BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3713074.2.1
(527 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_478040.1| Oryza sativa (japonica cultivar-group), mRNA 72 3e-010
dbj|AP003806.3| Oryza sativa (japonica cultivar-group) geno... 68 5e-009
dbj|AP004347.5| Oryza sativa (japonica cultivar-group) geno... 68 5e-009
gb|AACV01016147.1| Oryza sativa (japonica cultivar-group) c... 68 5e-009
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 68 5e-009
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 68 5e-009
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 68 5e-009
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 68 5e-009
dbj|AK069685.1| Oryza sativa (japonica cultivar-group) cDNA... 66 2e-008
dbj|AG208867.1| Oryza sativa (japonica cultivar-group) DNA,... 52 3e-004
>ref|XM_478040.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 3267
Score = 71.9 bits (36), Expect = 3e-010
Identities = 81/96 (84%)
Strand = Plus / Plus
Query: 49 tttgatttcttcgtgtgcatccatgctagggccaagggaacaagccgtcctacgcattac 108
|||||||||||| |||||| ||| || || ||| || ||||||||||||| ||||||
Sbjct: 2956 tttgatttcttcctgtgcagccaagccgggatcaaagggacaagccgtcctagccattac 3015
Query: 109 catgtgctacgagatgacaacaagttcaccgcagat 144
|||||||| || || |||||||| ||||||||||||
Sbjct: 3016 catgtgctgcgcgacgacaacaacttcaccgcagat 3051
>dbj|AP003806.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OJ1103_E04
Length = 111354
Score = 67.9 bits (34), Expect = 5e-009
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 83 agggaacaagccgtcctacgcattaccatgtgctacgagatgacaacaagttcaccgcag 142
|||| ||||||||||||| |||||||||||||| || || |||||||| ||||||||||
Sbjct: 62168 aggggacaagccgtcctagccattaccatgtgctgcgcgacgacaacaacttcaccgcag 62227
Query: 143 at 144
||
Sbjct: 62228 at 62229
>dbj|AP004347.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
clone:P0675B10
Length = 136229
Score = 67.9 bits (34), Expect = 5e-009
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 83 agggaacaagccgtcctacgcattaccatgtgctacgagatgacaacaagttcaccgcag 142
|||| ||||||||||||| |||||||||||||| || || |||||||| ||||||||||
Sbjct: 21355 aggggacaagccgtcctagccattaccatgtgctgcgcgacgacaacaacttcaccgcag 21414
Query: 143 at 144
||
Sbjct: 21415 at 21416
>gb|AACV01016147.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg016147, whole
genome shotgun sequence
Length = 19758
Score = 67.9 bits (34), Expect = 5e-009
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 83 agggaacaagccgtcctacgcattaccatgtgctacgagatgacaacaagttcaccgcag 142
|||| ||||||||||||| |||||||||||||| || || |||||||| ||||||||||
Sbjct: 3064 aggggacaagccgtcctagccattaccatgtgctgcgcgacgacaacaacttcaccgcag 3123
Query: 143 at 144
||
Sbjct: 3124 at 3125
>ref|NT_079899.2| Oryza sativa (japonica cultivar-group)
Length = 17249721
Score = 67.9 bits (34), Expect = 5e-009
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 83 agggaacaagccgtcctacgcattaccatgtgctacgagatgacaacaagttcaccgcag 142
|||| ||||||||||||| |||||||||||||| || || |||||||| ||||||||||
Sbjct: 4468676 aggggacaagccgtcctagccattaccatgtgctgcgcgacgacaacaacttcaccgcag 4468735
Query: 143 at 144
||
Sbjct: 4468736 at 4468737
>gb|CH401226.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000063 genomic
scaffold, whole genome shotgun sequence
Length = 15204090
Score = 67.9 bits (34), Expect = 5e-009
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 83 agggaacaagccgtcctacgcattaccatgtgctacgagatgacaacaagttcaccgcag 142
|||| ||||||||||||| |||||||||||||| || || |||||||| ||||||||||
Sbjct: 2508999 aggggacaagccgtcctagccattaccatgtgctgcgcgacgacaacaacttcaccgcag 2509058
Query: 143 at 144
||
Sbjct: 2509059 at 2509060
>gb|CM000144.1| Oryza sativa (japonica cultivar-group) chromosome 7, whole genome shotgun
sequence
Length = 28626509
Score = 67.9 bits (34), Expect = 5e-009
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 83 agggaacaagccgtcctacgcattaccatgtgctacgagatgacaacaagttcaccgcag 142
|||| ||||||||||||| |||||||||||||| || || |||||||| ||||||||||
Sbjct: 15908438 aggggacaagccgtcctagccattaccatgtgctgcgcgacgacaacaacttcaccgcag 15908497
Query: 143 at 144
||
Sbjct: 15908498 at 15908499
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
sequence
Length = 29644043
Score = 67.9 bits (34), Expect = 5e-009
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 83 agggaacaagccgtcctacgcattaccatgtgctacgagatgacaacaagttcaccgcag 142
|||| ||||||||||||| |||||||||||||| || || |||||||| ||||||||||
Sbjct: 16845601 aggggacaagccgtcctagccattaccatgtgctgcgcgacgacaacaacttcaccgcag 16845660
Query: 143 at 144
||
Sbjct: 16845661 at 16845662
>dbj|AK069685.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030E13, full
insert sequence
Length = 2503
Score = 65.9 bits (33), Expect = 2e-008
Identities = 82/97 (84%), Gaps = 1/97 (1%)
Strand = Plus / Plus
Query: 49 tttgatttcttcgtgtgcatccatgctaggg-ccaagggaacaagccgtcctacgcatta 107
|||||||||||| |||||| ||| || ||| ||| || ||||||||||||| |||||
Sbjct: 1915 tttgatttcttcctgtgcagccaagccggggatcaaagggacaagccgtcctagccatta 1974
Query: 108 ccatgtgctacgagatgacaacaagttcaccgcagat 144
||||||||| || || |||||||| ||||||||||||
Sbjct: 1975 ccatgtgctgcgcgacgacaacaacttcaccgcagat 2011
>dbj|AG208867.1| Oryza sativa (japonica cultivar-group) DNA, clone:NE4502_0_503_1A,
3' flanking sequence of Tos17 insertion in rice strain
NE4502, genomic survey sequence
Length = 490
Score = 52.0 bits (26), Expect = 3e-004
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 103 cattaccatgtgctacgagatgacaacaagttcaccgcagat 144
|||||||||||||| || || |||||||| ||||||||||||
Sbjct: 6 cattaccatgtgctgcgcgacgacaacaacttcaccgcagat 47
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 621,002
Number of Sequences: 438736
Number of extensions: 621002
Number of successful extensions: 11392
Number of sequences better than 0.5: 10
Number of HSP's better than 0.5 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11263
Number of HSP's gapped (non-prelim): 128
length of query: 527
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 506
effective length of database: 2,791,206,460
effective search space: 1412350468760
effective search space used: 1412350468760
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)