcgccatcgtcggcgggcccgacaagaacgac 816
||||||||| ||||||||||| ||||||||||||
Sbjct: 1638 cggcgccatggtcggcgggccggacaagaacgac 1671
>ref|NT_079862.2| Oryza sativa (japonica cultivar-group)
Length = 193790
Score = 52.0 bits (26), Expect = 7e-004
Identities = 47/54 (87%)
Strand = Plus / Minus
Query: 764 ccaaccccaacgagctcaccggcgccatcgtcggcgggcccgacaagaacgacg 817
|||||||||||| | |||||||||| ||||||||||||| ||| || ||||||
Sbjct: 34102 ccaaccccaacgtccacaccggcgccgtcgtcggcgggccggaccagcacgacg 34049
>ref|NT_079863.2| Oryza sativa (japonica cultivar-group)
Length = 2656602
Score = 52.0 bits (26), Expect = 7e-004
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 783 cggcgccatcgtcggcgggcccgacaagaacgac 816
||||||||| ||||||||||| ||||||||||||
Sbjct: 2443762 cggcgccatggtcggcgggccggacaagaacgac 2443729
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,641,239
Number of Sequences: 438736
Number of extensions: 1641239
Number of successful extensions: 13472
Number of sequences better than 0.5: 93
Number of HSP's better than 0.5 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12384
Number of HSP's gapped (non-prelim): 1064
length of query: 1189
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1168
effective length of database: 2,791,206,460
effective search space: 3260129145280
effective search space used: 3260129145280
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)