BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3748501.2.2
(993 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK069907.1| Oryza sativa (japonica cultivar-group) cDNA... 617 e-174
ref|XM_473290.1| Oryza sativa (japonica cultivar-group), p... 617 e-174
ref|XM_466988.1| Oryza sativa (japonica cultivar-group), mRNA 470 e-130
gb|AACV01010174.1| Oryza sativa (japonica cultivar-group) c... 204 7e-050
ref|NT_079865.2| Oryza sativa (japonica cultivar-group) 204 7e-050
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 204 7e-050
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 204 7e-050
emb|AL663006.3|OSJN00204 Oryza sativa genomic DNA, chromoso... 204 7e-050
emb|AL662984.3|OSJN00183 Oryza sativa genomic DNA, chromoso... 204 7e-050
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 204 7e-050
dbj|AP004788.1| Oryza sativa (japonica cultivar-group) chro... 184 6e-044
dbj|AP004133.3| Oryza sativa (japonica cultivar-group) geno... 184 6e-044
dbj|AP004768.3| Oryza sativa (japonica cultivar-group) geno... 184 6e-044
gb|AACV01005009.1| Oryza sativa (japonica cultivar-group) c... 184 6e-044
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 184 6e-044
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 184 6e-044
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 184 6e-044
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 184 6e-044
gb|AY873059.1|AY873059 04ET3_387_d_005_000_017D01 Oryza sat... 92 7e-016
gb|BP185090.1|BP185090 BP185090 pNS rice panicle cDNA, flow... 92 7e-016
dbj|AK072520.1| Oryza sativa (japonica cultivar-group) cDNA... 92 7e-016
ref|NM_197225.1| Oryza sativa (japonica cultivar-group) put... 92 7e-016
gb|AU063889.1|AU063889 AU063889 Rice panicle at flowering s... 78 1e-011
gb|C71856.1|C71856 C71856 Rice panicle at flowering stage O... 76 4e-011
gb|AU063991.1|AU063991 AU063991 Rice panicle at flowering s... 66 4e-008
gb|AC078840.6| Oryza sativa chromosome 10 BAC OSJNBb0073N24... 66 4e-008
gb|AACV01021892.1| Oryza sativa (japonica cultivar-group) c... 66 4e-008
ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chr... 66 4e-008
gb|CH401254.1| Oryza sativa (japonica cultivar-group) chrom... 66 4e-008
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 66 4e-008
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 66 4e-008
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 66 4e-008
gb|AU030413.1|AU030413 AU030413 Rice cDNA from immature lea... 60 2e-006
gb|AU065317.1|AU065317 AU065317 Rice cDNA from immature lea... 60 2e-006
gb|CF323532.1|CF323532 HDN--04-B15.g1 OsHDAC1-overexpressin... 60 2e-006
gb|CD670811.1|CD670811 OsMR230 5MT resistant rice mutant cD... 60 2e-006
gb|CV723028.1|CV723028 root--02-E17.g1 Rice root lambda pha... 60 2e-006
dbj|AK058507.1| Oryza sativa (japonica cultivar-group) cDNA... 60 2e-006
gb|AC135205.4| Oryza sativa (japonica cultivar-group) chrom... 60 2e-006
gb|AC135208.3| Oryza sativa (japonica cultivar-group) chrom... 60 2e-006
gb|AACV01006284.1| Oryza sativa (japonica cultivar-group) c... 60 2e-006
ref|NM_187463.1| Oryza sativa (japonica cultivar-group), p... 60 2e-006
ref|NT_107192.1| Oryza sativa (japonica cultivar-group) 60 2e-006
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 60 2e-006
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 60 2e-006
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 60 2e-006
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 60 2e-006
gb|C72613.1|C72613 C72613 Rice panicle at flowering stage O... 52 6e-004
gb|AU029821.1|AU029821 AU029821 Rice panicle (between 3cm t... 50 0.002
gb|AU165380.1|AU165380 AU165380 Rice panicle at flowering s... 50 0.002
gb|AU312130.1|AU312130 AU312130 Oryza sativa anther cDNA Or... 50 0.002
>dbj|AK069907.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023034M24, full
insert sequence
Length = 955
Score = 617 bits (311), Expect = e-174
Identities = 478/533 (89%), Gaps = 3/533 (0%)
Strand = Plus / Plus
Query: 71 tctttcaccggcacgcaggacaagtgcgcggagtgcgacaagaccgtccacttcatcgac 130
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 68 tctttcaccggcacgcaggacaagtgcacggcgtgcgacaagaccgtccacttcatcgac 127
Query: 131 ctcctcacggccgacggcgtcacctaccataagacatgcttcaagtgcagccactgcaaa 190
|||||||| |||||||||||| | ||||| ||||| ||||||||||||||||||||||||
Sbjct: 128 ctcctcaccgccgacggcgtcccgtaccacaagacctgcttcaagtgcagccactgcaaa 187
Query: 191 gggatcctctcgatgtgcagctactcttccatggacggtgtgctgtactgcaagacccac 250
||||| |||||||||||||||||||| ||||||||||| || || |||||||||||||||
Sbjct: 188 gggattctctcgatgtgcagctactcgtccatggacggcgtcctctactgcaagacccac 247
Query: 251 ttcgagcagctcttcaaggagaccgggagcttctccaagaacttcacgccaggtggcaag 310
|| |||||||||||||||||||| ||||||||||||||||| ||| |||||||| |||
Sbjct: 248 tttgagcagctcttcaaggagacggggagcttctccaagaagttcgcgccaggttgcaga 307
Query: 311 tcttcagacaagggtgaactgacaagggcccccagcaagctatcatctgcgttttctggt 370
||| |||||||| |||||| |||||||||| |||||| ||| || |||||||||||
Sbjct: 308 tctacagacaag---gaactggcaagggccccaagcaagatatgttcagcgttttctgga 364
Query: 371 actcaggataagtgtgcagcttgccagaaaacagtgtacccgctggagaagttgactctg 430
|||||||||||||||||||| |||||||||||||||||||| || || ||| | ||| ||
Sbjct: 365 actcaggataagtgtgcagcctgccagaaaacagtgtacccactagaaaagctaactttg 424
Query: 431 gaaggcgagtcctaccacaagagctgcttcaagtgctcgcacgggggctgcatcctcacc 490
||||| ||||| |||||||||||||||||||||||||| || || ||||||||||| |||
Sbjct: 425 gaaggtgagtcataccacaagagctgcttcaagtgctctcatggaggctgcatcctgacc 484
Query: 491 acctcctcctacgccgcgctcaacggcgttctgtactgcaagatccacttcgcgcagctg 550
|||||||||||||| ||||||||||| || ||||||||||||| ||||||| |||||||
Sbjct: 485 acctcctcctacgcggcgctcaacggggtgttgtactgcaagatacacttcgggcagctg 544
Query: 551 ttcatggagaaggggagctacagccacatgatgaagaagagcccgtcccagga 603
||||||||||| |||||||||| ||||||| |||||||||| |||||||||
Sbjct: 545 ttcatggagaaagggagctacaatcacatgaagaagaagagcgagtcccagga 597
>ref|XM_473290.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 606
Score = 617 bits (311), Expect = e-174
Identities = 478/533 (89%), Gaps = 3/533 (0%)
Strand = Plus / Plus
Query: 71 tctttcaccggcacgcaggacaagtgcgcggagtgcgacaagaccgtccacttcatcgac 130
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 4 tctttcaccggcacgcaggacaagtgcacggcgtgcgacaagaccgtccacttcatcgac 63
Query: 131 ctcctcacggccgacggcgtcacctaccataagacatgcttcaagtgcagccactgcaaa 190
|||||||| |||||||||||| | ||||| ||||| ||||||||||||||||||||||||
Sbjct: 64 ctcctcaccgccgacggcgtcccgtaccacaagacctgcttcaagtgcagccactgcaaa 123
Query: 191 gggatcctctcgatgtgcagctactcttccatggacggtgtgctgtactgcaagacccac 250
||||| |||||||||||||||||||| ||||||||||| || || |||||||||||||||
Sbjct: 124 gggattctctcgatgtgcagctactcgtccatggacggcgtcctctactgcaagacccac 183
Query: 251 ttcgagcagctcttcaaggagaccgggagcttctccaagaacttcacgccaggtggcaag 310
|| |||||||||||||||||||| ||||||||||||||||| ||| |||||||| |||
Sbjct: 184 tttgagcagctcttcaaggagacggggagcttctccaagaagttcgcgccaggttgcaga 243
Query: 311 tcttcagacaagggtgaactgacaagggcccccagcaagctatcatctgcgttttctggt 370
||| |||||||| |||||| |||||||||| |||||| ||| || |||||||||||
Sbjct: 244 tctacagacaag---gaactggcaagggccccaagcaagatatgttcagcgttttctgga 300
Query: 371 actcaggataagtgtgcagcttgccagaaaacagtgtacccgctggagaagttgactctg 430
|||||||||||||||||||| |||||||||||||||||||| || || ||| | ||| ||
Sbjct: 301 actcaggataagtgtgcagcctgccagaaaacagtgtacccactagaaaagctaactttg 360
Query: 431 gaaggcgagtcctaccacaagagctgcttcaagtgctcgcacgggggctgcatcctcacc 490
||||| ||||| |||||||||||||||||||||||||| || || ||||||||||| |||
Sbjct: 361 gaaggtgagtcataccacaagagctgcttcaagtgctctcatggaggctgcatcctgacc 420
Query: 491 acctcctcctacgccgcgctcaacggcgttctgtactgcaagatccacttcgcgcagctg 550
|||||||||||||| ||||||||||| || ||||||||||||| ||||||| |||||||
Sbjct: 421 acctcctcctacgcggcgctcaacggggtgttgtactgcaagatacacttcgggcagctg 480
Query: 551 ttcatggagaaggggagctacagccacatgatgaagaagagcccgtcccagga 603
||||||||||| |||||||||| ||||||| |||||||||| |||||||||
Sbjct: 481 ttcatggagaaagggagctacaatcacatgaagaagaagagcgagtcccagga 533
>ref|XM_466988.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 621
Score = 470 bits (237), Expect = e-130
Identities = 441/509 (86%)
Strand = Plus / Plus
Query: 74 ttcaccggcacgcaggacaagtgcgcggagtgcgacaagaccgtccacttcatcgacctc 133
|||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||
Sbjct: 7 ttcaccggcacgcaggacaagtgcaaggcgtgcgacaagaccgtccatttcatcgacctc 66
