BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3742548.2.1
(554 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AACV01003510.1| Oryza sativa (japonica cultivar-group) c... 167 8e-039
ref|XM_464378.1| Oryza sativa (japonica cultivar-group), mRNA 167 8e-039
ref|NT_107177.1| Oryza sativa (japonica cultivar-group) 167 8e-039
dbj|AP003990.3| Oryza sativa (japonica cultivar-group) geno... 167 8e-039
dbj|AP004000.3| Oryza sativa (japonica cultivar-group) geno... 167 8e-039
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 167 8e-039
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 167 8e-039
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 167 8e-039
ref|XM_464380.1| Oryza sativa (japonica cultivar-group), mRNA 149 2e-033
dbj|AP002968.2| Oryza sativa (japonica cultivar-group) geno... 115 3e-023
dbj|AP003204.3| Oryza sativa (japonica cultivar-group) geno... 115 3e-023
gb|AACV01001144.1| Oryza sativa (japonica cultivar-group) c... 115 3e-023
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 115 3e-023
ref|NM_193877.1| Oryza sativa (japonica cultivar-group), p... 115 3e-023
ref|NT_079947.2| Oryza sativa (japonica cultivar-group) 115 3e-023
gb|CH401165.1| Oryza sativa (japonica cultivar-group) chrom... 115 3e-023
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 115 3e-023
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 115 3e-023
gb|AQ870215.1|AQ870215 nbeb0036N08f CUGI Rice BAC Library (... 68 5e-009
ref|NT_107233.1| Oryza sativa (japonica cultivar-group) 64 8e-008
dbj|AP003523.3| Oryza sativa (japonica cultivar-group) geno... 64 8e-008
dbj|AP003571.4| Oryza sativa (japonica cultivar-group) geno... 64 8e-008
gb|AACV01014652.1| Oryza sativa (japonica cultivar-group) c... 64 8e-008
gb|AACV01014662.1| Oryza sativa (japonica cultivar-group) c... 64 8e-008
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 64 8e-008
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 64 8e-008
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 64 8e-008
dbj|AP003711.3| Oryza sativa (japonica cultivar-group) geno... 62 3e-007
gb|AACV01014544.1| Oryza sativa (japonica cultivar-group) c... 62 3e-007
gb|CB647244.1|CB647244 OSJNEb10B13.r OSJNEb Oryza sativa (j... 54 8e-005
gb|CB652379.1|CB652379 OSJNEc02D15.r OSJNEc Oryza sativa (j... 54 8e-005
gb|CB652381.1|CB652381 OSJNEc02D16.r OSJNEc Oryza sativa (j... 54 8e-005
gb|CB652383.1|CB652383 OSJNEc02D17.r OSJNEc Oryza sativa (j... 54 8e-005
gb|CB655043.1|CB655043 OSJNEc08B07.r OSJNEc Oryza sativa (j... 54 8e-005
gb|CB659217.1|CB659217 OSJNEc16A08.f OSJNEc Oryza sativa (j... 54 8e-005
gb|CB666330.1|CB666330 OSJNEd13D02.r OSJNEd Oryza sativa (j... 54 8e-005
gb|CB675220.1|CB675220 OSJNEe10M22.r OSJNEe Oryza sativa (j... 54 8e-005
dbj|AK060486.1| Oryza sativa (japonica cultivar-group) cDNA... 54 8e-005
dbj|AK106068.1| Oryza sativa (japonica cultivar-group) cDNA... 54 8e-005
dbj|AK120444.1| Oryza sativa (japonica cultivar-group) cDNA... 54 8e-005
dbj|AK120674.1| Oryza sativa (japonica cultivar-group) cDNA... 54 8e-005
gb|AC096688.4| Oryza sativa chromosome 3 BAC OSJNBa0015N08 ... 54 8e-005
gb|AC092559.4| Oryza sativa chromosome 3 BAC OSJNBb0096M04 ... 54 8e-005
dbj|AP005682.2| Oryza sativa (japonica cultivar-group) geno... 54 8e-005
gb|AACV01008267.1| Oryza sativa (japonica cultivar-group) c... 54 8e-005
gb|AACV01014648.1| Oryza sativa (japonica cultivar-group) c... 54 8e-005
gb|AACV01020440.1| Oryza sativa (japonica cultivar-group) c... 54 8e-005
ref|NM_185174.1| Oryza sativa (japonica cultivar-group), mRNA 54 8e-005
ref|XM_464379.1| Oryza sativa (japonica cultivar-group), mRNA 54 8e-005
ref|NT_079914.2| Oryza sativa (japonica cultivar-group) 54 8e-005
ref|NT_107077.1| Oryza sativa (japonica cultivar-group) 54 8e-005
gb|CH401242.1| Oryza sativa (japonica cultivar-group) chrom... 54 8e-005
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 54 8e-005
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 54 8e-005
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 54 8e-005
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 54 8e-005
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 54 8e-005
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 54 8e-005
gb|AACV01014656.1| Oryza sativa (japonica cultivar-group) c... 52 3e-004
gb|AC084319.5|AC084319 Oryza sativa chromosome 3 BAC OSJNBa... 50 0.001
gb|AACV01007118.1| Oryza sativa (japonica cultivar-group) c... 50 0.001
gb|AACV01014650.1| Oryza sativa (japonica cultivar-group) c... 50 0.001
ref|NT_107174.1| Oryza sativa (japonica cultivar-group) 50 0.001
gb|CH401174.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.001
gb|CB678280.1|CB678280 OSJNEe15P21.r OSJNEe Oryza sativa (j... 48 0.005
dbj|AK064758.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.005
dbj|AK110659.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.005
dbj|AP004811.2| Oryza sativa (japonica cultivar-group) geno... 48 0.005
ref|NT_107237.1| Oryza sativa (japonica cultivar-group) 48 0.005
gb|AACV01001484.1| Oryza sativa (japonica cultivar-group) c... 48 0.005
gb|AACV01009688.1| Oryza sativa (japonica cultivar-group) c... 48 0.005
gb|AACV01013783.1| Oryza sativa (japonica cultivar-group) c... 48 0.005
ref|NT_079926.2| Oryza sativa (japonica cultivar-group) 48 0.005
dbj|AP004233.3| Oryza sativa (japonica cultivar-group) geno... 48 0.005
dbj|AP004232.4| Oryza sativa (japonica cultivar-group) geno... 48 0.005
gb|CH401212.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.005
gb|CH401189.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.005
gb|CH401166.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.005
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.005
emb|AL731641.4| Oryza sativa (japonica cultivar-group) chro... 48 0.005
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 48 0.005
gb|AQ327456.1|AQ327456 nbxb0041I07r CUGI Rice BAC Library O... 46 0.020
gb|AU163743.1|AU163743 AU163743 Rice panicle at ripening st... 46 0.020
gb|AU174799.1|AU174799 AU174799 Rice cDNA from leaf Oryza s... 46 0.020
gb|CB647739.1|CB647739 OSJNEb10M18.r OSJNEb Oryza sativa (j... 46 0.020
gb|CB653025.1|CB653025 OSJNEc03K11.r OSJNEc Oryza sativa (j... 46 0.020
gb|CB673486.1|CB673486 OSJNEe08A12.r OSJNEe Oryza sativa (j... 46 0.020
gb|AC108505.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.020
dbj|AP004066.2| Oryza sativa (japonica cultivar-group) geno... 46 0.020
ref|NT_079878.2| Oryza sativa (japonica cultivar-group) 46 0.020
dbj|AP004684.3| Oryza sativa (japonica cultivar-group) geno... 46 0.020
dbj|AP004688.3| Oryza sativa (japonica cultivar-group) geno... 46 0.020
gb|AC112160.3| Oryza sativa (japonica cultivar-group) chrom... 46 0.020
gb|AACV01003497.1| Oryza sativa (japonica cultivar-group) c... 46 0.020
gb|AACV01012465.1| Oryza sativa (japonica cultivar-group) c... 46 0.020
gb|AACV01012893.1| Oryza sativa (japonica cultivar-group) c... 46 0.020
gb|AACV01014067.1| Oryza sativa (japonica cultivar-group) c... 46 0.020
gb|AACV01014081.1| Oryza sativa (japonica cultivar-group) c... 46 0.020
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 46 0.020
ref|NT_107214.1| Oryza sativa (japonica cultivar-group) 46 0.020
dbj|AP003446.3| Oryza sativa (japonica cultivar-group) geno... 46 0.020
gb|CH401214.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.020
gb|CH401209.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.020
gb|CH401206.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.020
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.020
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 46 0.020
dbj|AP004820.1| Oryza sativa (japonica cultivar-group) chro... 44 0.079
gb|AF488521.1| Oryza sativa Cyt-P450 monooxygenase (PM-I) m... 44 0.079
gb|AF488522.1| Oryza sativa Cyt-P450 monooxygenase (PM-II) ... 44 0.079
dbj|AK101003.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.079
dbj|AK102040.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.079
dbj|AK105571.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.079
dbj|AK110565.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.079
dbj|AP005245.3| Oryza sativa (japonica cultivar-group) geno... 44 0.079
dbj|AP005254.3| Oryza sativa (japonica cultivar-group) geno... 44 0.079
dbj|AP005816.3| Oryza sativa (japonica cultivar-group) geno... 44 0.079
dbj|AP005114.3| Oryza sativa (japonica cultivar-group) geno... 44 0.079
dbj|AP005069.2| Oryza sativa (japonica cultivar-group) geno... 44 0.079
dbj|AP005308.3| Oryza sativa (japonica cultivar-group) geno... 44 0.079
dbj|AP005575.3| Oryza sativa (japonica cultivar-group) geno... 44 0.079
gb|AACV01004739.1| Oryza sativa (japonica cultivar-group) c... 44 0.079
gb|AACV01018823.1| Oryza sativa (japonica cultivar-group) c... 44 0.079
gb|AACV01018826.1| Oryza sativa (japonica cultivar-group) c... 44 0.079
gb|AACV01020855.1| Oryza sativa (japonica cultivar-group) c... 44 0.079
ref|XM_465837.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.079
ref|XM_466362.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.079
ref|XM_466363.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.079
ref|XM_483259.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.079
ref|XM_483266.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.079
ref|NT_107084.1| Oryza sativa (japonica cultivar-group) 44 0.079
ref|NT_107179.1| Oryza sativa (japonica cultivar-group) 44 0.079
ref|NT_107180.1| Oryza sativa (japonica cultivar-group) 44 0.079
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 44 0.079
gb|CH401245.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.079
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.079
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.079
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.079
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.079
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 44 0.079
