BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3713493.2.1
(696 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB642756.1|CB642756 OSJNEb03B18.r OSJNEb Oryza sativa (j... 153 2e-034
gb|CB674476.1|CB674476 OSJNEe09I19.r OSJNEe Oryza sativa (j... 153 2e-034
dbj|AK106527.1| Oryza sativa (japonica cultivar-group) cDNA... 153 2e-034
dbj|AK121728.1| Oryza sativa (japonica cultivar-group) cDNA... 153 2e-034
gb|AACV01005523.1| Oryza sativa (japonica cultivar-group) c... 153 2e-034
ref|XM_468091.1| Oryza sativa (japonica cultivar-group), mRNA 153 2e-034
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 153 2e-034
dbj|AP004846.3| Oryza sativa (japonica cultivar-group) geno... 153 2e-034
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 153 2e-034
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 153 2e-034
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 153 2e-034
gb|AU097292.1|AU097292 AU097292 Rice shoot Oryza sativa (ja... 123 1e-025
dbj|AK110037.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.39
>gb|CB642756.1|CB642756 OSJNEb03B18.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb03B18 3', mRNA sequence
Length = 831
Score = 153 bits (77), Expect = 2e-034
Identities = 191/229 (83%)
Strand = Plus / Plus
Query: 453 ctacatggctgctgctccaccgttggacggccaggtcacggcaatggggctcgtgacgtc 512
|||||||| |||||||| ||||| |||||||| |||||||| |||||||| ||||||||
Sbjct: 262 ctacatggatgctgctcggccgttcgacggccatgtcacggcgatggggctagtgacgtc 321
Query: 513 gtgcgcgccgtcgctccaggtgatggatccgaacgagtagctggaatccacgatcaccgg 572
|||| |||||||||||||||||| || ||||| | ||| || || |||||||||||
Sbjct: 322 gtgcacgccgtcgctccaggtgaccgacccgaaggtgtactcggtgtcgacgatcaccgg 381
Query: 573 gttgcctgacactgcgatggtgatttcgtatcccaggctctgctgcttcccgtcgaacgc 632
||| || ||| | ||||||||||| ||||| ||||||||| || || |||||||| |
Sbjct: 382 gttacccgacgcggcgatggtgatgtcgtaggacaggctctggtggctctcgtcgaacac 441
Query: 633 gagcttgctcggggtcaccgtgacatccacgccgtacgggctggcgatc 681
|||||||| ||| |||||||||||||||| ||| |||||||| |||||
Sbjct: 442 cagcttgcttgggctcaccgtgacatccacaccggacgggctgtcgatc 490
>gb|CB674476.1|CB674476 OSJNEe09I19.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe09I19 3', mRNA sequence
Length = 819
Score = 153 bits (77), Expect = 2e-034
Identities = 191/229 (83%)
Strand = Plus / Plus
Query: 453 ctacatggctgctgctccaccgttggacggccaggtcacggcaatggggctcgtgacgtc 512
|||||||| |||||||| ||||| |||||||| |||||||| |||||||| ||||||||
Sbjct: 256 ctacatggatgctgctcggccgttcgacggccatgtcacggcgatggggctagtgacgtc 315
Query: 513 gtgcgcgccgtcgctccaggtgatggatccgaacgagtagctggaatccacgatcaccgg 572
|||| |||||||||||||||||| || ||||| | ||| || || |||||||||||
Sbjct: 316 gtgcacgccgtcgctccaggtgaccgacccgaaggtgtactcggtgtcgacgatcaccgg 375
Query: 573 gttgcctgacactgcgatggtgatttcgtatcccaggctctgctgcttcccgtcgaacgc 632
||| || ||| | ||||||||||| ||||| ||||||||| || || |||||||| |
Sbjct: 376 gttacccgacgcggcgatggtgatgtcgtaggacaggctctggtggctctcgtcgaacac 435
Query: 633 gagcttgctcggggtcaccgtgacatccacgccgtacgggctggcgatc 681
|||||||| ||| |||||||||||||||| ||| |||||||| |||||
Sbjct: 436 cagcttgcttgggctcaccgtgacatccacaccggacgggctgtcgatc 484
>dbj|AK106527.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-107-F01, full