Query: 134 ctcacggccgacggcgtcacctaccataagacatgcttcaagtgcagccactgcaaaggg 193
||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 67 ctcaccgccgacggcgtctcctaccacaagacatgcttcaagtgcagccactgcaagggg 126
Query: 194 atcctctcgatgtgcagctactcttccatggacggtgtgctgtactgcaagacccacttc 253
| |||||||||||| | ||||||||| ||||| ||||| |||||||||||||| |||||
Sbjct: 127 accctctcgatgtgtaactactcttcgatggatggtgtcctgtactgcaagacgcacttt 186
Query: 254 gagcagctcttcaaggagaccgggagcttctccaagaacttcacgccaggtggcaagtct 313
|||||||||||||| ||||| ||||||||||| ||||| ||| ||| |||||| || |||
Sbjct: 187 gagcagctcttcaaagagacggggagcttctcaaagaaattctcgcaaggtggtaaatct 246
Query: 314 tcagacaagggtgaactgacaagggcccccagcaagctatcatctgcgttttctggtact 373
||||| ||| | || | | ||| || || ||||||||||| || || || ||||| |||
Sbjct: 247 tcagagaagagcgaccagggaagagctcctagcaagctatcttcagcattctctggaact 306
Query: 374 caggataagtgtgcagcttgccagaaaacagtgtacccgctggagaagttgactctggaa 433
|| ||||| |||||||| ||||| ||||| |||||||| |||||||| | ||||||||
Sbjct: 307 caagataaatgtgcagcctgccaaaaaactgtgtacccattggagaagctaactctggag 366
Query: 434 ggcgagtcctaccacaagagctgcttcaagtgctcgcacgggggctgcatcctcaccacc 493
|| ||||| ||||||||||| ||||||||||||||||| |||||||||||||| || ||
Sbjct: 367 ggtgagtcttaccacaagagttgcttcaagtgctcgcatgggggctgcatcctgacgacg 426
Query: 494 tcctcctacgccgcgctcaacggcgttctgtactgcaagatccacttcgcgcagctgttc 553
|| |||||||| ||||||||||| | || |||||||||||||| ||| |||||||||||
Sbjct: 427 tcttcctacgcggcgctcaacgggatcctctactgcaagatccatttctcgcagctgttc 486
Query: 554 atggagaaggggagctacagccacatgat 582
| ||||||||| ||||||| |||| ||||
Sbjct: 487 aaggagaagggcagctacaaccacttgat 515
>gb|AACV01010174.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010174, whole
genome shotgun sequence
Length = 20753
Score = 204 bits (103), Expect = 7e-050
Identities = 157/175 (89%)
Strand = Plus / Plus
Query: 429 tggaaggcgagtcctaccacaagagctgcttcaagtgctcgcacgggggctgcatcctca 488
||||||| ||||| |||||||||||||||||||||||||| || || ||||||||||| |
Sbjct: 9163 tggaaggtgagtcataccacaagagctgcttcaagtgctctcatggaggctgcatcctga 9222
Query: 489 ccacctcctcctacgccgcgctcaacggcgttctgtactgcaagatccacttcgcgcagc 548
|||||||||||||||| ||||||||||| || ||||||||||||| ||||||| |||||
Sbjct: 9223 ccacctcctcctacgcggcgctcaacggggtgttgtactgcaagatacacttcgggcagc 9282
Query: 549 tgttcatggagaaggggagctacagccacatgatgaagaagagcccgtcccagga 603
||||||||||||| |||||||||| ||||||| |||||||||| |||||||||
Sbjct: 9283 tgttcatggagaaagggagctacaatcacatgaagaagaagagcgagtcccagga 9337
Score = 198 bits (100), Expect = 4e-048
Identities = 124/132 (93%)
Strand = Plus / Plus
Query: 71 tctttcaccggcacgcaggacaagtgcgcggagtgcgacaagaccgtccacttcatcgac 130
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 8196 tctttcaccggcacgcaggacaagtgcacggcgtgcgacaagaccgtccacttcatcgac 8255
Query: 131 ctcctcacggccgacggcgtcacctaccataagacatgcttcaagtgcagccactgcaaa 190
|||||||| |||||||||||| | ||||| ||||| ||||||||||||||||||||||||
Sbjct: 8256 ctcctcaccgccgacggcgtcccgtaccacaagacctgcttcaagtgcagccactgcaaa 8315
Query: 191 gggatcctctcg 202
||||| ||||||
Sbjct: 8316 gggattctctcg 8327
Score = 141 bits (71), Expect = 8e-031
Identities = 95/103 (92%)
Strand = Plus / Plus
Query: 202 gatgtgcagctactcttccatggacggtgtgctgtactgcaagacccacttcgagcagct 261
||||||||||||||| ||||||||||| || || ||||||||||||||||| ||||||||
Sbjct: 8444 gatgtgcagctactcgtccatggacggcgtcctctactgcaagacccactttgagcagct 8503
Query: 262 cttcaaggagaccgggagcttctccaagaacttcacgccaggt 304
|||||||||||| ||||||||||||||||| ||| ||||||||
Sbjct: 8504 cttcaaggagacggggagcttctccaagaagttcgcgccaggt 8546
Score = 101 bits (51), Expect = 7e-019
Identities = 72/79 (91%)
Strand = Plus / Plus
Query: 333 caagggcccccagcaagctatcatctgcgttttctggtactcaggataagtgtgcagctt 392
|||||||||| |||||| ||| || ||||||||||| |||||||||||||||||||| |
Sbjct: 8752 caagggccccaagcaagatatgttcagcgttttctggaactcaggataagtgtgcagcct 8811
Query: 393 gccagaaaacagtgtaccc 411
|||||||||||||||||||
Sbjct: 8812 gccagaaaacagtgtaccc 8830
>ref|NT_079865.2| Oryza sativa (japonica cultivar-group)
Length = 3674553
Score = 204 bits (103), Expect = 7e-050
Identities = 157/175 (89%)
Strand = Plus / Minus
Query: 429 tggaaggcgagtcctaccacaagagctgcttcaagtgctcgcacgggggctgcatcctca 488
||||||| ||||| |||||||||||||||||||||||||| || || ||||||||||| |
Sbjct: 371568 tggaaggtgagtcataccacaagagctgcttcaagtgctctcatggaggctgcatcctga 371509
Query: 489 ccacctcctcctacgccgcgctcaacggcgttctgtactgcaagatccacttcgcgcagc 548
|||||||||||||||| ||||||||||| || ||||||||||||| ||||||| |||||
Sbjct: 371508 ccacctcctcctacgcggcgctcaacggggtgttgtactgcaagatacacttcgggcagc 371449
Query: 549 tgttcatggagaaggggagctacagccacatgatgaagaagagcccgtcccagga 603
||||||||||||| |||||||||| ||||||| |||||||||| |||||||||
Sbjct: 371448 tgttcatggagaaagggagctacaatcacatgaagaagaagagcgagtcccagga 371394
Score = 198 bits (100), Expect = 4e-048
Identities = 124/132 (93%)
Strand = Plus / Minus
Query: 71 tctttcaccggcacgcaggacaagtgcgcggagtgcgacaagaccgtccacttcatcgac 130
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 372535 tctttcaccggcacgcaggacaagtgcacggcgtgcgacaagaccgtccacttcatcgac 372476
Query: 131 ctcctcacggccgacggcgtcacctaccataagacatgcttcaagtgcagccactgcaaa 190
|||||||| |||||||||||| | ||||| ||||| ||||||||||||||||||||||||
Sbjct: 372475 ctcctcaccgccgacggcgtcccgtaccacaagacctgcttcaagtgcagccactgcaaa 372416
Query: 191 gggatcctctcg 202
||||| ||||||
Sbjct: 372415 gggattctctcg 372404
Score = 141 bits (71), Expect = 8e-031
Identities = 95/103 (92%)
Strand = Plus / Minus
Query: 202 gatgtgcagctactcttccatggacggtgtgctgtactgcaagacccacttcgagcagct 261
||||||||||||||| ||||||||||| || || ||||||||||||||||| ||||||||
Sbjct: 372287 gatgtgcagctactcgtccatggacggcgtcctctactgcaagacccactttgagcagct 372228
Query: 262 cttcaaggagaccgggagcttctccaagaacttcacgccaggt 304
|||||||||||| ||||||||||||||||| ||| ||||||||
Sbjct: 372227 cttcaaggagacggggagcttctccaagaagttcgcgccaggt 372185
Score = 101 bits (51), Expect = 7e-019
Identities = 72/79 (91%)
Strand = Plus / Minus
Query: 333 caagggcccccagcaagctatcatctgcgttttctggtactcaggataagtgtgcagctt 392
|||||||||| |||||| ||| || ||||||||||| |||||||||||||||||||| |
Sbjct: 371979 caagggccccaagcaagatatgttcagcgttttctggaactcaggataagtgtgcagcct 371920
Query: 393 gccagaaaacagtgtaccc 411
|||||||||||||||||||
Sbjct: 371919 gccagaaaacagtgtaccc 371901
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 204 bits (103), Expect = 7e-050
Identities = 157/175 (89%)
Strand = Plus / Minus
Query: 429 tggaaggcgagtcctaccacaagagctgcttcaagtgctcgcacgggggctgcatcctca 488
||||||| ||||| |||||||||||||||||||||||||| || || ||||||||||| |
Sbjct: 4426768 tggaaggtgagtcataccacaagagctgcttcaagtgctctcatggaggctgcatcctga 4426709
Query: 489 ccacctcctcctacgccgcgctcaacggcgttctgtactgcaagatccacttcgcgcagc 548
|||||||||||||||| ||||||||||| || ||||||||||||| ||||||| |||||
Sbjct: 4426708 ccacctcctcctacgcggcgctcaacggggtgttgtactgcaagatacacttcgggcagc 4426649
Query: 549 tgttcatggagaaggggagctacagccacatgatgaagaagagcccgtcccagga 603
||||||||||||| |||||||||| ||||||| |||||||||| |||||||||
Sbjct: 4426648 tgttcatggagaaagggagctacaatcacatgaagaagaagagcgagtcccagga 4426594
Score = 198 bits (100), Expect = 4e-048
Identities = 124/132 (93%)
Strand = Plus / Minus
Query: 71 tctttcaccggcacgcaggacaagtgcgcggagtgcgacaagaccgtccacttcatcgac 130
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 4427735 tctttcaccggcacgcaggacaagtgcacggcgtgcgacaagaccgtccacttcatcgac 4427676
Query: 131 ctcctcacggccgacggcgtcacctaccataagacatgcttcaagtgcagccactgcaaa 190
|||||||| |||||||||||| | ||||| ||||| ||||||||||||||||||||||||
Sbjct: 4427675 ctcctcaccgccgacggcgtcccgtaccacaagacctgcttcaagtgcagccactgcaaa 4427616
Query: 191 gggatcctctcg 202
||||| ||||||
Sbjct: 4427615 gggattctctcg 4427604
Score = 141 bits (71), Expect = 8e-031
Identities = 95/103 (92%)
Strand = Plus / Minus
Query: 202 gatgtgcagctactcttccatggacggtgtgctgtactgcaagacccacttcgagcagct 261
||||||||||||||| ||||||||||| || || ||||||||||||||||| ||||||||
Sbjct: 4427487 gatgtgcagctactcgtccatggacggcgtcctctactgcaagacccactttgagcagct 4427428
Query: 262 cttcaaggagaccgggagcttctccaagaacttcacgccaggt 304
|||||||||||| ||||||||||||||||| ||| ||||||||
Sbjct: 4427427 cttcaaggagacggggagcttctccaagaagttcgcgccaggt 4427385
Score = 101 bits (51), Expect = 7e-019
Identities = 72/79 (91%)
Strand = Plus / Minus
Query: 333 caagggcccccagcaagctatcatctgcgttttctggtactcaggataagtgtgcagctt 392