gb|CB655578.1|CB655578 OSJNEc09C08.r OSJNEc Oryza sativa (j... 42 0.31
gb|CB660020.1|CB660020 OSJNEd01G23.r OSJNEd Oryza sativa (j... 42 0.31
gb|CB672642.1|CB672642 OSJNEe06M10.r OSJNEe Oryza sativa (j... 42 0.31
gb|CB672722.1|CB672722 OSJNEe06O08.r OSJNEe Oryza sativa (j... 42 0.31
gb|CF325898.1|CF325898 JMT1--04-I12.g1 AtJMT-overexpressing... 42 0.31
dbj|AP004882.1| Oryza sativa (japonica cultivar-group) chro... 42 0.31
dbj|AP004120.3| Oryza sativa (japonica cultivar-group) geno... 42 0.31
dbj|AP005691.3| Oryza sativa (japonica cultivar-group) geno... 42 0.31
gb|AACV01005636.1| Oryza sativa (japonica cultivar-group) c... 42 0.31
gb|AACV01014657.1| Oryza sativa (japonica cultivar-group) c... 42 0.31
ref|NT_107182.1| Oryza sativa (japonica cultivar-group) 42 0.31
>gb|AACV01003510.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg003510, whole
genome shotgun sequence
Length = 18403
Score = 167 bits (84), Expect = 8e-039
Identities = 129/144 (89%)
Strand = Plus / Plus
Query: 270 ccctcccggcaaactccagtcgaagtggaacagcaacgcggcgagcgcgatctcgatatg 329
||||||||||| |||||||||||||||||||||| |||||||||||||| ||||| ||
Sbjct: 10153 ccctcccggcagcctccagtcgaagtggaacagcagcgcggcgagcgcgagctcgacgtg 10212
Query: 330 agccagcccgaacgtcatgccggggcagatccgccgcccggcaccgaacggtatgaactc 389
||||||||||||| ||||||||||||||||| || |||||| |||||||| |||| |||
Sbjct: 10213 cgccagcccgaacgccatgccggggcagatcctcctcccggcgccgaacgggatgagctc 10272
Query: 390 gaagtctgcccccttgaagtccct 413
|||||| |||||| ||||||||||
Sbjct: 10273 gaagtccgcccccctgaagtccct 10296
Score = 141 bits (71), Expect = 5e-031
Identities = 117/131 (89%), Gaps = 1/131 (0%)
Strand = Plus / Plus
Query: 283 ctccagtcgaagtggaacagcaacgcggcgagcgcgatctcgatatgagccagcccgaac 342
|||||||||||||||||||||| |||||||||||||| ||||| || |||||||||||
Sbjct: 5695 ctccagtcgaagtggaacagcagcgcggcgagcgcgagctcgacgtgcaccagcccgaac 5754
Query: 343 gtcatgccggggcagatccgccgcccggcaccgaacggtatgaactcgaagtctgccccc 402
| |||||||||||| |||||||| ||||| |||||||| |||| ||||||||| ||||||
Sbjct: 5755 gccatgccggggcacatccgccggccggcgccgaacgggatgagctcgaagtc-gccccc 5813
Query: 403 ttgaagtccct 413
||||||||||
Sbjct: 5814 ctgaagtccct 5824
Score = 87.7 bits (44), Expect = 6e-015
Identities = 65/72 (90%)
Strand = Plus / Plus
Query: 466 gccgggtccctgccgatcgcccacgcgttcacgatcaccgtgatgcccgccggcacgtcg 525
|||| ||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 5880 gccgtgtcccggccgatcgcccacgcgttcacgagcaccgtggcgcccgccggcacgtcg 5939
Query: 526 tacccgagcacc 537
| |||||||||
Sbjct: 5940 tggccgagcacc 5951
Score = 83.8 bits (42), Expect = 9e-014
Identities = 72/82 (87%)
Strand = Plus / Plus
Query: 466 gccgggtccctgccgatcgcccacgcgttcacgatcaccgtgatgcccgccggcacgtcg 525
|||| ||||| ||||||||||||||||||||||| |||| | |||| ||||||||||||
Sbjct: 10352 gccgcgtcccggccgatcgcccacgcgttcacgagcaccatcgtgccggccggcacgtcg 10411
Query: 526 tacccgagcacctggcacgcgc 547
|| |||| ||||| ||||||||
Sbjct: 10412 tagccgaacaccttgcacgcgc 10433
Score = 54.0 bits (27), Expect = 8e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 470 ggtccctgccgatcgcccacgcgttcacgatcacc 504
||||||| || ||||||||||||||||||||||||
Sbjct: 8143 ggtccctaccaatcgcccacgcgttcacgatcacc 8177
Score = 42.1 bits (21), Expect = 0.31
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 331 gccagcccgaacgtcatgccggggcagatccgccgcccggcaccgaacggtatgaactcg 390
|||| |||||| || ||||| ||||| |||| || || || || |||||||||||||||
Sbjct: 8004 gccatcccgaatgtgatgccagggcatatccttcgtccagctccaaacggtatgaactcg 8063
Query: 391 aagtc 395
|||||
Sbjct: 8064 aagtc 8068
>ref|XM_464378.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1530
Score = 167 bits (84), Expect = 8e-039
Identities = 129/144 (89%)
Strand = Plus / Minus
Query: 270 ccctcccggcaaactccagtcgaagtggaacagcaacgcggcgagcgcgatctcgatatg 329
||||||||||| |||||||||||||||||||||| |||||||||||||| ||||| ||
Sbjct: 1422 ccctcccggcagcctccagtcgaagtggaacagcagcgcggcgagcgcgagctcgacgtg 1363
Query: 330 agccagcccgaacgtcatgccggggcagatccgccgcccggcaccgaacggtatgaactc 389
||||||||||||| ||||||||||||||||| || |||||| |||||||| |||| |||
Sbjct: 1362 cgccagcccgaacgccatgccggggcagatcctcctcccggcgccgaacgggatgagctc 1303
Query: 390 gaagtctgcccccttgaagtccct 413
|||||| |||||| ||||||||||
Sbjct: 1302 gaagtccgcccccctgaagtccct 1279
Score = 83.8 bits (42), Expect = 9e-014
Identities = 72/82 (87%)
Strand = Plus / Minus
Query: 466 gccgggtccctgccgatcgcccacgcgttcacgatcaccgtgatgcccgccggcacgtcg 525
|||| ||||| ||||||||||||||||||||||| |||| | |||| ||||||||||||
Sbjct: 1223 gccgcgtcccggccgatcgcccacgcgttcacgagcaccatcgtgccggccggcacgtcg 1164
Query: 526 tacccgagcacctggcacgcgc 547
|| |||| ||||| ||||||||
Sbjct: 1163 tagccgaacaccttgcacgcgc 1142
>ref|NT_107177.1| Oryza sativa (japonica cultivar-group)
Length = 1341590
Score = 167 bits (84), Expect = 8e-039
Identities = 129/144 (89%)
Strand = Plus / Minus
Query: 270 ccctcccggcaaactccagtcgaagtggaacagcaacgcggcgagcgcgatctcgatatg 329
||||||||||| |||||||||||||||||||||| |||||||||||||| ||||| ||
Sbjct: 197816 ccctcccggcagcctccagtcgaagtggaacagcagcgcggcgagcgcgagctcgacgtg 197757
Query: 330 agccagcccgaacgtcatgccggggcagatccgccgcccggcaccgaacggtatgaactc 389
||||||||||||| ||||||||||||||||| || |||||| |||||||| |||| |||
Sbjct: 197756 cgccagcccgaacgccatgccggggcagatcctcctcccggcgccgaacgggatgagctc 197697
Query: 390 gaagtctgcccccttgaagtccct 413
|||||| |||||| ||||||||||
Sbjct: 197696 gaagtccgcccccctgaagtccct 197673
Score = 149 bits (75), Expect = 2e-033
Identities = 117/131 (89%)
Strand = Plus / Minus
Query: 283 ctccagtcgaagtggaacagcaacgcggcgagcgcgatctcgatatgagccagcccgaac 342
|||||||||||||||||||||| |||||||||||||| ||||| || |||||||||||
Sbjct: 202272 ctccagtcgaagtggaacagcagcgcggcgagcgcgagctcgacgtgcaccagcccgaac 202213
Query: 343 gtcatgccggggcagatccgccgcccggcaccgaacggtatgaactcgaagtctgccccc 402
| |||||||||||| |||||||| ||||| |||||||| |||| ||||||||| ||||||
Sbjct: 202212 gccatgccggggcacatccgccggccggcgccgaacgggatgagctcgaagtccgccccc 202153
Query: 403 ttgaagtccct 413
||||||||||
Sbjct: 202152 ctgaagtccct 202142
Score = 87.7 bits (44), Expect = 6e-015
Identities = 65/72 (90%)
Strand = Plus / Minus
Query: 466 gccgggtccctgccgatcgcccacgcgttcacgatcaccgtgatgcccgccggcacgtcg 525
|||| ||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 202086 gccgtgtcccggccgatcgcccacgcgttcacgagcaccgtggcgcccgccggcacgtcg 202027
Query: 526 tacccgagcacc 537
| |||||||||
Sbjct: 202026 tggccgagcacc 202015
Score = 83.8 bits (42), Expect = 9e-014
Identities = 72/82 (87%)
Strand = Plus / Minus
Query: 466 gccgggtccctgccgatcgcccacgcgttcacgatcaccgtgatgcccgccggcacgtcg 525
|||| ||||| ||||||||||||||||||||||| |||| | |||| ||||||||||||
Sbjct: 197617 gccgcgtcccggccgatcgcccacgcgttcacgagcaccatcgtgccggccggcacgtcg 197558
Query: 526 tacccgagcacctggcacgcgc 547
|| |||| ||||| ||||||||
Sbjct: 197557 tagccgaacaccttgcacgcgc 197536
Score = 54.0 bits (27), Expect = 8e-005
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 470 ggtccctgccgatcgcccacgcgttcacgatcacc 504
||||||| || ||||||||||||||||||||||||
Sbjct: 199824 ggtccctaccaatcgcccacgcgttcacgatcacc 199790
Score = 46.1 bits (23), Expect = 0.020
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 285 ccagtcgaagtggaacagcaacgcggcgagcgcga 319
|||||| |||||| ||||||| |||||||||||||
Sbjct: 93245 ccagtcaaagtggtacagcaaagcggcgagcgcga 93279
Score = 42.1 bits (21), Expect = 0.31
Identities = 54/65 (83%)
Strand = Plus / Minus
Query: 331 gccagcccgaacgtcatgccggggcagatccgccgcccggcaccgaacggtatgaactcg 390
|||| |||||| || ||||| ||||| |||| || || || || |||||||||||||||
Sbjct: 199963 gccatcccgaatgtgatgccagggcatatccttcgtccagctccaaacggtatgaactcg 199904
Query: 391 aagtc 395
|||||
Sbjct: 199903 aagtc 199899
>dbj|AP003990.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1073_F05
Length = 124252
Score = 167 bits (84), Expect = 8e-039
Identities = 129/144 (89%)
Strand = Plus / Minus
Query: 270 ccctcccggcaaactccagtcgaagtggaacagcaacgcggcgagcgcgatctcgatatg 329
||||||||||| |||||||||||||||||||||| |||||||||||||| ||||| ||
Sbjct: 67903 ccctcccggcagcctccagtcgaagtggaacagcagcgcggcgagcgcgagctcgacgtg 67844
Query: 330 agccagcccgaacgtcatgccggggcagatccgccgcccggcaccgaacggtatgaactc 389
||||||||||||| ||||||||||||||||| || |||||| |||||||| |||| |||
Sbjct: 67843 cgccagcccgaacgccatgccggggcagatcctcctcccggcgccgaacgggatgagctc 67784
Query: 390 gaagtctgcccccttgaagtccct 413
|||||| |||||| ||||||||||
Sbjct: 67783 gaagtccgcccccctgaagtccct 67760
Score = 149 bits (75), Expect = 2e-033
Identities = 117/131 (89%)
Strand = Plus / Minus
Query: 283 ctccagtcgaagtggaacagcaacgcggcgagcgcgatctcgatatgagccagcccgaac 342
|||||||||||||||||||||| |||||||||||||| ||||| || |||||||||||
Sbjct: 72359 ctccagtcgaagtggaacagcagcgcggcgagcgcgagctcgacgtgcaccagcccgaac 72300
Query: 343 gtcatgccggggcagatccgccgcccggcaccgaacggtatgaactcgaagtctgccccc 402
| |||||||||||| |||||||| ||||| |||||||| |||| ||||||||| ||||||
Sbjct: 72299 gccatgccggggcacatccgccggccggcgccgaacgggatgagctcgaagtccgccccc 72240
Query: 403 ttgaagtccct 413
||||||||||
Sbjct: 72239 ctgaagtccct 72229
Score = 87.7 bits (44), Expect = 6e-015
Identities = 65/72 (90%)
Strand = Plus / Minus
Query: 466 gccgggtccctgccgatcgcccacgcgttcacgatcaccgtgatgcccgccggcacgtcg 525
|||| ||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 72173 gccgtgtcccggccgatcgcccacgcgttcacgagcaccgtggcgcccgccggcacgtcg 72114
Query: 526 tacccgagcacc 537
| |||||||||
Sbjct: 72113 tggccgagcacc 72102
Score = 83.8 bits (42), Expect = 9e-014
Identities = 72/82 (87%)
Strand = Plus / Minus
Query: 466 gccgggtccctgccgatcgcccacgcgttcacgatcaccgtgatgcccgccggcacgtcg 525
|||| ||||| ||||||||||||||||||||||| |||| | |||| ||||||||||||
Sbjct: 67704 gccgcgtcccggccgatcgcccacgcgttcacgagcaccatcgtgccggccggcacgtcg 67645
Query: 526 tacccgagcacctggcacgcgc 547
|| |||| ||||| ||||||||
Sbjct: 67644 tagccgaacaccttgcacgcgc 67623
Score = 54.0 bits (27), Expect = 8e-005
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 470 ggtccctgccgatcgcccacgcgttcacgatcacc 504
||||||| || ||||||||||||||||||||||||
Sbjct: 69911 ggtccctaccaatcgcccacgcgttcacgatcacc 69877
Score = 42.1 bits (21), Expect = 0.31
Identities = 54/65 (83%)
Strand = Plus / Minus