insert sequence
Length = 2648
Score = 153 bits (77), Expect = 2e-034
Identities = 191/229 (83%)
Strand = Plus / Minus
Query: 453 ctacatggctgctgctccaccgttggacggccaggtcacggcaatggggctcgtgacgtc 512
|||||||| |||||||| ||||| |||||||| |||||||| |||||||| ||||||||
Sbjct: 2322 ctacatggatgctgctcggccgttcgacggccatgtcacggcgatggggctagtgacgtc 2263
Query: 513 gtgcgcgccgtcgctccaggtgatggatccgaacgagtagctggaatccacgatcaccgg 572
|||| |||||||||||||||||| || ||||| | ||| || || |||||||||||
Sbjct: 2262 gtgcacgccgtcgctccaggtgaccgacccgaaggtgtactcggtgtcgacgatcaccgg 2203
Query: 573 gttgcctgacactgcgatggtgatttcgtatcccaggctctgctgcttcccgtcgaacgc 632
||| || ||| | ||||||||||| ||||| ||||||||| || || |||||||| |
Sbjct: 2202 gttacccgacgcggcgatggtgatgtcgtaggacaggctctggtggctctcgtcgaacac 2143
Query: 633 gagcttgctcggggtcaccgtgacatccacgccgtacgggctggcgatc 681
|||||||| ||| |||||||||||||||| ||| |||||||| |||||
Sbjct: 2142 cagcttgcttgggctcaccgtgacatccacaccggacgggctgtcgatc 2094
>dbj|AK121728.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033082C22, full
insert sequence
Length = 2653
Score = 153 bits (77), Expect = 2e-034
Identities = 191/229 (83%)
Strand = Plus / Minus
Query: 453 ctacatggctgctgctccaccgttggacggccaggtcacggcaatggggctcgtgacgtc 512
|||||||| |||||||| ||||| |||||||| |||||||| |||||||| ||||||||
Sbjct: 2419 ctacatggatgctgctcggccgttcgacggccatgtcacggcgatggggctagtgacgtc 2360
Query: 513 gtgcgcgccgtcgctccaggtgatggatccgaacgagtagctggaatccacgatcaccgg 572
|||| |||||||||||||||||| || ||||| | ||| || || |||||||||||
Sbjct: 2359 gtgcacgccgtcgctccaggtgaccgacccgaaggtgtactcggtgtcgacgatcaccgg 2300
Query: 573 gttgcctgacactgcgatggtgatttcgtatcccaggctctgctgcttcccgtcgaacgc 632
||| || ||| | ||||||||||| ||||| ||||||||| || || |||||||| |
Sbjct: 2299 gttacccgacgcggcgatggtgatgtcgtaggacaggctctggtggctctcgtcgaacac 2240
Query: 633 gagcttgctcggggtcaccgtgacatccacgccgtacgggctggcgatc 681
|||||||| ||| |||||||||||||||| ||| |||||||| |||||
Sbjct: 2239 cagcttgcttgggctcaccgtgacatccacaccggacgggctgtcgatc 2191
>gb|AACV01005523.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005523, whole
genome shotgun sequence
Length = 45353
Score = 153 bits (77), Expect = 2e-034
Identities = 191/229 (83%)
Strand = Plus / Minus
Query: 453 ctacatggctgctgctccaccgttggacggccaggtcacggcaatggggctcgtgacgtc 512
|||||||| |||||||| ||||| |||||||| |||||||| |||||||| ||||||||
Sbjct: 21566 ctacatggatgctgctcggccgttcgacggccatgtcacggcgatggggctagtgacgtc 21507
Query: 513 gtgcgcgccgtcgctccaggtgatggatccgaacgagtagctggaatccacgatcaccgg 572
|||| |||||||||||||||||| || ||||| | ||| || || |||||||||||
Sbjct: 21506 gtgcacgccgtcgctccaggtgaccgacccgaaggtgtactcggtgtcgacgatcaccgg 21447
Query: 573 gttgcctgacactgcgatggtgatttcgtatcccaggctctgctgcttcccgtcgaacgc 632
||| || ||| | ||||||||||| ||||| ||||||||| || || |||||||| |
Sbjct: 21446 gttacccgacgcggcgatggtgatgtcgtaggacaggctctggtggctctcgtcgaacac 21387
Query: 633 gagcttgctcggggtcaccgtgacatccacgccgtacgggctggcgatc 681
|||||||| ||| |||||||||||||||| ||| |||||||| |||||
Sbjct: 21386 cagcttgcttgggctcaccgtgacatccacaccggacgggctgtcgatc 21338
Score = 56.0 bits (28), Expect = 3e-005
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 480 cggccaggtcacggcaatggggctcgtgacgtcgtgcgcgccgtcgctccag 531