|||||||||| |||||| ||| || ||||||||||| |||||||||||||||||||| |
Sbjct: 4427179 caagggccccaagcaagatatgttcagcgttttctggaactcaggataagtgtgcagcct 4427120
Query: 393 gccagaaaacagtgtaccc 411
|||||||||||||||||||
Sbjct: 4427119 gccagaaaacagtgtaccc 4427101
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 204 bits (103), Expect = 7e-050
Identities = 157/175 (89%)
Strand = Plus / Minus
Query: 429 tggaaggcgagtcctaccacaagagctgcttcaagtgctcgcacgggggctgcatcctca 488
||||||| ||||| |||||||||||||||||||||||||| || || ||||||||||| |
Sbjct: 23570867 tggaaggtgagtcataccacaagagctgcttcaagtgctctcatggaggctgcatcctga 23570808
Query: 489 ccacctcctcctacgccgcgctcaacggcgttctgtactgcaagatccacttcgcgcagc 548
|||||||||||||||| ||||||||||| || ||||||||||||| ||||||| |||||
Sbjct: 23570807 ccacctcctcctacgcggcgctcaacggggtgttgtactgcaagatacacttcgggcagc 23570748
Query: 549 tgttcatggagaaggggagctacagccacatgatgaagaagagcccgtcccagga 603
||||||||||||| |||||||||| ||||||| |||||||||| |||||||||
Sbjct: 23570747 tgttcatggagaaagggagctacaatcacatgaagaagaagagcgagtcccagga 23570693
Score = 198 bits (100), Expect = 4e-048
Identities = 124/132 (93%)
Strand = Plus / Minus
Query: 71 tctttcaccggcacgcaggacaagtgcgcggagtgcgacaagaccgtccacttcatcgac 130
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 23571834 tctttcaccggcacgcaggacaagtgcacggcgtgcgacaagaccgtccacttcatcgac 23571775
Query: 131 ctcctcacggccgacggcgtcacctaccataagacatgcttcaagtgcagccactgcaaa 190
|||||||| |||||||||||| | ||||| ||||| ||||||||||||||||||||||||
Sbjct: 23571774 ctcctcaccgccgacggcgtcccgtaccacaagacctgcttcaagtgcagccactgcaaa 23571715
Query: 191 gggatcctctcg 202
||||| ||||||
Sbjct: 23571714 gggattctctcg 23571703
Score = 141 bits (71), Expect = 8e-031
Identities = 95/103 (92%)
Strand = Plus / Minus
Query: 202 gatgtgcagctactcttccatggacggtgtgctgtactgcaagacccacttcgagcagct 261
||||||||||||||| ||||||||||| || || ||||||||||||||||| ||||||||
Sbjct: 23571586 gatgtgcagctactcgtccatggacggcgtcctctactgcaagacccactttgagcagct 23571527
Query: 262 cttcaaggagaccgggagcttctccaagaacttcacgccaggt 304
|||||||||||| ||||||||||||||||| ||| ||||||||
Sbjct: 23571526 cttcaaggagacggggagcttctccaagaagttcgcgccaggt 23571484
Score = 101 bits (51), Expect = 7e-019
Identities = 72/79 (91%)
Strand = Plus / Minus
Query: 333 caagggcccccagcaagctatcatctgcgttttctggtactcaggataagtgtgcagctt 392
|||||||||| |||||| ||| || ||||||||||| |||||||||||||||||||| |
Sbjct: 23571278 caagggccccaagcaagatatgttcagcgttttctggaactcaggataagtgtgcagcct 23571219
Query: 393 gccagaaaacagtgtaccc 411
|||||||||||||||||||
Sbjct: 23571218 gccagaaaacagtgtaccc 23571200
>emb|AL663006.3|OSJN00204 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0039L24,
complete sequence
Length = 121056
Score = 204 bits (103), Expect = 7e-050
Identities = 157/175 (89%)
Strand = Plus / Minus
Query: 429 tggaaggcgagtcctaccacaagagctgcttcaagtgctcgcacgggggctgcatcctca 488
||||||| ||||| |||||||||||||||||||||||||| || || ||||||||||| |
Sbjct: 34542 tggaaggtgagtcataccacaagagctgcttcaagtgctctcatggaggctgcatcctga 34483
Query: 489 ccacctcctcctacgccgcgctcaacggcgttctgtactgcaagatccacttcgcgcagc 548
|||||||||||||||| ||||||||||| || ||||||||||||| ||||||| |||||
Sbjct: 34482 ccacctcctcctacgcggcgctcaacggggtgttgtactgcaagatacacttcgggcagc 34423
Query: 549 tgttcatggagaaggggagctacagccacatgatgaagaagagcccgtcccagga 603
||||||||||||| |||||||||| ||||||| |||||||||| |||||||||
Sbjct: 34422 tgttcatggagaaagggagctacaatcacatgaagaagaagagcgagtcccagga 34368
Score = 198 bits (100), Expect = 4e-048
Identities = 124/132 (93%)
Strand = Plus / Minus
Query: 71 tctttcaccggcacgcaggacaagtgcgcggagtgcgacaagaccgtccacttcatcgac 130
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 35509 tctttcaccggcacgcaggacaagtgcacggcgtgcgacaagaccgtccacttcatcgac 35450
Query: 131 ctcctcacggccgacggcgtcacctaccataagacatgcttcaagtgcagccactgcaaa 190
|||||||| |||||||||||| | ||||| ||||| ||||||||||||||||||||||||
Sbjct: 35449 ctcctcaccgccgacggcgtcccgtaccacaagacctgcttcaagtgcagccactgcaaa 35390
Query: 191 gggatcctctcg 202
||||| ||||||
Sbjct: 35389 gggattctctcg 35378
Score = 141 bits (71), Expect = 8e-031
Identities = 95/103 (92%)
Strand = Plus / Minus
Query: 202 gatgtgcagctactcttccatggacggtgtgctgtactgcaagacccacttcgagcagct 261
||||||||||||||| ||||||||||| || || ||||||||||||||||| ||||||||
Sbjct: 35261 gatgtgcagctactcgtccatggacggcgtcctctactgcaagacccactttgagcagct 35202
Query: 262 cttcaaggagaccgggagcttctccaagaacttcacgccaggt 304
|||||||||||| ||||||||||||||||| ||| ||||||||
Sbjct: 35201 cttcaaggagacggggagcttctccaagaagttcgcgccaggt 35159
Score = 101 bits (51), Expect = 7e-019
Identities = 72/79 (91%)
Strand = Plus / Minus
Query: 333 caagggcccccagcaagctatcatctgcgttttctggtactcaggataagtgtgcagctt 392
|||||||||| |||||| ||| || ||||||||||| |||||||||||||||||||| |
Sbjct: 34953 caagggccccaagcaagatatgttcagcgttttctggaactcaggataagtgtgcagcct 34894
Query: 393 gccagaaaacagtgtaccc 411
|||||||||||||||||||
Sbjct: 34893 gccagaaaacagtgtaccc 34875
>emb|AL662984.3|OSJN00183 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0081C01,
complete sequence
Length = 140454
Score = 204 bits (103), Expect = 7e-050
Identities = 157/175 (89%)
Strand = Plus / Minus
Query: 429 tggaaggcgagtcctaccacaagagctgcttcaagtgctcgcacgggggctgcatcctca 488
||||||| ||||| |||||||||||||||||||||||||| || || ||||||||||| |
Sbjct: 131870 tggaaggtgagtcataccacaagagctgcttcaagtgctctcatggaggctgcatcctga 131811
Query: 489 ccacctcctcctacgccgcgctcaacggcgttctgtactgcaagatccacttcgcgcagc 548
|||||||||||||||| ||||||||||| || ||||||||||||| ||||||| |||||
Sbjct: 131810 ccacctcctcctacgcggcgctcaacggggtgttgtactgcaagatacacttcgggcagc 131751
Query: 549 tgttcatggagaaggggagctacagccacatgatgaagaagagcccgtcccagga 603
||||||||||||| |||||||||| ||||||| |||||||||| |||||||||
Sbjct: 131750 tgttcatggagaaagggagctacaatcacatgaagaagaagagcgagtcccagga 131696
Score = 198 bits (100), Expect = 4e-048
Identities = 124/132 (93%)
Strand = Plus / Minus
Query: 71 tctttcaccggcacgcaggacaagtgcgcggagtgcgacaagaccgtccacttcatcgac 130
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 132837 tctttcaccggcacgcaggacaagtgcacggcgtgcgacaagaccgtccacttcatcgac 132778
Query: 131 ctcctcacggccgacggcgtcacctaccataagacatgcttcaagtgcagccactgcaaa 190
|||||||| |||||||||||| | ||||| ||||| ||||||||||||||||||||||||
Sbjct: 132777 ctcctcaccgccgacggcgtcccgtaccacaagacctgcttcaagtgcagccactgcaaa 132718
Query: 191 gggatcctctcg 202
||||| ||||||
Sbjct: 132717 gggattctctcg 132706
Score = 141 bits (71), Expect = 8e-031
Identities = 95/103 (92%)
Strand = Plus / Minus
Query: 202 gatgtgcagctactcttccatggacggtgtgctgtactgcaagacccacttcgagcagct 261
||||||||||||||| ||||||||||| || || ||||||||||||||||| ||||||||
Sbjct: 132589 gatgtgcagctactcgtccatggacggcgtcctctactgcaagacccactttgagcagct 132530
Query: 262 cttcaaggagaccgggagcttctccaagaacttcacgccaggt 304
|||||||||||| ||||||||||||||||| ||| ||||||||
Sbjct: 132529 cttcaaggagacggggagcttctccaagaagttcgcgccaggt 132487
Score = 101 bits (51), Expect = 7e-019
Identities = 72/79 (91%)
Strand = Plus / Minus
Query: 333 caagggcccccagcaagctatcatctgcgttttctggtactcaggataagtgtgcagctt 392
|||||||||| |||||| ||| || ||||||||||| |||||||||||||||||||| |
Sbjct: 132281 caagggccccaagcaagatatgttcagcgttttctggaactcaggataagtgtgcagcct 132222
Query: 393 gccagaaaacagtgtaccc 411
|||||||||||||||||||
Sbjct: 132221 gccagaaaacagtgtaccc 132203
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 204 bits (103), Expect = 7e-050
Identities = 157/175 (89%)
Strand = Plus / Minus
Query: 429 tggaaggcgagtcctaccacaagagctgcttcaagtgctcgcacgggggctgcatcctca 488
||||||| ||||| |||||||||||||||||||||||||| || || ||||||||||| |
Sbjct: 26594984 tggaaggtgagtcataccacaagagctgcttcaagtgctctcatggaggctgcatcctga 26594925
Query: 489 ccacctcctcctacgccgcgctcaacggcgttctgtactgcaagatccacttcgcgcagc 548
|||||||||||||||| ||||||||||| || ||||||||||||| ||||||| |||||
Sbjct: 26594924 ccacctcctcctacgcggcgctcaacggggtgttgtactgcaagatacacttcgggcagc 26594865
Query: 549 tgttcatggagaaggggagctacagccacatgatgaagaagagcccgtcccagga 603
||||||||||||| |||||||||| ||||||| |||||||||| |||||||||
Sbjct: 26594864 tgttcatggagaaagggagctacaatcacatgaagaagaagagcgagtcccagga 26594810
Score = 198 bits (100), Expect = 4e-048
Identities = 124/132 (93%)
Strand = Plus / Minus
Query: 71 tctttcaccggcacgcaggacaagtgcgcggagtgcgacaagaccgtccacttcatcgac 130
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 26595951 tctttcaccggcacgcaggacaagtgcacggcgtgcgacaagaccgtccacttcatcgac 26595892