Query: 331 gccagcccgaacgtcatgccggggcagatccgccgcccggcaccgaacggtatgaactcg 390
|||| |||||| || ||||| ||||| |||| || || || || |||||||||||||||
Sbjct: 70050 gccatcccgaatgtgatgccagggcatatccttcgtccagctccaaacggtatgaactcg 69991
Query: 391 aagtc 395
|||||
Sbjct: 69990 aagtc 69986
>dbj|AP004000.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1115_B01
Length = 129329
Score = 167 bits (84), Expect = 8e-039
Identities = 129/144 (89%)
Strand = Plus / Minus
Query: 270 ccctcccggcaaactccagtcgaagtggaacagcaacgcggcgagcgcgatctcgatatg 329
||||||||||| |||||||||||||||||||||| |||||||||||||| ||||| ||
Sbjct: 106334 ccctcccggcagcctccagtcgaagtggaacagcagcgcggcgagcgcgagctcgacgtg 106275
Query: 330 agccagcccgaacgtcatgccggggcagatccgccgcccggcaccgaacggtatgaactc 389
||||||||||||| ||||||||||||||||| || |||||| |||||||| |||| |||
Sbjct: 106274 cgccagcccgaacgccatgccggggcagatcctcctcccggcgccgaacgggatgagctc 106215
Query: 390 gaagtctgcccccttgaagtccct 413
|||||| |||||| ||||||||||
Sbjct: 106214 gaagtccgcccccctgaagtccct 106191
Score = 149 bits (75), Expect = 2e-033
Identities = 117/131 (89%)
Strand = Plus / Minus
Query: 283 ctccagtcgaagtggaacagcaacgcggcgagcgcgatctcgatatgagccagcccgaac 342
|||||||||||||||||||||| |||||||||||||| ||||| || |||||||||||
Sbjct: 110790 ctccagtcgaagtggaacagcagcgcggcgagcgcgagctcgacgtgcaccagcccgaac 110731
Query: 343 gtcatgccggggcagatccgccgcccggcaccgaacggtatgaactcgaagtctgccccc 402
| |||||||||||| |||||||| ||||| |||||||| |||| ||||||||| ||||||
Sbjct: 110730 gccatgccggggcacatccgccggccggcgccgaacgggatgagctcgaagtccgccccc 110671
Query: 403 ttgaagtccct 413
||||||||||
Sbjct: 110670 ctgaagtccct 110660
Score = 87.7 bits (44), Expect = 6e-015
Identities = 65/72 (90%)
Strand = Plus / Minus
Query: 466 gccgggtccctgccgatcgcccacgcgttcacgatcaccgtgatgcccgccggcacgtcg 525
|||| ||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 110604 gccgtgtcccggccgatcgcccacgcgttcacgagcaccgtggcgcccgccggcacgtcg 110545
Query: 526 tacccgagcacc 537
| |||||||||
Sbjct: 110544 tggccgagcacc 110533
Score = 83.8 bits (42), Expect = 9e-014
Identities = 72/82 (87%)
Strand = Plus / Minus
Query: 466 gccgggtccctgccgatcgcccacgcgttcacgatcaccgtgatgcccgccggcacgtcg 525
|||| ||||| ||||||||||||||||||||||| |||| | |||| ||||||||||||
Sbjct: 106135 gccgcgtcccggccgatcgcccacgcgttcacgagcaccatcgtgccggccggcacgtcg 106076
Query: 526 tacccgagcacctggcacgcgc 547
|| |||| ||||| ||||||||
Sbjct: 106075 tagccgaacaccttgcacgcgc 106054
Score = 54.0 bits (27), Expect = 8e-005
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 470 ggtccctgccgatcgcccacgcgttcacgatcacc 504
||||||| || ||||||||||||||||||||||||
Sbjct: 108342 ggtccctaccaatcgcccacgcgttcacgatcacc 108308
Score = 46.1 bits (23), Expect = 0.020
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 285 ccagtcgaagtggaacagcaacgcggcgagcgcga 319
|||||| |||||| ||||||| |||||||||||||
Sbjct: 1763 ccagtcaaagtggtacagcaaagcggcgagcgcga 1797
Score = 42.1 bits (21), Expect = 0.31
Identities = 54/65 (83%)
Strand = Plus / Minus
Query: 331 gccagcccgaacgtcatgccggggcagatccgccgcccggcaccgaacggtatgaactcg 390
|||| |||||| || ||||| ||||| |||| || || || || |||||||||||||||
Sbjct: 108481 gccatcccgaatgtgatgccagggcatatccttcgtccagctccaaacggtatgaactcg 108422
Query: 391 aagtc 395
|||||
Sbjct: 108421 aagtc 108417
>gb|CH401169.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000006 genomic
scaffold, whole genome shotgun sequence
Length = 13452964
Score = 167 bits (84), Expect = 8e-039
Identities = 129/144 (89%)
Strand = Plus / Minus
Query: 270 ccctcccggcaaactccagtcgaagtggaacagcaacgcggcgagcgcgatctcgatatg 329
||||||||||| |||||||||||||||||||||| |||||||||||||| ||||| ||
Sbjct: 4900926 ccctcccggcagcctccagtcgaagtggaacagcagcgcggcgagcgcgagctcgacgtg 4900867
Query: 330 agccagcccgaacgtcatgccggggcagatccgccgcccggcaccgaacggtatgaactc 389
||||||||||||| ||||||||||||||||| || |||||| |||||||| |||| |||
Sbjct: 4900866 cgccagcccgaacgccatgccggggcagatcctcctcccggcgccgaacgggatgagctc 4900807
Query: 390 gaagtctgcccccttgaagtccct 413
|||||| |||||| ||||||||||
Sbjct: 4900806 gaagtccgcccccctgaagtccct 4900783
Score = 141 bits (71), Expect = 5e-031
Identities = 117/131 (89%), Gaps = 1/131 (0%)
Strand = Plus / Minus
Query: 283 ctccagtcgaagtggaacagcaacgcggcgagcgcgatctcgatatgagccagcccgaac 342
|||||||||||||||||||||| |||||||||||||| ||||| || |||||||||||
Sbjct: 4905384 ctccagtcgaagtggaacagcagcgcggcgagcgcgagctcgacgtgcaccagcccgaac 4905325
Query: 343 gtcatgccggggcagatccgccgcccggcaccgaacggtatgaactcgaagtctgccccc 402
| |||||||||||| |||||||| ||||| |||||||| |||| ||||||||| ||||||
Sbjct: 4905324 gccatgccggggcacatccgccggccggcgccgaacgggatgagctcgaagtc-gccccc 4905266
Query: 403 ttgaagtccct 413
||||||||||
Sbjct: 4905265 ctgaagtccct 4905255
Score = 87.7 bits (44), Expect = 6e-015
Identities = 65/72 (90%)
Strand = Plus / Minus
Query: 466 gccgggtccctgccgatcgcccacgcgttcacgatcaccgtgatgcccgccggcacgtcg 525
|||| ||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 4905199 gccgtgtcccggccgatcgcccacgcgttcacgagcaccgtggcgcccgccggcacgtcg 4905140
Query: 526 tacccgagcacc 537
| |||||||||
Sbjct: 4905139 tggccgagcacc 4905128
Score = 83.8 bits (42), Expect = 9e-014
Identities = 72/82 (87%)
Strand = Plus / Minus
Query: 466 gccgggtccctgccgatcgcccacgcgttcacgatcaccgtgatgcccgccggcacgtcg 525
|||| ||||| ||||||||||||||||||||||| |||| | |||| ||||||||||||
Sbjct: 4900727 gccgcgtcccggccgatcgcccacgcgttcacgagcaccatcgtgccggccggcacgtcg 4900668
Query: 526 tacccgagcacctggcacgcgc 547
|| |||| ||||| ||||||||
Sbjct: 4900667 tagccgaacaccttgcacgcgc 4900646
Score = 54.0 bits (27), Expect = 8e-005
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 470 ggtccctgccgatcgcccacgcgttcacgatcacc 504
||||||| || ||||||||||||||||||||||||
Sbjct: 4902936 ggtccctaccaatcgcccacgcgttcacgatcacc 4902902
Score = 46.1 bits (23), Expect = 0.020
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 285 ccagtcgaagtggaacagcaacgcggcgagcgcga 319
|||||| |||||| ||||||| |||||||||||||
Sbjct: 4804464 ccagtcaaagtggtacagcaaagcggcgagcgcga 4804498
Score = 42.1 bits (21), Expect = 0.31
Identities = 54/65 (83%)
Strand = Plus / Minus
Query: 331 gccagcccgaacgtcatgccggggcagatccgccgcccggcaccgaacggtatgaactcg 390
|||| |||||| || ||||| ||||| |||| || || || || |||||||||||||||
Sbjct: 4903075 gccatcccgaatgtgatgccagggcatatccttcgtccagctccaaacggtatgaactcg 4903016
Query: 391 aagtc 395
|||||
Sbjct: 4903015 aagtc 4903011
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 167 bits (84), Expect = 8e-039
Identities = 129/144 (89%)
Strand = Plus / Minus
Query: 270 ccctcccggcaaactccagtcgaagtggaacagcaacgcggcgagcgcgatctcgatatg 329
||||||||||| |||||||||||||||||||||| |||||||||||||| ||||| ||
Sbjct: 4900926 ccctcccggcagcctccagtcgaagtggaacagcagcgcggcgagcgcgagctcgacgtg 4900867
Query: 330 agccagcccgaacgtcatgccggggcagatccgccgcccggcaccgaacggtatgaactc 389
||||||||||||| ||||||||||||||||| || |||||| |||||||| |||| |||
Sbjct: 4900866 cgccagcccgaacgccatgccggggcagatcctcctcccggcgccgaacgggatgagctc 4900807
Query: 390 gaagtctgcccccttgaagtccct 413
|||||| |||||| ||||||||||
Sbjct: 4900806 gaagtccgcccccctgaagtccct 4900783
Score = 141 bits (71), Expect = 5e-031
Identities = 117/131 (89%), Gaps = 1/131 (0%)
Strand = Plus / Minus
Query: 283 ctccagtcgaagtggaacagcaacgcggcgagcgcgatctcgatatgagccagcccgaac 342
|||||||||||||||||||||| |||||||||||||| ||||| || |||||||||||
Sbjct: 4905384 ctccagtcgaagtggaacagcagcgcggcgagcgcgagctcgacgtgcaccagcccgaac 4905325
Query: 343 gtcatgccggggcagatccgccgcccggcaccgaacggtatgaactcgaagtctgccccc 402
| |||||||||||| |||||||| ||||| |||||||| |||| ||||||||| ||||||
Sbjct: 4905324 gccatgccggggcacatccgccggccggcgccgaacgggatgagctcgaagtc-gccccc 4905266
Query: 403 ttgaagtccct 413
||||||||||
Sbjct: 4905265 ctgaagtccct 4905255
Score = 87.7 bits (44), Expect = 6e-015
Identities = 65/72 (90%)
Strand = Plus / Minus
Query: 466 gccgggtccctgccgatcgcccacgcgttcacgatcaccgtgatgcccgccggcacgtcg 525
|||| ||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 4905199 gccgtgtcccggccgatcgcccacgcgttcacgagcaccgtggcgcccgccggcacgtcg 4905140
Query: 526 tacccgagcacc 537
| |||||||||
Sbjct: 4905139 tggccgagcacc 4905128
Score = 83.8 bits (42), Expect = 9e-014
Identities = 72/82 (87%)
Strand = Plus / Minus
Query: 466 gccgggtccctgccgatcgcccacgcgttcacgatcaccgtgatgcccgccggcacgtcg 525
|||| ||||| ||||||||||||||||||||||| |||| | |||| ||||||||||||
Sbjct: 4900727 gccgcgtcccggccgatcgcccacgcgttcacgagcaccatcgtgccggccggcacgtcg 4900668
Query: 526 tacccgagcacctggcacgcgc 547
|| |||| ||||| ||||||||
Sbjct: 4900667 tagccgaacaccttgcacgcgc 4900646
Score = 54.0 bits (27), Expect = 8e-005
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 470 ggtccctgccgatcgcccacgcgttcacgatcacc 504
||||||| || ||||||||||||||||||||||||
Sbjct: 4902936 ggtccctaccaatcgcccacgcgttcacgatcacc 4902902
Score = 46.1 bits (23), Expect = 0.020
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 285 ccagtcgaagtggaacagcaacgcggcgagcgcga 319
|||||| |||||| ||||||| |||||||||||||
Sbjct: 4804464 ccagtcaaagtggtacagcaaagcggcgagcgcga 4804498
Score = 44.1 bits (22), Expect = 0.079
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 480 gatcgcccacgcgttcacgatcaccgtgatgccc 513
||||||||||||||| | |||||||||| |||||
Sbjct: 21696630 gatcgcccacgcgttgaagatcaccgtggtgccc 21696663
Score = 42.1 bits (21), Expect = 0.31
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 120 aaccgaacaagccctcaaggagaac 144
||||||||||| |||||||||||||
Sbjct: 34933851 aaccgaacaaggcctcaaggagaac 34933875
Score = 42.1 bits (21), Expect = 0.31
Identities = 54/65 (83%)
Strand = Plus / Minus
Query: 331 gccagcccgaacgtcatgccggggcagatccgccgcccggcaccgaacggtatgaactcg 390
|||| |||||| || ||||| ||||| |||| || || || || |||||||||||||||
Sbjct: 4903075 gccatcccgaatgtgatgccagggcatatccttcgtccagctccaaacggtatgaactcg 4903016
Query: 391 aagtc 395
|||||
Sbjct: 4903015 aagtc 4903011
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 167 bits (84), Expect = 8e-039
Identities = 129/144 (89%)
Strand = Plus / Minus
Query: 270 ccctcccggcaaactccagtcgaagtggaacagcaacgcggcgagcgcgatctcgatatg 329
||||||||||| |||||||||||||||||||||| |||||||||||||| ||||| ||