||||||||| ||||| ||||||||| | || | |||||||||||||||||||
Sbjct: 23407 cggccaggtgacggcgatggggctcctcaccttgtgcgcgccgtcgctccag 23458
>ref|XM_468091.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2653
Score = 153 bits (77), Expect = 2e-034
Identities = 191/229 (83%)
Strand = Plus / Minus
Query: 453 ctacatggctgctgctccaccgttggacggccaggtcacggcaatggggctcgtgacgtc 512
|||||||| |||||||| ||||| |||||||| |||||||| |||||||| ||||||||
Sbjct: 2419 ctacatggatgctgctcggccgttcgacggccatgtcacggcgatggggctagtgacgtc 2360
Query: 513 gtgcgcgccgtcgctccaggtgatggatccgaacgagtagctggaatccacgatcaccgg 572
|||| |||||||||||||||||| || ||||| | ||| || || |||||||||||
Sbjct: 2359 gtgcacgccgtcgctccaggtgaccgacccgaaggtgtactcggtgtcgacgatcaccgg 2300
Query: 573 gttgcctgacactgcgatggtgatttcgtatcccaggctctgctgcttcccgtcgaacgc 632
||| || ||| | ||||||||||| ||||| ||||||||| || || |||||||| |
Sbjct: 2299 gttacccgacgcggcgatggtgatgtcgtaggacaggctctggtggctctcgtcgaacac 2240
Query: 633 gagcttgctcggggtcaccgtgacatccacgccgtacgggctggcgatc 681
|||||||| ||| |||||||||||||||| ||| |||||||| |||||
Sbjct: 2239 cagcttgcttgggctcaccgtgacatccacaccggacgggctgtcgatc 2191
>ref|NT_107181.1| Oryza sativa (japonica cultivar-group)
Length = 9248309
Score = 153 bits (77), Expect = 2e-034
Identities = 191/229 (83%)
Strand = Plus / Plus
Query: 453 ctacatggctgctgctccaccgttggacggccaggtcacggcaatggggctcgtgacgtc 512
|||||||| |||||||| ||||| |||||||| |||||||| |||||||| ||||||||
Sbjct: 8168920 ctacatggatgctgctcggccgttcgacggccatgtcacggcgatggggctagtgacgtc 8168979
Query: 513 gtgcgcgccgtcgctccaggtgatggatccgaacgagtagctggaatccacgatcaccgg 572
|||| |||||||||||||||||| || ||||| | ||| || || |||||||||||
Sbjct: 8168980 gtgcacgccgtcgctccaggtgaccgacccgaaggtgtactcggtgtcgacgatcaccgg 8169039
Query: 573 gttgcctgacactgcgatggtgatttcgtatcccaggctctgctgcttcccgtcgaacgc 632
||| || ||| | ||||||||||| ||||| ||||||||| || || |||||||| |
Sbjct: 8169040 gttacccgacgcggcgatggtgatgtcgtaggacaggctctggtggctctcgtcgaacac 8169099
Query: 633 gagcttgctcggggtcaccgtgacatccacgccgtacgggctggcgatc 681
|||||||| ||| |||||||||||||||| ||| |||||||| |||||
Sbjct: 8169100 cagcttgcttgggctcaccgtgacatccacaccggacgggctgtcgatc 8169148
Score = 56.0 bits (28), Expect = 3e-005
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 480 cggccaggtcacggcaatggggctcgtgacgtcgtgcgcgccgtcgctccag 531
||||||||| ||||| ||||||||| | || | |||||||||||||||||||
Sbjct: 8167079 cggccaggtgacggcgatggggctcctcaccttgtgcgcgccgtcgctccag 8167028
>dbj|AP004846.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1293_A01
Length = 139121
Score = 153 bits (77), Expect = 2e-034
Identities = 191/229 (83%)
Strand = Plus / Plus
Query: 453 ctacatggctgctgctccaccgttggacggccaggtcacggcaatggggctcgtgacgtc 512
|||||||| |||||||| ||||| |||||||| |||||||| |||||||| ||||||||
Sbjct: 49861 ctacatggatgctgctcggccgttcgacggccatgtcacggcgatggggctagtgacgtc 49920
Query: 513 gtgcgcgccgtcgctccaggtgatggatccgaacgagtagctggaatccacgatcaccgg 572
|||| |||||||||||||||||| || ||||| | ||| || || |||||||||||
Sbjct: 49921 gtgcacgccgtcgctccaggtgaccgacccgaaggtgtactcggtgtcgacgatcaccgg 49980
Query: 573 gttgcctgacactgcgatggtgatttcgtatcccaggctctgctgcttcccgtcgaacgc 632
||| || ||| | ||||||||||| ||||| ||||||||| || || |||||||| |