Query: 131 ctcctcacggccgacggcgtcacctaccataagacatgcttcaagtgcagccactgcaaa 190
|||||||| |||||||||||| | ||||| ||||| ||||||||||||||||||||||||
Sbjct: 26595891 ctcctcaccgccgacggcgtcccgtaccacaagacctgcttcaagtgcagccactgcaaa 26595832
Query: 191 gggatcctctcg 202
||||| ||||||
Sbjct: 26595831 gggattctctcg 26595820
Score = 141 bits (71), Expect = 8e-031
Identities = 95/103 (92%)
Strand = Plus / Minus
Query: 202 gatgtgcagctactcttccatggacggtgtgctgtactgcaagacccacttcgagcagct 261
||||||||||||||| ||||||||||| || || ||||||||||||||||| ||||||||
Sbjct: 26595703 gatgtgcagctactcgtccatggacggcgtcctctactgcaagacccactttgagcagct 26595644
Query: 262 cttcaaggagaccgggagcttctccaagaacttcacgccaggt 304
|||||||||||| ||||||||||||||||| ||| ||||||||
Sbjct: 26595643 cttcaaggagacggggagcttctccaagaagttcgcgccaggt 26595601
Score = 101 bits (51), Expect = 7e-019
Identities = 72/79 (91%)
Strand = Plus / Minus
Query: 333 caagggcccccagcaagctatcatctgcgttttctggtactcaggataagtgtgcagctt 392
|||||||||| |||||| ||| || ||||||||||| |||||||||||||||||||| |
Sbjct: 26595395 caagggccccaagcaagatatgttcagcgttttctggaactcaggataagtgtgcagcct 26595336
Query: 393 gccagaaaacagtgtaccc 411
|||||||||||||||||||
Sbjct: 26595335 gccagaaaacagtgtaccc 26595317
>dbj|AP004788.1| Oryza sativa (japonica cultivar-group) chromosome 2 clone P0408D11, ***
SEQUENCING IN PROGRESS ***
Length = 138934
Score = 184 bits (93), Expect = 6e-044
Identities = 120/129 (93%)
Strand = Plus / Plus
Query: 74 ttcaccggcacgcaggacaagtgcgcggagtgcgacaagaccgtccacttcatcgacctc 133
|||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||
Sbjct: 77847 ttcaccggcacgcaggacaagtgcaaggcgtgcgacaagaccgtccatttcatcgacctc 77906
Query: 134 ctcacggccgacggcgtcacctaccataagacatgcttcaagtgcagccactgcaaaggg 193
||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 77907 ctcaccgccgacggcgtctcctaccacaagacatgcttcaagtgcagccactgcaagggg 77966
Query: 194 atcctctcg 202
| |||||||
Sbjct: 77967 accctctcg 77975
Score = 155 bits (78), Expect = 5e-035
Identities = 138/158 (87%)
Strand = Plus / Plus
Query: 425 actctggaaggcgagtcctaccacaagagctgcttcaagtgctcgcacgggggctgcatc 484
|||||||| || ||||| ||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 78910 actctggagggtgagtcttaccacaagagttgcttcaagtgctcgcatgggggctgcatc 78969
Query: 485 ctcaccacctcctcctacgccgcgctcaacggcgttctgtactgcaagatccacttcgcg 544
|| || || || |||||||| ||||||||||| | || |||||||||||||| ||| ||
Sbjct: 78970 ctgacgacgtcttcctacgcggcgctcaacgggatcctctactgcaagatccatttctcg 79029
Query: 545 cagctgttcatggagaaggggagctacagccacatgat 582
|||||||||| ||||||||| ||||||| |||| ||||
Sbjct: 79030 cagctgttcaaggagaagggcagctacaaccacttgat 79067
Score = 101 bits (51), Expect = 7e-019
Identities = 90/103 (87%)
Strand = Plus / Plus
Query: 202 gatgtgcagctactcttccatggacggtgtgctgtactgcaagacccacttcgagcagct 261
|||||| | ||||||||| ||||| ||||| |||||||||||||| ||||| ||||||||
Sbjct: 78078 gatgtgtaactactcttcgatggatggtgtcctgtactgcaagacgcactttgagcagct 78137
Query: 262 cttcaaggagaccgggagcttctccaagaacttcacgccaggt 304
|||||| ||||| ||||||||||| ||||| ||| ||| ||||
Sbjct: 78138 cttcaaagagacggggagcttctcaaagaaattctcgcaaggt 78180
Score = 60.0 bits (30), Expect = 2e-006
Identities = 66/78 (84%)
Strand = Plus / Plus
Query: 344 agcaagctatcatctgcgttttctggtactcaggataagtgtgcagcttgccagaaaaca 403
||||||||||| || || || ||||| ||||| ||||| |||||||| ||||| |||||
Sbjct: 78423 agcaagctatcttcagcattctctggaactcaagataaatgtgcagcctgccaaaaaact 78482
Query: 404 gtgtacccgctggagaag 421
|||||||| ||||||||
Sbjct: 78483 gtgtacccattggagaag 78500
>dbj|AP004133.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1112_G03
Length = 106401
Score = 184 bits (93), Expect = 6e-044
Identities = 120/129 (93%)
Strand = Plus / Minus
Query: 74 ttcaccggcacgcaggacaagtgcgcggagtgcgacaagaccgtccacttcatcgacctc 133
|||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||
Sbjct: 6145 ttcaccggcacgcaggacaagtgcaaggcgtgcgacaagaccgtccatttcatcgacctc 6086
Query: 134 ctcacggccgacggcgtcacctaccataagacatgcttcaagtgcagccactgcaaaggg 193
||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 6085 ctcaccgccgacggcgtctcctaccacaagacatgcttcaagtgcagccactgcaagggg 6026
Query: 194 atcctctcg 202
| |||||||
Sbjct: 6025 accctctcg 6017
Score = 155 bits (78), Expect = 5e-035
Identities = 138/158 (87%)
Strand = Plus / Minus
Query: 425 actctggaaggcgagtcctaccacaagagctgcttcaagtgctcgcacgggggctgcatc 484
|||||||| || ||||| ||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 5082 actctggagggtgagtcttaccacaagagttgcttcaagtgctcgcatgggggctgcatc 5023
Query: 485 ctcaccacctcctcctacgccgcgctcaacggcgttctgtactgcaagatccacttcgcg 544
|| || || || |||||||| ||||||||||| | || |||||||||||||| ||| ||
Sbjct: 5022 ctgacgacgtcttcctacgcggcgctcaacgggatcctctactgcaagatccatttctcg 4963
Query: 545 cagctgttcatggagaaggggagctacagccacatgat 582
|||||||||| ||||||||| ||||||| |||| ||||
Sbjct: 4962 cagctgttcaaggagaagggcagctacaaccacttgat 4925
Score = 101 bits (51), Expect = 7e-019
Identities = 90/103 (87%)
Strand = Plus / Minus
Query: 202 gatgtgcagctactcttccatggacggtgtgctgtactgcaagacccacttcgagcagct 261
|||||| | ||||||||| ||||| ||||| |||||||||||||| ||||| ||||||||
Sbjct: 5914 gatgtgtaactactcttcgatggatggtgtcctgtactgcaagacgcactttgagcagct 5855
Query: 262 cttcaaggagaccgggagcttctccaagaacttcacgccaggt 304
|||||| ||||| ||||||||||| ||||| ||| ||| ||||
Sbjct: 5854 cttcaaagagacggggagcttctcaaagaaattctcgcaaggt 5812
Score = 60.0 bits (30), Expect = 2e-006
Identities = 66/78 (84%)
Strand = Plus / Minus
Query: 344 agcaagctatcatctgcgttttctggtactcaggataagtgtgcagcttgccagaaaaca 403
||||||||||| || || || ||||| ||||| ||||| |||||||| ||||| |||||
Sbjct: 5569 agcaagctatcttcagcattctctggaactcaagataaatgtgcagcctgccaaaaaact 5510
Query: 404 gtgtacccgctggagaag 421
|||||||| ||||||||
Sbjct: 5509 gtgtacccattggagaag 5492
>dbj|AP004768.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0010C01
Length = 186185
Score = 184 bits (93), Expect = 6e-044
Identities = 120/129 (93%)
Strand = Plus / Minus
Query: 74 ttcaccggcacgcaggacaagtgcgcggagtgcgacaagaccgtccacttcatcgacctc 133
|||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||
Sbjct: 162215 ttcaccggcacgcaggacaagtgcaaggcgtgcgacaagaccgtccatttcatcgacctc 162156
Query: 134 ctcacggccgacggcgtcacctaccataagacatgcttcaagtgcagccactgcaaaggg 193
||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 162155 ctcaccgccgacggcgtctcctaccacaagacatgcttcaagtgcagccactgcaagggg 162096
Query: 194 atcctctcg 202
| |||||||
Sbjct: 162095 accctctcg 162087
Score = 155 bits (78), Expect = 5e-035
Identities = 138/158 (87%)
Strand = Plus / Minus
Query: 425 actctggaaggcgagtcctaccacaagagctgcttcaagtgctcgcacgggggctgcatc 484
|||||||| || ||||| ||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 161152 actctggagggtgagtcttaccacaagagttgcttcaagtgctcgcatgggggctgcatc 161093
Query: 485 ctcaccacctcctcctacgccgcgctcaacggcgttctgtactgcaagatccacttcgcg 544
|| || || || |||||||| ||||||||||| | || |||||||||||||| ||| ||
Sbjct: 161092 ctgacgacgtcttcctacgcggcgctcaacgggatcctctactgcaagatccatttctcg 161033
Query: 545 cagctgttcatggagaaggggagctacagccacatgat 582
|||||||||| ||||||||| ||||||| |||| ||||
Sbjct: 161032 cagctgttcaaggagaagggcagctacaaccacttgat 160995
Score = 101 bits (51), Expect = 7e-019
Identities = 90/103 (87%)
Strand = Plus / Minus
Query: 202 gatgtgcagctactcttccatggacggtgtgctgtactgcaagacccacttcgagcagct 261
|||||| | ||||||||| ||||| ||||| |||||||||||||| ||||| ||||||||
Sbjct: 161984 gatgtgtaactactcttcgatggatggtgtcctgtactgcaagacgcactttgagcagct 161925
Query: 262 cttcaaggagaccgggagcttctccaagaacttcacgccaggt 304
|||||| ||||| ||||||||||| ||||| ||| ||| ||||
Sbjct: 161924 cttcaaagagacggggagcttctcaaagaaattctcgcaaggt 161882
Score = 60.0 bits (30), Expect = 2e-006
Identities = 66/78 (84%)
Strand = Plus / Minus
Query: 344 agcaagctatcatctgcgttttctggtactcaggataagtgtgcagcttgccagaaaaca 403
||||||||||| || || || ||||| ||||| ||||| |||||||| ||||| |||||
Sbjct: 161639 agcaagctatcttcagcattctctggaactcaagataaatgtgcagcctgccaaaaaact 161580
Query: 404 gtgtacccgctggagaag 421
|||||||| ||||||||
Sbjct: 161579 gtgtacccattggagaag 161562
>gb|AACV01005009.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005009, whole
genome shotgun sequence
Length = 78753
Score = 184 bits (93), Expect = 6e-044
Identities = 120/129 (93%)
Strand = Plus / Plus
Query: 74 ttcaccggcacgcaggacaagtgcgcggagtgcgacaagaccgtccacttcatcgacctc 133
|||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||