Sbjct: 4825744 ccctcccggcagcctccagtcgaagtggaacagcagcgcggcgagcgcgagctcgacgtg 4825685
Query: 330 agccagcccgaacgtcatgccggggcagatccgccgcccggcaccgaacggtatgaactc 389
||||||||||||| ||||||||||||||||| || |||||| |||||||| |||| |||
Sbjct: 4825684 cgccagcccgaacgccatgccggggcagatcctcctcccggcgccgaacgggatgagctc 4825625
Query: 390 gaagtctgcccccttgaagtccct 413
|||||| |||||| ||||||||||
Sbjct: 4825624 gaagtccgcccccctgaagtccct 4825601
Score = 149 bits (75), Expect = 2e-033
Identities = 117/131 (89%)
Strand = Plus / Minus
Query: 283 ctccagtcgaagtggaacagcaacgcggcgagcgcgatctcgatatgagccagcccgaac 342
|||||||||||||||||||||| |||||||||||||| ||||| || |||||||||||
Sbjct: 4830200 ctccagtcgaagtggaacagcagcgcggcgagcgcgagctcgacgtgcaccagcccgaac 4830141
Query: 343 gtcatgccggggcagatccgccgcccggcaccgaacggtatgaactcgaagtctgccccc 402
| |||||||||||| |||||||| ||||| |||||||| |||| ||||||||| ||||||
Sbjct: 4830140 gccatgccggggcacatccgccggccggcgccgaacgggatgagctcgaagtccgccccc 4830081
Query: 403 ttgaagtccct 413
||||||||||
Sbjct: 4830080 ctgaagtccct 4830070
Score = 87.7 bits (44), Expect = 6e-015
Identities = 65/72 (90%)
Strand = Plus / Minus
Query: 466 gccgggtccctgccgatcgcccacgcgttcacgatcaccgtgatgcccgccggcacgtcg 525
|||| ||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 4830014 gccgtgtcccggccgatcgcccacgcgttcacgagcaccgtggcgcccgccggcacgtcg 4829955
Query: 526 tacccgagcacc 537
| |||||||||
Sbjct: 4829954 tggccgagcacc 4829943
Score = 83.8 bits (42), Expect = 9e-014
Identities = 72/82 (87%)
Strand = Plus / Minus
Query: 466 gccgggtccctgccgatcgcccacgcgttcacgatcaccgtgatgcccgccggcacgtcg 525
|||| ||||| ||||||||||||||||||||||| |||| | |||| ||||||||||||
Sbjct: 4825545 gccgcgtcccggccgatcgcccacgcgttcacgagcaccatcgtgccggccggcacgtcg 4825486
Query: 526 tacccgagcacctggcacgcgc 547
|| |||| ||||| ||||||||
Sbjct: 4825485 tagccgaacaccttgcacgcgc 4825464
Score = 54.0 bits (27), Expect = 8e-005
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 470 ggtccctgccgatcgcccacgcgttcacgatcacc 504
||||||| || ||||||||||||||||||||||||
Sbjct: 4827752 ggtccctaccaatcgcccacgcgttcacgatcacc 4827718
Score = 46.1 bits (23), Expect = 0.020
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 285 ccagtcgaagtggaacagcaacgcggcgagcgcga 319
|||||| |||||| ||||||| |||||||||||||
Sbjct: 4721173 ccagtcaaagtggtacagcaaagcggcgagcgcga 4721207
Score = 44.1 bits (22), Expect = 0.079
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 480 gatcgcccacgcgttcacgatcaccgtgatgccc 513
||||||||||||||| | |||||||||| |||||
Sbjct: 21924369 gatcgcccacgcgttgaagatcaccgtggtgccc 21924402
Score = 44.1 bits (22), Expect = 0.079
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 353 ggcagatccgccgcccggcaccgaacggtatgaactcg 390
||||||||||||| ||| |||| ||||| |||||||||
Sbjct: 17776326 ggcagatccgccgtccgccaccaaacgggatgaactcg 17776363
Score = 42.1 bits (21), Expect = 0.31
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 120 aaccgaacaagccctcaaggagaac 144
||||||||||| |||||||||||||
Sbjct: 34850877 aaccgaacaaggcctcaaggagaac 34850901
Score = 42.1 bits (21), Expect = 0.31
Identities = 54/65 (83%)
Strand = Plus / Minus
Query: 331 gccagcccgaacgtcatgccggggcagatccgccgcccggcaccgaacggtatgaactcg 390
|||| |||||| || ||||| ||||| |||| || || || || |||||||||||||||
Sbjct: 4827891 gccatcccgaatgtgatgccagggcatatccttcgtccagctccaaacggtatgaactcg 4827832
Query: 391 aagtc 395
|||||
Sbjct: 4827831 aagtc 4827827
>ref|XM_464380.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1572
Score = 149 bits (75), Expect = 2e-033
Identities = 117/131 (89%)
Strand = Plus / Minus
Query: 283 ctccagtcgaagtggaacagcaacgcggcgagcgcgatctcgatatgagccagcccgaac 342
|||||||||||||||||||||| |||||||||||||| ||||| || |||||||||||
Sbjct: 1442 ctccagtcgaagtggaacagcagcgcggcgagcgcgagctcgacgtgcaccagcccgaac 1383
Query: 343 gtcatgccggggcagatccgccgcccggcaccgaacggtatgaactcgaagtctgccccc 402
| |||||||||||| |||||||| ||||| |||||||| |||| ||||||||| ||||||
Sbjct: 1382 gccatgccggggcacatccgccggccggcgccgaacgggatgagctcgaagtccgccccc 1323
Query: 403 ttgaagtccct 413
||||||||||
Sbjct: 1322 ctgaagtccct 1312
Score = 87.7 bits (44), Expect = 6e-015
Identities = 65/72 (90%)
Strand = Plus / Minus
Query: 466 gccgggtccctgccgatcgcccacgcgttcacgatcaccgtgatgcccgccggcacgtcg 525
|||| ||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 1256 gccgtgtcccggccgatcgcccacgcgttcacgagcaccgtggcgcccgccggcacgtcg 1197
Query: 526 tacccgagcacc 537
| |||||||||
Sbjct: 1196 tggccgagcacc 1185
>dbj|AP002968.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0416G11
Length = 138858
Score = 115 bits (58), Expect = 3e-023
Identities = 109/126 (86%)
Strand = Plus / Plus
Query: 285 ccagtcgaagtggaacagcaacgcggcgagcgcgatctcgatatgagccagcccgaacgt 344
||||||||||||| |||| | ||||||||||||| ||| || | |||||||||||||
Sbjct: 2004 ccagtcgaagtggtacaggagggcggcgagcgcgagctccatgttggccagcccgaacgc 2063
Query: 345 catgccggggcagatccgccgcccggcaccgaacggtatgaactcgaagtctgccccctt 404
||| |||||||| || ||||||||||| |||||||||||| |||||||||| | ||||||
Sbjct: 2064 catcccggggcacatacgccgcccggcgccgaacggtatgtactcgaagtccgtcccctt 2123
Query: 405 gaagtc 410
||||||
Sbjct: 2124 gaagtc 2129
Score = 67.9 bits (34), Expect = 5e-009
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 456 gtcccagggggccgggtccctgccgatcgcccacgcgttcacgatcaccgtgatgcccgc 515
||||||| | ||||||||||||||||||||||||||||| |||| |||| | | ||| |
Sbjct: 2178 gtcccagtgcgccgggtccctgccgatcgcccacgcgttgacgagcaccatcacaccctc 2237
Query: 516 cggcacgtcg 525
||||||||||
Sbjct: 2238 cggcacgtcg 2247
>dbj|AP003204.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:B1111C09
Length = 156393
Score = 115 bits (58), Expect = 3e-023
Identities = 109/126 (86%)
Strand = Plus / Plus
Query: 285 ccagtcgaagtggaacagcaacgcggcgagcgcgatctcgatatgagccagcccgaacgt 344
||||||||||||| |||| | ||||||||||||| ||| || | |||||||||||||
Sbjct: 121616 ccagtcgaagtggtacaggagggcggcgagcgcgagctccatgttggccagcccgaacgc 121675
Query: 345 catgccggggcagatccgccgcccggcaccgaacggtatgaactcgaagtctgccccctt 404
||| |||||||| || ||||||||||| |||||||||||| |||||||||| | ||||||
Sbjct: 121676 catcccggggcacatacgccgcccggcgccgaacggtatgtactcgaagtccgtcccctt 121735
Query: 405 gaagtc 410
||||||
Sbjct: 121736 gaagtc 121741
Score = 67.9 bits (34), Expect = 5e-009
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 456 gtcccagggggccgggtccctgccgatcgcccacgcgttcacgatcaccgtgatgcccgc 515
||||||| | ||||||||||||||||||||||||||||| |||| |||| | | ||| |
Sbjct: 121790 gtcccagtgcgccgggtccctgccgatcgcccacgcgttgacgagcaccatcacaccctc 121849
Query: 516 cggcacgtcg 525
||||||||||
Sbjct: 121850 cggcacgtcg 121859
>gb|AACV01001144.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg001144, whole
genome shotgun sequence
Length = 7261
Score = 115 bits (58), Expect = 3e-023
Identities = 109/126 (86%)
Strand = Plus / Plus
Query: 285 ccagtcgaagtggaacagcaacgcggcgagcgcgatctcgatatgagccagcccgaacgt 344
||||||||||||| |||| | ||||||||||||| ||| || | |||||||||||||
Sbjct: 3480 ccagtcgaagtggtacaggagggcggcgagcgcgagctccatgttggccagcccgaacgc 3539
Query: 345 catgccggggcagatccgccgcccggcaccgaacggtatgaactcgaagtctgccccctt 404
||| |||||||| || ||||||||||| |||||||||||| |||||||||| | ||||||
Sbjct: 3540 catcccggggcacatacgccgcccggcgccgaacggtatgtactcgaagtccgtcccctt 3599
Query: 405 gaagtc 410
||||||
Sbjct: 3600 gaagtc 3605
Score = 67.9 bits (34), Expect = 5e-009
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 456 gtcccagggggccgggtccctgccgatcgcccacgcgttcacgatcaccgtgatgcccgc 515
||||||| | ||||||||||||||||||||||||||||| |||| |||| | | ||| |
Sbjct: 3654 gtcccagtgcgccgggtccctgccgatcgcccacgcgttgacgagcaccatcacaccctc 3713
Query: 516 cggcacgtcg 525
||||||||||
Sbjct: 3714 cggcacgtcg 3723
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 115 bits (58), Expect = 3e-023
Identities = 109/126 (86%)
Strand = Plus / Plus
Query: 285 ccagtcgaagtggaacagcaacgcggcgagcgcgatctcgatatgagccagcccgaacgt 344
||||||||||||| |||| | ||||||||||||| ||| || | |||||||||||||
Sbjct: 15561889 ccagtcgaagtggtacaggagggcggcgagcgcgagctccatgttggccagcccgaacgc 15561948
Query: 345 catgccggggcagatccgccgcccggcaccgaacggtatgaactcgaagtctgccccctt 404
||| |||||||| || ||||||||||| |||||||||||| |||||||||| | ||||||
Sbjct: 15561949 catcccggggcacatacgccgcccggcgccgaacggtatgtactcgaagtccgtcccctt 15562008
Query: 405 gaagtc 410
||||||
Sbjct: 15562009 gaagtc 15562014
Score = 67.9 bits (34), Expect = 5e-009
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 456 gtcccagggggccgggtccctgccgatcgcccacgcgttcacgatcaccgtgatgcccgc 515
||||||| | ||||||||||||||||||||||||||||| |||| |||| | | ||| |
Sbjct: 15562063 gtcccagtgcgccgggtccctgccgatcgcccacgcgttgacgagcaccatcacaccctc 15562122
Query: 516 cggcacgtcg 525
||||||||||
Sbjct: 15562123 cggcacgtcg 15562132
Score = 48.1 bits (24), Expect = 0.005
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 355 cagatccgccgcccggcaccgaacggtatgaactcgaagtctgcccccttgaagtc 410
|||||||||||||| || || ||||||| ||||| |||||||| ||| |||||||
Sbjct: 20201353 cagatccgccgccctgcgccaaacggtaagaactggaagtctgtccctatgaagtc 20201298
Score = 46.1 bits (23), Expect = 0.020
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 346 atgccggggcagatccgccgcccggcaccgaacgg 380
|||||||||||| ||||||||||||| ||| ||||
Sbjct: 35036074 atgccggggcagctccgccgcccggcgccggacgg 35036108
>ref|NM_193877.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1557
Score = 115 bits (58), Expect = 3e-023
Identities = 109/126 (86%)
Strand = Plus / Minus
Query: 285 ccagtcgaagtggaacagcaacgcggcgagcgcgatctcgatatgagccagcccgaacgt 344
||||||||||||| |||| | ||||||||||||| ||| || | |||||||||||||
Sbjct: 1428 ccagtcgaagtggtacaggagggcggcgagcgcgagctccatgttggccagcccgaacgc 1369
Query: 345 catgccggggcagatccgccgcccggcaccgaacggtatgaactcgaagtctgccccctt 404
||| |||||||| || ||||||||||| |||||||||||| |||||||||| | ||||||
Sbjct: 1368 catcccggggcacatacgccgcccggcgccgaacggtatgtactcgaagtccgtcccctt 1309
Query: 405 gaagtc 410
||||||
Sbjct: 1308 gaagtc 1303
Score = 67.9 bits (34), Expect = 5e-009
Identities = 61/70 (87%)
Strand = Plus / Minus
Query: 456 gtcccagggggccgggtccctgccgatcgcccacgcgttcacgatcaccgtgatgcccgc 515
||||||| | ||||||||||||||||||||||||||||| |||| |||| | | ||| |