Sbjct: 49981 gttacccgacgcggcgatggtgatgtcgtaggacaggctctggtggctctcgtcgaacac 50040
Query: 633 gagcttgctcggggtcaccgtgacatccacgccgtacgggctggcgatc 681
|||||||| ||| |||||||||||||||| ||| |||||||| |||||
Sbjct: 50041 cagcttgcttgggctcaccgtgacatccacaccggacgggctgtcgatc 50089
Score = 56.0 bits (28), Expect = 3e-005
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 480 cggccaggtcacggcaatggggctcgtgacgtcgtgcgcgccgtcgctccag 531
||||||||| ||||| ||||||||| | || | |||||||||||||||||||
Sbjct: 48020 cggccaggtgacggcgatggggctcctcaccttgtgcgcgccgtcgctccag 47969
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 153 bits (77), Expect = 2e-034
Identities = 191/229 (83%)
Strand = Plus / Plus
Query: 453 ctacatggctgctgctccaccgttggacggccaggtcacggcaatggggctcgtgacgtc 512
|||||||| |||||||| ||||| |||||||| |||||||| |||||||| ||||||||
Sbjct: 19643552 ctacatggatgctgctcggccgttcgacggccatgtcacggcgatggggctagtgacgtc 19643611
Query: 513 gtgcgcgccgtcgctccaggtgatggatccgaacgagtagctggaatccacgatcaccgg 572
|||| |||||||||||||||||| || ||||| | ||| || || |||||||||||
Sbjct: 19643612 gtgcacgccgtcgctccaggtgaccgacccgaaggtgtactcggtgtcgacgatcaccgg 19643671
Query: 573 gttgcctgacactgcgatggtgatttcgtatcccaggctctgctgcttcccgtcgaacgc 632
||| || ||| | ||||||||||| ||||| ||||||||| || || |||||||| |
Sbjct: 19643672 gttacccgacgcggcgatggtgatgtcgtaggacaggctctggtggctctcgtcgaacac 19643731
Query: 633 gagcttgctcggggtcaccgtgacatccacgccgtacgggctggcgatc 681
|||||||| ||| |||||||||||||||| ||| |||||||| |||||
Sbjct: 19643732 cagcttgcttgggctcaccgtgacatccacaccggacgggctgtcgatc 19643780
Score = 56.0 bits (28), Expect = 3e-005
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 480 cggccaggtcacggcaatggggctcgtgacgtcgtgcgcgccgtcgctccag 531
||||||||| ||||| ||||||||| | || | |||||||||||||||||||
Sbjct: 19641711 cggccaggtgacggcgatggggctcctcaccttgtgcgcgccgtcgctccag 19641660
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 153 bits (77), Expect = 2e-034
Identities = 191/229 (83%)
Strand = Plus / Plus
Query: 453 ctacatggctgctgctccaccgttggacggccaggtcacggcaatggggctcgtgacgtc 512
|||||||| |||||||| ||||| |||||||| |||||||| |||||||| ||||||||
Sbjct: 33096616 ctacatggatgctgctcggccgttcgacggccatgtcacggcgatggggctagtgacgtc 33096675
Query: 513 gtgcgcgccgtcgctccaggtgatggatccgaacgagtagctggaatccacgatcaccgg 572
|||| |||||||||||||||||| || ||||| | ||| || || |||||||||||
Sbjct: 33096676 gtgcacgccgtcgctccaggtgaccgacccgaaggtgtactcggtgtcgacgatcaccgg 33096735
Query: 573 gttgcctgacactgcgatggtgatttcgtatcccaggctctgctgcttcccgtcgaacgc 632
||| || ||| | ||||||||||| ||||| ||||||||| || || |||||||| |
Sbjct: 33096736 gttacccgacgcggcgatggtgatgtcgtaggacaggctctggtggctctcgtcgaacac 33096795
Query: 633 gagcttgctcggggtcaccgtgacatccacgccgtacgggctggcgatc 681
|||||||| ||| |||||||||||||||| ||| |||||||| |||||
Sbjct: 33096796 cagcttgcttgggctcaccgtgacatccacaccggacgggctgtcgatc 33096844
Score = 56.0 bits (28), Expect = 3e-005
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 480 cggccaggtcacggcaatggggctcgtgacgtcgtgcgcgccgtcgctccag 531
||||||||| ||||| ||||||||| | || | |||||||||||||||||||
Sbjct: 33094775 cggccaggtgacggcgatggggctcctcaccttgtgcgcgccgtcgctccag 33094724