Sbjct: 76473 ttcaccggcacgcaggacaagtgcaaggcgtgcgacaagaccgtccatttcatcgacctc 76532
Query: 134 ctcacggccgacggcgtcacctaccataagacatgcttcaagtgcagccactgcaaaggg 193
||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 76533 ctcaccgccgacggcgtctcctaccacaagacatgcttcaagtgcagccactgcaagggg 76592
Query: 194 atcctctcg 202
| |||||||
Sbjct: 76593 accctctcg 76601
Score = 155 bits (78), Expect = 5e-035
Identities = 138/158 (87%)
Strand = Plus / Plus
Query: 425 actctggaaggcgagtcctaccacaagagctgcttcaagtgctcgcacgggggctgcatc 484
|||||||| || ||||| ||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 77536 actctggagggtgagtcttaccacaagagttgcttcaagtgctcgcatgggggctgcatc 77595
Query: 485 ctcaccacctcctcctacgccgcgctcaacggcgttctgtactgcaagatccacttcgcg 544
|| || || || |||||||| ||||||||||| | || |||||||||||||| ||| ||
Sbjct: 77596 ctgacgacgtcttcctacgcggcgctcaacgggatcctctactgcaagatccatttctcg 77655
Query: 545 cagctgttcatggagaaggggagctacagccacatgat 582
|||||||||| ||||||||| ||||||| |||| ||||
Sbjct: 77656 cagctgttcaaggagaagggcagctacaaccacttgat 77693
Score = 101 bits (51), Expect = 7e-019
Identities = 90/103 (87%)
Strand = Plus / Plus
Query: 202 gatgtgcagctactcttccatggacggtgtgctgtactgcaagacccacttcgagcagct 261
|||||| | ||||||||| ||||| ||||| |||||||||||||| ||||| ||||||||
Sbjct: 76704 gatgtgtaactactcttcgatggatggtgtcctgtactgcaagacgcactttgagcagct 76763
Query: 262 cttcaaggagaccgggagcttctccaagaacttcacgccaggt 304
|||||| ||||| ||||||||||| ||||| ||| ||| ||||
Sbjct: 76764 cttcaaagagacggggagcttctcaaagaaattctcgcaaggt 76806
Score = 60.0 bits (30), Expect = 2e-006
Identities = 66/78 (84%)
Strand = Plus / Plus
Query: 344 agcaagctatcatctgcgttttctggtactcaggataagtgtgcagcttgccagaaaaca 403
||||||||||| || || || ||||| ||||| ||||| |||||||| ||||| |||||
Sbjct: 77049 agcaagctatcttcagcattctctggaactcaagataaatgtgcagcctgccaaaaaact 77108
Query: 404 gtgtacccgctggagaag 421
|||||||| ||||||||
Sbjct: 77109 gtgtacccattggagaag 77126
>ref|NT_107181.1| Oryza sativa (japonica cultivar-group)
Length = 9248309
Score = 184 bits (93), Expect = 6e-044
Identities = 120/129 (93%)
Strand = Plus / Minus
Query: 74 ttcaccggcacgcaggacaagtgcgcggagtgcgacaagaccgtccacttcatcgacctc 133
|||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||
Sbjct: 924538 ttcaccggcacgcaggacaagtgcaaggcgtgcgacaagaccgtccatttcatcgacctc 924479
Query: 134 ctcacggccgacggcgtcacctaccataagacatgcttcaagtgcagccactgcaaaggg 193
||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 924478 ctcaccgccgacggcgtctcctaccacaagacatgcttcaagtgcagccactgcaagggg 924419
Query: 194 atcctctcg 202
| |||||||
Sbjct: 924418 accctctcg 924410
Score = 155 bits (78), Expect = 5e-035
Identities = 138/158 (87%)
Strand = Plus / Minus
Query: 425 actctggaaggcgagtcctaccacaagagctgcttcaagtgctcgcacgggggctgcatc 484
|||||||| || ||||| ||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 923475 actctggagggtgagtcttaccacaagagttgcttcaagtgctcgcatgggggctgcatc 923416
Query: 485 ctcaccacctcctcctacgccgcgctcaacggcgttctgtactgcaagatccacttcgcg 544
|| || || || |||||||| ||||||||||| | || |||||||||||||| ||| ||
Sbjct: 923415 ctgacgacgtcttcctacgcggcgctcaacgggatcctctactgcaagatccatttctcg 923356
Query: 545 cagctgttcatggagaaggggagctacagccacatgat 582
|||||||||| ||||||||| ||||||| |||| ||||
Sbjct: 923355 cagctgttcaaggagaagggcagctacaaccacttgat 923318
Score = 101 bits (51), Expect = 7e-019
Identities = 90/103 (87%)
Strand = Plus / Minus
Query: 202 gatgtgcagctactcttccatggacggtgtgctgtactgcaagacccacttcgagcagct 261
|||||| | ||||||||| ||||| ||||| |||||||||||||| ||||| ||||||||
Sbjct: 924307 gatgtgtaactactcttcgatggatggtgtcctgtactgcaagacgcactttgagcagct 924248
Query: 262 cttcaaggagaccgggagcttctccaagaacttcacgccaggt 304
|||||| ||||| ||||||||||| ||||| ||| ||| ||||
Sbjct: 924247 cttcaaagagacggggagcttctcaaagaaattctcgcaaggt 924205
Score = 60.0 bits (30), Expect = 2e-006
Identities = 66/78 (84%)
Strand = Plus / Minus
Query: 344 agcaagctatcatctgcgttttctggtactcaggataagtgtgcagcttgccagaaaaca 403
||||||||||| || || || ||||| ||||| ||||| |||||||| ||||| |||||
Sbjct: 923962 agcaagctatcttcagcattctctggaactcaagataaatgtgcagcctgccaaaaaact 923903
Query: 404 gtgtacccgctggagaag 421
|||||||| ||||||||
Sbjct: 923902 gtgtacccattggagaag 923885
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 184 bits (93), Expect = 6e-044
Identities = 120/129 (93%)
Strand = Plus / Minus
Query: 74 ttcaccggcacgcaggacaagtgcgcggagtgcgacaagaccgtccacttcatcgacctc 133
|||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||
Sbjct: 12119913 ttcaccggcacgcaggacaagtgcaaggcgtgcgacaagaccgtccatttcatcgacctc 12119854
Query: 134 ctcacggccgacggcgtcacctaccataagacatgcttcaagtgcagccactgcaaaggg 193
||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 12119853 ctcaccgccgacggcgtctcctaccacaagacatgcttcaagtgcagccactgcaagggg 12119794
Query: 194 atcctctcg 202
| |||||||
Sbjct: 12119793 accctctcg 12119785
Score = 155 bits (78), Expect = 5e-035
Identities = 138/158 (87%)
Strand = Plus / Minus
Query: 425 actctggaaggcgagtcctaccacaagagctgcttcaagtgctcgcacgggggctgcatc 484
|||||||| || ||||| ||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 12118850 actctggagggtgagtcttaccacaagagttgcttcaagtgctcgcatgggggctgcatc 12118791
Query: 485 ctcaccacctcctcctacgccgcgctcaacggcgttctgtactgcaagatccacttcgcg 544
|| || || || |||||||| ||||||||||| | || |||||||||||||| ||| ||
Sbjct: 12118790 ctgacgacgtcttcctacgcggcgctcaacgggatcctctactgcaagatccatttctcg 12118731
Query: 545 cagctgttcatggagaaggggagctacagccacatgat 582
|||||||||| ||||||||| ||||||| |||| ||||
Sbjct: 12118730 cagctgttcaaggagaagggcagctacaaccacttgat 12118693
Score = 101 bits (51), Expect = 7e-019
Identities = 90/103 (87%)
Strand = Plus / Minus
Query: 202 gatgtgcagctactcttccatggacggtgtgctgtactgcaagacccacttcgagcagct 261
|||||| | ||||||||| ||||| ||||| |||||||||||||| ||||| ||||||||
Sbjct: 12119682 gatgtgtaactactcttcgatggatggtgtcctgtactgcaagacgcactttgagcagct 12119623
Query: 262 cttcaaggagaccgggagcttctccaagaacttcacgccaggt 304
|||||| ||||| ||||||||||| ||||| ||| ||| ||||
Sbjct: 12119622 cttcaaagagacggggagcttctcaaagaaattctcgcaaggt 12119580
Score = 60.0 bits (30), Expect = 2e-006
Identities = 66/78 (84%)
Strand = Plus / Minus
Query: 344 agcaagctatcatctgcgttttctggtactcaggataagtgtgcagcttgccagaaaaca 403
||||||||||| || || || ||||| ||||| ||||| |||||||| ||||| |||||
Sbjct: 12119337 agcaagctatcttcagcattctctggaactcaagataaatgtgcagcctgccaaaaaact 12119278
Query: 404 gtgtacccgctggagaag 421
|||||||| ||||||||
Sbjct: 12119277 gtgtacccattggagaag 12119260
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 184 bits (93), Expect = 6e-044
Identities = 120/129 (93%)
Strand = Plus / Minus
Query: 74 ttcaccggcacgcaggacaagtgcgcggagtgcgacaagaccgtccacttcatcgacctc 133
|||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||
Sbjct: 25572977 ttcaccggcacgcaggacaagtgcaaggcgtgcgacaagaccgtccatttcatcgacctc 25572918
Query: 134 ctcacggccgacggcgtcacctaccataagacatgcttcaagtgcagccactgcaaaggg 193
||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 25572917 ctcaccgccgacggcgtctcctaccacaagacatgcttcaagtgcagccactgcaagggg 25572858
Query: 194 atcctctcg 202
| |||||||
Sbjct: 25572857 accctctcg 25572849
Score = 155 bits (78), Expect = 5e-035
Identities = 138/158 (87%)
Strand = Plus / Minus
Query: 425 actctggaaggcgagtcctaccacaagagctgcttcaagtgctcgcacgggggctgcatc 484
|||||||| || ||||| ||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 25571914 actctggagggtgagtcttaccacaagagttgcttcaagtgctcgcatgggggctgcatc 25571855
Query: 485 ctcaccacctcctcctacgccgcgctcaacggcgttctgtactgcaagatccacttcgcg 544
|| || || || |||||||| ||||||||||| | || |||||||||||||| ||| ||
Sbjct: 25571854 ctgacgacgtcttcctacgcggcgctcaacgggatcctctactgcaagatccatttctcg 25571795
Query: 545 cagctgttcatggagaaggggagctacagccacatgat 582
|||||||||| ||||||||| ||||||| |||| ||||
Sbjct: 25571794 cagctgttcaaggagaagggcagctacaaccacttgat 25571757
Score = 101 bits (51), Expect = 7e-019
Identities = 90/103 (87%)
Strand = Plus / Minus
Query: 202 gatgtgcagctactcttccatggacggtgtgctgtactgcaagacccacttcgagcagct 261
|||||| | ||||||||| ||||| ||||| |||||||||||||| ||||| ||||||||
Sbjct: 25572746 gatgtgtaactactcttcgatggatggtgtcctgtactgcaagacgcactttgagcagct 25572687
Query: 262 cttcaaggagaccgggagcttctccaagaacttcacgccaggt 304
|||||| ||||| ||||||||||| ||||| ||| ||| ||||
Sbjct: 25572686 cttcaaagagacggggagcttctcaaagaaattctcgcaaggt 25572644
Score = 60.0 bits (30), Expect = 2e-006
Identities = 66/78 (84%)