Sbjct: 1254 gtcccagtgcgccgggtccctgccgatcgcccacgcgttgacgagcaccatcacaccctc 1195
Query: 516 cggcacgtcg 525
||||||||||
Sbjct: 1194 cggcacgtcg 1185
>ref|NT_079947.2| Oryza sativa (japonica cultivar-group)
Length = 1767736
Score = 115 bits (58), Expect = 3e-023
Identities = 109/126 (86%)
Strand = Plus / Plus
Query: 285 ccagtcgaagtggaacagcaacgcggcgagcgcgatctcgatatgagccagcccgaacgt 344
||||||||||||| |||| | ||||||||||||| ||| || | |||||||||||||
Sbjct: 590354 ccagtcgaagtggtacaggagggcggcgagcgcgagctccatgttggccagcccgaacgc 590413
Query: 345 catgccggggcagatccgccgcccggcaccgaacggtatgaactcgaagtctgccccctt 404
||| |||||||| || ||||||||||| |||||||||||| |||||||||| | ||||||
Sbjct: 590414 catcccggggcacatacgccgcccggcgccgaacggtatgtactcgaagtccgtcccctt 590473
Query: 405 gaagtc 410
||||||
Sbjct: 590474 gaagtc 590479
Score = 67.9 bits (34), Expect = 5e-009
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 456 gtcccagggggccgggtccctgccgatcgcccacgcgttcacgatcaccgtgatgcccgc 515
||||||| | ||||||||||||||||||||||||||||| |||| |||| | | ||| |
Sbjct: 590528 gtcccagtgcgccgggtccctgccgatcgcccacgcgttgacgagcaccatcacaccctc 590587
Query: 516 cggcacgtcg 525
||||||||||
Sbjct: 590588 cggcacgtcg 590597
>gb|CH401165.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000002 genomic
scaffold, whole genome shotgun sequence
Length = 5008528
Score = 115 bits (58), Expect = 3e-023
Identities = 109/126 (86%)
Strand = Plus / Plus
Query: 285 ccagtcgaagtggaacagcaacgcggcgagcgcgatctcgatatgagccagcccgaacgt 344
||||||||||||| |||| | ||||||||||||| ||| || | |||||||||||||
Sbjct: 3978455 ccagtcgaagtggtacaggagggcggcgagcgcgagctccatgttggccagcccgaacgc 3978514
Query: 345 catgccggggcagatccgccgcccggcaccgaacggtatgaactcgaagtctgccccctt 404
||| |||||||| || ||||||||||| |||||||||||| |||||||||| | ||||||
Sbjct: 3978515 catcccggggcacatacgccgcccggcgccgaacggtatgtactcgaagtccgtcccctt 3978574
Query: 405 gaagtc 410
||||||
Sbjct: 3978575 gaagtc 3978580
Score = 67.9 bits (34), Expect = 5e-009
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 456 gtcccagggggccgggtccctgccgatcgcccacgcgttcacgatcaccgtgatgcccgc 515
||||||| | ||||||||||||||||||||||||||||| |||| |||| | | ||| |
Sbjct: 3978629 gtcccagtgcgccgggtccctgccgatcgcccacgcgttgacgagcaccatcacaccctc 3978688
Query: 516 cggcacgtcg 525
||||||||||
Sbjct: 3978689 cggcacgtcg 3978698
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 115 bits (58), Expect = 3e-023
Identities = 109/126 (86%)
Strand = Plus / Plus
Query: 285 ccagtcgaagtggaacagcaacgcggcgagcgcgatctcgatatgagccagcccgaacgt 344
||||||||||||| |||| | ||||||||||||| ||| || | |||||||||||||
Sbjct: 15594950 ccagtcgaagtggtacaggagggcggcgagcgcgagctccatgttggccagcccgaacgc 15595009
Query: 345 catgccggggcagatccgccgcccggcaccgaacggtatgaactcgaagtctgccccctt 404
||| |||||||| || ||||||||||| |||||||||||| |||||||||| | ||||||
Sbjct: 15595010 catcccggggcacatacgccgcccggcgccgaacggtatgtactcgaagtccgtcccctt 15595069
Query: 405 gaagtc 410
||||||
Sbjct: 15595070 gaagtc 15595075
Score = 67.9 bits (34), Expect = 5e-009
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 456 gtcccagggggccgggtccctgccgatcgcccacgcgttcacgatcaccgtgatgcccgc 515
||||||| | ||||||||||||||||||||||||||||| |||| |||| | | ||| |
Sbjct: 15595124 gtcccagtgcgccgggtccctgccgatcgcccacgcgttgacgagcaccatcacaccctc 15595183
Query: 516 cggcacgtcg 525
||||||||||
Sbjct: 15595184 cggcacgtcg 15595193
Score = 48.1 bits (24), Expect = 0.005
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 355 cagatccgccgcccggcaccgaacggtatgaactcgaagtctgcccccttgaagtc 410
|||||||||||||| || || ||||||| ||||| |||||||| ||| |||||||
Sbjct: 19794148 cagatccgccgccctgcgccaaacggtaagaactggaagtctgtccctatgaagtc 19794093
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 115 bits (58), Expect = 3e-023
Identities = 109/126 (86%)
Strand = Plus / Plus
Query: 285 ccagtcgaagtggaacagcaacgcggcgagcgcgatctcgatatgagccagcccgaacgt 344
||||||||||||| |||| | ||||||||||||| ||| || | |||||||||||||
Sbjct: 15564107 ccagtcgaagtggtacaggagggcggcgagcgcgagctccatgttggccagcccgaacgc 15564166
Query: 345 catgccggggcagatccgccgcccggcaccgaacggtatgaactcgaagtctgccccctt 404
||| |||||||| || ||||||||||| |||||||||||| |||||||||| | ||||||
Sbjct: 15564167 catcccggggcacatacgccgcccggcgccgaacggtatgtactcgaagtccgtcccctt 15564226
Query: 405 gaagtc 410
||||||
Sbjct: 15564227 gaagtc 15564232
Score = 67.9 bits (34), Expect = 5e-009
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 456 gtcccagggggccgggtccctgccgatcgcccacgcgttcacgatcaccgtgatgcccgc 515
||||||| | ||||||||||||||||||||||||||||| |||| |||| | | ||| |
Sbjct: 15564281 gtcccagtgcgccgggtccctgccgatcgcccacgcgttgacgagcaccatcacaccctc 15564340
Query: 516 cggcacgtcg 525
||||||||||
Sbjct: 15564341 cggcacgtcg 15564350
Score = 48.1 bits (24), Expect = 0.005
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 355 cagatccgccgcccggcaccgaacggtatgaactcgaagtctgcccccttgaagtc 410
|||||||||||||| || || ||||||| ||||| |||||||| ||| |||||||
Sbjct: 20122636 cagatccgccgccctgcgccaaacggtaagaactggaagtctgtccctatgaagtc 20122581
Score = 46.1 bits (23), Expect = 0.020
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 346 atgccggggcagatccgccgcccggcaccgaacgg 380
|||||||||||| ||||||||||||| ||| ||||
Sbjct: 34955404 atgccggggcagctccgccgcccggcgccggacgg 34955438
>gb|AQ870215.1|AQ870215 nbeb0036N08f CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0036N08f, DNA sequence
Length = 754
Score = 67.9 bits (34), Expect = 5e-009
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 349 ccggggcagatccgccgcccggcaccgaacggtatgaactcgaagtctgcccccttgaag 408
|||||||| || ||||| ||||| |||||||||||| |||||||||| | ||||||||||
Sbjct: 523 ccggggcacatacgccggccggcgccgaacggtatgtactcgaagtccgtccccttgaag 582
Query: 409 tc 410
||
Sbjct: 583 tc 584
Score = 65.9 bits (33), Expect = 2e-008
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 456 gtcccagggggccgggtccctgccgatcgcccacgcgttcacgatcacc 504
||||||| | ||||||||||||||||||||||||||||| |||| ||||
Sbjct: 633 gtcccagtgcgccgggtccctgccgatcgcccacgcgttgacgagcacc 681
>ref|NT_107233.1| Oryza sativa (japonica cultivar-group)
Length = 6315341
Score = 63.9 bits (32), Expect = 8e-008
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 348 gccggggcagatccgccgcccggcaccgaacggtatgaactcgaagtctgcccccttgaa 407
||||||||| |||| ||| ||||| |||||||| | |||||||||||| | |||||||||
Sbjct: 3241839 gccggggcacatcctccggccggccccgaacggcacgaactcgaagtccgtccccttgaa 3241898
Query: 408 gtcc 411
||||
Sbjct: 3241899 gtcc 3241902
Score = 63.9 bits (32), Expect = 8e-008
Identities = 65/76 (85%)
Strand = Plus / Minus
Query: 336 cccgaacgtcatgccggggcagatccgccgcccggcaccgaacggtatgaactcgaagtc 395
|||||||| ||| |||||||| |||||||| ||| | |||||||| | || |||||||||
Sbjct: 3155717 cccgaacgccatcccggggcacatccgccggccgccgccgaacggcaggagctcgaagtc 3155658
Query: 396 tgcccccttgaagtcc 411
|| ||||||||||||
Sbjct: 3155657 ggcgcccttgaagtcc 3155642
Score = 61.9 bits (31), Expect = 3e-007
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 477 gccgatcgcccacgcgttcacgatcaccgtgatgcccgccggcacgtcgta 527
||||||||||||| ||||||||| ||||||| ||||||||| ||||||||
Sbjct: 1614252 gccgatcgcccacacgttcacgaacaccgtggcgcccgccgggacgtcgta 1614302
Score = 54.0 bits (27), Expect = 8e-005
Identities = 48/55 (87%)
Strand = Plus / Minus
Query: 340 aacgtcatgccggggcagatccgccgcccggcaccgaacggtatgaactcgaagt 394
|||| ||| |||||||| |||||||||||||| |||||||| | || ||||||||
Sbjct: 3110698 aacgccatcccggggcacatccgccgcccggcgccgaacggaaggagctcgaagt 3110644
Score = 52.0 bits (26), Expect = 3e-004
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 334 agcccgaacgtcatgccggggcagatccgccgcccggcaccgaacggtatgaactcgaag 393
|||||||||| ||| || ||||| || |||||||| ||||| ||||| | ||||||||||
Sbjct: 3176282 agcccgaacgccatccctgggcacattcgccgcccagcaccaaacggcaggaactcgaag 3176223
Query: 394 tc 395
||
Sbjct: 3176222 tc 3176221
Score = 50.1 bits (25), Expect = 0.001
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 516 cggcacgtcgtacccgagcacctggcacg 544
|||||||||||| ||||||||||||||||
Sbjct: 3119611 cggcacgtcgtagccgagcacctggcacg 3119583
Score = 50.1 bits (25), Expect = 0.001
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 516 cggcacgtcgtacccgagcacctggcacg 544
|||||||||||| ||||||||||||||||
Sbjct: 3110495 cggcacgtcgtagccgagcacctggcacg 3110467
Score = 42.1 bits (21), Expect = 0.31
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 480 gatcgcccacgcgttcacgatcaccgtgatgcccgccggcacgtcgtacccgagcac 536
||||||||||||||| |||| |||| || | | ||||||||||||| ||||||||
Sbjct: 3241974 gatcgcccacgcgttgacgagcaccatggcacgctccggcacgtcgtagccgagcac 3242030
Score = 42.1 bits (21), Expect = 0.31
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 469 gggtccctgccgatcgcccacgcgttcac 497
|||||||||| |||||||||||||||||
Sbjct: 3187374 gggtccctgctaatcgcccacgcgttcac 3187402
Score = 42.1 bits (21), Expect = 0.31
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 516 cggcacgtcgtacccgagcacctggcacg 544
|||||||||||| ||||||||| ||||||
Sbjct: 3168546 cggcacgtcgtagccgagcacccggcacg 3168518
Score = 42.1 bits (21), Expect = 0.31
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 516 cggcacgtcgtacccgagcacctggcacg 544
|||||||||||| ||||||||| ||||||
Sbjct: 3155519 cggcacgtcgtagccgagcacccggcacg 3155491
Score = 42.1 bits (21), Expect = 0.31
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 348 gccggggcagatccgccgccc 368
|||||||||||||||||||||
Sbjct: 1614105 gccggggcagatccgccgccc 1614125
>dbj|AP003523.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0416A11
Length = 171519
Score = 63.9 bits (32), Expect = 8e-008
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 348 gccggggcagatccgccgcccggcaccgaacggtatgaactcgaagtctgcccccttgaa 407
||||||||| |||| ||| ||||| |||||||| | |||||||||||| | |||||||||
Sbjct: 58558 gccggggcacatcctccggccggccccgaacggcacgaactcgaagtccgtccccttgaa 58617
Query: 408 gtcc 411
||||
Sbjct: 58618 gtcc 58621
Score = 42.1 bits (21), Expect = 0.31
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 480 gatcgcccacgcgttcacgatcaccgtgatgcccgccggcacgtcgtacccgagcac 536
||||||||||||||| |||| |||| || | | ||||||||||||| ||||||||