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 153 bits (77), Expect = 2e-034
Identities = 191/229 (83%)
Strand = Plus / Plus
Query: 453 ctacatggctgctgctccaccgttggacggccaggtcacggcaatggggctcgtgacgtc 512
|||||||| |||||||| ||||| |||||||| |||||||| |||||||| ||||||||
Sbjct: 33003921 ctacatggatgctgctcggccgttcgacggccatgtcacggcgatggggctagtgacgtc 33003980
Query: 513 gtgcgcgccgtcgctccaggtgatggatccgaacgagtagctggaatccacgatcaccgg 572
|||| |||||||||||||||||| || ||||| | ||| || || |||||||||||
Sbjct: 33003981 gtgcacgccgtcgctccaggtgaccgacccgaaggtgtactcggtgtcgacgatcaccgg 33004040
Query: 573 gttgcctgacactgcgatggtgatttcgtatcccaggctctgctgcttcccgtcgaacgc 632
||| || ||| | ||||||||||| ||||| ||||||||| || || |||||||| |
Sbjct: 33004041 gttacccgacgcggcgatggtgatgtcgtaggacaggctctggtggctctcgtcgaacac 33004100
Query: 633 gagcttgctcggggtcaccgtgacatccacgccgtacgggctggcgatc 681
|||||||| ||| |||||||||||||||| ||| |||||||| |||||
Sbjct: 33004101 cagcttgcttgggctcaccgtgacatccacaccggacgggctgtcgatc 33004149
Score = 56.0 bits (28), Expect = 3e-005
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 480 cggccaggtcacggcaatggggctcgtgacgtcgtgcgcgccgtcgctccag 531
||||||||| ||||| ||||||||| | || | |||||||||||||||||||
Sbjct: 33002080 cggccaggtgacggcgatggggctcctcaccttgtgcgcgccgtcgctccag 33002029
>gb|AU097292.1|AU097292 AU097292 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S3516, mRNA sequence
Length = 466
Score = 123 bits (62), Expect = 1e-025
Identities = 190/230 (82%), Gaps = 2/230 (0%)
Strand = Plus / Minus
Query: 453 ctacatggctgctgctccaccgttggacggccaggtcacggcaatggggctcgtgacgtc 512
|||||||| |||||||| ||||| |||||||| |||||||| |||||||| ||||||||
Sbjct: 239 ctacatggatgctgctcggccgttcgacggccatgtcacggcgatggggctagtgacgtc 180
Query: 513 gtgcgcgccgtcgctccaggtgatggatccgaacgagtagctggaatccacgatcaccgg 572
|||| |||||||||||||||||| || ||||| | ||| || || |||||||||||
Sbjct: 179 gtgcacgccgtcgctccaggtgaccgacccgaa-gtgtactcggtgtcgacgatcaccgg 121
Query: 573 gttgcctgacactgcgatggtgatttcgtatcccaggc-tctgctgcttcccgtcgaacg 631
||| || ||| | ||||||||||| ||||| ||||| |||| || || ||||||||
Sbjct: 120 gttacccgacgcggcgatggtgatgtcgtaggacaggcttctggtggctctcgtcgaaca 61
Query: 632 cgagcttgctcggggtcaccgtgacatccacgccgtacgggctggcgatc 681
| |||||||| ||| ||| |||||||||||| ||| |||||||| |||||
Sbjct: 60 ccagcttgcttgggctcaacgtgacatccacaccggacgggctgtcgatc 11
>dbj|AK110037.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-160-B04, full
insert sequence
Length = 2968
Score = 42.1 bits (21), Expect = 0.39
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 509 cgtcgtgcgcgccgtcgctcc 529
|||||||||||||||||||||
Sbjct: 398 cgtcgtgcgcgccgtcgctcc 418
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 889,600
Number of Sequences: 438736
Number of extensions: 889600
Number of successful extensions: 4705
Number of sequences better than 0.5: 13
Number of HSP's better than 0.5 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4642
Number of HSP's gapped (non-prelim): 62
length of query: 696
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 675
effective length of database: 2,791,206,460
effective search space: 1884064360500
effective search space used: 1884064360500
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)