Strand = Plus / Minus
Query: 344 agcaagctatcatctgcgttttctggtactcaggataagtgtgcagcttgccagaaaaca 403
||||||||||| || || || ||||| ||||| ||||| |||||||| ||||| |||||
Sbjct: 25572401 agcaagctatcttcagcattctctggaactcaagataaatgtgcagcctgccaaaaaact 25572342
Query: 404 gtgtacccgctggagaag 421
|||||||| ||||||||
Sbjct: 25572341 gtgtacccattggagaag 25572324
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 184 bits (93), Expect = 6e-044
Identities = 120/129 (93%)
Strand = Plus / Minus
Query: 74 ttcaccggcacgcaggacaagtgcgcggagtgcgacaagaccgtccacttcatcgacctc 133
|||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||
Sbjct: 25759539 ttcaccggcacgcaggacaagtgcaaggcgtgcgacaagaccgtccatttcatcgacctc 25759480
Query: 134 ctcacggccgacggcgtcacctaccataagacatgcttcaagtgcagccactgcaaaggg 193
||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 25759479 ctcaccgccgacggcgtctcctaccacaagacatgcttcaagtgcagccactgcaagggg 25759420
Query: 194 atcctctcg 202
| |||||||
Sbjct: 25759419 accctctcg 25759411
Score = 155 bits (78), Expect = 5e-035
Identities = 138/158 (87%)
Strand = Plus / Minus
Query: 425 actctggaaggcgagtcctaccacaagagctgcttcaagtgctcgcacgggggctgcatc 484
|||||||| || ||||| ||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 25758476 actctggagggtgagtcttaccacaagagttgcttcaagtgctcgcatgggggctgcatc 25758417
Query: 485 ctcaccacctcctcctacgccgcgctcaacggcgttctgtactgcaagatccacttcgcg 544
|| || || || |||||||| ||||||||||| | || |||||||||||||| ||| ||
Sbjct: 25758416 ctgacgacgtcttcctacgcggcgctcaacgggatcctctactgcaagatccatttctcg 25758357
Query: 545 cagctgttcatggagaaggggagctacagccacatgat 582
|||||||||| ||||||||| ||||||| |||| ||||
Sbjct: 25758356 cagctgttcaaggagaagggcagctacaaccacttgat 25758319
Score = 101 bits (51), Expect = 7e-019
Identities = 90/103 (87%)
Strand = Plus / Minus
Query: 202 gatgtgcagctactcttccatggacggtgtgctgtactgcaagacccacttcgagcagct 261
|||||| | ||||||||| ||||| ||||| |||||||||||||| ||||| ||||||||
Sbjct: 25759308 gatgtgtaactactcttcgatggatggtgtcctgtactgcaagacgcactttgagcagct 25759249
Query: 262 cttcaaggagaccgggagcttctccaagaacttcacgccaggt 304
|||||| ||||| ||||||||||| ||||| ||| ||| ||||
Sbjct: 25759248 cttcaaagagacggggagcttctcaaagaaattctcgcaaggt 25759206
Score = 60.0 bits (30), Expect = 2e-006
Identities = 66/78 (84%)
Strand = Plus / Minus
Query: 344 agcaagctatcatctgcgttttctggtactcaggataagtgtgcagcttgccagaaaaca 403
||||||||||| || || || ||||| ||||| ||||| |||||||| ||||| |||||
Sbjct: 25758963 agcaagctatcttcagcattctctggaactcaagataaatgtgcagcctgccaaaaaact 25758904
Query: 404 gtgtacccgctggagaag 421
|||||||| ||||||||
Sbjct: 25758903 gtgtacccattggagaag 25758886
>gb|AY873059.1|AY873059 04ET3_387_d_005_000_017D01 Oryza sativa (japonica cultivar-group)
transposon insertional mutants Oryza sativa (japonica
cultivar-group) genomic clone
04ET3_387_d_005_000_017D01, DNA sequence
Length = 627
Score = 91.7 bits (46), Expect = 7e-016
Identities = 70/78 (89%)
Strand = Plus / Minus
Query: 526 ctgcaagatccacttcgcgcagctgttcatggagaaggggagctacagccacatgatgaa 585
||||||||| ||||||| |||||||||||||||||| |||||||||| ||||||| |||
Sbjct: 613 ctgcaagatacacttcgggcagctgttcatggagaaagggagctacaatcacatgaagaa 554
Query: 586 gaagagcccgtcccagga 603
||||||| |||||||||
Sbjct: 553 gaagagcgagtcccagga 536
>gb|BP185090.1|BP185090 BP185090 pNS rice panicle cDNA, flowering stage Oryza sativa
(japonica cultivar-group) cDNA clone pNS-YP32, mRNA
sequence
Length = 595
Score = 91.7 bits (46), Expect = 7e-016
Identities = 100/118 (84%)
Strand = Plus / Plus
Query: 153 cctaccataagacatgcttcaagtgcagccactgcaaagggatcctctcgatgtgcagct 212
||||||| ||| | ||||||| ||||||||||||||||| | || |||||||||||||
Sbjct: 146 cctaccacaagtcttgcttcagatgcagccactgcaaaggcacactttcgatgtgcagct 205
Query: 213 actcttccatggacggtgtgctgtactgcaagacccacttcgagcagctcttcaagga 270
| || |||||||| || || || |||||||||||||| || |||||||| ||||||||
Sbjct: 206 attcgtccatggatggggttctttactgcaagacccattttgagcagctattcaagga 263
Score = 60.0 bits (30), Expect = 2e-006
Identities = 168/214 (78%)
Strand = Plus / Plus
Query: 341 cccagcaagctatcatctgcgttttctggtactcaggataagtgtgcagcttgccagaaa 400
||||||||||| || |||| ||| | ||| || ||||| |||||| | || ||| ||||
Sbjct: 328 cccagcaagctgtcctctgtgttctgtggaacccaggacaagtgtactgcctgcaagaag 387
Query: 401 acagtgtacccgctggagaagttgactctggaaggcgagtcctaccacaagagctgcttc 460
|| ||||| || |||||||| |||| |||| || |||| ||||||| || |||||||
Sbjct: 388 actgtgtatccattggagaagatgaccatggagggtgagtgttaccacaggacctgcttc 447
Query: 461 aagtgctcgcacgggggctgcatcctcaccacctcctcctacgccgcgctcaacggcgtt 520
|||||| | || || |||||| | || || | | ||||||||||| ||| |||||| |
Sbjct: 448 aagtgcgcccatggcggctgccttctgacgaacgcctcctacgcctcgcacaacgggatc 507
Query: 521 ctgtactgcaagatccacttcgcgcagctgttca 554
|| |||||| ||| ||||||| |||||||||||
Sbjct: 508 ctctactgccagaaccacttctggcagctgttca 541
>dbj|AK072520.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023131K23, full
insert sequence
Length = 1267
Score = 91.7 bits (46), Expect = 7e-016
Identities = 100/118 (84%)
Strand = Plus / Plus
Query: 153 cctaccataagacatgcttcaagtgcagccactgcaaagggatcctctcgatgtgcagct 212
||||||| ||| | ||||||| ||||||||||||||||| | || |||||||||||||
Sbjct: 284 cctaccacaagtcttgcttcagatgcagccactgcaaaggcacactttcgatgtgcagct 343
Query: 213 actcttccatggacggtgtgctgtactgcaagacccacttcgagcagctcttcaagga 270
| || |||||||| || || || |||||||||||||| || |||||||| ||||||||
Sbjct: 344 attcgtccatggatggggttctttactgcaagacccattttgagcagctattcaagga 401
Score = 60.0 bits (30), Expect = 2e-006
Identities = 168/214 (78%)
Strand = Plus / Plus
Query: 341 cccagcaagctatcatctgcgttttctggtactcaggataagtgtgcagcttgccagaaa 400
||||||||||| || |||| ||| | ||| || ||||| |||||| | || ||| ||||
Sbjct: 466 cccagcaagctgtcctctgtgttctgtggaacccaggacaagtgtactgcctgcaagaag 525
Query: 401 acagtgtacccgctggagaagttgactctggaaggcgagtcctaccacaagagctgcttc 460
|| ||||| || |||||||| |||| |||| || |||| ||||||| || |||||||
Sbjct: 526 actgtgtatccattggagaagatgaccatggagggtgagtgttaccacaggacctgcttc 585
Query: 461 aagtgctcgcacgggggctgcatcctcaccacctcctcctacgccgcgctcaacggcgtt 520
|||||| | || || |||||| | || || | | ||||||||||| ||| |||||| |
Sbjct: 586 aagtgcgcccatggcggctgccttctgacgaacgcctcctacgcctcgcacaacgggatc 645
Query: 521 ctgtactgcaagatccacttcgcgcagctgttca 554
|| |||||| ||| ||||||| |||||||||||
Sbjct: 646 ctctactgccagaaccacttctggcagctgttca 679
>ref|NM_197225.1| Oryza sativa (japonica cultivar-group) putative LIM domain protein
(OSJNBb0073N24.9), mRNA
Length = 1040
Score = 91.7 bits (46), Expect = 7e-016
Identities = 100/118 (84%)
Strand = Plus / Plus
Query: 153 cctaccataagacatgcttcaagtgcagccactgcaaagggatcctctcgatgtgcagct 212
||||||| ||| | ||||||| ||||||||||||||||| | || |||||||||||||
Sbjct: 263 cctaccacaagtcttgcttcagatgcagccactgcaaaggcacactttcgatgtgcagct 322
Query: 213 actcttccatggacggtgtgctgtactgcaagacccacttcgagcagctcttcaagga 270
| || |||||||| || || || |||||||||||||| || |||||||| ||||||||
Sbjct: 323 attcgtccatggatggggttctttactgcaagacccattttgagcagctattcaagga 380
Score = 60.0 bits (30), Expect = 2e-006
Identities = 168/214 (78%)
Strand = Plus / Plus
Query: 341 cccagcaagctatcatctgcgttttctggtactcaggataagtgtgcagcttgccagaaa 400
||||||||||| || |||| ||| | ||| || ||||| |||||| | || ||| ||||
Sbjct: 445 cccagcaagctgtcctctgtgttctgtggaacccaggacaagtgtactgcctgcaagaag 504
Query: 401 acagtgtacccgctggagaagttgactctggaaggcgagtcctaccacaagagctgcttc 460
|| ||||| || |||||||| |||| |||| || |||| ||||||| || |||||||
Sbjct: 505 actgtgtatccattggagaagatgaccatggagggtgagtgttaccacaggacctgcttc 564
Query: 461 aagtgctcgcacgggggctgcatcctcaccacctcctcctacgccgcgctcaacggcgtt 520
|||||| | || || |||||| | || || | | ||||||||||| ||| |||||| |
Sbjct: 565 aagtgcgcccatggcggctgccttctgacgaacgcctcctacgcctcgcacaacgggatc 624
Query: 521 ctgtactgcaagatccacttcgcgcagctgttca 554
|| |||||| ||| ||||||| |||||||||||
Sbjct: 625 ctctactgccagaaccacttctggcagctgttca 658
>gb|AU063889.1|AU063889 AU063889 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E1632_1A, mRNA sequence
Length = 463
Score = 77.8 bits (39), Expect = 1e-011
Identities = 100/119 (84%), Gaps = 1/119 (0%)
Strand = Plus / Plus
Query: 153 cctaccataagacatgcttcaagtgcagccactgcaaagggatcctctcgatgtgcagct 212
||||||| ||| | ||||||| ||||||||||||||||| | || |||||||||||||
Sbjct: 260 cctaccacaagtcttgcttcagatgcagccactgcaaaggcacactttcgatgtgcagct 319
Query: 213 actcttccatgga-cggtgtgctgtactgcaagacccacttcgagcagctcttcaagga 270