Sbjct: 58693 gatcgcccacgcgttgacgagcaccatggcacgctccggcacgtcgtagccgagcac 58749
Score = 42.1 bits (21), Expect = 0.31
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 469 gggtccctgccgatcgcccacgcgttcac 497
|||||||||| |||||||||||||||||
Sbjct: 4093 gggtccctgctaatcgcccacgcgttcac 4121
>dbj|AP003571.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0458E02
Length = 154458
Score = 63.9 bits (32), Expect = 8e-008
Identities = 65/76 (85%)
Strand = Plus / Minus
Query: 336 cccgaacgtcatgccggggcagatccgccgcccggcaccgaacggtatgaactcgaagtc 395
|||||||| ||| |||||||| |||||||| ||| | |||||||| | || |||||||||
Sbjct: 113677 cccgaacgccatcccggggcacatccgccggccgccgccgaacggcaggagctcgaagtc 113618
Query: 396 tgcccccttgaagtcc 411
|| ||||||||||||
Sbjct: 113617 ggcgcccttgaagtcc 113602
Score = 54.0 bits (27), Expect = 8e-005
Identities = 48/55 (87%)
Strand = Plus / Minus
Query: 340 aacgtcatgccggggcagatccgccgcccggcaccgaacggtatgaactcgaagt 394
|||| ||| |||||||| |||||||||||||| |||||||| | || ||||||||
Sbjct: 68658 aacgccatcccggggcacatccgccgcccggcgccgaacggaaggagctcgaagt 68604
Score = 52.0 bits (26), Expect = 3e-004
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 334 agcccgaacgtcatgccggggcagatccgccgcccggcaccgaacggtatgaactcgaag 393
|||||||||| ||| || ||||| || |||||||| ||||| ||||| | ||||||||||
Sbjct: 134242 agcccgaacgccatccctgggcacattcgccgcccagcaccaaacggcaggaactcgaag 134183
Query: 394 tc 395
||
Sbjct: 134182 tc 134181
Score = 50.1 bits (25), Expect = 0.001
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 516 cggcacgtcgtacccgagcacctggcacg 544
|||||||||||| ||||||||||||||||
Sbjct: 77571 cggcacgtcgtagccgagcacctggcacg 77543
Score = 50.1 bits (25), Expect = 0.001
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 516 cggcacgtcgtacccgagcacctggcacg 544
|||||||||||| ||||||||||||||||
Sbjct: 68455 cggcacgtcgtagccgagcacctggcacg 68427
Score = 42.1 bits (21), Expect = 0.31
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 469 gggtccctgccgatcgcccacgcgttcac 497
|||||||||| |||||||||||||||||
Sbjct: 145334 gggtccctgctaatcgcccacgcgttcac 145362
Score = 42.1 bits (21), Expect = 0.31
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 516 cggcacgtcgtacccgagcacctggcacg 544
|||||||||||| ||||||||| ||||||
Sbjct: 126506 cggcacgtcgtagccgagcacccggcacg 126478
Score = 42.1 bits (21), Expect = 0.31
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 516 cggcacgtcgtacccgagcacctggcacg 544
|||||||||||| ||||||||| ||||||
Sbjct: 113479 cggcacgtcgtagccgagcacccggcacg 113451
>gb|AACV01014652.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014652, whole
genome shotgun sequence
Length = 11777
Score = 63.9 bits (32), Expect = 8e-008
Identities = 65/76 (85%)
Strand = Plus / Minus
Query: 336 cccgaacgtcatgccggggcagatccgccgcccggcaccgaacggtatgaactcgaagtc 395
|||||||| ||| |||||||| |||||||| ||| | |||||||| | || |||||||||
Sbjct: 7267 cccgaacgccatcccggggcacatccgccggccgccgccgaacggcaggagctcgaagtc 7208
Query: 396 tgcccccttgaagtcc 411
|| ||||||||||||
Sbjct: 7207 ggcgcccttgaagtcc 7192
Score = 42.1 bits (21), Expect = 0.31
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 516 cggcacgtcgtacccgagcacctggcacg 544
|||||||||||| ||||||||| ||||||
Sbjct: 7069 cggcacgtcgtagccgagcacccggcacg 7041
>gb|AACV01014662.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014662, whole
genome shotgun sequence
Length = 16169
Score = 63.9 bits (32), Expect = 8e-008
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 348 gccggggcagatccgccgcccggcaccgaacggtatgaactcgaagtctgcccccttgaa 407
||||||||| |||| ||| ||||| |||||||| | |||||||||||| | |||||||||
Sbjct: 9963 gccggggcacatcctccggccggccccgaacggcacgaactcgaagtccgtccccttgaa 10022
Query: 408 gtcc 411
||||
Sbjct: 10023 gtcc 10026
Score = 42.1 bits (21), Expect = 0.31
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 480 gatcgcccacgcgttcacgatcaccgtgatgcccgccggcacgtcgtacccgagcac 536
||||||||||||||| |||| |||| || | | ||||||||||||| ||||||||
Sbjct: 10098 gatcgcccacgcgttgacgagcaccatggcacgctccggcacgtcgtagccgagcac 10154
>gb|CH401216.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000053 genomic
scaffold, whole genome shotgun sequence
Length = 12033173
Score = 63.9 bits (32), Expect = 8e-008
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 348 gccggggcagatccgccgcccggcaccgaacggtatgaactcgaagtctgcccccttgaa 407
||||||||| |||| ||| ||||| |||||||| | |||||||||||| | |||||||||
Sbjct: 7116558 gccggggcacatcctccggccggccccgaacggcacgaactcgaagtccgtccccttgaa 7116617
Query: 408 gtcc 411
||||
Sbjct: 7116618 gtcc 7116621
Score = 63.9 bits (32), Expect = 8e-008
Identities = 65/76 (85%)
Strand = Plus / Minus
Query: 336 cccgaacgtcatgccggggcagatccgccgcccggcaccgaacggtatgaactcgaagtc 395
|||||||| ||| |||||||| |||||||| ||| | |||||||| | || |||||||||
Sbjct: 7006758 cccgaacgccatcccggggcacatccgccggccgccgccgaacggcaggagctcgaagtc 7006699
Query: 396 tgcccccttgaagtcc 411
|| ||||||||||||
Sbjct: 7006698 ggcgcccttgaagtcc 7006683
Score = 61.9 bits (31), Expect = 3e-007
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 477 gccgatcgcccacgcgttcacgatcaccgtgatgcccgccggcacgtcgta 527
||||||||||||| ||||||||| ||||||| ||||||||| ||||||||
Sbjct: 5484989 gccgatcgcccacacgttcacgaacaccgtggcgcccgccgggacgtcgta 5485039
Score = 54.0 bits (27), Expect = 8e-005
Identities = 48/55 (87%)
Strand = Plus / Minus
Query: 340 aacgtcatgccggggcagatccgccgcccggcaccgaacggtatgaactcgaagt 394
|||| ||| |||||||| |||||||||||||| |||||||| | || ||||||||
Sbjct: 6961003 aacgccatcccggggcacatccgccgcccggcgccgaacggaaggagctcgaagt 6960949
Score = 52.0 bits (26), Expect = 3e-004
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 334 agcccgaacgtcatgccggggcagatccgccgcccggcaccgaacggtatgaactcgaag 393
|||||||||| ||| || ||||| || |||||||| ||||| ||||| | ||||||||||
Sbjct: 7047960 agcccgaacgccatccctgggcacattcgccgcccagcaccaaacggcaggaactcgaag 7047901
Query: 394 tc 395
||
Sbjct: 7047900 tc 7047899
Score = 50.1 bits (25), Expect = 0.001
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 516 cggcacgtcgtacccgagcacctggcacg 544
|||||||||||| ||||||||||||||||
Sbjct: 6971344 cggcacgtcgtagccgagcacctggcacg 6971316
Score = 50.1 bits (25), Expect = 0.001
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 516 cggcacgtcgtacccgagcacctggcacg 544
|||||||||||| ||||||||||||||||
Sbjct: 6960800 cggcacgtcgtagccgagcacctggcacg 6960772
Score = 42.1 bits (21), Expect = 0.31
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 480 gatcgcccacgcgttcacgatcaccgtgatgcccgccggcacgtcgtacccgagcac 536
||||||||||||||| |||| |||| || | | ||||||||||||| ||||||||
Sbjct: 7116693 gatcgcccacgcgttgacgagcaccatggcacgctccggcacgtcgtagccgagcac 7116749
Score = 42.1 bits (21), Expect = 0.31
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 469 gggtccctgccgatcgcccacgcgttcac 497
|||||||||| |||||||||||||||||
Sbjct: 7059814 gggtccctgctaatcgcccacgcgttcac 7059842
Score = 42.1 bits (21), Expect = 0.31
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 516 cggcacgtcgtacccgagcacctggcacg 544
|||||||||||| ||||||||| ||||||
Sbjct: 7040224 cggcacgtcgtagccgagcacccggcacg 7040196
Score = 42.1 bits (21), Expect = 0.31
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 516 cggcacgtcgtacccgagcacctggcacg 544
|||||||||||| ||||||||| ||||||
Sbjct: 7006560 cggcacgtcgtagccgagcacccggcacg 7006532
Score = 42.1 bits (21), Expect = 0.31
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 348 gccggggcagatccgccgccc 368
|||||||||||||||||||||
Sbjct: 5484842 gccggggcagatccgccgccc 5484862
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 63.9 bits (32), Expect = 8e-008
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 348 gccggggcagatccgccgcccggcaccgaacggtatgaactcgaagtctgcccccttgaa 407
||||||||| |||| ||| ||||| |||||||| | |||||||||||| | |||||||||
Sbjct: 24815295 gccggggcacatcctccggccggccccgaacggcacgaactcgaagtccgtccccttgaa 24815354
Query: 408 gtcc 411
||||
Sbjct: 24815355 gtcc 24815358
Score = 63.9 bits (32), Expect = 8e-008
Identities = 65/76 (85%)
Strand = Plus / Minus
Query: 336 cccgaacgtcatgccggggcagatccgccgcccggcaccgaacggtatgaactcgaagtc 395
|||||||| ||| |||||||| |||||||| ||| | |||||||| | || |||||||||
Sbjct: 24705495 cccgaacgccatcccggggcacatccgccggccgccgccgaacggcaggagctcgaagtc 24705436
Query: 396 tgcccccttgaagtcc 411
|| ||||||||||||
Sbjct: 24705435 ggcgcccttgaagtcc 24705420
Score = 61.9 bits (31), Expect = 3e-007
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 477 gccgatcgcccacgcgttcacgatcaccgtgatgcccgccggcacgtcgta 527
||||||||||||| ||||||||| ||||||| ||||||||| ||||||||
Sbjct: 23183726 gccgatcgcccacacgttcacgaacaccgtggcgcccgccgggacgtcgta 23183776
Score = 54.0 bits (27), Expect = 8e-005
Identities = 48/55 (87%)
Strand = Plus / Minus
Query: 340 aacgtcatgccggggcagatccgccgcccggcaccgaacggtatgaactcgaagt 394
|||| ||| |||||||| |||||||||||||| |||||||| | || ||||||||
Sbjct: 24659740 aacgccatcccggggcacatccgccgcccggcgccgaacggaaggagctcgaagt 24659686
Score = 52.0 bits (26), Expect = 3e-004
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 334 agcccgaacgtcatgccggggcagatccgccgcccggcaccgaacggtatgaactcgaag 393
|||||||||| ||| || ||||| || |||||||| ||||| ||||| | ||||||||||
Sbjct: 24746697 agcccgaacgccatccctgggcacattcgccgcccagcaccaaacggcaggaactcgaag 24746638
Query: 394 tc 395
||
Sbjct: 24746637 tc 24746636
Score = 50.1 bits (25), Expect = 0.001
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 516 cggcacgtcgtacccgagcacctggcacg 544
|||||||||||| ||||||||||||||||
Sbjct: 24670081 cggcacgtcgtagccgagcacctggcacg 24670053
Score = 50.1 bits (25), Expect = 0.001
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 516 cggcacgtcgtacccgagcacctggcacg 544
|||||||||||| ||||||||||||||||
Sbjct: 24659537 cggcacgtcgtagccgagcacctggcacg 24659509
Score = 48.1 bits (24), Expect = 0.005
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 345 catgccggggcagatccgccgcccggcaccgaacgg 380
||||||||||||||||| ||| ||||| ||||||||
Sbjct: 12516819 catgccggggcagatcctccggccggcgccgaacgg 12516854
Score = 46.1 bits (23), Expect = 0.020
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 364 cgcccggcaccgaacggtatgaactcgaagt 394