| || |||||||| || || || |||||||||||||| || |||||||| ||||||||
Sbjct: 320 attcgtccatggatgggggttctttactgcaagacccattttgagcagctattcaagga 378
>gb|C71856.1|C71856 C71856 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E0473_1A, mRNA sequence
Length = 459
Score = 75.8 bits (38), Expect = 4e-011
Identities = 89/105 (84%), Gaps = 1/105 (0%)
Strand = Plus / Plus
Query: 167 tgcttcaagtgcagccactgcaaagggatcctctcgatgtgcagctactcttccatgga- 225
||||||| ||||||||||||||||| | || |||||||||||||| || ||||||||
Sbjct: 285 tgcttcanatgcagccactgcaaaggcacactttcgatgtgcagctattcgtccatggat 344
Query: 226 cggtgtgctgtactgcaagacccacttcgagcagctcttcaagga 270
|| || || |||||||||||||| || |||||||| ||||||||
Sbjct: 345 gggggttctttactgcaagacccattttgagcagctattcaagga 389
>gb|AU063991.1|AU063991 AU063991 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E2911_1A, mRNA sequence
Length = 413
Score = 65.9 bits (33), Expect = 4e-008
Identities = 81/97 (83%)
Strand = Plus / Plus
Query: 153 cctaccataagacatgcttcaagtgcagccactgcaaagggatcctctcgatgtgcagct 212
||||||| ||| | ||||||| ||||||||||||||||| | || |||||||||||||
Sbjct: 260 cctaccacaagtcttgcttcagatgcagccactgcaaaggcacactttcgatgtgcagct 319
Query: 213 actcttccatggacggtgtgctgtactgcaagaccca 249
| || |||||||| || | || ||||||||||||||
Sbjct: 320 attcgtccatggatgggggtctttactgcaagaccca 356
>gb|AC078840.6| Oryza sativa chromosome 10 BAC OSJNBb0073N24 genomic sequence, complete
sequence
Length = 130058
Score = 65.9 bits (33), Expect = 4e-008
Identities = 60/69 (86%)
Strand = Plus / Minus
Query: 202 gatgtgcagctactcttccatggacggtgtgctgtactgcaagacccacttcgagcagct 261
|||||||||||| || |||||||| || || || |||||||||||||| || ||||||||
Sbjct: 44775 gatgtgcagctattcgtccatggatggggttctttactgcaagacccattttgagcagct 44716
Query: 262 cttcaagga 270
||||||||
Sbjct: 44715 attcaagga 44707
Score = 48.1 bits (24), Expect = 0.009
Identities = 90/112 (80%)
Strand = Plus / Minus
Query: 443 taccacaagagctgcttcaagtgctcgcacgggggctgcatcctcaccacctcctcctac 502
||||||| || ||||||||||||| | || || |||||| | || || | | ||||||||
Sbjct: 43940 taccacaggacctgcttcaagtgcgcccatggcggctgccttctgacgaacgcctcctac 43881
Query: 503 gccgcgctcaacggcgttctgtactgcaagatccacttcgcgcagctgttca 554
||| ||| |||||| | || |||||| ||| ||||||| |||||||||||
Sbjct: 43880 gcctcgcacaacgggatcctctactgccagaaccacttctggcagctgttca 43829
>gb|AACV01021892.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg021892, whole
genome shotgun sequence
Length = 87744
Score = 65.9 bits (33), Expect = 4e-008
Identities = 60/69 (86%)
Strand = Plus / Minus
Query: 202 gatgtgcagctactcttccatggacggtgtgctgtactgcaagacccacttcgagcagct 261
|||||||||||| || |||||||| || || || |||||||||||||| || ||||||||
Sbjct: 51203 gatgtgcagctattcgtccatggatggggttctttactgcaagacccattttgagcagct 51144
Query: 262 cttcaagga 270
||||||||
Sbjct: 51143 attcaagga 51135
Score = 48.1 bits (24), Expect = 0.009
Identities = 90/112 (80%)
Strand = Plus / Minus
Query: 443 taccacaagagctgcttcaagtgctcgcacgggggctgcatcctcaccacctcctcctac 502
||||||| || ||||||||||||| | || || |||||| | || || | | ||||||||
Sbjct: 50368 taccacaggacctgcttcaagtgcgcccatggcggctgccttctgacgaacgcctcctac 50309
Query: 503 gccgcgctcaacggcgttctgtactgcaagatccacttcgcgcagctgttca 554
||| ||| |||||| | || |||||| ||| ||||||| |||||||||||
Sbjct: 50308 gcctcgcacaacgggatcctctactgccagaaccacttctggcagctgttca 50257
>ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chromosome 10
Length = 4609300
Score = 65.9 bits (33), Expect = 4e-008
Identities = 60/69 (86%)
Strand = Plus / Minus
Query: 202 gatgtgcagctactcttccatggacggtgtgctgtactgcaagacccacttcgagcagct 261
|||||||||||| || |||||||| || || || |||||||||||||| || ||||||||
Sbjct: 605291 gatgtgcagctattcgtccatggatggggttctttactgcaagacccattttgagcagct 605232
Query: 262 cttcaagga 270
||||||||
Sbjct: 605231 attcaagga 605223
Score = 48.1 bits (24), Expect = 0.009
Identities = 90/112 (80%)
Strand = Plus / Minus
Query: 443 taccacaagagctgcttcaagtgctcgcacgggggctgcatcctcaccacctcctcctac 502
||||||| || ||||||||||||| | || || |||||| | || || | | ||||||||
Sbjct: 604456 taccacaggacctgcttcaagtgcgcccatggcggctgccttctgacgaacgcctcctac 604397
Query: 503 gccgcgctcaacggcgttctgtactgcaagatccacttcgcgcagctgttca 554
||| ||| |||||| | || |||||| ||| ||||||| |||||||||||
Sbjct: 604396 gcctcgcacaacgggatcctctactgccagaaccacttctggcagctgttca 604345
>gb|CH401254.1| Oryza sativa (japonica cultivar-group) chromosome 10 scaffold000091 genomic
scaffold, whole genome shotgun sequence
Length = 10615099
Score = 65.9 bits (33), Expect = 4e-008
Identities = 60/69 (86%)
Strand = Plus / Minus
Query: 202 gatgtgcagctactcttccatggacggtgtgctgtactgcaagacccacttcgagcagct 261
|||||||||||| || |||||||| || || || |||||||||||||| || ||||||||
Sbjct: 6719555 gatgtgcagctattcgtccatggatggggttctttactgcaagacccattttgagcagct 6719496
Query: 262 cttcaagga 270
||||||||
Sbjct: 6719495 attcaagga 6719487
Score = 48.1 bits (24), Expect = 0.009
Identities = 90/112 (80%)
Strand = Plus / Minus
Query: 443 taccacaagagctgcttcaagtgctcgcacgggggctgcatcctcaccacctcctcctac 502
||||||| || ||||||||||||| | || || |||||| | || || | | ||||||||
Sbjct: 6718720 taccacaggacctgcttcaagtgcgcccatggcggctgccttctgacgaacgcctcctac 6718661
Query: 503 gccgcgctcaacggcgttctgtactgcaagatccacttcgcgcagctgttca 554
||| ||| |||||| | || |||||| ||| ||||||| |||||||||||
Sbjct: 6718660 gcctcgcacaacgggatcctctactgccagaaccacttctggcagctgttca 6718609
>gb|CM000147.1| Oryza sativa (japonica cultivar-group) chromosome 10, whole genome shotgun
sequence
Length = 21480893
Score = 65.9 bits (33), Expect = 4e-008
Identities = 60/69 (86%)
Strand = Plus / Minus
Query: 202 gatgtgcagctactcttccatggacggtgtgctgtactgcaagacccacttcgagcagct 261
|||||||||||| || |||||||| || || || |||||||||||||| || ||||||||
Sbjct: 17585349 gatgtgcagctattcgtccatggatggggttctttactgcaagacccattttgagcagct 17585290
Query: 262 cttcaagga 270
||||||||
Sbjct: 17585289 attcaagga 17585281
Score = 48.1 bits (24), Expect = 0.009
Identities = 90/112 (80%)
Strand = Plus / Minus
Query: 443 taccacaagagctgcttcaagtgctcgcacgggggctgcatcctcaccacctcctcctac 502
||||||| || ||||||||||||| | || || |||||| | || || | | ||||||||
Sbjct: 17584514 taccacaggacctgcttcaagtgcgcccatggcggctgccttctgacgaacgcctcctac 17584455
Query: 503 gccgcgctcaacggcgttctgtactgcaagatccacttcgcgcagctgttca 554
||| ||| |||||| | || |||||| ||| ||||||| |||||||||||
Sbjct: 17584454 gcctcgcacaacgggatcctctactgccagaaccacttctggcagctgttca 17584403
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
sequence
Length = 22685906
Score = 65.9 bits (33), Expect = 4e-008
Identities = 60/69 (86%)
Strand = Plus / Minus
Query: 202 gatgtgcagctactcttccatggacggtgtgctgtactgcaagacccacttcgagcagct 261
|||||||||||| || |||||||| || || || |||||||||||||| || ||||||||
Sbjct: 18683497 gatgtgcagctattcgtccatggatggggttctttactgcaagacccattttgagcagct 18683438
Query: 262 cttcaagga 270
||||||||
Sbjct: 18683437 attcaagga 18683429
Score = 48.1 bits (24), Expect = 0.009
Identities = 90/112 (80%)
Strand = Plus / Minus
Query: 443 taccacaagagctgcttcaagtgctcgcacgggggctgcatcctcaccacctcctcctac 502
||||||| || ||||||||||||| | || || |||||| | || || | | ||||||||
Sbjct: 18682662 taccacaggacctgcttcaagtgcgcccatggcggctgccttctgacgaacgcctcctac 18682603
Query: 503 gccgcgctcaacggcgttctgtactgcaagatccacttcgcgcagctgttca 554
||| ||| |||||| | || |||||| ||| ||||||| |||||||||||
Sbjct: 18682602 gcctcgcacaacgggatcctctactgccagaaccacttctggcagctgttca 18682551
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
Length = 22698374
Score = 65.9 bits (33), Expect = 4e-008
Identities = 60/69 (86%)
Strand = Plus / Minus
Query: 202 gatgtgcagctactcttccatggacggtgtgctgtactgcaagacccacttcgagcagct 261
|||||||||||| || |||||||| || || || |||||||||||||| || ||||||||
Sbjct: 18694350 gatgtgcagctattcgtccatggatggggttctttactgcaagacccattttgagcagct 18694291
Query: 262 cttcaagga 270
||||||||
Sbjct: 18694290 attcaagga 18694282
Score = 48.1 bits (24), Expect = 0.009
Identities = 90/112 (80%)
Strand = Plus / Minus
Query: 443 taccacaagagctgcttcaagtgctcgcacgggggctgcatcctcaccacctcctcctac 502
||||||| || ||||||||||||| | || || |||||| | || || | | ||||||||
Sbjct: 18693515 taccacaggacctgcttcaagtgcgcccatggcggctgccttctgacgaacgcctcctac 18693456
Query: 503 gccgcgctcaacggcgttctgtactgcaagatccacttcgcgcagctgttca 554
||| ||| |||||| | || |||||| ||| ||||||| |||||||||||
Sbjct: 18693455 gcctcgcacaacgggatcctctactgccagaaccacttctggcagctgttca 18693404
>gb|AU030413.1|AU030413 AU030413 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E51032_1A, mRNA sequence
Length = 399
Score = 60.0 bits (30), Expect = 2e-006
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 236 tactgcaagacccacttcgagcagctcttcaaggagaccgggagct 281
||||||||| |||| |||||||| || |||||||||||||||||||
Sbjct: 274 tactgcaagccccatttcgagcaactgttcaaggagaccgggagct 319
>gb|AU065317.1|AU065317 AU065317 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E61601_1A, mRNA sequence
Length = 485
Score = 60.0 bits (30), Expect = 2e-006
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 236 tactgcaagacccacttcgagcagctcttcaaggagaccgggagct 281
||||||||| |||| |||||||| || |||||||||||||||||||
Sbjct: 352 tactgcaagccccatttcgagcaactgttcaaggagaccgggagct 397
>gb|CF323532.1|CF323532 HDN--04-B15.g1 OsHDAC1-overexpressing transgenic rice lambda phage
cDNA library II (HDN) Oryza sativa (japonica
cultivar-group) cDNA clone HDN--04-B15, mRNA sequence
Length = 512
Score = 60.0 bits (30), Expect = 2e-006
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 236 tactgcaagacccacttcgagcagctcttcaaggagaccgggagct 281
||||||||| |||| |||||||| || |||||||||||||||||||
Sbjct: 325 tactgcaagccccatttcgagcaactgttcaaggagaccgggagct 370
>gb|CD670811.1|CD670811 OsMR230 5MT resistant rice mutant cDNA library Oryza sativa
(japonica cultivar-group) cDNA, mRNA sequence
Length = 612
Score = 60.0 bits (30), Expect = 2e-006
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 236 tactgcaagacccacttcgagcagctcttcaaggagaccgggagct 281
||||||||| |||| |||||||| || |||||||||||||||||||
Sbjct: 181 tactgcaagccccatttcgagcaactgttcaaggagaccgggagct 226
>gb|CV723028.1|CV723028 root--02-E17.g1 Rice root lambda phage cDNA library (root) Oryza
sativa (japonica cultivar-group) cDNA clone
root--02-E17, mRNA sequence
Length = 482
Score = 60.0 bits (30), Expect = 2e-006
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 236 tactgcaagacccacttcgagcagctcttcaaggagaccgggagct 281
||||||||| |||| |||||||| || |||||||||||||||||||
Sbjct: 255 tactgcaagccccatttcgagcaactgttcaaggagaccgggagct 300
>dbj|AK058507.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-G03, full
insert sequence
Length = 962
Score = 60.0 bits (30), Expect = 2e-006
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 236 tactgcaagacccacttcgagcagctcttcaaggagaccgggagct 281
||||||||| |||| |||||||| || |||||||||||||||||||
Sbjct: 342 tactgcaagccccatttcgagcaactgttcaaggagaccgggagct 387
>gb|AC135205.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1012B02,
complete sequence
Length = 115270
Score = 60.0 bits (30), Expect = 2e-006
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 236 tactgcaagacccacttcgagcagctcttcaaggagaccgggagct 281
||||||||| |||| |||||||| || |||||||||||||||||||
Sbjct: 114583 tactgcaagccccatttcgagcaactgttcaaggagaccgggagct 114628
>gb|AC135208.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1364E02,
complete sequence
Length = 112265
Score = 60.0 bits (30), Expect = 2e-006
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 236 tactgcaagacccacttcgagcagctcttcaaggagaccgggagct 281
||||||||| |||| |||||||| || |||||||||||||||||||
Sbjct: 14085 tactgcaagccccatttcgagcaactgttcaaggagaccgggagct 14130
>gb|AACV01006284.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006284, whole
genome shotgun sequence
Length = 17397
Score = 60.0 bits (30), Expect = 2e-006
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 236 tactgcaagacccacttcgagcagctcttcaaggagaccgggagct 281
||||||||| |||| |||||||| || |||||||||||||||||||
Sbjct: 1205 tactgcaagccccatttcgagcaactgttcaaggagaccgggagct 1250
>ref|NM_187463.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 591
Score = 60.0 bits (30), Expect = 2e-006
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 236 tactgcaagacccacttcgagcagctcttcaaggagaccgggagct 281
||||||||| |||| |||||||| || |||||||||||||||||||
Sbjct: 166 tactgcaagccccatttcgagcaactgttcaaggagaccgggagct 211
>ref|NT_107192.1| Oryza sativa (japonica cultivar-group)
Length = 4781381
Score = 60.0 bits (30), Expect = 2e-006
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 236 tactgcaagacccacttcgagcagctcttcaaggagaccgggagct 281
||||||||| |||| |||||||| || |||||||||||||||||||
Sbjct: 114583 tactgcaagccccatttcgagcaactgttcaaggagaccgggagct 114628
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
scaffold, whole genome shotgun sequence
Length = 13858245
Score = 60.0 bits (30), Expect = 2e-006
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 236 tactgcaagacccacttcgagcagctcttcaaggagaccgggagct 281
||||||||| |||| |||||||| || |||||||||||||||||||
Sbjct: 8727001 tactgcaagccccatttcgagcaactgttcaaggagaccgggagct 8727046
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 60.0 bits (30), Expect = 2e-006
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 236 tactgcaagacccacttcgagcagctcttcaaggagaccgggagct 281
||||||||| |||| |||||||| || |||||||||||||||||||
Sbjct: 8919363 tactgcaagccccatttcgagcaactgttcaaggagaccgggagct 8919408
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 60.0 bits (30), Expect = 2e-006
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 236 tactgcaagacccacttcgagcagctcttcaaggagaccgggagct 281
||||||||| |||| |||||||| || |||||||||||||||||||
Sbjct: 8768767 tactgcaagccccatttcgagcaactgttcaaggagaccgggagct 8768812
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 60.0 bits (30), Expect = 2e-006
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 236 tactgcaagacccacttcgagcagctcttcaaggagaccgggagct 281
||||||||| |||| |||||||| || |||||||||||||||||||
Sbjct: 8770932 tactgcaagccccatttcgagcaactgttcaaggagaccgggagct 8770977
>gb|C72613.1|C72613 C72613 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E1930_1A, mRNA sequence
Length = 396
Score = 52.0 bits (26), Expect = 6e-004
Identities = 81/98 (82%), Gaps = 1/98 (1%)
Strand = Plus / Plus
Query: 153 cctaccataagacatgcttcaagtgcagccactgcaaagggatcctctcgatgtgcagct 212
||||||| ||| | ||||||| ||||||||||||||||| | || |||||||||||||
Sbjct: 258 cctaccacaagtcttgcttcagatgcagccactgcaaaggcacactttcgatgtgcagct 317
Query: 213 actc-ttccatggacggtgtgctgtactgcaagaccca 249
| || |||||||| || | || ||||||||||||||
Sbjct: 318 attcggtccatggatgggggtctttactgcaagaccca 355
>gb|AU029821.1|AU029821 AU029821 Rice panicle (between 3cm to 10cm) Oryza sativa (japonica
cultivar-group) cDNA clone E40588_1A, mRNA sequence
Length = 461
Score = 50.1 bits (25), Expect = 0.002
Identities = 112/141 (79%)
Strand = Plus / Plus
Query: 414 tggagaagttgactctggaaggcgagtcctaccacaagagctgcttcaagtgctcgcacg 473
|||||||| |||| |||| || |||| ||||||| || ||||||||||||| | || |
Sbjct: 63 tggagaagatgaccatggagggtgagtgttaccacaggacctgcttcaagtgcgcccatg 122
Query: 474 ggggctgcatcctcaccacctcctcctacgccgcgctcaacggcgttctgtactgcaaga 533
| |||||| | || || | | ||||||||||| ||| |||||| | || |||||| |||
Sbjct: 123 gcggctgccttctgacgaacgcctcctacgcctcgcacaacgggatcctctactgccaga 182
Query: 534 tccacttcgcgcagctgttca 554
||||||| |||||||||||
Sbjct: 183 accacttctggcagctgttca 203
>gb|AU165380.1|AU165380 AU165380 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E0743, mRNA sequence
Length = 421
Score = 50.1 bits (25), Expect = 0.002
Identities = 112/141 (79%)
Strand = Plus / Plus
Query: 414 tggagaagttgactctggaaggcgagtcctaccacaagagctgcttcaagtgctcgcacg 473
|||||||| |||| |||| || |||| ||||||| || ||||||||||||| | || |
Sbjct: 63 tggagaagatgaccatggagggtgagtgttaccacaggacctgcttcaagtgcgcccatg 122
Query: 474 ggggctgcatcctcaccacctcctcctacgccgcgctcaacggcgttctgtactgcaaga 533
| |||||| | || || | | ||||||||||| ||| |||||| | || |||||| |||
Sbjct: 123 gcggctgccttctgacgaacgcctcctacgcctcgcacaacgggatcctctactgccaga 182
Query: 534 tccacttcgcgcagctgttca 554
||||||| |||||||||||
Sbjct: 183 accacttctggcagctgttca 203
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,295,924
Number of Sequences: 438736
Number of extensions: 1295924
Number of successful extensions: 8029
Number of sequences better than 0.5: 51
Number of HSP's better than 0.5 without gapping: 48
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 7650
Number of HSP's gapped (non-prelim): 358
length of query: 993
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 972
effective length of database: 2,791,206,460
effective search space: 2713052679120
effective search space used: 2713052679120
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)