||||| |||||||| ||||||||||||||||
Sbjct: 16966171 cgcccagcaccgaatggtatgaactcgaagt 16966201
Score = 46.1 bits (23), Expect = 0.020
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 364 cgcccggcaccgaacggtatgaactcgaagt 394
||||| ||||| |||||||||||||||||||
Sbjct: 16758498 cgcccagcaccaaacggtatgaactcgaagt 16758468
Score = 46.1 bits (23), Expect = 0.020
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 346 atgccggggcagatccgccgcccggcaccgaacgg 380
|||||||||||| ||||||||||||| ||| ||||
Sbjct: 774249 atgccggggcagctccgccgcccggcgccggacgg 774215
Score = 42.1 bits (21), Expect = 0.31
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 480 gatcgcccacgcgttcacgatcaccgtgatgcccgccggcacgtcgtacccgagcac 536
||||||||||||||| |||| |||| || | | ||||||||||||| ||||||||
Sbjct: 24815430 gatcgcccacgcgttgacgagcaccatggcacgctccggcacgtcgtagccgagcac 24815486
Score = 42.1 bits (21), Expect = 0.31
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 469 gggtccctgccgatcgcccacgcgttcac 497
|||||||||| |||||||||||||||||
Sbjct: 24758551 gggtccctgctaatcgcccacgcgttcac 24758579
Score = 42.1 bits (21), Expect = 0.31
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 516 cggcacgtcgtacccgagcacctggcacg 544
|||||||||||| ||||||||| ||||||
Sbjct: 24738961 cggcacgtcgtagccgagcacccggcacg 24738933
Score = 42.1 bits (21), Expect = 0.31
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 516 cggcacgtcgtacccgagcacctggcacg 544
|||||||||||| ||||||||| ||||||
Sbjct: 24705297 cggcacgtcgtagccgagcacccggcacg 24705269
Score = 42.1 bits (21), Expect = 0.31
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 348 gccggggcagatccgccgccc 368
|||||||||||||||||||||
Sbjct: 23183579 gccggggcagatccgccgccc 23183599
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 63.9 bits (32), Expect = 8e-008
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 348 gccggggcagatccgccgcccggcaccgaacggtatgaactcgaagtctgcccccttgaa 407
||||||||| |||| ||| ||||| |||||||| | |||||||||||| | |||||||||
Sbjct: 25776354 gccggggcacatcctccggccggccccgaacggcacgaactcgaagtccgtccccttgaa 25776413
Query: 408 gtcc 411
||||
Sbjct: 25776414 gtcc 25776417
Score = 63.9 bits (32), Expect = 8e-008
Identities = 65/76 (85%)
Strand = Plus / Minus
Query: 336 cccgaacgtcatgccggggcagatccgccgcccggcaccgaacggtatgaactcgaagtc 395
|||||||| ||| |||||||| |||||||| ||| | |||||||| | || |||||||||
Sbjct: 25690232 cccgaacgccatcccggggcacatccgccggccgccgccgaacggcaggagctcgaagtc 25690173
Query: 396 tgcccccttgaagtcc 411
|| ||||||||||||
Sbjct: 25690172 ggcgcccttgaagtcc 25690157
Score = 61.9 bits (31), Expect = 3e-007
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 477 gccgatcgcccacgcgttcacgatcaccgtgatgcccgccggcacgtcgta 527
||||||||||||| ||||||||| ||||||| ||||||||| ||||||||
Sbjct: 24148767 gccgatcgcccacacgttcacgaacaccgtggcgcccgccgggacgtcgta 24148817
Score = 54.0 bits (27), Expect = 8e-005
Identities = 48/55 (87%)
Strand = Plus / Minus
Query: 340 aacgtcatgccggggcagatccgccgcccggcaccgaacggtatgaactcgaagt 394
|||| ||| |||||||| |||||||||||||| |||||||| | || ||||||||
Sbjct: 25645213 aacgccatcccggggcacatccgccgcccggcgccgaacggaaggagctcgaagt 25645159
Score = 52.0 bits (26), Expect = 3e-004
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 334 agcccgaacgtcatgccggggcagatccgccgcccggcaccgaacggtatgaactcgaag 393
|||||||||| ||| || ||||| || |||||||| ||||| ||||| | ||||||||||
Sbjct: 25710797 agcccgaacgccatccctgggcacattcgccgcccagcaccaaacggcaggaactcgaag 25710738
Query: 394 tc 395
||
Sbjct: 25710737 tc 25710736
Score = 50.1 bits (25), Expect = 0.001
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 516 cggcacgtcgtacccgagcacctggcacg 544
|||||||||||| ||||||||||||||||
Sbjct: 25654126 cggcacgtcgtagccgagcacctggcacg 25654098
Score = 50.1 bits (25), Expect = 0.001
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 516 cggcacgtcgtacccgagcacctggcacg 544
|||||||||||| ||||||||||||||||
Sbjct: 25645010 cggcacgtcgtagccgagcacctggcacg 25644982
Score = 48.1 bits (24), Expect = 0.005
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 345 catgccggggcagatccgccgcccggcaccgaacgg 380
||||||||||||||||| ||| ||||| ||||||||
Sbjct: 12810528 catgccggggcagatcctccggccggcgccgaacgg 12810563
Score = 46.1 bits (23), Expect = 0.020
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 364 cgcccggcaccgaacggtatgaactcgaagt 394
||||| |||||||| ||||||||||||||||
Sbjct: 17412723 cgcccagcaccgaatggtatgaactcgaagt 17412753
Score = 46.1 bits (23), Expect = 0.020
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 364 cgcccggcaccgaacggtatgaactcgaagt 394
||||| ||||| |||||||||||||||||||
Sbjct: 17209999 cgcccagcaccaaacggtatgaactcgaagt 17209969
Score = 42.1 bits (21), Expect = 0.31
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 480 gatcgcccacgcgttcacgatcaccgtgatgcccgccggcacgtcgtacccgagcac 536
||||||||||||||| |||| |||| || | | ||||||||||||| ||||||||
Sbjct: 25776489 gatcgcccacgcgttgacgagcaccatggcacgctccggcacgtcgtagccgagcac 25776545
Score = 42.1 bits (21), Expect = 0.31
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 469 gggtccctgccgatcgcccacgcgttcac 497
|||||||||| |||||||||||||||||
Sbjct: 25721889 gggtccctgctaatcgcccacgcgttcac 25721917
Score = 42.1 bits (21), Expect = 0.31
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 516 cggcacgtcgtacccgagcacctggcacg 544
|||||||||||| ||||||||| ||||||
Sbjct: 25703061 cggcacgtcgtagccgagcacccggcacg 25703033
Score = 42.1 bits (21), Expect = 0.31
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 516 cggcacgtcgtacccgagcacctggcacg 544
|||||||||||| ||||||||| ||||||
Sbjct: 25690034 cggcacgtcgtagccgagcacccggcacg 25690006
Score = 42.1 bits (21), Expect = 0.31
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 348 gccggggcagatccgccgccc 368
|||||||||||||||||||||
Sbjct: 24148620 gccggggcagatccgccgccc 24148640
>dbj|AP003711.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0417G12
Length = 163568
Score = 61.9 bits (31), Expect = 3e-007
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 477 gccgatcgcccacgcgttcacgatcaccgtgatgcccgccggcacgtcgta 527
||||||||||||| ||||||||| ||||||| ||||||||| ||||||||
Sbjct: 82225 gccgatcgcccacacgttcacgaacaccgtggcgcccgccgggacgtcgta 82275
Score = 42.1 bits (21), Expect = 0.31
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 348 gccggggcagatccgccgccc 368
|||||||||||||||||||||
Sbjct: 82078 gccggggcagatccgccgccc 82098
>gb|AACV01014544.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014544, whole
genome shotgun sequence
Length = 22890
Score = 61.9 bits (31), Expect = 3e-007
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 477 gccgatcgcccacgcgttcacgatcaccgtgatgcccgccggcacgtcgta 527
||||||||||||| ||||||||| ||||||| ||||||||| ||||||||
Sbjct: 4416 gccgatcgcccacacgttcacgaacaccgtggcgcccgccgggacgtcgta 4366
Score = 42.1 bits (21), Expect = 0.31
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 348 gccggggcagatccgccgccc 368
|||||||||||||||||||||
Sbjct: 4563 gccggggcagatccgccgccc 4543
>gb|CB647244.1|CB647244 OSJNEb10B13.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb10B13 3', mRNA sequence
Length = 795
Score = 54.0 bits (27), Expect = 8e-005
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 466 gccgggtccctgccgatcgcccacgcgttcacgatcacc 504
|||| |||||| |||||||||||||||||||| ||||||
Sbjct: 646 gccgcgtccctcccgatcgcccacgcgttcaccatcacc 684
Score = 50.1 bits (25), Expect = 0.001
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 346 atgccggggcagatccgccgcccggcaccgaacggtatgaactcgaagt 394
||||||||||||||||||||||| | |||||||| | || ||||||||
Sbjct: 526 atgccggggcagatccgccgccccgacccgaacggcaggagctcgaagt 574
>gb|CB652379.1|CB652379 OSJNEc02D15.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc02D15 3', mRNA sequence
Length = 718
Score = 54.0 bits (27), Expect = 8e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 346 atgccggggcagatccgccgcccggcaccgaacgg 380
|||||||||||||||||||| ||||| ||||||||
Sbjct: 440 atgccggggcagatccgccggccggcgccgaacgg 474
Score = 46.1 bits (23), Expect = 0.020
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 469 gggtccctgccgatcgcccacgcgttcacga 499
|||||||| ||||||||||||||||| ||||
Sbjct: 569 gggtccctcccgatcgcccacgcgttgacga 599
>gb|CB652381.1|CB652381 OSJNEc02D16.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc02D16 3', mRNA sequence
Length = 795
Score = 54.0 bits (27), Expect = 8e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 346 atgccggggcagatccgccgcccggcaccgaacgg 380
|||||||||||||||||||| ||||| ||||||||
Sbjct: 461 atgccggggcagatccgccggccggcgccgaacgg 495
Score = 46.1 bits (23), Expect = 0.020
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 469 gggtccctgccgatcgcccacgcgttcacga 499
|||||||| ||||||||||||||||| ||||
Sbjct: 590 gggtccctcccgatcgcccacgcgttgacga 620
>gb|CB652383.1|CB652383 OSJNEc02D17.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc02D17 3', mRNA sequence
Length = 790
Score = 54.0 bits (27), Expect = 8e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 346 atgccggggcagatccgccgcccggcaccgaacgg 380
|||||||||||||||||||| ||||| ||||||||
Sbjct: 455 atgccggggcagatccgccggccggcgccgaacgg 489
Score = 46.1 bits (23), Expect = 0.020
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 469 gggtccctgccgatcgcccacgcgttcacga 499
|||||||| ||||||||||||||||| ||||
Sbjct: 584 gggtccctcccgatcgcccacgcgttgacga 614
>gb|CB655043.1|CB655043 OSJNEc08B07.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc08B07 3', mRNA sequence
Length = 815
Score = 54.0 bits (27), Expect = 8e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 346 atgccggggcagatccgccgcccggcaccgaacgg 380
|||||||||||||||||||| ||||| ||||||||
Sbjct: 495 atgccggggcagatccgccggccggcgccgaacgg 529
Score = 46.1 bits (23), Expect = 0.020
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 469 gggtccctgccgatcgcccacgcgttcacga 499
|||||||| ||||||||||||||||| ||||
Sbjct: 624 gggtccctcccgatcgcccacgcgttgacga 654
>gb|CB659217.1|CB659217 OSJNEc16A08.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc16A08 5', mRNA sequence
Length = 762
Score = 54.0 bits (27), Expect = 8e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 346 atgccggggcagatccgccgcccggcaccgaacgg 380
|||||||||||||||||||| ||||| ||||||||
Sbjct: 348 atgccggggcagatccgccggccggcgccgaacgg 382
Score = 46.1 bits (23), Expect = 0.020
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 469 gggtccctgccgatcgcccacgcgttcacga 499
|||||||| ||||||||||||||||| ||||
Sbjct: 477 gggtccctcccgatcgcccacgcgttgacga 507
>gb|CB666330.1|CB666330 OSJNEd13D02.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd13D02 3', mRNA sequence
Length = 782
Score = 54.0 bits (27), Expect = 8e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 346 atgccggggcagatccgccgcccggcaccgaacgg 380
|||||||||||||||||||| ||||| ||||||||
Sbjct: 364 atgccggggcagatccgccggccggcgccgaacgg 398
Score = 46.1 bits (23), Expect = 0.020
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 469 gggtccctgccgatcgcccacgcgttcacga 499
|||||||| ||||||||||||||||| ||||
Sbjct: 493 gggtccctcccgatcgcccacgcgttgacga 523
>gb|CB675220.1|CB675220 OSJNEe10M22.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe10M22 3', mRNA sequence
Length = 794
Score = 54.0 bits (27), Expect = 8e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 346 atgccggggcagatccgccgcccggcaccgaacgg 380
|||||||||||||||||||| ||||| ||||||||
Sbjct: 349 atgccggggcagatccgccggccggcgccgaacgg 383
Score = 46.1 bits (23), Expect = 0.020
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 469 gggtccctgccgatcgcccacgcgttcacga 499
|||||||| ||||||||||||||||| ||||
Sbjct: 478 gggtccctcccgatcgcccacgcgttgacga 508
>dbj|AK060486.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-E10, full
insert sequence
Length = 1815
Score = 54.0 bits (27), Expect = 8e-005
Identities = 48/55 (87%)
Strand = Plus / Minus
Query: 340 aacgtcatgccggggcagatccgccgcccggcaccgaacggtatgaactcgaagt 394
|||| ||| |||||||| |||||||||||||| |||||||| | || ||||||||
Sbjct: 1440 aacgccatcccggggcacatccgccgcccggcgccgaacggaaggagctcgaagt 1386
Score = 50.1 bits (25), Expect = 0.001
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 516 cggcacgtcgtacccgagcacctggcacg 544
|||||||||||| ||||||||||||||||
Sbjct: 1237 cggcacgtcgtagccgagcacctggcacg 1209
>dbj|AK106068.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-H02, full
insert sequence
Length = 1775
Score = 54.0 bits (27), Expect = 8e-005
Identities = 48/55 (87%)
Strand = Plus / Minus
Query: 340 aacgtcatgccggggcagatccgccgcccggcaccgaacggtatgaactcgaagt 394
|||| ||| |||||||| |||||||||||||| |||||||| | || ||||||||
Sbjct: 1426 aacgccatcccggggcacatccgccgcccggcgccgaacggaaggagctcgaagt 1372
Score = 50.1 bits (25), Expect = 0.001
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 516 cggcacgtcgtacccgagcacctggcacg 544
|||||||||||| ||||||||||||||||
Sbjct: 1223 cggcacgtcgtagccgagcacctggcacg 1195
>dbj|AK120444.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013099E24, full
insert sequence
Length = 1765
Score = 54.0 bits (27), Expect = 8e-005
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 346 atgccggggcagatccgccgcccggcaccgaacgg 380
|||||||||||||||||||| ||||| ||||||||
Sbjct: 1391 atgccggggcagatccgccggccggcgccgaacgg 1357
Score = 46.1 bits (23), Expect = 0.020
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 469 gggtccctgccgatcgcccacgcgttcacga 499
|||||||| ||||||||||||||||| ||||
Sbjct: 1262 gggtccctcccgatcgcccacgcgttgacga 1232
>dbj|AK120674.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013161I12, full
insert sequence
Length = 1763
Score = 54.0 bits (27), Expect = 8e-005
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 346 atgccggggcagatccgccgcccggcaccgaacgg 380
|||||||||||||||||||| ||||| ||||||||
Sbjct: 1389 atgccggggcagatccgccggccggcgccgaacgg 1355
Score = 46.1 bits (23), Expect = 0.020
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 469 gggtccctgccgatcgcccacgcgttcacga 499
|||||||| ||||||||||||||||| ||||
Sbjct: 1260 gggtccctcccgatcgcccacgcgttgacga 1230
>gb|AC096688.4| Oryza sativa chromosome 3 BAC OSJNBa0015N08 genomic sequence,
complete sequence
Length = 145290
Score = 54.0 bits (27), Expect = 8e-005
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 466 gccgggtccctgccgatcgcccacgcgttcacgatcacc 504
|||| |||||| |||||||||||||||||||| ||||||
Sbjct: 9772 gccgcgtccctcccgatcgcccacgcgttcaccatcacc 9734
Score = 50.1 bits (25), Expect = 0.001
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 346 atgccggggcagatccgccgcccggcaccgaacggtatgaactcgaagt 394
||||||||||||||||||||||| | |||||||| | || ||||||||
Sbjct: 9892 atgccggggcagatccgccgccccgacccgaacggcaggagctcgaagt 9844
>gb|AC092559.4| Oryza sativa chromosome 3 BAC OSJNBb0096M04 genomic sequence, complete
sequence
Length = 133846
Score = 54.0 bits (27), Expect = 8e-005
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 466 gccgggtccctgccgatcgcccacgcgttcacgatcacc 504
|||| |||||| |||||||||||||||||||| ||||||
Sbjct: 10817 gccgcgtccctcccgatcgcccacgcgttcaccatcacc 10855
Score = 50.1 bits (25), Expect = 0.001
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 346 atgccggggcagatccgccgcccggcaccgaacggtatgaactcgaagt 394
||||||||||||||||||||||| | |||||||| | || ||||||||
Sbjct: 10697 atgccggggcagatccgccgccccgacccgaacggcaggagctcgaagt 10745
>dbj|AP005682.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
clone:OJ1531_B07
Length = 115245
Score = 54.0 bits (27), Expect = 8e-005
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 346 atgccggggcagatccgccgcccggcaccgaacgg 380
|||||||||||||||||||| ||||| ||||||||
Sbjct: 102516 atgccggggcagatccgccggccggcgccgaacgg 102482
Score = 46.1 bits (23), Expect = 0.020
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 469 gggtccctgccgatcgcccacgcgttcacga 499
|||||||| ||||||||||||||||| ||||
Sbjct: 102387 gggtccctcccgatcgcccacgcgttgacga 102357
>gb|AACV01008267.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg008267,
whole genome shotgun sequence
Length = 10401
Score = 54.0 bits (27), Expect = 8e-005
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 466 gccgggtccctgccgatcgcccacgcgttcacgatcacc 504
|||| |||||| |||||||||||||||||||| ||||||
Sbjct: 478 gccgcgtccctcccgatcgcccacgcgttcaccatcacc 516
Score = 50.1 bits (25), Expect = 0.001
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 346 atgccggggcagatccgccgcccggcaccgaacggtatgaactcgaagt 394
||||||||||||||||||||||| | |||||||| | || ||||||||
Sbjct: 358 atgccggggcagatccgccgccccgacccgaacggcaggagctcgaagt 406
>gb|AACV01014648.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014648, whole
genome shotgun sequence
Length = 9315
Score = 54.0 bits (27), Expect = 8e-005
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 340 aacgtcatgccggggcagatccgccgcccggcaccgaacggtatgaactcgaagt 394
|||| ||| |||||||| |||||||||||||| |||||||| | || ||||||||
Sbjct: 3427 aacgccatcccggggcacatccgccgcccggcgccgaacggaaggagctcgaagt 3481
Score = 50.1 bits (25), Expect = 0.001
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 516 cggcacgtcgtacccgagcacctggcacg 544
|||||||||||| ||||||||||||||||
Sbjct: 3630 cggcacgtcgtagccgagcacctggcacg 3658
>gb|AACV01020440.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg020440, whole
genome shotgun sequence
Length = 18560
Score = 54.0 bits (27), Expect = 8e-005
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 346 atgccggggcagatccgccgcccggcaccgaacgg 380
|||||||||||||||||||| ||||| ||||||||
Sbjct: 6565 atgccggggcagatccgccggccggcgccgaacgg 6531
Score = 46.1 bits (23), Expect = 0.020
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 469 gggtccctgccgatcgcccacgcgttcacga 499
|||||||| ||||||||||||||||| ||||
Sbjct: 6436 gggtccctcccgatcgcccacgcgttgacga 6406
>ref|NM_185174.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1584
Score = 54.0 bits (27), Expect = 8e-005
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 466 gccgggtccctgccgatcgcccacgcgttcacgatcacc 504
|||| |||||| |||||||||||||||||||| ||||||
Sbjct: 1289 gccgcgtccctcccgatcgcccacgcgttcaccatcacc 1251
Score = 50.1 bits (25), Expect = 0.001
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 346 atgccggggcagatccgccgcccggcaccgaacggtatgaactcgaagt 394
||||||||||||||||||||||| | |||||||| | || ||||||||
Sbjct: 1409 atgccggggcagatccgccgccccgacccgaacggcaggagctcgaagt 1361
>ref|XM_464379.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1557
Score = 54.0 bits (27), Expect = 8e-005
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 470 ggtccctgccgatcgcccacgcgttcacgatcacc 504
||||||| || ||||||||||||||||||||||||
Sbjct: 1249 ggtccctaccaatcgcccacgcgttcacgatcacc 1215
Score = 42.1 bits (21), Expect = 0.31
Identities = 54/65 (83%)
Strand = Plus / Minus
Query: 331 gccagcccgaacgtcatgccggggcagatccgccgcccggcaccgaacggtatgaactcg 390
|||| |||||| || ||||| ||||| |||| || || || || |||||||||||||||
Sbjct: 1388 gccatcccgaatgtgatgccagggcatatccttcgtccagctccaaacggtatgaactcg 1329
Query: 391 aagtc 395
|||||
Sbjct: 1328 aagtc 1324
>ref|NT_079914.2| Oryza sativa (japonica cultivar-group)
Length = 1404373
Score = 54.0 bits (27), Expect = 8e-005
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 466 gccgggtccctgccgatcgcccacgcgttcacgatcacc 504
|||| |||||| |||||||||||||||||||| ||||||
Sbjct: 778512 gccgcgtccctcccgatcgcccacgcgttcaccatcacc 778474
Score = 50.1 bits (25), Expect = 0.001
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 346 atgccggggcagatccgccgcccggcaccgaacggtatgaactcgaagt 394
||||||||||||||||||||||| | |||||||| | || ||||||||
Sbjct: 778632 atgccggggcagatccgccgccccgacccgaacggcaggagctcgaagt 778584
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 680,340
Number of Sequences: 438736
Number of extensions: 680340
Number of successful extensions: 19772
Number of sequences better than 0.5: 150
Number of HSP's better than 0.5 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16966
Number of HSP's gapped (non-prelim): 2800
length of query: 554
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 533
effective length of database: 2,791,206,460
effective search space: 1487713043180
effective search space used: 1487713043180
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)